HHsearch alignment for GI: 254780687 and conserved domain: PRK12795
>PRK12795 fliM flagellar motor switch protein FliM; Reviewed.
Probab=100.00 E-value=0 Score=476.44 Aligned_cols=301 Identities=15% Similarity=0.229 Sum_probs=282.8
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEEC
Q ss_conf 87845778888853012236679999999999999999999998629807998647256679989711688639999973
Q gi|254780687|r 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 (318)
Q Consensus 9 ~~~p~d~~~~~r~~g~~~~~~~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~ 88 (318)
T Consensus 63 ~~~~~~~~~~~~~~~~~~vs~eRmP~LeiI~dRfaR~~~~sL~n~~r~~veVsl~~V~~~kfgefl~sLp~PT~lnvf~~ 142 (378)
T PRK12795 63 ELSADDESGIRAIIDSAMVSYERLPMLEIVFDRLVRLLTTSLRNFTSDNVEVSLDRITSVRFGDYLNSIPLPALLAVFKA 142 (378)
T ss_pred CCCCCCCHHHHHHHHHCEECHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEHHHHHHCCCCCCEEEEEEC
T ss_conf 88865411499987520210864725889999999999999988625771898530568899898753888747999871
Q ss_pred CCCCCEEEEEECHHHHHHHHHHHHCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH
Q ss_conf 677833999988789999998872788-8766666656579899999999999999999998510027320000024431
Q gi|254780687|r 89 SSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167 (318)
Q Consensus 89 ~pl~g~~ll~id~~l~~~lid~~lGG~-g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~ 167 (318)
T Consensus 143 ~PL~G~~L~~idp~Lvf~iVD~lfGG~rG~~~~kiEgReFT~IE~rIi~rvl~~vl~dl~~AW~pV~~v~f~~~r~Et-- 220 (378)
T PRK12795 143 EEWDNYGLLTVDSSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERLVEVVLADLEQAFRPLSPVTFTIDRLET-- 220 (378)
T ss_pred CCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC--
T ss_conf 566785899987789999999860898787676668998888999999999999999999973064200257999854--
Q ss_pred CHHHHCCCCCCCEEEEEEEEEEECCEEEEEEEEEEHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHCEEEEEEEE
Q ss_conf 100001247871899999886667813799998504775256775432-0244223798999999999740800799998
Q gi|254780687|r 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 (318)
Q Consensus 168 ~~~~~~~~~p~e~vi~i~~~v~~~~~~g~~~l~lP~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~v~i~a~L 246 (318)
T Consensus 221 NPqFAqIvsPnEvVVv~tf~Ieig~~~G~m~IciPYstLEPIRd~L~~~~~~ek~~~D~~W~~~L~~eI~~a~V~l~A~L 300 (378)
T PRK12795 221 NPRFAAITRPANAAILVRLRIDMEDRGGRIELLLPYATLEPIRDLLLQMFMGEKFGRDSIWEGHLATEIWQTDVEVDAVL 300 (378)
T ss_pred CHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHCCEEEEEEEE
T ss_conf 86785003888539999999998897169999944777656899872544531246667999999999835922899999
Q ss_pred EEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHH
Q ss_conf 12343098994579997898257899738999999999999998788978999984258146788
Q gi|254780687|r 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 (318)
Q Consensus 247 g~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l 311 (318)
T Consensus 301 g~~~itL~dvL~LkvGDVI~Ld~~~d~~v~v~v~gvp~F~g~~G~~~g~~AvqIt~~l~~p~~~~ 365 (378)
T PRK12795 301 DEQTLPLKQVMALKVGDTLPLDARPDALVTLRCGSVPLFEGRMGRVGDRVAVRVEKPLRKPRTTL 365 (378)
T ss_pred ECCEEEHHHHHCCCCCCEEEECCCCCCEEEEEECCEEEEEEECCCCCCEEEEEEEECCCCCCCHH
T ss_conf 35488899985799999899679999607999999998997247489989999851478972369