HHsearch alignment for GI: 254780687 and conserved domain: TIGR02551

>TIGR02551 SpaO_YscQ type III secretion apparatus protein, YscQ/HrcQ family; InterPro: IPR013385 Proteins in this entry are encoded within type III secretion operons and are involved in many different functions. For example, YscQ in Yersinia is essential for YOPs secretion , while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid , and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae .; GO: 0030254 protein secretion by the type III secretion system.
Probab=92.73  E-value=0.091  Score=30.88  Aligned_cols=165  Identities=10%  Similarity=0.046  Sum_probs=84.7

Q ss_pred             EEEECCCCCCEEEEEECHHHHHHHHHHH---HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf             9997367783399998878999999887---2788876666665657989999999999999999999851002732000
Q gi|254780687|r   84 SQASLSSWSSNFFIGCSNNLVITLLENL---LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL  160 (318)
Q Consensus        84 ~i~~~~pl~g~~ll~id~~l~~~lid~~---lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~  160 (318)
T Consensus        11 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----------~~~~~~~~~~~~~~~~a~l~~~~~~~~~l~~~~~~~   80 (326)
T TIGR02551        11 VALALALAGQELSLWLRLAELALWLAPALAALAE----------AAFASLPLELLLLLLLAALAPAGLLLTELVALGEAP   80 (326)
T ss_pred             EEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCC----------CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             0688632873688975356889898888741010----------003320211678998876556532222110246344


Q ss_pred             CCHHHHHCHHHHCCCCCCCEEEEEEEEE-EECCEEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCE
Q ss_conf             0024431100001247871899999886-667813799998504775256775432024422379899999999974080
Q gi|254780687|r  161 EDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN  239 (318)
Q Consensus       161 ~~~~~~~~~~~~~~~~p~e~vi~i~~~v-~~~~~~g~~~l~lP~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  239 (318)
T Consensus        81 ~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  143 (326)
T TIGR02551        81 AS------LPAPQQLSLL--ALRLGLTLGEGDDLPEAVLLLATLALWLTWV---------AAALLAALPARPTVRLKALP  143 (326)
T ss_pred             CC------CCCCCCCCCH--HHHHEEEECCCCCCCCCEEEECCHHHHHHHH---------HHHHHHHCCCCCCCCCCCCE
T ss_conf             45------6676554100--0110000014444320001100300023455---------43222200014644345530


Q ss_pred             EEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEE
Q ss_conf             079999812343098994579997898257899738
Q gi|254780687|r  240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA  275 (318)
Q Consensus       240 v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v  275 (318)
T Consensus       144 ~~~~l~~G~~~l~~~~L~~l~~GDvLL~~~~~~~~~  179 (326)
T TIGR02551       144 LPVRLEIGSSRLALAELRSLEPGDVLLLDNPAAARA  179 (326)
T ss_pred             EEEEEEEEEEEECHHHHHHHCCCCEEECCCCCCCCC
T ss_conf             688899853563467762320585663265311220