HHsearch results for GI: 254780687 and protein with PDBid: 1o6a_A

>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A

Probab=99.73  E-value=3.3e-17  Score=130.63  Aligned_cols=82  Identities=20%  Similarity=0.286  Sum_probs=75.8

Q ss_pred             HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHH
Q ss_conf             99974080079999812343098994579997898257899738999999999999998788978999984258146788
Q gi|254780687|r  232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL  311 (318)
Q Consensus       232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l  311 (318)
                      .+.++++||+++|+||+++++++|+++|++||||+|+++.+++++++|||+++|+|++|.+|+++||||++.+.++++ +
T Consensus        13 l~~l~di~v~l~~~lg~~~l~l~dl~~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~~~av~I~~~i~~~~~-~   91 (96)
T 1o6a_A           13 LELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVSPKER-L   91 (96)
T ss_dssp             HHHHTTCEEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETTEEEEEEEEECCHHHH-H
T ss_pred             HHHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCCHHH-H
T ss_conf             466326608999999510856999846899999991798999789999999999999999999999999984194899-8


Q ss_pred             HHH
Q ss_conf             887
Q gi|254780687|r  312 KNF  314 (318)
Q Consensus       312 ~~~  314 (318)
                      +++
T Consensus        92 ~~l   94 (96)
T 1o6a_A           92 ELL   94 (96)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             764