HHsearch alignment for GI: 254780687 and conserved domain: PRK07963

>PRK07963 fliN flagellar motor switch protein FliN; Validated.
Probab=99.73  E-value=5.7e-17  Score=130.49  Aligned_cols=79  Identities=22%  Similarity=0.262  Sum_probs=75.3

Q ss_pred             HHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHH
Q ss_conf             9974080079999812343098994579997898257899738999999999999998788978999984258146788
Q gi|254780687|r  233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL  311 (318)
Q Consensus       233 ~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l  311 (318)
T Consensus        55 dlilDIpV~itVeLGrt~m~i~eLL~L~~GsVIeLdr~agepvdI~VNg~liA~GEVVvv~dk~GVRIteIisp~eRi~  133 (137)
T PRK07963         55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMR  133 (137)
T ss_pred             CEEECCEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCHHHHHH
T ss_conf             2686141799999903320899984569998898477599956999999999998799999878899998559899998