Query gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 318
No_of_seqs 160 out of 776
Neff 8.3
Searched_HMMs 13730
Date Wed Jun 1 09:02:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780687.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o6aa_ b.139.1.1 (A:) Putativ 99.7 3.5E-17 2.6E-21 128.9 11.6 81 233-314 5-85 (87)
2 d1o9ya_ b.139.1.1 (A:) Structu 99.6 1.9E-15 1.4E-19 117.5 11.8 70 235-304 2-71 (71)
3 d1xkra_ d.252.1.1 (A:) Chemota 98.9 1.4E-06 1E-10 59.5 21.5 177 31-212 8-201 (205)
4 d1xkoa_ d.252.1.1 (A:) Chemota 96.4 0.028 2.1E-06 31.2 14.9 113 37-164 5-118 (153)
5 d1dzfa2 d.78.1.1 (A:144-215) E 28.9 13 0.00094 13.8 2.2 21 251-271 39-59 (72)
6 d1hmja_ d.78.1.1 (A:) RNA poly 26.7 14 0.001 13.5 1.8 19 252-270 33-51 (68)
7 d1wida_ b.142.1.2 (A:) DNA-bin 25.2 13 0.00095 13.7 1.4 28 246-273 72-99 (117)
8 d1eika_ d.78.1.1 (A:) RNA poly 22.1 15 0.0011 13.3 1.2 19 252-270 44-62 (77)
9 d1wpga1 b.82.7.1 (A:125-239) C 21.6 18 0.0013 12.9 2.3 19 258-276 20-38 (115)
10 d1nr9a_ d.177.1.1 (A:) Putativ 21.5 18 0.0013 12.9 3.6 20 253-272 177-196 (221)
11 d1s04a_ b.122.1.6 (A:) Hypothe 21.3 12 0.00088 14.0 0.6 37 223-268 7-43 (110)
No 1
>d1o6aa_ b.139.1.1 (A:) Putative flagelar motor switch protein FliN {Thermotoga maritima [TaxId: 2336]}
Probab=99.72 E-value=3.5e-17 Score=128.86 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=75.2
Q ss_pred HHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHHH
Q ss_conf 99740800799998123430989945799978982578997389999999999999987889789999842581467888
Q gi|254780687|r 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 (318)
Q Consensus 233 ~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l~ 312 (318)
+.++++||+++|+||+++++++|+++|++||||+|+.+.+++++++|||+++|+|++|.+|+++||||++.+..+++ ++
T Consensus 5 ~~i~dipv~l~~~Lg~~~l~l~el~~L~~Gdvi~L~~~~~~~v~l~v~g~~~~~g~lg~~~~~~av~I~~~i~~~e~-~~ 83 (87)
T d1o6aa_ 5 ELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVSPKER-LE 83 (87)
T ss_dssp HHHTTCEEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETTEEEEEEEEECCHHHH-HH
T ss_pred HHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCCHHH-HH
T ss_conf 23326717999999300845999857999999991898999799999999999999999999999999981595899-88
Q ss_pred HH
Q ss_conf 87
Q gi|254780687|r 313 NF 314 (318)
Q Consensus 313 ~~ 314 (318)
.+
T Consensus 84 ~l 85 (87)
T d1o6aa_ 84 LL 85 (87)
T ss_dssp HH
T ss_pred HH
T ss_conf 64
No 2
>d1o9ya_ b.139.1.1 (A:) Structural protein HrcQ2, C-terminal domain {Pseudomonas syringae [TaxId: 317]}
Probab=99.63 E-value=1.9e-15 Score=117.53 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=67.5
Q ss_pred HHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECC
Q ss_conf 7408007999981234309899457999789825789973899999999999999878897899998425
Q gi|254780687|r 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 (318)
Q Consensus 235 l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i 304 (318)
+.++|++++++||+++++++|+++|++||||+|++..+++|++++||+++|+|++|..|+++||||++.+
T Consensus 2 l~~i~v~l~~~lg~~~~~l~el~~L~~G~vl~l~~~~~~~V~l~v~g~~i~~G~l~~~~~~~av~It~li 71 (71)
T d1o9ya_ 2 LDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEGRLGLQITRLV 71 (71)
T ss_dssp CTTCEEEEEEEEEEEEEEHHHHHTCCTTCEEEECSSCTTEEEEEETTEEEEEEEEEEETTEEEEEEEEEC
T ss_pred CCCEEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEEC
T ss_conf 5420689999992008389998535899999918778997999999889999999999999999999919
No 3
>d1xkra_ d.252.1.1 (A:) Chemotaxis protein CheC {Thermotoga maritima [TaxId: 2336]}
Probab=98.88 E-value=1.4e-06 Score=59.47 Aligned_cols=177 Identities=11% Similarity=0.064 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCC---EEEEEEE-CCCCCCEEEEEECHHHHHH
Q ss_conf 99999999999999999999986298079986472566799897116886---3999997-3677833999988789999
Q gi|254780687|r 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN---FVFSQAS-LSSWSSNFFIGCSNNLVIT 106 (318)
Q Consensus 31 ~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p---~~~~i~~-~~pl~g~~ll~id~~l~~~ 106 (318)
..+.++++..--+...+++|+..++..|++++..++..++.++...+..+ .+..... ..++.|.+++.++..-+-.
T Consensus 8 ~~D~l~Ei~NIg~G~AAtaLs~ll~~~v~l~vp~v~~~~~~e~~~~l~~~~~~~~~v~~~~~G~~~G~~ll~f~~~~a~~ 87 (205)
T d1xkra_ 8 QKDLLKEIGNIGAGNAATAISYMINKKVEISVPNVEIVPISKVIFIAKDPEEIVVGVKMPVTGDIEGSVLLIMGTTVVKK 87 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCEEEECCCEEEEEGGGGGGGSSCTTCEEEEEEEEEEESSCEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEHHHHHHHHCCCCCEEEEEEEEEEECCCEEEEEEECHHHHHH
T ss_conf 99999999998888999999998599689877979997589999872786650899999866066648999988899999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHC-------HHH--HCCCCC
Q ss_conf 99887278887666666565798999999999999999999985100273200000244311-------000--012478
Q gi|254780687|r 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY-------LKK--NTNRLS 177 (318)
Q Consensus 107 lid~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~p 177 (318)
+++.|+|..+.. ..++++.+...+..+.+.+..++-.+|+...+....+..|..... ... ......
T Consensus 88 l~~~L~g~~~~~-----~~~~~e~~~sal~EvgNIl~ga~l~~ls~~l~~~i~~s~P~~~~d~~~~i~~~~~~~~~~~~~ 162 (205)
T d1xkra_ 88 ILEILTGRAPDN-----LLNLDEFSASALREIGNIMCGTYVSALADFLGFKIDTLPPQLVIDMISAIFAEASIEELEDNS 162 (205)
T ss_dssp HHHHHHSCCCSC-----STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCEEEEEEHHHHHHHHHHHHHSSCC
T ss_pred HHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEECCHHHHCCHHHHHHHCCCC
T ss_conf 999856999776-----543037899999999999999999999998698776669978834635423536554302678
Q ss_pred CCEEEEEEEEEEECC----EEEEEEEEEEHHHHHHHHHH
Q ss_conf 718999998866678----13799998504775256775
Q gi|254780687|r 178 NEFVTTINMNMTIEN----VASSFVLIIPQETLLKTTLI 212 (318)
Q Consensus 178 ~e~vi~i~~~v~~~~----~~g~~~l~lP~~~l~~~~~~ 212 (318)
++.++++...+.+++ ..|.+.++.....+.....+
T Consensus 163 ~~~vl~i~t~~~~~~~~~~i~g~l~ll~~~~sl~~L~~~ 201 (205)
T d1xkra_ 163 EDQIVFVETLLKVEEEEEPLTSYMMMIPKPGYLVKIFER 201 (205)
T ss_dssp CCEEEEEEEEEEETTSSSCEEEEEEEEECTTHHHHHHHT
T ss_pred CCEEEEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHH
T ss_conf 875999999999637786378999991598999999997
No 4
>d1xkoa_ d.252.1.1 (A:) Chemotaxis protein CheX {Thermotoga maritima [TaxId: 2336]}
Probab=96.41 E-value=0.028 Score=31.19 Aligned_cols=113 Identities=5% Similarity=0.023 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEEC-CCCCCEEEEEECHHHHHHHHHHHHCCC
Q ss_conf 9999999999999998629807998647256679989711688639999973-677833999988789999998872788
Q gi|254780687|r 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGAS 115 (318)
Q Consensus 37 ~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~-~pl~g~~ll~id~~l~~~lid~~lGG~ 115 (318)
.+-.-|.......|++.++..+......++.. ..+.+.+.+++.. .++.|..++.++..++..+++.|+||.
T Consensus 5 e~in~f~~a~~~vl~~m~~~e~~~~~~~~~~~-------~~~~~~i~~~i~~~G~~~G~~~l~~~~~~a~~i~~~mlg~~ 77 (153)
T d1xkoa_ 5 RIVNALIGSVYETIRDVLGIEPKTGKPSTVSH-------IEIPHSLVTVIGITGGIEGSLIYSFSSETALKVVSAMMGGM 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCEECCCEEESS-------CCCCCSEEEEEEEEESSCEEEEEEECHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-------CCCCCCEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHCCC
T ss_conf 99999999999999998599842388546622-------56788789999961464279999988999999999983899
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHH
Q ss_conf 8766666656579899999999999999999998510027320000024
Q gi|254780687|r 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 (318)
Q Consensus 116 g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~ 164 (318)
.. .++.+.....+..+.+.+++.....++.. +....+..|.
T Consensus 78 ~~-------~~~~e~~~da~~E~~NiI~G~~~~~l~~~-g~~i~~s~P~ 118 (153)
T d1xkoa_ 78 EY-------NQLDELALSAIGELGNMTAGKLAMKLEHL-GKHVDITPPT 118 (153)
T ss_dssp CC-------CSCCHHHHHHHHHHHHHHHHHHHHHCCC----CEEECCCE
T ss_pred CC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECCCE
T ss_conf 87-------40778899999999999999999999867-9869844997
No 5
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.90 E-value=13 Score=13.78 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=16.6
Q ss_pred ECHHHHHCCCCCCEEECCCCC
Q ss_conf 309899457999789825789
Q gi|254780687|r 251 TTLKDVVTLKIGQVIPFLHRE 271 (318)
Q Consensus 251 l~l~dil~L~vGDVI~L~~~~ 271 (318)
=++...+++++|||+.+.+.-
T Consensus 39 DPva~~~g~~~GdvikI~R~s 59 (72)
T d1dzfa2 39 DPVALYLGLKRGEVVKIIRKS 59 (72)
T ss_dssp CHHHHHHTCCTTCEEEEECTT
T ss_pred CHHHHHCCCCCCCEEEEEECC
T ss_conf 973561188889789999758
No 6
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.73 E-value=14 Score=13.53 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=15.2
Q ss_pred CHHHHHCCCCCCEEECCCC
Q ss_conf 0989945799978982578
Q gi|254780687|r 252 TLKDVVTLKIGQVIPFLHR 270 (318)
Q Consensus 252 ~l~dil~L~vGDVI~L~~~ 270 (318)
|+...+++++|||+.+.+.
T Consensus 33 Pva~~~g~k~GdvvkI~R~ 51 (68)
T d1hmja_ 33 PVIQEIGAKEGDVVRVIRK 51 (68)
T ss_pred HHHHHHCCCCCCEEEEEEC
T ss_conf 8789819999958999975
No 7
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.18 E-value=13 Score=13.74 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=19.4
Q ss_pred EEEEEECHHHHHCCCCCCEEECCCCCCC
Q ss_conf 8123430989945799978982578997
Q gi|254780687|r 246 INLKKTTLKDVVTLKIGQVIPFLHREKT 273 (318)
Q Consensus 246 Lg~~~l~l~dil~L~vGDVI~L~~~~~~ 273 (318)
++.-......-.+|++||+|-|.....+
T Consensus 72 l~~GW~~Fv~~~~Lk~GD~~~F~~~~~~ 99 (117)
T d1wida_ 72 LTKGWSRFVKEKNLRAGDVVSFSRSNGQ 99 (117)
T ss_dssp EESSHHHHHHHTTCCTTCEEEEEECCSS
T ss_pred EECCHHHHHHHCCCCCCCEEEEEEEECC
T ss_conf 7457799888749997999999998189
No 8
>d1eika_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.06 E-value=15 Score=13.35 Aligned_cols=19 Identities=11% Similarity=0.420 Sum_probs=13.6
Q ss_pred CHHHHHCCCCCCEEECCCC
Q ss_conf 0989945799978982578
Q gi|254780687|r 252 TLKDVVTLKIGQVIPFLHR 270 (318)
Q Consensus 252 ~l~dil~L~vGDVI~L~~~ 270 (318)
|+...+++++|||+.+.++
T Consensus 44 Pva~~~g~k~GdvvkI~R~ 62 (77)
T d1eika_ 44 PVAKAIGAKRGDIVKIIRK 62 (77)
T ss_dssp HHHHGGGCCTTCEEEEEEE
T ss_pred HHHHHHCCCCCCEEEEEEC
T ss_conf 7245107868857999975
No 9
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.60 E-value=18 Score=12.90 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=7.6
Q ss_pred CCCCCCEEECCCCCCCEEE
Q ss_conf 5799978982578997389
Q gi|254780687|r 258 TLKIGQVIPFLHREKTCAI 276 (318)
Q Consensus 258 ~L~vGDVI~L~~~~~~~v~ 276 (318)
+|-|||+|.+.....-|+|
T Consensus 20 eLv~GDiv~l~~G~~vPaD 38 (115)
T d1wpga1 20 DIVPGDIVEVAVGDKVPAD 38 (115)
T ss_dssp GCCTTCEEEEETTCBCCSE
T ss_pred HCCCCCEEEECCCCEEEEC
T ss_conf 9889989999999999515
No 10
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}
Probab=21.47 E-value=18 Score=12.88 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=15.6
Q ss_pred HHHHHCCCCCCEEECCCCCC
Q ss_conf 98994579997898257899
Q gi|254780687|r 253 LKDVVTLKIGQVIPFLHREK 272 (318)
Q Consensus 253 l~dil~L~vGDVI~L~~~~~ 272 (318)
+.+.+.|.+||+|-...+..
T Consensus 177 lS~~~tL~pGDiI~TGTP~G 196 (221)
T d1nr9a_ 177 MSKFFTLKAGDVVLTGTPDG 196 (221)
T ss_dssp HTTTSCBCTTCEEECCCCSC
T ss_pred HHCCCEECCCCEEECCCCCC
T ss_conf 84799789997899589898
No 11
>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus furiosus [TaxId: 2261]}
Probab=21.30 E-value=12 Score=13.97 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECC
Q ss_conf 7989999999997408007999981234309899457999789825
Q gi|254780687|r 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 (318)
Q Consensus 223 ~~~~~~~~l~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~ 268 (318)
..+.|-..+......+++.+ .=++...+++||.|.+.
T Consensus 7 L~~~~F~~Ik~G~K~IE~Rl---------~d~kr~~ik~GD~I~F~ 43 (110)
T d1s04a_ 7 LQEEFLELIKLRKKKIEGRL---------YDEKRRQIKPGDVISFE 43 (110)
T ss_dssp CCHHHHHHHHHTTSSCCCCC---------CCHHHHHCCSSSCEEET
T ss_pred CCCCHHHHHHCCCCEEEEEE---------CHHHHHHCCCCCEEEEE
T ss_conf 57015799876897899980---------65668638999999994
Done!