HHsearch alignment for GI: 254780687 and conserved domain: TIGR02551
>TIGR02551 SpaO_YscQ type III secretion apparatus protein, YscQ/HrcQ family; InterPro: IPR013385 Proteins in this entry are encoded within type III secretion operons and are involved in many different functions. For example, YscQ in Yersinia is essential for YOPs secretion , while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid , and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae .; GO: 0030254 protein secretion by the type III secretion system.
Probab=92.73 E-value=0.091 Score=30.88 Aligned_cols=165 Identities=10% Similarity=0.046 Sum_probs=84.7
Q ss_pred EEEECCCCCCEEEEEECHHHHHHHHHHH---HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 9997367783399998878999999887---2788876666665657989999999999999999999851002732000
Q gi|254780687|r 84 SQASLSSWSSNFFIGCSNNLVITLLENL---LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 (318)
Q Consensus 84 ~i~~~~pl~g~~ll~id~~l~~~lid~~---lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~ 160 (318)
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----------~~~~~~~~~~~~~~~~a~l~~~~~~~~~l~~~~~~~ 80 (326)
T TIGR02551 11 VALALALAGQELSLWLRLAELALWLAPALAALAE----------AAFASLPLELLLLLLLAALAPAGLLLTELVALGEAP 80 (326)
T ss_pred EEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCC----------CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 0688632873688975356889898888741010----------003320211678998876556532222110246344
Q ss_pred CCHHHHHCHHHHCCCCCCCEEEEEEEEE-EECCEEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCE
Q ss_conf 0024431100001247871899999886-667813799998504775256775432024422379899999999974080
Q gi|254780687|r 161 EDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 (318)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~e~vi~i~~~v-~~~~~~g~~~l~lP~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 239 (318)
T Consensus 81 ~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 143 (326)
T TIGR02551 81 AS------LPAPQQLSLL--ALRLGLTLGEGDDLPEAVLLLATLALWLTWV---------AAALLAALPARPTVRLKALP 143 (326)
T ss_pred CC------CCCCCCCCCH--HHHHEEEECCCCCCCCCEEEECCHHHHHHHH---------HHHHHHHCCCCCCCCCCCCE
T ss_conf 45------6676554100--0110000014444320001100300023455---------43222200014644345530
Q ss_pred EEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEE
Q ss_conf 079999812343098994579997898257899738
Q gi|254780687|r 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 (318)
Q Consensus 240 v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v 275 (318)
T Consensus 144 ~~~~l~~G~~~l~~~~L~~l~~GDvLL~~~~~~~~~ 179 (326)
T TIGR02551 144 LPVRLEIGSSRLALAELRSLEPGDVLLLDNPAAARA 179 (326)
T ss_pred EEEEEEEEEEEECHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 688899853563467762320585663265311220