HHsearch alignment for GI: 254780687 and conserved domain: PRK06782
>PRK06782 flagellar motor switch protein; Reviewed.
Probab=99.97 E-value=1.3e-28 Score=206.73 Aligned_cols=270 Identities=11% Similarity=0.131 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEE-EEEECCCCCCEEEEEECHHHHHHHHH
Q ss_conf 99999999999999999999986298079986472566799897116886399-99973677833999988789999998
Q gi|254780687|r 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF-SQASLSSWSSNFFIGCSNNLVITLLE 109 (318)
Q Consensus 31 ~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~-~i~~~~pl~g~~ll~id~~l~~~lid 109 (318)
T Consensus 246 EkDalGEIgNISmGSAATaLStLLnqkV~ITTP~Vsv~~~~e~-~~~~~P~V~v~V~YteGl~G~NlLVik~~DAaiIAD 324 (547)
T PRK06782 246 EKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVD 324 (547)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCEEEEEHHHC-CCCCCCEEEEEEEEECCCCCEEEEEEECCHHHHHHH
T ss_conf 8887642310023348999999968861654682799666770-357887299999885053542589996025999999
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCEECCCH-HHHHCHHHHCCCCCCCEEEEE
Q ss_conf 87278887666666565798999999999999999----9999851002732000002-443110000124787189999
Q gi|254780687|r 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA----VLNQCISTTQESSPNLEDF-YDIDYLKKNTNRLSNEFVTTI 184 (318)
Q Consensus 110 ~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~----~l~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~e~vi~i 184 (318)
T Consensus 325 LMMGGdG~v~~~---~EL~EieLSAV~EAMNQMMGSAATSMStmf~kkVDISPP~v~l~~~~d~~~~~~~~~~~d~iVkV 401 (547)
T PRK06782 325 LMMMGTGEVDEE---KELTELELSGIKEIMNQMMGHAATAMSEMFQEKMDMTPPTVKFVTLKEEMEYLGESMEVDELVQI 401 (547)
T ss_pred HHCCCCCCCCCC---CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 862799988986---54212025889999999887888899999678753589942777337666556667888868999
Q ss_pred EEEEEECCE-EEEEEEEEEHHHHHHHHHHHHHC----------------CCCCCCCCHHHH---------HHHHHHHHHC
Q ss_conf 988666781-37999985047752567754320----------------244223798999---------9999997408
Q gi|254780687|r 185 NMNMTIENV-ASSFVLIIPQETLLKTTLISLSS----------------QNKSENQSEDLI---------DPFARKTYQL 238 (318)
Q Consensus 185 ~~~v~~~~~-~g~~~l~lP~~~l~~~~~~~~~~----------------~~~~~~~~~~~~---------~~l~~~l~~~ 238 (318)
T Consensus 402 sF~LeIgdLIdS~IMQi~Pi~fAKemv~~ll~~~~~~e~~~~~~~~~~~~~~~p~vqP~~~~~~~~~~~~~~n~~lLlDV 481 (547)
T PRK06782 402 TFNLEIGDLLQSKMYQILPISEAKEMVRRLLYPMVKEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 481 (547)
T ss_pred EEEEEECCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 99978788337634675488999999999856764333456544457888999877876556666567666444651426
Q ss_pred EEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECC
Q ss_conf 007999981234309899457999789825789973899999999999999878897899998425
Q gi|254780687|r 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 (318)
Q Consensus 239 ~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i 304 (318)
T Consensus 482 PL~VtVeLGRTKksIKdILel~~GSIIELDKLAgEPVDILVNGklIAkGEVVVIDENFGVRITE~~ 547 (547)
T PRK06782 482 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547 (547)
T ss_pred CEEEEEEECCCCCCHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEECC
T ss_conf 607999964765509997267999779850016997289998889987759998788646776139