HHsearch alignment for GI: 254780687 and conserved domain: PRK05698

>PRK05698 fliN flagellar motor switch protein; Validated.
Probab=99.69  E-value=2e-16  Score=126.87  Aligned_cols=79  Identities=20%  Similarity=0.265  Sum_probs=75.1

Q ss_pred             HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHH
Q ss_conf             9997408007999981234309899457999789825789973899999999999999878897899998425814678
Q gi|254780687|r  232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS  310 (318)
Q Consensus       232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~  310 (318)
T Consensus        73 ld~ilDIPV~isVElGrt~m~I~elL~L~~GSVIeLdr~agEPvdI~VNg~liA~GEVVVv~d~fGVRIteIisp~eRi  151 (155)
T PRK05698         73 LDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERI  151 (155)
T ss_pred             CCEEEECEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCHHHHH
T ss_conf             3279833069999994332279998545999789815669995489999999998869999997789999845989988