HHsearch alignment for GI: 254780687 and conserved domain: COG1886

>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion].

Probab=99.50  E-value=2.8e-13  Score=106.35  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=69.8

Q ss_pred             HHHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEEC
Q ss_conf             9999740800799998123430989945799978982578997389999999999999987889789999842
Q gi|254780687|r  231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR  303 (318)
Q Consensus       231 l~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~  303 (318)
T Consensus        64 ~~~~l~dipv~v~velGr~~~~l~eLl~l~~Gsvi~Ld~~~~e~VdI~vNg~~Ig~GEvVvvdd~~GVrItei  136 (136)
T COG1886          64 SIDLLLDIPVRLSVELGRTKMPLGELLALGKGSVIELDKLAGEPVDILVNGRLIGRGEVVVVDDKFGVRITEI  136 (136)
T ss_pred             CCHHHCCCCEEEEEEEEEEEEEHHHHHHCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEC
T ss_conf             4100215856999999313124999971189988976776899669999998997776999988678999859