HHsearch alignment for GI: 254780687 and conserved domain: PRK06666
>PRK06666 fliM flagellar motor switch protein FliM; Validated.
Probab=100.00 E-value=0 Score=457.57 Aligned_cols=301 Identities=16% Similarity=0.233 Sum_probs=283.7
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEE
Q ss_conf 54555878457788888530122366799999999999999999999986298079986472566799897116886399
Q gi|254780687|r 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF 83 (318)
Q Consensus 4 ~~~~~~~~p~d~~~~~r~~g~~~~~~~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~ 83 (318)
T Consensus 30 ~~~~~~v~~yDf~~p~k~------~~~~l~~L~~i~e~far~~~~~Ls~~lr~~v~i~~~~ve~~~y~ef~~slp~p~~l 103 (336)
T PRK06666 30 EGDEGKVRPYDFKRQDRF------VRERLRTLEIINERFARLLRIGLSNLLRRSVEISVGSVDQVPYGEFIRSLPVPTSL 103 (336)
T ss_pred CCCCCCCEECCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEHHHHHHHCCCCEEE
T ss_conf 556576113577772301------03357899999999999999999998478469995641898799998618996499
Q ss_pred EEEECCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCH
Q ss_conf 99973677833999988789999998872788876666665657989999999999999999999851002732000002
Q gi|254780687|r 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163 (318)
Q Consensus 84 ~i~~~~pl~g~~ll~id~~l~~~lid~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~ 163 (318)
T Consensus 104 ~v~~~~pl~G~~ll~i~~~~~~~ivD~~lGG~G~~~~~~~~R~~T~iE~~ii~~v~~~~~~~l~~aw~~v~~~~~~~~~~ 183 (336)
T PRK06666 104 NLVHMKPLRGTALIEFDPSLVFIIVDNLFGGDGRFHTKVEGREFTETEQRVIQRLLKLAFENLKEAWSSVVDIEPEYVRS 183 (336)
T ss_pred EEEEECCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99984376742899988899999999961789876676567888889999999999999999999988633788302120
Q ss_pred HHHHCHHHHCCCCCCCEEEEEEEEEEECCEEEEEEEEEEHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHCEEEE
Q ss_conf 4431100001247871899999886667813799998504775256775432-024422379899999999974080079
Q gi|254780687|r 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242 (318)
Q Consensus 164 ~~~~~~~~~~~~~p~e~vi~i~~~v~~~~~~g~~~l~lP~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~v~i 242 (318)
T Consensus 184 E~--np~~~~i~~~~e~vvv~~f~v~i~~~~g~i~i~iP~~~lepi~~~l~~~~~~~~~~~d~~~~~~l~~~l~~v~v~v 261 (336)
T PRK06666 184 EV--NPQFANIVSPNEIVVVVSFHIEIGGGGGMMNICIPYSMIEPIRKLLSAGIQSDSRDKDKRWRKELREQVQQVEVEL 261 (336)
T ss_pred CC--CCCCEECCCCCCEEEEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 04--8531120589875999999999778642589955387778788876353433455566668999999861682799
Q ss_pred EEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHHH
Q ss_conf 9998123430989945799978982578997389999999999999987889789999842581467888
Q gi|254780687|r 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 (318)
Q Consensus 243 ~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l~ 312 (318)
T Consensus 262 ~a~Lg~~~~tl~ell~L~vGDVI~L~~~~~~~v~v~V~g~~~f~g~~G~~~~~~Av~I~e~i~~~~~~~~ 331 (336)
T PRK06666 262 VANLGEIKLTLREILNLKVGDVIPLEKPIDDPLTVKVDGKPKFTCQYGKSNGRKALQIEELIERIEDELE 331 (336)
T ss_pred EEEECCCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCCCCCCHH
T ss_conf 9998344478999857999998995798999879999999999999988999999999883066332012