HHsearch alignment for GI: 254780687 and conserved domain: PRK06782
>PRK06782 flagellar motor switch protein; Reviewed.
Probab=99.18 E-value=8.5e-09 Score=76.94 Aligned_cols=173 Identities=11% Similarity=0.163 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCE-EEEEEECCCCCCEEEEEECHHHHHHHH
Q ss_conf 7999999999999999999999862980799864725667998971168863-999997367783399998878999999
Q gi|254780687|r 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF-VFSQASLSSWSSNFFIGCSNNLVITLL 108 (318)
Q Consensus 30 ~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~-~~~i~~~~pl~g~~ll~id~~l~~~li 108 (318)
T Consensus 25 ~E~D~iGEIgNIsmGsaaTaLS~lL~~kV~ITTP~V~v~~~~~~-~~~~~p~v~v~v~y~~G~~G~Nllvik~~da~iIa 103 (547)
T PRK06782 25 QECDILGEIANISFGSASTVLSTILNRQVSITAPRVELVDLYDT-SDVEVPHVVLNIHFTKGLDMENLLVLQQDVALSIA 103 (547)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCEEEEEEHHHH-HCCCCCCEEEEEEEECCCCCEEEEEEECCCHHHHH
T ss_conf 78877641443110238999999967962743780799883452-12678808999987226463568998502099999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCEE-CCCHHHHHCHHHHCCCCCCCEEEE
Q ss_conf 88727888766666656579899999999999999----9999985100273200-000244311000012478718999
Q gi|254780687|r 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS----AVLNQCISTTQESSPN-LEDFYDIDYLKKNTNRLSNEFVTT 183 (318)
Q Consensus 109 d~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~----~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~e~vi~ 183 (318)
T Consensus 104 dlMMgGdG~~~~---~~el~Ei~lSAv~EAMNQMmGsaATsms~~~~~~vdIspPti~~~~~~~~~e~~~~~~~~~~~vk 180 (547)
T PRK06782 104 DLMMMGTGEVED---GKELGELELSAVQEAMNQMMGFAATSMSEFFQDTVDMSPPTIKVVKLSEEMEKISEIDGNQTIVK 180 (547)
T ss_pred HHHCCCCCCCCC---CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCEEEE
T ss_conf 986389999998---76553202578999998777187889999967976469996033556434255578997760899
Q ss_pred EEEEEEECCE-EEEEEEEEEHHHH
Q ss_conf 9988666781-3799998504775
Q gi|254780687|r 184 INMNMTIENV-ASSFVLIIPQETL 206 (318)
Q Consensus 184 i~~~v~~~~~-~g~~~l~lP~~~l 206 (318)
T Consensus 181 v~f~l~i~~li~s~~~q~~~~~~~ 204 (547)
T PRK06782 181 VSFDLKIDNLVNSKLVQIVSVEHA 204 (547)
T ss_pred EEEEEEECCCCCCCEEEEEEHHHH
T ss_conf 998888443213110366437899