HHsearch results for GI: 254780687 and protein with PDBid: 1squ_A

>1squ_A CHEX protein; alpha-beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.40A {Thermotoga maritima} SCOP: d.252.1.1 PDB: 1xko_A
Probab=95.46  E-value=0.13  Score=28.50  Aligned_cols=113  Identities=5%  Similarity=0.010  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEE-CCCCCCEEEEEECHHHHHHHHHHHHCCC
Q ss_conf             999999999999999862980799864725667998971168863999997-3677833999988789999998872788
Q gi|254780687|r   37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGAS  115 (318)
Q Consensus        37 ~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~-~~pl~g~~ll~id~~l~~~lid~~lGG~  115 (318)
                      .+-.-|.......|++.++..+......++..       ..+.+.+.+++. ..++.|..++.++...+..+++.|+||.
T Consensus         4 e~in~f~~a~~~vl~~~~g~e~~~~~~~~~~~-------~~~~~~i~~~i~~~G~~~G~i~l~~~~~~a~~i~~~mlg~~   76 (155)
T 1squ_A            4 RIVNALIGSVYETIRDVLGIEPKTGKPSTVSH-------IEIPHSLVTVIGITGGIEGSLIYSFSSETALKVVSAMMGGM   76 (155)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEECCCEECSS-------BCCCSSEEEEEEEEESCCEEEEEEECHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-------CCCCCCEEEEEEEECCCCEEEEEEECHHHHHHHHHHHHCCC
T ss_conf             99999999999999998599845078535403-------56788789999980366459999929999999999983899


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHH
Q ss_conf             8766666656579899999999999999999998510027320000024
Q gi|254780687|r  116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY  164 (318)
Q Consensus       116 g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~  164 (318)
                      ..       .++.+.....+..+.+.++.......+. .++...+..|.
T Consensus        77 ~~-------~~~~e~~~da~~El~N~I~G~~~~~l~~-~g~~i~~s~P~  117 (155)
T 1squ_A           77 EY-------NQLDELALSAIGELGNMTAGKLAMKLEH-LGKHVDITPPT  117 (155)
T ss_dssp             CC-------CSCCHHHHHHHHHHHHHHHHHHHHHHHT-TSCCEEECCCE
T ss_pred             CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCE
T ss_conf             87-------6423889999999999989999999986-79818725997