HHsearch alignment for GI: 254780687 and conserved domain: PRK07963
>PRK07963 fliN flagellar motor switch protein FliN; Validated.
Probab=99.73 E-value=5.7e-17 Score=130.49 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=75.3
Q ss_pred HHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHH
Q ss_conf 9974080079999812343098994579997898257899738999999999999998788978999984258146788
Q gi|254780687|r 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 (318)
Q Consensus 233 ~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l 311 (318)
T Consensus 55 dlilDIpV~itVeLGrt~m~i~eLL~L~~GsVIeLdr~agepvdI~VNg~liA~GEVVvv~dk~GVRIteIisp~eRi~ 133 (137)
T PRK07963 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMR 133 (137)
T ss_pred CEEECCEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCHHHHHH
T ss_conf 2686141799999903320899984569998898477599956999999999998799999878899998559899998