BLAST/PSIBLAST alignment of GI: 254780687 and GI: 116250474 at iteration 1
>gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 316
>gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 316
Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 168/304 (55%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV ++Y C+ G +H
Sbjct: 13 MDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+I N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E
Sbjct: 73 LIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
LA +I+ VL ++ P+L Y D + +EF INM++T+
Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEFAAAINMSITLAG 192
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
+ S F LI+PQ LLKT + + ++ + S + + + + +V ++ +I L+ T
Sbjct: 193 IVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHVTLEAKIRLQDLT 252
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++
Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312
Query: 313 NFLH 316
+ ++
Sbjct: 313 HLMN 316