HHsearch alignment for GI: 254780687 and conserved domain: PRK06666

>PRK06666 fliM flagellar motor switch protein FliM; Validated.
Probab=100.00  E-value=0  Score=457.57  Aligned_cols=301  Identities=16%  Similarity=0.233  Sum_probs=283.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEE
Q ss_conf             54555878457788888530122366799999999999999999999986298079986472566799897116886399
Q gi|254780687|r    4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF   83 (318)
Q Consensus         4 ~~~~~~~~p~d~~~~~r~~g~~~~~~~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~   83 (318)
T Consensus        30 ~~~~~~v~~yDf~~p~k~------~~~~l~~L~~i~e~far~~~~~Ls~~lr~~v~i~~~~ve~~~y~ef~~slp~p~~l  103 (336)
T PRK06666         30 EGDEGKVRPYDFKRQDRF------VRERLRTLEIINERFARLLRIGLSNLLRRSVEISVGSVDQVPYGEFIRSLPVPTSL  103 (336)
T ss_pred             CCCCCCCEECCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEHHHHHHHCCCCEEE
T ss_conf             556576113577772301------03357899999999999999999998478469995641898799998618996499


Q ss_pred             EEEECCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCH
Q ss_conf             99973677833999988789999998872788876666665657989999999999999999999851002732000002
Q gi|254780687|r   84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF  163 (318)
Q Consensus        84 ~i~~~~pl~g~~ll~id~~l~~~lid~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~  163 (318)
T Consensus       104 ~v~~~~pl~G~~ll~i~~~~~~~ivD~~lGG~G~~~~~~~~R~~T~iE~~ii~~v~~~~~~~l~~aw~~v~~~~~~~~~~  183 (336)
T PRK06666        104 NLVHMKPLRGTALIEFDPSLVFIIVDNLFGGDGRFHTKVEGREFTETEQRVIQRLLKLAFENLKEAWSSVVDIEPEYVRS  183 (336)
T ss_pred             EEEEECCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             99984376742899988899999999961789876676567888889999999999999999999988633788302120


Q ss_pred             HHHHCHHHHCCCCCCCEEEEEEEEEEECCEEEEEEEEEEHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHCEEEE
Q ss_conf             4431100001247871899999886667813799998504775256775432-024422379899999999974080079
Q gi|254780687|r  164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI  242 (318)
Q Consensus       164 ~~~~~~~~~~~~~p~e~vi~i~~~v~~~~~~g~~~l~lP~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~v~i  242 (318)
T Consensus       184 E~--np~~~~i~~~~e~vvv~~f~v~i~~~~g~i~i~iP~~~lepi~~~l~~~~~~~~~~~d~~~~~~l~~~l~~v~v~v  261 (336)
T PRK06666        184 EV--NPQFANIVSPNEIVVVVSFHIEIGGGGGMMNICIPYSMIEPIRKLLSAGIQSDSRDKDKRWRKELREQVQQVEVEL  261 (336)
T ss_pred             CC--CCCCEECCCCCCEEEEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf             04--8531120589875999999999778642589955387778788876353433455566668999999861682799


Q ss_pred             EEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHHH
Q ss_conf             9998123430989945799978982578997389999999999999987889789999842581467888
Q gi|254780687|r  243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK  312 (318)
Q Consensus       243 ~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l~  312 (318)
T Consensus       262 ~a~Lg~~~~tl~ell~L~vGDVI~L~~~~~~~v~v~V~g~~~f~g~~G~~~~~~Av~I~e~i~~~~~~~~  331 (336)
T PRK06666        262 VANLGEIKLTLREILNLKVGDVIPLEKPIDDPLTVKVDGKPKFTCQYGKSNGRKALQIEELIERIEDELE  331 (336)
T ss_pred             EEEECCCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCCCCCCHH
T ss_conf             9998344478999857999998995798999879999999999999988999999999883066332012