HHsearch alignment for GI: 254780687 and conserved domain: PRK06788

>PRK06788 flagellar motor switch protein; Validated.
Probab=99.59  E-value=1e-14  Score=115.77  Aligned_cols=76  Identities=14%  Similarity=0.149  Sum_probs=71.8

Q ss_pred             HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCH
Q ss_conf             9997408007999981234309899457999789825789973899999999999999878897899998425814
Q gi|254780687|r  232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD  307 (318)
Q Consensus       232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~  307 (318)
T Consensus        28 ldll~DV~v~vsVELGrt~m~ikdlL~L~~GsVVELdk~AGepvDi~VNgkliArGEVVVvde~fGVRITeI~~~k  103 (119)
T PRK06788         28 IDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEIEADK  103 (119)
T ss_pred             CCEEEECEEEEEEEECCEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCCCEEEEEEECCHH
T ss_conf             5569712069999975425689997457998689984348996799999999987759998586068999844456