HHsearch alignment for GI: 254780687 and conserved domain: PRK08432
>PRK08432 flagellar motor switch protein FliY; Validated.
Probab=99.95 E-value=5.4e-25 Score=183.08 Aligned_cols=263 Identities=17% Similarity=0.163 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEECC-CCCCEEEEEECHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999986298079986472566799897116886399999736-778339999887899999988727888
Q gi|254780687|r 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASH 116 (318)
Q Consensus 38 ~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~~-pl~g~~ll~id~~l~~~lid~~lGG~g 116 (318)
T Consensus 4 F~~l~~~E~~~TiEgL~Gktp~v~~~~e~~~~~---~~~i~~p~v~~~i~~~~~~~g~~~~~~~~~latalaDlMMGGeG 80 (281)
T PRK08432 4 FIKIFTNEVVSTIEGLTGKTPSVGEEKEFDVST---ENLIKAPYVRAIISASGDGNGKIELLAPVVLVTALSDLMLGEEG 80 (281)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC---CCCCCCCEEEEEEEECCCCCCEEEEEECHHHHHHHHHHHCCCCC
T ss_conf 899999999998888618897432010125432---23578977999999668887159999278999999998548899
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCEECCCHHHHHCHHHHCCCCCCCEEEEEEEEEEECCE
Q ss_conf 766666656579899999999999999999998510027---32000002443110000124787189999988666781
Q gi|254780687|r 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE---SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 (318)
Q Consensus 117 ~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~v~~~~~ 193 (318)
T Consensus 81 ~~k~-----el~ed~LdA~kE~~sni~Gs~sTSL~aq~~~pK~~fs~~~~~~v---~~--~~d~~~~~~~~~f~~~i~~i 150 (281)
T PRK08432 81 ISKE-----EMGNDDLDAAKEIASNIFGAISTSLGAQKLLPKLNFTIENAEFV---DE--NVDFEDYEKLFLFSFKIEDI 150 (281)
T ss_pred CCCC-----CCCHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEECCCCEEE---CC--CCCCCCCCCEEEEEEEECCC
T ss_conf 9944-----26712447899999998888562567652798336744740563---25--54300355169999993650
Q ss_pred EEEEEEEEEHHHHHHHHHH-HHHCCCCCC----------CCCHHHHHHHHHHHHHCEEEEEEEEEEEEECHHHHHCCCCC
Q ss_conf 3799998504775256775-432024422----------37989999999997408007999981234309899457999
Q gi|254780687|r 194 ASSFVLIIPQETLLKTTLI-SLSSQNKSE----------NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 (318)
Q Consensus 194 ~g~~~l~lP~~~l~~~~~~-~~~~~~~~~----------~~~~~~~~~l~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vG 262 (318)
T Consensus 151 ~s~i~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~n-~~ll~Dv~l~v~VelGrt~m~ikdiL~l~~G 228 (281)
T PRK08432 151 NSQIILLMDQTFE-NIFEKKHKEEGEESTDSAANEEHDASLSSEEIKN-INLIMDVRLPVKVRIGQKKMLLKDVLSMDIG 228 (281)
T ss_pred HHEEEEEEHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC-CCEEEECCEEEEEEECCCEEEHHHHHCCCCC
T ss_conf 3303111058898-6516566564456876655554555557610146-1058945438999977630479998527999
Q ss_pred CEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHHHHHHH
Q ss_conf 789825789973899999999999999878897899998425814678888751
Q gi|254780687|r 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 (318)
Q Consensus 263 DVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l~~~~~ 316 (318)
T Consensus 229 svveLdk~a~ep~di~vn~~liA~GEvVvv~~~fGvrit~I~s~~eR-l~~lr~ 281 (281)
T PRK08432 229 SVVELNQLANDPLEILVDDKVIAKGEVVIVDGNFGIQITDIGTKKER-LEQLKH 281 (281)
T ss_pred CEEEECCCCCCCEEEEECCEEEEEEEEEEECCCCEEEEEEECCHHHH-HHHHCC
T ss_conf 67985223799648999999998762999878402899983698999-887419