HHsearch alignment for GI: 254780687 and conserved domain: PRK05698
>PRK05698 fliN flagellar motor switch protein; Validated.
Probab=99.69 E-value=2e-16 Score=126.87 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=75.1
Q ss_pred HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHH
Q ss_conf 9997408007999981234309899457999789825789973899999999999999878897899998425814678
Q gi|254780687|r 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 (318)
Q Consensus 232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~ 310 (318)
T Consensus 73 ld~ilDIPV~isVElGrt~m~I~elL~L~~GSVIeLdr~agEPvdI~VNg~liA~GEVVVv~d~fGVRIteIisp~eRi 151 (155)
T PRK05698 73 LDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERI 151 (155)
T ss_pred CCEEEECEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCHHHHH
T ss_conf 3279833069999994332279998545999789815669995489999999998869999997789999845989988