HHsearch alignment of GI: 254780687 and MMDB domain: 1o6a_A_20-96
>1o6a_A (A:20-96) Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima}
Probab=99.68 E-value=3.8e-16 Score=124.69 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=69.4
Q ss_pred EEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHH
Q ss_conf 007999981234309899457999789825789973899999999999999878897899998425814678
Q gi|254780687|r 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 (318)
Q Consensus 239 ~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~ 310 (318)
||+++|+||+++|+++++++|++||||+|+.++++++.++|||+++|+|++|.++++|||||++.+.+++++
T Consensus 1 Pv~l~~~lg~~~~tl~ell~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~~~av~I~~~~~~~~~~ 72 (77)
T 1o6a_A 1 PLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVSPKERL 72 (77)
T ss_dssp EEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETTEEEEEEEEECCHHHHH
T ss_pred CEEEEEEEECCEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCCHHHH
T ss_conf 279999993118449998458999999867979997899999999999999999999999998832948998