BLAST/PSIBLAST alignment of GI: 254780687 and GI: 116250474 at iteration 1
>gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 316
>gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 316
 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 168/304 (55%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P LLA+LTG LGD+  + KI SS G +Y +F P + K +  LDV ++Y  C+ G  +H
Sbjct: 13  MDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI +  +R LS +E 
Sbjct: 73  LIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA     +I+ VL   ++      P+L   Y  D   +      +EF   INM++T+  
Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEFAAAINMSITLAG 192

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           + S F LI+PQ  LLKT +     + ++ + S +  +    +  + +V ++ +I L+  T
Sbjct: 193 IVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHVTLEAKIRLQDLT 252

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           L+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + ++
Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312

Query: 313 NFLH 316
           + ++
Sbjct: 313 HLMN 316