BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780687|ref|YP_003065100.1| flagellar C-ring protein
[Candidatus Liberibacter asiaticus str. psy62]
         (318 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|302878292|ref|YP_003846856.1| flagellar motor switch protein FliM [Gallionella capsiferriformans
           ES-2]
 gi|302581081|gb|ADL55092.1| flagellar motor switch protein FliM [Gallionella capsiferriformans
           ES-2]
          Length = 329

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 101/312 (32%), Gaps = 8/312 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTI---EKISSSLGYLYKKFLPKIFKEKMDLD 57
           + G++  +   P   +   R       ++ +         +   + +         +   
Sbjct: 17  VNGETEDEKAHPEADVGEIRPYNLASQERIVRGRMPTMEIINERFARLFRIGLFNFIRRT 76

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
            +IS    +  KF   + +       +         N       NLV  +++N+ G    
Sbjct: 77  PEISVGPVRVLKFGEFVRNLAVPTNLNIIQPKPLRGNGLFIFDPNLVFLVVDNMFGGDGR 136

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
              ++  R  +  E+++ ++ +A +     +   T                 +       
Sbjct: 137 FHTRVEGREFTQTEQRIIQKMLAVVFETYAKAWETVYPLEFEFVRSEM--NPQFANIATP 194

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTY 236
           NE V     ++ +     +F + +P  TL     +   + Q +     +  +   +R+  
Sbjct: 195 NEVVIVTTFDIELGGNGGAFHICMPYSTLEPVKDLLFNNIQGEHLAVDKRWLQLLSRQVQ 254

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
              + +   +     TL+ V+ +++G VIP           S +G  I  C+ G     Y
Sbjct: 255 CAEIELAATLGQANITLERVLKMRVGDVIPLN--VDENITASIDGVPIMECKYGVFNNQY 312

Query: 297 TIRITDRINFDQ 308
            ++I   +  ++
Sbjct: 313 ALKIVKMLTTNE 324


>gi|152980580|ref|YP_001353124.1| flagellar motor switch protein FliM [Janthinobacterium sp.
           Marseille]
 gi|151280657|gb|ABR89067.1| FliM flagellar motor switch protein [Janthinobacterium sp.
           Marseille]
          Length = 332

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 91/306 (29%), Gaps = 11/306 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
              P +     R+                +   + + L       +    ++S    +  
Sbjct: 33  GVRPYNLATQERIVRG------RMPTLEIINERFSRLLRIGLFNFLHRSAEVSIGPVRVS 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K+S  I +       +   +        I    NLV  L++NL G       ++  R  +
Sbjct: 87  KYSEFIRNLVVPTNLNLIHMKPLRGTGLIVLDPNLVFLLVDNLFGGDGRFHTRVEGRDFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +R +  I     +            E        +       NE V      +
Sbjct: 147 QTEQRIIQRILGIIFETYAKSWEPVYPVE--FEYIRSEMNTQFANIATPNEVVVATTFTI 204

Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            +  V+       P   +     +   S Q ++    +  I    ++     V I   + 
Sbjct: 205 ELGPVSGDMHFCTPYAMIEPIRDLLTSSMQGETLEMDKRWIRLMTQQIQTAEVEILANMG 264

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             K TL D++ ++ G +IP             +   +  C  G++   Y +R+   I   
Sbjct: 265 SAKVTLGDILNMQKGDIIPIAVP--DTITAEVDSVPVMECSYGKLNGQYALRVEKLIYSA 322

Query: 308 QKSLKN 313
             + + 
Sbjct: 323 NDTTQG 328


>gi|91776323|ref|YP_546079.1| flagellar motor switch protein FliM [Methylobacillus flagellatus
           KT]
 gi|91710310|gb|ABE50238.1| flagellar motor switch protein FliM [Methylobacillus flagellatus
           KT]
          Length = 335

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 97/304 (31%), Gaps = 7/304 (2%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
             +T  L P  +        ++    +      +   + + L       +    ++S   
Sbjct: 23  EDDTPALDPAGVREYNLATQERIVRGRMPTLEIINERFARLLRIGLFNFLRRTTEVSVGP 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S  I +       +   +        +     LV  +++NL G       ++  
Sbjct: 83  VKISKYSEFIRNLVVPTNLNLVQMKPLRGTALMVFDPTLVFLIVDNLFGGDGRFHTRVEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +A +     +      +     E        +       NE V + 
Sbjct: 143 RDFTQTEQRIIQRVLAIVFETYAKSWEPVYKLE--FEYIRSEMNTQFANIATPNEVVVST 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
             N+ + + +       P   +     +  S  Q ++    +  +    ++     V + 
Sbjct: 201 TFNIELGSASGEIHFCFPYSMIEPIRDLLTSPLQGEALGVDKRWVRLMTQQIQSAEVMLI 260

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + TL D++ +K+G VIP             +   +  C+ G     Y +R+   
Sbjct: 261 ADLAKAEMTLGDILNMKVGDVIPL--SISEEIEAKVDNVPVMQCKYGVFNGQYALRVEKL 318

Query: 304 INFD 307
           +  +
Sbjct: 319 LRSN 322


>gi|325981184|ref|YP_004293586.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212]
 gi|325530703|gb|ADZ25424.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212]
          Length = 325

 Score =  265 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 100/309 (32%), Gaps = 11/309 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ ++        +     R+                +   + + L       M   VDI
Sbjct: 25  VKEEAEKGGIRNYNLATQERIVRG------RMPTYEIINERFARLLRIGLFNFMRRTVDI 78

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +    +  KFS  + +       +   +              L+  +++NL G       
Sbjct: 79  AVGPVKVIKFSEFVRNLVVPTNLNMVHMKPLRGTALFVFDPELIFLIVDNLFGGDGRYHT 138

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++ +R +  +     +   +        E        +  T    NE 
Sbjct: 139 RVEGRDFTQTEQRIIQRLLGVVFDEYEKSWKSVYPIQ--FEYVRSEMNPQFATIATPNEV 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V  +  ++ + N      + IP   +        S+ Q       +  I   +++     
Sbjct: 197 VVCVTFDIDMGNKGGGLHVCIPYSMVEPIRDTLYSALQGDHLEVDKRWIKLLSQQVQGAE 256

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +   K T + +++++ G +IP    +     +  +G  +  C  G +  +Y +R
Sbjct: 257 VELVANLGGAKVTFEQILSMQSGDIIPLEIPKS--ISVCVDGVPVMDCRYGTMNGHYALR 314

Query: 300 ITDRINFDQ 308
           +   I+  +
Sbjct: 315 VNSMISRSE 323


>gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105]
 gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105]
          Length = 348

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 106/312 (33%), Gaps = 11/312 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H+   P +     R+                +   + + +       M    +IS    
Sbjct: 30  THEGVRPYNLATQERIVRG------RMPTLEIINERFARLIRIGLFNFMRRSPEISVGPV 83

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +  K++  I +       +  ++     N       +LV  +++NL G       ++  R
Sbjct: 84  KVLKYNEFIRNLVVPTNLNIMAMKPLRGNALFIFDPSLVFAVIDNLFGGDGRFHTRVEGR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++  R +  I     +  +      P  E      + +       +E V T +
Sbjct: 144 DFTQTEQRIIARMLEVIREEFVKAWAPVFPLKP--EYLRSEMHTQFANIATPSEIVVTTS 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ +     S  + IP  T+     +   S Q       +  +    ++     V++  
Sbjct: 202 FSIELGAGGGSLHICIPYSTMEPIRDLLYSSMQGDQAEPDKRWVTMLKKQVQMAEVDLVA 261

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +   + T+ D++ L+IG VIP             +   +++C  G  G  Y +++ + +
Sbjct: 262 SLASTQLTVADIMELRIGDVIPIE--IDKVIEARVDNVPVFNCSYGTSGGQYALKVEEVL 319

Query: 305 NFDQKSLKNFLH 316
               +S  + L+
Sbjct: 320 AVSNESHADALN 331


>gi|82702481|ref|YP_412047.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC
           25196]
 gi|82410546|gb|ABB74655.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC
           25196]
          Length = 326

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 93/305 (30%), Gaps = 11/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
             + +    P +     R+                +   + + L       M    +++ 
Sbjct: 27  QSTANPGFRPYNLATQERIVRG------RMPTLEIINERFARLLRLGLFNFMRRSANVTA 80

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              +  KFS  + +       +   +              LV  +++NL G     +P+ 
Sbjct: 81  GPVRVMKFSEFVRNLAAPSNLNLVHIKPLRGTSLFVFDPTLVFLVVDNLFGGDGRFLPKT 140

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++ +R +  +     +            E        +       NE V 
Sbjct: 141 EGRDFTQTEQRIIQRLLNLVFDSYGKSWHPVYPIE--FEYLRAETNTQFANVATPNEVVV 198

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
                +   +V     + +P   L     +  S+ Q ++    +  +   +++     V 
Sbjct: 199 ATTFEVNFGSVVGEMHICMPYSILEPIRDLLSSTLQGEALEVDKRWVGRLSKQVQSAEVT 258

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +   +  L  ++ +K+G VIP           S +G  +  C+ G     Y +R+ 
Sbjct: 259 LLANLTHAQVRLDQILNMKVGDVIPLDIP--EFVTASVDGVPVMECKYGISNGRYALRME 316

Query: 302 DRINF 306
             +  
Sbjct: 317 KMLAS 321


>gi|188586031|ref|YP_001917576.1| flagellar motor switch protein FliM [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350718|gb|ACB84988.1| flagellar motor switch protein FliM [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 333

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 101/314 (32%), Gaps = 14/314 (4%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
           + Q   +   P      A+        K   +    +   + + L       +   V+I 
Sbjct: 28  KQQDTQQKVKPYDFRRPAKF------SKDQIRTLQMINENFARLLSTYLSAYLRSYVEIE 81

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             S     +   + S     +    S         +  + N+   +++ L+G   ET   
Sbjct: 82  LASVDQVTYDEFMRSLTNPTIMGIFSAPPMEGKSLMEMNPNIAFAVIDRLMGGPGETFES 141

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
                L+ +E+ +A++   ++   + +      E  P  E     +  +       NE V
Sbjct: 142 TG--ELTEIEEAVARKIFNRMLDSMLEAWKNVGELEPEFERIE--NNPQFTQIISPNEIV 197

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS----QNKSENQSEDLIDPFARKTYQ 237
             +  ++ +      F + +P   L        +         +  +E+       + ++
Sbjct: 198 AVVAFSVKVGEAEGLFNVCLPYIFLEPVIDRLSARFWFATGHQKKITEEESQALKNRLHK 257

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +   + ++K+ + L+ G VI      ++   L    K  +  + G +     
Sbjct: 258 TQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTKFKGKPGSIKNKLA 317

Query: 298 IRITDRINFDQKSL 311
           ++IT  +     SL
Sbjct: 318 VQITQIVREGDDSL 331


>gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
           ATCC 25259]
          Length = 334

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 94/297 (31%), Gaps = 11/297 (3%)

Query: 11  SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
            P +     R+                +   + + L       +   V+IS    +  K+
Sbjct: 36  RPYNLATQERIVRG------RMPTLEIINERFARLLRIGLYNFLRRGVEISVGPVRVSKY 89

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
           S  I +       +            +  + +LV  +++NL G       ++  R  +  
Sbjct: 90  SEFIRNLVVPTNLNLVQFKPLRGTALMIFNPDLVFLMVDNLFGGDGRFHTRVEGRDFTQT 149

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           E ++ +R +  +     +                     +       NE V  +   + +
Sbjct: 150 EHRIIQRILNIVFEAYGKSWEPVYPIEFEFIRSEM--NTQFANIATPNEVVVAVTFAIEL 207

Query: 191 ENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
             ++      +P   +     +   S Q ++    +  I    ++     V I   +   
Sbjct: 208 GQISGEMHFCMPYSMIEPIKDLLTSSLQAENLEVDKRWIRLMRQQIQLAEVEIVADLGTA 267

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + +L+D+V LK+G VIP             +G  +  C  G+    YT+R+   ++ 
Sbjct: 268 EVSLRDIVNLKVGDVIPLDIPP--TIEAKVDGVPVMECAYGKFNGQYTLRVEKLLST 322


>gi|71906405|ref|YP_283992.1| flagellar motor switch protein FliM [Dechloromonas aromatica RCB]
 gi|71846026|gb|AAZ45522.1| Flagellar motor switch protein FliM [Dechloromonas aromatica RCB]
          Length = 338

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 39/312 (12%), Positives = 96/312 (30%), Gaps = 7/312 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
           + G++     S      +        ++    +      +   + ++L       M  + 
Sbjct: 18  VTGETDEPEESEGEGAGVRAYNIGTQERIVRGRMPTLELVNERFARYLRIGLFNYMHRNA 77

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS    +  K+S  I +       +                 NLV  +++N+ G     
Sbjct: 78  EISVGPIRVQKYSEFIRNLVVPTNLNLVIAKPLRGTALFVFDPNLVFLVVDNMFGGDGRF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  +  E+++ +  +  +    ++      + +   E        +       +
Sbjct: 138 HTRVEGRDFTPTEQRIIQGLLNVVFTEYSKSWKPVYDIN--FEYIRSEMNSQFANIATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQ 237
           E V +    +      +   +  P   L     +  S  Q+   +  +  I    ++   
Sbjct: 196 EIVVSTTFTLEFGGATADMHICFPYSMLEPIRDLLYSTMQSDQLSSDKRWIGTLRKQLQG 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V I   +   K TL  ++ LK+G VIP             +   +  C  G+    Y 
Sbjct: 256 AEVEIVALLGSGKITLGQILKLKVGDVIPLHIP--DKIEALVDSVPLMECTYGQQSGQYA 313

Query: 298 IRITDRINFDQK 309
           +++   I    +
Sbjct: 314 LKVDRFIASSPE 325


>gi|253996306|ref|YP_003048370.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8]
 gi|253982985|gb|ACT47843.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8]
          Length = 334

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 94/311 (30%), Gaps = 12/311 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S  +     +     R+                +   + + +       +   V++S   
Sbjct: 29  SEAEGVRDYNLATQERIVRG------RMPTLEIINERFARLVRIELFNFLRRTVEVSVGP 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S  I +       +   +        +     LV  +++N+ G       ++  
Sbjct: 83  VRITKYSDFIRNLVVPTNLNLVQMKPLRGTALMVFDPTLVFLVVDNMFGGDGRFHTRVEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +A +     +            E        +       NE V   
Sbjct: 143 RDFTQTEQRIIQRILAIVFETYAKSWEPVYPIE--FEYLRSEMNTQFANIATPNEVVVVT 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
             N+ +   +      +P   +     +  S  Q +     +  +    ++     + I 
Sbjct: 201 TFNVELGPASGEIHFCMPYSMVEPIRDLLTSPLQGEVLGADKRWVKLMTQQVQAAEIEIV 260

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   +  L  V+ +K+G VIP             +G  +  C+ G     Y +R+   
Sbjct: 261 ADLATTEMHLGKVLNMKVGDVIPISM--DDAIEAKVDGVPVMLCKYGLFNGQYALRVEKL 318

Query: 304 INFDQ-KSLKN 313
           +  +  + +K 
Sbjct: 319 LRSNSTEYIKG 329


>gi|302343739|ref|YP_003808268.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM
           2075]
 gi|301640352|gb|ADK85674.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM
           2075]
          Length = 328

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 100/314 (31%), Gaps = 6/314 (1%)

Query: 1   MRGQSIHKNTSPL---HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57
           M G  I   T        +++  LT +    +        +   + +         +   
Sbjct: 17  MSGGEIEVETDAGPEADGVIVYDLTNQDRIIRGRMPTLEIINDRFARLFRTTLSSALRKI 76

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           VD++ TS    KF   + S           +     +      + LV  L+E   G +  
Sbjct: 77  VDMTTTSVDMVKFGEFMRSLPVPTSLHIFKMDPLRGHAIFVLESKLVFNLVETFFGGAGG 136

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
              ++  R  + +E++L ++ +      +        E +  +         +  +    
Sbjct: 137 GNVKIEGRDFTAIEQQLTRKVVMLALKDMESAWKPVHEVT--MVYSRTEINPQFASIVPP 194

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTY 236
            + V  +   + +E+ A +  + IP  T+           Q+       + +  F ++  
Sbjct: 195 TDVVIVVKFELEMEHTAGTVTVCIPYSTIEPIRTKLYAGFQSDQLEVDHEWMRRFRKQLR 254

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +  V     +   + T  D++ LK+G V+          +    G   +    G++  N 
Sbjct: 255 EAEVEFTVELGRTELTSGDLLQLKVGDVLQLDSDINGHLVAMVEGVPKFLGRPGQMRGNK 314

Query: 297 TIRITDRINFDQKS 310
             R+    ++  + 
Sbjct: 315 AFRVEGFKDYGAEI 328


>gi|134095084|ref|YP_001100159.1| flagellar motor switch protein FliM [Herminiimonas arsenicoxydans]
 gi|55977142|gb|AAV68363.1| FliM [Herminiimonas arsenicoxydans]
 gi|133738987|emb|CAL62035.1| Flagellar motor switch protein FliM [Herminiimonas arsenicoxydans]
          Length = 332

 Score =  262 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 93/306 (30%), Gaps = 11/306 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
              P +     R+                +   + + L       +    ++S    +  
Sbjct: 33  GVRPYNLATQERIVRG------RMPTLEIINERFSRLLRIGLFNFLHRSAEVSIGPVRVS 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K+S  I +       +   +        I    NLV  L++NL G       ++  R  +
Sbjct: 87  KYSEFIRNLVVPTNLNLIHMKPLRGIGLIVLDPNLVFLLVDNLFGGDGRFHTRVEGRDFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +R +  I     +            E        +       NE V      +
Sbjct: 147 QTEQRIIQRILGIIFETYAKSWEPVYPVE--FEYIRSEMNTQFANIATPNEVVVATTFTI 204

Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            +  V+      +P   +     +   S Q ++    +  I    ++     V I   + 
Sbjct: 205 ELGPVSGDLHFCVPYSMIEPIRDLLTSSMQGETLEMDKRWIRLMTQQIQTAEVEILANMG 264

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             K TL D++ +KIG +I              +G  +  C  G++   Y +R+   I   
Sbjct: 265 SAKVTLGDILNMKIGDIISIAVP--EQVTAEVDGVPVMECSYGKLNGQYALRVEKLIYSA 322

Query: 308 QKSLKN 313
             + + 
Sbjct: 323 NDTTQG 328


>gi|329901244|ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549176|gb|EGF33768.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 333

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 11/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P +     R+                +   + + L       +    ++S    +
Sbjct: 31  QSGVRPYNLATQERIVRG------RMPTLEIINERFARLLRIGLFNFLRRSAEVSIGPVR 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             K+S  I +       +   +        +    NLV  +++NL G       ++  R 
Sbjct: 85  VSKYSEFIRNLVVPTNLNLVHMKPLRGTVLMVFDPNLVFLIVDNLFGGDGRFHTRVEGRD 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +A +     +            E        +       NE V     
Sbjct: 145 FTQTEQRIIQRILAIVFENYAKSWEPVYPVE--FEYIRSEMNTQFANIATPNEVVICTTF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +  V+      IP  T+     I   S Q ++    +  I    ++     V I   
Sbjct: 203 TIELGPVSGEMHFCIPYSTIEPIRDILTSSLQGETLEVDKRWIRLMTQQIQTAEVEIIAD 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
             + ++    ++ +K+G +IP         +   +G  +  C  G+    Y +R+   + 
Sbjct: 263 FGVARSNFGAILNMKVGDIIPLAVP--DVVLAKVDGVPVMECTYGKFNGQYALRVEKLLA 320

Query: 306 F 306
            
Sbjct: 321 Q 321


>gi|253998475|ref|YP_003050538.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4]
 gi|313200550|ref|YP_004039208.1| flagellar motor switch protein flim [Methylovorus sp. MP688]
 gi|253985154|gb|ACT50011.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4]
 gi|312439866|gb|ADQ83972.1| flagellar motor switch protein FliM [Methylovorus sp. MP688]
          Length = 334

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 92/300 (30%), Gaps = 11/300 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                +     R+                +   + + L       M   V++S    +  
Sbjct: 33  GVREYNLATQERIVRG------RMPTLEIINERFARLLRIGLFNFMRRSVEVSVGPVRIS 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K+S  + +       +   ++       +    +LV ++++N+ G       ++  R  +
Sbjct: 87  KYSEFVRNLVVPTNLNLVHMNPLRGTGLMVFDPSLVFSIVDNMFGGDGRFHTRIEGRDFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +R +A +     +      +     E        +       NE +     ++
Sbjct: 147 QTEQRIIQRVLAIVIENYEKSWEPVYQVK--FEYLRSEMNTQFANIATPNEVIVATTFSI 204

Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            +           P   +     +   S Q +     +  +    ++     V +   + 
Sbjct: 205 ELGPAGGEIHFCFPYSMIEPVRDLLTSSLQGEVLGVDKRWVRLMTQQIQAAEVELVANLA 264

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             +  L DV+ +K+G VIP             +   +  C+ G     Y++R+   +  +
Sbjct: 265 KARMQLGDVLNMKVGDVIPLN--ISETIEAHVDNVPVMECKYGVFNGQYSLRVEKLLRAN 322


>gi|297538201|ref|YP_003673970.1| flagellar motor switch protein FliM [Methylotenera sp. 301]
 gi|297257548|gb|ADI29393.1| flagellar motor switch protein FliM [Methylotenera sp. 301]
          Length = 334

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 95/311 (30%), Gaps = 12/311 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +    +     R+                +   + + +       +   V++S   
Sbjct: 29  SNAGDVRDYNLATQERIVRG------RMPTLEIINERFARLVRIELFNFLRRTVEVSVGP 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S  + +       +   +        +     LV  +++N+ G       ++  
Sbjct: 83  VRITKYSDFVRNLVVPTNLNLIQMKPLRGTALMVFDPTLVFLVVDNMFGGDGRFHTRVEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +  +    ++            E        +       NE V  +
Sbjct: 143 RDFTQTEQRIIQRILNIVFETYSKSWEPVYPVQ--FEYMRSEMNTQFANIATPNEVVIAV 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
             N+ +   +       P   L     +  S  Q +     +  +    ++     V I 
Sbjct: 201 TFNVELGPASGEIHFCFPYSMLEPLRDMLSSPLQGEVLGTDKRWVKLMTQQVQAAEVEIV 260

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +      + DV+ +K+G V+P     +       +G  +  C+ G     Y +R+   
Sbjct: 261 ADLAKTNMMIGDVLNMKVGDVVPLN--IEESIEAQVDGVPVMLCKYGMFNGQYALRVEKL 318

Query: 304 INFDQ-KSLKN 313
           +  +  + +K 
Sbjct: 319 LRSNSTEYIKG 329


>gi|254491591|ref|ZP_05104770.1| flagellar motor switch protein FliM [Methylophaga thiooxidans
           DMS010]
 gi|224463069|gb|EEF79339.1| flagellar motor switch protein FliM [Methylophaga thiooxydans
           DMS010]
          Length = 340

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 86/300 (28%), Gaps = 11/300 (3%)

Query: 11  SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
                    R+                +   + ++L     + +    +IS +  Q  KF
Sbjct: 38  RDYDFGNEERIIRG------RMPTLEMINERFGRYLRISLFDMLRRSAEISVSGIQVMKF 91

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
           S  +H+       +   L        I     LV T+L+N  G       ++  R  +  
Sbjct: 92  SEYMHTLFVPTSLNLIHLHPLRGTGLIVLEPKLVFTILDNYFGGEGRFQARIEGREFTAT 151

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           E ++ +  +      L +  S   E              +       +E V     ++ +
Sbjct: 152 ELRVIRMVLNLCFTDLTEAWSPVMEVDFEFV--SHEVNPQFANIVSPSEVVVISTFHVEL 209

Query: 191 ENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           +       L  P   L     +  +  Q+               +    +V I  ++   
Sbjct: 210 DGGGGDIHLTFPYSMLEPIRELLDTGLQSDRTADDGRWSKAMREELMVADVEIWAKLAET 269

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             TL  +  LK G +IP    +    +       ++    G   +   ++I + I   + 
Sbjct: 270 SLTLAQIHKLKTGDIIPIQMPKN--VVAMVEDVPMFRASYGEHNEKAALKIAEVIEHPKD 327


>gi|257095345|ref|YP_003168986.1| flagellar motor switch protein FliM [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047869|gb|ACV37057.1| flagellar motor switch protein FliM [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 334

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P       R+                +   + ++L       M    +IS  S +
Sbjct: 32  DDGPRPYDLGTQERIVRG------RMPTLELVNERFARYLRIGLFNYMHRSTEISVGSIR 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             K+S    +       +  +              +LV  +++N+ G       ++  R 
Sbjct: 86  VQKYSEFTRNLVVPTNLNLINAKPLRGTALFVFDPSLVFLVVDNMFGGDGRFHTRVEGRD 145

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ K  +  +    ++      + +   E        +       +E V     
Sbjct: 146 FTATEQRIIKGLLGVVFTEYSRSWKPVYDLT--FEYVRSEMNSQFANIATPSEIVVATTF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++      +   +  P   +     +   + Q+   +     +    ++     V I  R
Sbjct: 204 SIEFGGSTADLHICFPYSMIEPIRDLLFSTMQSDQLSTDRRWVIMLRKQLTNAEVEITAR 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L+ ++ +K+G ++P         I   +   +  C  G+ G  Y I+I   + 
Sbjct: 264 LATATVSLRQILEMKVGDIVPIDIP--EKVIAQVDDVPLMECRYGQQGGQYAIKIDHFMT 321

Query: 306 FD 307
            +
Sbjct: 322 IE 323


>gi|186477685|ref|YP_001859155.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815]
 gi|184194144|gb|ACC72109.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815]
          Length = 332

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 93/308 (30%), Gaps = 11/308 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           QS      P +     R+                +   + + L       M    +IS  
Sbjct: 29  QSDRAGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRTAEISVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K+S    +       +   +             NLV  +++NL G       ++ 
Sbjct: 83  PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++  + +  +         + +    + E      + +       NE V  
Sbjct: 143 GREFTQTEQRIIHKLLNLVFEHYTAAWKSVRPL--SFEYTRSEMHTQFANVATPNEIVIV 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              ++       +  + +P   +     +  S  Q ++       +   +++     V +
Sbjct: 201 TQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     T ++++ +K G V+P             +G  +  C  G     Y +R+  
Sbjct: 261 TADLAQIPVTFQEILNMKAGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318

Query: 303 RINFDQKS 310
            I+  ++ 
Sbjct: 319 MISAAEQM 326


>gi|90406812|ref|ZP_01215004.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
 gi|90312049|gb|EAS40142.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
          Length = 352

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 97/308 (31%), Gaps = 11/308 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
            G +   +          R+                +   + + L       +    ++S
Sbjct: 31  DGGAEDDSHIHFDFSSQDRIVRG------RMPTLELVNERFARHLRISLFNMLRHTAEVS 84

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               Q  KF   +H+       +            +     LV  L+EN  G       +
Sbjct: 85  INGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHAK 144

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ +  +  I        +     + + E                 E +
Sbjct: 145 IEGREFTPTERRIIQMLLKIIFEDYKDAWAPV--MTADFEYLDSEVNPAMANIVSPTEVI 202

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
              + ++ ++     F + +P   L     +  +  Q+  E+  +        +   ++V
Sbjct: 203 VVNSFHIELDGGGGDFHIAMPYSMLEPIRELLDAGVQSDKEDTDQRWSQALEDEIMDVDV 262

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +  ++  K+  L+D++   +G +IP         ++   G   +  +LG+   N  ++I
Sbjct: 263 YLTAKLLEKQLPLRDMINWSVGDIIPVELP--EELLVCVEGLPSFHAKLGKSNDNLALKI 320

Query: 301 TDRINFDQ 308
            DRI   +
Sbjct: 321 IDRIKRPE 328


>gi|295399820|ref|ZP_06809801.1| flagellar motor switch protein FliM [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111668|ref|YP_003989984.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1]
 gi|294978223|gb|EFG53820.1| flagellar motor switch protein FliM [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216769|gb|ADP75373.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1]
          Length = 334

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 106/316 (33%), Gaps = 13/316 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   + + L   F  ++   V I
Sbjct: 29  LKKEETGKRVKVYDFKRALRF------SKDQIRSLTRIHENFARLLTTFFAAQLRTYVQI 82

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S  S     +   I S  +    +   +   + +  +  + N+   +L+ ++G    ++ 
Sbjct: 83  SVASADQIPYEEFIRSIPKMTFLNVFEVPPLNGHILMEVNPNIAYAMLDRVMGGKGTSVN 142

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++ N  L+ +E ++      +  + L     +  E  P   DF      +       N+ 
Sbjct: 143 KIDN--LTEIETRIISNLFDKAFSNLRDAWESVAEIDPVFTDFEV--NPQFLQMISPNDT 198

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  I++N  I   +    + IP   L             Q + +  S +  +   R+   
Sbjct: 199 VVVISLNTQIGETSGMMNICIPYVVLEPIIPKLSVHYWMQAQKKESSPEETEALERRIRF 258

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + I   +     T++D + L++G VI      +   ++       ++ + G+  K   
Sbjct: 259 AKLPIIAELGTATITIQDFLQLEVGDVIELDQSIQQPLLIKVGDIPKFTGQPGKRNKRLA 318

Query: 298 IRITDRINFDQKSLKN 313
           ++I D     +     
Sbjct: 319 VQILDTFKGAENYDDE 334


>gi|88813208|ref|ZP_01128448.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
 gi|88789530|gb|EAR20657.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
          Length = 336

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
             S        R+                +   + + L       +    ++S    +  
Sbjct: 35  GISAYEFQFQDRIVRG------RMPTLEMINERFARLLRTGLFNMLRKTAEVSVVGVELL 88

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KFS  +H+       +   +              LV  L++N  G       ++  R  +
Sbjct: 89  KFSEYVHTLYLPTSLNLVKVPPLRGTGLCVLDPKLVFILVDNFFGGDGRYFSKIEGREFT 148

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++ ++ + Q  A L +  +         E        +       +E V     ++
Sbjct: 149 PTETRVIRKVLEQGFADLREAWNPVLPVD--FEFLNMEVNPQFANIVSPSEAVVVSRFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            +        + +P   +     +  +  Q+   +  +  +     +     V +  R+ 
Sbjct: 207 ELNGGGGDLHITLPYTMIEPVRDVLSAGVQSDRNDVDQRWVRSLREEMKSAPVRLSCRLT 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             + +L +++ L+ G +IP         +L A    +    LG  G N  ++IT+ I   
Sbjct: 267 EARVSLHELMRLQPGDIIPIEMP--ETVVLRAAEVPVLRGRLGCSGGNVAVKITEPIRAP 324

Query: 308 Q 308
           Q
Sbjct: 325 Q 325


>gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
 gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
          Length = 336

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 99/306 (32%), Gaps = 11/306 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +       P +     R+                +   + ++L       M  + ++S  
Sbjct: 29  EVEQGGVRPYNLATQERIVRG------RMPTMELINERFARYLRIGLFNYMHRNAEVSVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K++  + +       +            +    NLV  +++N+ G       ++ 
Sbjct: 83  PIKVQKYAEFVRNLVVPTNLNLVLGKPLRGTGLVVFDPNLVFLVVDNMFGGDGRFHTRVE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++ +  +  +     +  +   +    LE        +       +E V +
Sbjct: 143 GRDFTPTEQRIIQGMLNVVFTEYAKAWAPVFKLE--LEYVRSEMNSQFANIATPSEIVVS 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
            + ++ +    +   +  P   +     +  S  Q+    Q    I   +R+     V +
Sbjct: 201 TSFSLELGGAQAEMHICFPYSMVEPIRDLLYSTMQSDHLTQDRRWITLLSRQLQTAEVEL 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +   + TL+D+V +++G VIP           + +G  +  C  G     +  ++  
Sbjct: 261 TCNLGTARVTLRDIVNMRVGDVIPLQ--VSELLQATVDGVPVLECRYGTQNGQFAFKVDR 318

Query: 303 RINFDQ 308
            +  D+
Sbjct: 319 FLGPDE 324


>gi|300311368|ref|YP_003775460.1| flagellar motor switch protein FliM [Herbaspirillum seropedicae
           SmR1]
 gi|300074153|gb|ADJ63552.1| flagellar motor switch FliM protein [Herbaspirillum seropedicae
           SmR1]
          Length = 334

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 84/297 (28%), Gaps = 11/297 (3%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
               +     R+                +   + +         +    +IS    +  K
Sbjct: 35  VRTYNLATQERIVRG------RMPTLEIINERFARLFRIGLFNFIHRTAEISVGPVKVSK 88

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           +S  I +       +   +  +     +      V  L++N+ G       ++  R  + 
Sbjct: 89  YSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDPQFVFMLVDNMFGGDGRFHTRIEGREFTP 148

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E+++  R +        +                     +       NE V +    + 
Sbjct: 149 TEQRIIMRVLEITFETYAKSWEPIYPIEFEFIRSEM--NTQFANIATPNEVVVSTTFTVE 206

Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
           +  V+    +  P   +         S Q ++    +  I    ++     V +      
Sbjct: 207 LGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALEVDKRWIRLMKQQIQTAEVELIVNFGT 266

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
            +    D++ +++G VIP      T      +G  +  C  G+    Y +R+   ++
Sbjct: 267 ARVNFTDLLHMQVGDVIPLQ--TNTTVEAQVDGVPVMECSYGQSNGQYALRVEKLLS 321


>gi|134294173|ref|YP_001117908.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4]
 gi|134137330|gb|ABO53073.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4]
          Length = 332

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 88/311 (28%), Gaps = 11/311 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +  Q       P +     R+                +   + + L       M    +I
Sbjct: 26  IDEQRDTSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +  +  K+S    +       +   +             NLV  +++NL G       
Sbjct: 80  SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++  + +  +         + +               +       NE 
Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++       +  + +P   +     +  S  Q ++       +   +++     
Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMVEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +     T + ++ L+ G V+P             +G  +  C  G     Y +R
Sbjct: 258 VELTADLAEIPATFEKILNLRAGDVLPLE--IDDTITAKVDGVPVMECGYGIFNGQYALR 315

Query: 300 ITDRINFDQKS 310
           +   I+     
Sbjct: 316 VQKMISAGDTM 326


>gi|237653569|ref|YP_002889883.1| flagellar motor switch protein FliM [Thauera sp. MZ1T]
 gi|237624816|gb|ACR01506.1| flagellar motor switch protein FliM [Thauera sp. MZ1T]
          Length = 336

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 97/303 (32%), Gaps = 11/303 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           +   P +     R+                +   + ++L       M  + ++S    + 
Sbjct: 33  EGVRPYNLATQERIVRG------RMPTLELINERFARYLRIGLFNYMHRNAEVSAGPIKV 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            K++  + +       +  +         +    NLV  +++N+ G       ++  R  
Sbjct: 87  QKYAEFVRNLVVPTNLNLITAKPLRGTGLVVFDPNLVFLVVDNMFGGDGRFHTRVEGRDF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++ +  +  + A   +  +      P           +       +E V + +++
Sbjct: 147 TPTEQRIIRGMLDVVFAEYVRAWAPVFNLQPEFIRSEM--NSQFANIATPSEVVVSTSLS 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           +      +   +  P   L     +   S Q+         I    R+     V +    
Sbjct: 205 VEFGGSQAEMHICFPYSMLEPIRDLLYSSMQSDHLTSDRRWIKLLTRQLQTAEVELACSF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              + +L+D+V +++G VIP   +         +G  ++ C  G     Y +R+   I  
Sbjct: 265 GTARVSLRDIVDMRVGDVIPLAVQP--VLQAEVDGVPVFECRQGTRNGRYALRVERFITA 322

Query: 307 DQK 309
           +  
Sbjct: 323 EDN 325


>gi|188592199|ref|YP_001796797.1| flim: flagellar motor switching and energizing component
           [Cupriavidus taiwanensis LMG 19424]
 gi|170938573|emb|CAP63560.1| FliM: flagellar motor switching and energizing component
           [Cupriavidus taiwanensis LMG 19424]
          Length = 339

 Score =  255 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 10/302 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P +     R+                +   + + L       +    DIS  S +
Sbjct: 35  EGGVRPYNLATQERIIRG------RLHTLEIINERFARSLRTALFNFIRRGADISVGSVR 88

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF     +       +   L             NLV  +++NL G       ++  R 
Sbjct: 89  IEKFGDFARNLPMPTNLNLVHLKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEGRD 148

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +            T        E      + K       NE V T   
Sbjct: 149 FTQTEQRIIQRMLELTLTSYGNAWRTVHPIE--TEYIRSEMHPKFANVATHNEAVVTTAF 206

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           ++ +  V     + +P   +     + ++     +   +  +   + +     V +    
Sbjct: 207 HIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDEKEVDKGWVTQLSTQLRAAEVELVAEF 266

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              ++T+ +V+ ++ G V+P             +G  +  C  G +   Y +R+   IN 
Sbjct: 267 AHLQSTVAEVLAMRAGDVLPIELP--EKVFGKVDGVPVMQCGFGTMNGQYALRVERMINH 324

Query: 307 DQ 308
             
Sbjct: 325 QD 326


>gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
 gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
          Length = 357

 Score =  255 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 99/310 (31%), Gaps = 5/310 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
                S      +   T +    +        +   + + L       M  + ++S    
Sbjct: 22  EDDQFSGGEGATIYDFTSQDRIVRGRMPTLELVNERFARHLRISLFNMMRRNAEVSINGV 81

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           Q  KF   +H+       +            I     LV  L++N  G       ++  R
Sbjct: 82  QMVKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRFQAKIEGR 141

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ +  +  +     +  +   +     E                 E V   +
Sbjct: 142 EFTPTERRIIQLLLKTVFEDYKESWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVVSS 199

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ ++     F + +P   +     +  +  Q+  ++           +   + V++ T
Sbjct: 200 FHIELDGGGGDFHITLPYSMIEPIRELLDAGVQSDKQDTDMRWAKALQDEIMDVPVDLST 259

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +  ++ TL+D++ +K G +IP         ++       +  +LGR G N  +RI +RI
Sbjct: 260 MLLEQELTLRDIMEMKAGDIIPVEMP--EHLLVRIEDLPTFRGKLGRKGDNVAVRIEERI 317

Query: 305 NFDQKSLKNF 314
              +      
Sbjct: 318 PRPKSYKNEL 327


>gi|107021592|ref|YP_619919.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU
           1054]
 gi|116688064|ref|YP_833687.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           HI2424]
 gi|170731414|ref|YP_001763361.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           MC0-3]
 gi|206561843|ref|YP_002232608.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           J2315]
 gi|254246641|ref|ZP_04939962.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184]
 gi|105891781|gb|ABF74946.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU
           1054]
 gi|116646153|gb|ABK06794.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           HI2424]
 gi|124871417|gb|EAY63133.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184]
 gi|169814656|gb|ACA89239.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           MC0-3]
 gi|198037885|emb|CAR53829.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           J2315]
          Length = 332

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 89/311 (28%), Gaps = 11/311 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +  Q       P +     R+                +   + + L       M    +I
Sbjct: 26  VDEQRDTSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +  +  K+S    +       +   +             NLV  +++NL G       
Sbjct: 80  SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++  + +  +         + +               +       NE 
Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++       +  + +P   +     +  S  Q ++       +   +++     
Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +    +T + ++ L+ G V+P     +       +G  +  C  G     Y +R
Sbjct: 258 VELTANLAEISSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALR 315

Query: 300 ITDRINFDQKS 310
           +   I      
Sbjct: 316 VQKMIGASDSM 326


>gi|254251031|ref|ZP_04944349.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
 gi|124893640|gb|EAY67520.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
          Length = 332

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 88/311 (28%), Gaps = 11/311 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +  Q       P +     R+                +   + + L       M    +I
Sbjct: 26  VDEQRDASGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +  +  K+S    +       +   +             NLV  +++NL G       
Sbjct: 80  SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++  + +  +         + +               +       NE 
Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++       +  + +P   +     +  S  Q ++       +   +++     
Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +     T + ++ L+ G V+P             +G  +  C  G     Y +R
Sbjct: 258 VELTADLAEIPVTFEKILNLRAGDVLPLEIP--DTITAKVDGVPVMECGYGIFNGQYALR 315

Query: 300 ITDRINFDQKS 310
           +   I+     
Sbjct: 316 VQKMISAGDTM 326


>gi|309779462|ref|ZP_07674223.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA]
 gi|308921703|gb|EFP67339.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA]
          Length = 336

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 97/308 (31%), Gaps = 7/308 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
           +   +         P  +        ++    +      +   + +         M  + 
Sbjct: 19  VSDDADDDPVEAADPSGIRSYNLGSQERIVRGRMPTLEIINERFARNWRIGLFNFMRRNA 78

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS    +  K+S  I +       +   +             NL+  +++NL G     
Sbjct: 79  EISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFGGDGRF 138

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  + VE+++ +R +  +     +                     +       N
Sbjct: 139 HMRVEGRDFTDVEQRIIQRMLHLVFEHYAKAWQPVYPIDFEFLRMEMHT--EFANVATPN 196

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V T + ++ + +      + +P   +        S+ Q ++    +  +   +++   
Sbjct: 197 EVVITTSFSIELGSNGGDVHICMPYTMIEPIRDRLTSAIQGEALEVDKRWLRLLSQQVQT 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +   K  + D++ +K+G VIP       C     +G  +  C  G     Y 
Sbjct: 257 AEVELIADLATAKVQVSDILNMKVGDVIPLEL--DDCVTAKVDGVPVMECNYGTFNGQYA 314

Query: 298 IRITDRIN 305
           +R+   +N
Sbjct: 315 LRVNRMLN 322


>gi|114332022|ref|YP_748244.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91]
 gi|114309036|gb|ABI60279.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91]
          Length = 330

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 90/301 (29%), Gaps = 11/301 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
            G +      P       R+                +   +   L       +   VDIS
Sbjct: 31  NGVTYPGGIRPYDMATQERIVRG------RMPALEIINARFANSLQIGLYNFLRRGVDIS 84

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             S ++ K+S    S       +  S+        I    NL+  +++N+ G       +
Sbjct: 85  AGSIKTIKYSEFTRSLVVPANINMVSMKPLRGTALITIDPNLIFLIVDNMFGGDGRFHTR 144

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+ + +R +  +     +   +        E        +        + V
Sbjct: 145 VEGREFTLTEQGIIRRLLDVLFENYEKAWKSVYPV--RFEYIRAEMNPQFANIATPTDVV 202

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNV 240
              +  + +      F +  P   L     +   S Q        + I    R+     +
Sbjct: 203 VASSFELNLGGNRGEFYICTPYTMLEPIRDLLNNSMQEDHAEVDNNWIKSLTRQVQGAEI 262

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            I   +   + TL  ++ ++ G VI          +  ANG  I  C  G +  +Y +++
Sbjct: 263 EIIANLGHTRVTLHQILNMQEGDVIALDIP--DTVVAMANGVPIMDCHYGILNDHYALKV 320

Query: 301 T 301
            
Sbjct: 321 K 321


>gi|30248480|ref|NP_840550.1| flagellar motor switch protein FliM [Nitrosomonas europaea ATCC
           19718]
 gi|30138366|emb|CAD84375.1| Flagellar motor switch protein FliM [Nitrosomonas europaea ATCC
           19718]
          Length = 330

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
              P +     R+                +   +   L       +   VDIS  S ++ 
Sbjct: 38  GVRPYNMATQERIVRG------RMPALEIINARFANSLQIGLYNFLRRGVDISAGSIKTI 91

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K+S    S       +  S+             NL+  +++N+ G       ++  R  +
Sbjct: 92  KYSEFTRSLVVPANINLVSMKPLRGTALFTIDPNLIFLIVDNMFGGDGRFHTRVEGREFT 151

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+ + +R +  +     +   +        E        +        + V      +
Sbjct: 152 LTEQGIIRRLLDVLFEHYEKAWQSVYPVK--FEYIRAEMNPQFANIVTPTDIVVASAFEL 209

Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            +      F   IP   L     +   S Q       ++ I    R+     + I   + 
Sbjct: 210 NLGGNRGEFYTCIPYTMLEPIRDLLNNSMQEDRAEVDKNWIKSLTRQVQGAEIEIIANLG 269

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             + TL  ++ ++ G VI          +  AN   I  C  G +  +Y +++    + +
Sbjct: 270 QTQVTLHQILNMQEGDVIALDIP--DTVVAIANNVPIMDCHYGILNGHYALKVKTVRSPN 327

Query: 308 Q 308
           +
Sbjct: 328 E 328


>gi|85859177|ref|YP_461379.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
 gi|85722268|gb|ABC77211.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
          Length = 333

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 10/301 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                    + +         +   V ++  S    KF  
Sbjct: 38  YDLASQDRIIRG------RMPTLEMTNEKFARMFRTTLSSMLRKVVAVNSMSVDMIKFGE 91

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
            + +           +     N      + ++ TL++ L G + + + ++  R  + +E 
Sbjct: 92  FLKTLPVPTSLHIFRMEPLRGNAIFVMESKVIFTLVDVLFGGAGKELFKVEGREFTAIET 151

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L K+ I    + L +   T  +    +         +        + V  ++  + +E 
Sbjct: 152 NLIKKVILSALSDLEKAWKTMHDI--RVIYQRSEINPQFAQIVPPTDLVFVVDFEIEVEY 209

Query: 193 VASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
           +     L IP  T+        +  Q++     +  +  F       +++I   +     
Sbjct: 210 ITGILKLCIPYSTVEPIREKLQAGFQSEQLEVDKVWMKRFRDNLMLAHLDILIELGSTLI 269

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           + KDVV LK G VI           +   G   +    G    N  +RI++ +  D++ +
Sbjct: 270 SAKDVVNLKPGDVITLDQYCTDPVNIFVEGMMKFKGYPGTYKGNQAVRISEIV-QDKEVM 328

Query: 312 K 312
            
Sbjct: 329 D 329


>gi|239826624|ref|YP_002949248.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70]
 gi|239806917|gb|ACS23982.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70]
          Length = 334

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 101/289 (34%), Gaps = 7/289 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V IS  S     +   I S  +    +   
Sbjct: 50  SKDQIRSLTRIHENFARLLTTFFAAQLRTYVQISVASADQIPYEEFIRSIPKMTFLNVFE 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +   + +  I  + N+   +L+ ++G    +I ++ N  L+ +E ++      +  + L 
Sbjct: 110 VPPLNGHILIEVNPNIAYAMLDRVMGGRGTSINKVDN--LTEIETRIMSNLFDKAFSNLR 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
               +  E  P   DF      +       N+ V  I++N  +   +    + IP   L 
Sbjct: 168 DAWESIAEIDPIFTDFEV--NPQFLQVISPNDTVVVISLNTKVGETSGMINICIPHVVLE 225

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q + +  S +  +   R+     + I   +     T+++ + L++G V
Sbjct: 226 PIIPKLSVHYWMQAQKKESSPEETEAIERRIRFAKLPIIAELGTATITIQEFLQLEVGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I      +   ++       +  + G+  K   ++I D    ++     
Sbjct: 286 IELDQSIQQPLLIKVGDIPKFIGQPGKRNKRLAVQILDAFKGEEDYNDE 334


>gi|91785619|ref|YP_560825.1| flagellar motor switch protein FliM [Burkholderia xenovorans LB400]
 gi|296157439|ref|ZP_06840274.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1]
 gi|91689573|gb|ABE32773.1| Flagellar motor switch protein FliM [Burkholderia xenovorans LB400]
 gi|295892211|gb|EFG71994.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1]
          Length = 332

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 87/308 (28%), Gaps = 11/308 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           QS      P +     R+                +   + + L       M    +IS  
Sbjct: 29  QSDRAGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K+S    +       +   +             NLV  +++NL G       ++ 
Sbjct: 83  PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++  + +  +         + +               +       NE V  
Sbjct: 143 GRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIVIV 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              ++       +  + +P   +     I  S  Q ++       +   +++     V +
Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     T + ++ ++ G V+P             +G  +  C  G     Y +R+  
Sbjct: 261 TADLAKVPVTFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318

Query: 303 RINFDQKS 310
            I+     
Sbjct: 319 MISAADTM 326


>gi|172059107|ref|YP_001806759.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6]
 gi|171991624|gb|ACB62543.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6]
          Length = 332

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 88/304 (28%), Gaps = 11/304 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
               P +     R+                +   + + L       M    +IS +  + 
Sbjct: 33  SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            K+S    +       +   +             NLV  +++NL G       ++  R  
Sbjct: 87  QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  + +  +         + +               +       NE V     +
Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           +       +  + +P   +     +  S  Q ++       +   +++     V +   +
Sbjct: 205 IEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
               +T + ++ L+ G V+P     +       +G  +  C  G     Y +R+   I+ 
Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322

Query: 307 DQKS 310
               
Sbjct: 323 SDTM 326


>gi|255021379|ref|ZP_05293427.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
           51756]
 gi|254969242|gb|EET26756.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
           51756]
          Length = 337

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 91/302 (30%), Gaps = 11/302 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P       R+                +     +         +    +IS    +  
Sbjct: 35  SVQPYDLANQDRIVRG------RMPTLEVVNERLARLWRVSLFNFLRRSAEISVGPVRLV 88

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K+S  I S       +   +     +        L+  +++N  G       ++  R  +
Sbjct: 89  KYSEFIRSLMVPSNINIVQVKPLRGSALFVFDARLIFAVVDNYFGGDGRFHARIEGREFT 148

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E+++ KR +  +        S   +  P L         +  +     E V     N+
Sbjct: 149 PLEQRIIKRLLDLVFKDFKSAWSPVIDLQPELSRSEV--NPQFVSIATPTEVVIVSTFNI 206

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQN-KSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            +E+   SF + +P   +        +          +  +     +  +  + +     
Sbjct: 207 ELESGTGSFQICLPYGMVEPVRDQLTAGTTADRSEIDKRWVQSLHDELREATLELRVEFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +++ ++ L++G VIP         +   +G  ++    G  G  Y I+  + +  +
Sbjct: 267 RLPISVRQLLALRVGDVIPLERP--ETLVARVDGIPVFRGPYGVHGGKYAIQFHEALPPE 324

Query: 308 QK 309
            +
Sbjct: 325 TE 326


>gi|115350088|ref|YP_771927.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD]
 gi|115280076|gb|ABI85593.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD]
          Length = 332

 Score =  254 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 89/304 (29%), Gaps = 11/304 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            +  P +     R+                +   + + L       M    +IS +  + 
Sbjct: 33  SSVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            K+S    +       +   +             NLV  +++NL G       ++  R  
Sbjct: 87  QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  + +  +         + +               +       NE V     +
Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           +       +  + +P   +     +  S  Q ++       +   +++     V +   +
Sbjct: 205 IEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
               +T + ++ L+ G V+P     +       +G  +  C  G     Y +R+   I+ 
Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322

Query: 307 DQKS 310
               
Sbjct: 323 SDTM 326


>gi|78064701|ref|YP_367470.1| flagellar motor switch protein FliM [Burkholderia sp. 383]
 gi|77965446|gb|ABB06826.1| Flagellar motor switch protein FliM [Burkholderia sp. 383]
          Length = 332

 Score =  254 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 89/311 (28%), Gaps = 11/311 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +  Q       P +     R+                +   + + L       M    +I
Sbjct: 26  VDEQRDTSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +  +  K+S    +       +   +             NLV  +++NL G       
Sbjct: 80  SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++  + +  +         + +               +       NE 
Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++       +  + +P   +     +  S  Q ++       +   +++     
Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +    +  + ++ L+ G V+P     +       +G  +  C  G     Y +R
Sbjct: 258 VELTANLAEISSNFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALR 315

Query: 300 ITDRINFDQKS 310
           +   I+     
Sbjct: 316 VQKMISAGDSM 326


>gi|319649555|ref|ZP_08003711.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2]
 gi|317398717|gb|EFV79399.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2]
          Length = 332

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 109/312 (34%), Gaps = 13/312 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   + + L   F  ++   V I
Sbjct: 28  LKKEQTEKKVKVYDFKRALRF------SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQI 81

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S  S     +   I S  +  + +   +        +  + N+   +++ L+G    +I 
Sbjct: 82  SVASADQIPYEEFIRSIPKMTILNVIEVPPLDGRILMEVNPNVAYAMMDRLMGGRGTSIN 141

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++ N  L+ +E K+   T  +    L +  ST  +  P L DF      +       NE 
Sbjct: 142 KVDN--LTEIETKIMSATFERAFENLREAWSTIADIDPLLADFEV--NPQFLQMVSPNET 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  I++N TI   +    + IP   L             Q   + +  ++I    R  ++
Sbjct: 198 VVVISLNTTIGETSGMINICIPHVVLEPIIPKLSVHYWMQTDKKEREPEVIARLERNIHK 257

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +      ++D ++L IG VI          I+       +  + G++ K   
Sbjct: 258 AEVPVICELGSSDIAIQDFLSLDIGDVIELNQGIDQALIIKVGNIPKFIGQPGKMNKKMA 317

Query: 298 IRITDRINFDQK 309
           ++I D +    +
Sbjct: 318 VQILDTVKGGDE 329


>gi|170698080|ref|ZP_02889161.1| flagellar motor switch protein FliM [Burkholderia ambifaria
           IOP40-10]
 gi|170137041|gb|EDT05288.1| flagellar motor switch protein FliM [Burkholderia ambifaria
           IOP40-10]
          Length = 332

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 88/304 (28%), Gaps = 11/304 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
               P +     R+                +   + + L       M    +IS +  + 
Sbjct: 33  SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            K+S    +       +   +             NLV  +++NL G       ++  R  
Sbjct: 87  QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  + +  +         + +               +       NE V     +
Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           +       +  + +P   +     +  S  Q ++       +   +++     V +   +
Sbjct: 205 IEFGPTGGTLHICMPYSMVEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
               +T + ++ L+ G V+P     +       +G  +  C  G     Y +R+   I+ 
Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322

Query: 307 DQKS 310
               
Sbjct: 323 SDTM 326


>gi|171316890|ref|ZP_02906099.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5]
 gi|171097971|gb|EDT42789.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5]
          Length = 332

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 88/304 (28%), Gaps = 11/304 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
               P +     R+                +   + + L       M    +IS +  + 
Sbjct: 33  SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            K+S    +       +   +             NLV  +++NL G       ++  R  
Sbjct: 87  QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  + +  +         + +               +       NE V     +
Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           +       +  + +P   +     +  S  Q ++       +   +++     V +   +
Sbjct: 205 IEFGPTGGTLHICMPYSMVEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
               +T + ++ L+ G V+P     +       +G  +  C  G     Y +R+   I+ 
Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322

Query: 307 DQKS 310
               
Sbjct: 323 SDTM 326


>gi|167585018|ref|ZP_02377406.1| flagellar motor switch protein FliM [Burkholderia ubonensis Bu]
          Length = 332

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 88/303 (29%), Gaps = 11/303 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
              P +     R+                +   + + L       M    +IS +  +  
Sbjct: 34  GIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKVQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K+S    +       +   +             NLV  +++NL G       ++  R  +
Sbjct: 88  KYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  + +  +         + +               +       NE V     ++
Sbjct: 148 ATEQRIIGKMLNLVFEHYTTAWKSVRPLQFEYVRSEMHT--QFANVATPNEIVIVTQFSI 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
                  +  + +P   +     +  S  Q ++       +   +++     V +   + 
Sbjct: 206 EFGPTGGTLHICMPYSMVEPIRDVLASPIQGEALEVDRRWVRVLSQQVQTAEVEVTANLA 265

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               T + ++ L+ G V+P     +       +G  +  C  G     Y +R+   I+ +
Sbjct: 266 EIPVTFEQILNLRAGDVLPLA--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISAN 323

Query: 308 QKS 310
              
Sbjct: 324 DTM 326


>gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 337

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 16/302 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   +     E                 E+
Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++ +E       + +P   L     +  +  Q+   ++ +        +     
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +  K+ TL+ +  LK+G V+P     +    L      +++ E G    N  ++
Sbjct: 258 VTLSSVLASKRMTLRQLTGLKVGDVLPIELPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315

Query: 300 IT 301
           IT
Sbjct: 316 IT 317


>gi|325928696|ref|ZP_08189868.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118]
 gi|325540928|gb|EGD12498.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118]
          Length = 337

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   +     E                 E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++ +E       + +P   L     +  +  Q+   ++ +        +     
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +  K+ +L+ +  LK+G ++P     +    L      +++ E G    N  ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315

Query: 300 IT 301
           IT
Sbjct: 316 IT 317


>gi|289208344|ref|YP_003460410.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix]
 gi|288943975|gb|ADC71674.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix]
          Length = 324

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 32/299 (10%), Positives = 86/299 (28%), Gaps = 11/299 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                  +     R+                +   + + L       +    ++S    +
Sbjct: 33  DGEAREFNFATQDRIVRG------RMPTLEMINERFARHLRVRLFNMLRRSAELSVVGTR 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KFS  +HS       +                  LV  L++N  G       ++  R 
Sbjct: 87  VSKFSEYMHSLFVPTSLNLVRAHPLHGTGLFVFDPKLVFILVDNFFGGDGRYHTRIEGRD 146

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E ++    +      + +      +     E        +        E V     
Sbjct: 147 FTPMEMRVVHGILEGAFEDMVKAWQPVMDL--RFEFLNSEVNPQFANIVSPTEIVVISEF 204

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ ++    +    +P   +        +  Q+   +  +  +     +     V + + 
Sbjct: 205 HIELDGGGGNLHFTLPYSMIEPIREQLDTGLQSDRSDVDQRWMKALEEEIQDAEVEVSST 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           +   + T+++++ ++ G +IP          L      ++  + G       I++TDRI
Sbjct: 265 LTETEVTVQELLDIQPGDIIPINLP--ETVTLKVEDIPLFRGKFGVSDGKNAIQVTDRI 321


>gi|21242691|ref|NP_642273.1| flagellar motor switch protein FliM [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294664066|ref|ZP_06729468.1| flagellar motor switch protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21108164|gb|AAM36809.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292606169|gb|EFF49418.1| flagellar motor switch protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 337

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   +     E                 E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++ +E       + +P   L     +  +  Q+   ++ +        +     
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +  K+ +L+ +  LK+G ++P     +    L      +++ E G    N  ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315

Query: 300 IT 301
           IT
Sbjct: 316 IT 317


>gi|209695733|ref|YP_002263663.1| flagellar motor switch protein FliM [Aliivibrio salmonicida
           LFI1238]
 gi|208009686|emb|CAQ79985.1| polar flagellar switch protein FliM (flagellar motor switch protein
           FliM) [Aliivibrio salmonicida LFI1238]
          Length = 343

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 32/297 (10%), Positives = 87/297 (29%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       +    ++S       KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVSMVKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            +     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  +     +  S         E                 E +   + ++ ++ 
Sbjct: 151 RIIQLLLKVVFEDYKEAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F ++ P   +     +  +  Q+   +           +   + V +   +   + 
Sbjct: 209 GGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESEI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +L+D++ L+ G +IP        A +       Y  ++G+ G    ++IT++I    
Sbjct: 269 SLRDLMDLQAGDIIPIEMP--EAATVFVEDLPTYRGKVGKSGDKLAVQITEKIKRPD 323


>gi|212639555|ref|YP_002316075.1| flagellar motor switch protein FliM [Anoxybacillus flavithermus
           WK1]
 gi|212561035|gb|ACJ34090.1| Flagellar motor switch protein FliM [Anoxybacillus flavithermus
           WK1]
          Length = 335

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 104/284 (36%), Gaps = 7/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V IS  S     +   I S  +  + +   
Sbjct: 52  SKDQIRSLTRMHENFARLLTTFFSAQLRTYVQISVASADQLPYEEFIRSIPKMTILTVFE 111

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +  + N+   +L+ +LG    ++ ++ N  L+ +E K+      +  + L 
Sbjct: 112 VPPLDGRVLLEVNPNIAYAMLDRVLGGRGVSLNKIEN--LTEIETKIMSNLFEKAFSNLR 169

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +   +  +  P L DF      +       NE V  I++N  I + +    + IP   L 
Sbjct: 170 EAWESVADIDPMLTDFEV--NPQFLQMVSPNETVVVISLNTQIGDTSGMINICIPHVVLE 227

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q + + +  + +    ++  Q  V +   +     ++++ + L +G V
Sbjct: 228 PIIPKLSVHYWMQTQKKAREPEEVATLQKRLKQTKVPMIAELGTSTISIQEFLQLSVGDV 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           I      +   ++       +  + G++ K   I+I D I  + 
Sbjct: 288 IQLDQTVRDPLVIKVGDVPKFIGQPGKMNKRLAIQILDVIKGED 331


>gi|209522293|ref|ZP_03270920.1| flagellar motor switch protein FliM [Burkholderia sp. H160]
 gi|209497269|gb|EDZ97497.1| flagellar motor switch protein FliM [Burkholderia sp. H160]
          Length = 332

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 88/310 (28%), Gaps = 11/310 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
             QS      P +     R+                +   + + L       M    +IS
Sbjct: 27  SEQSDRSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEIS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               +  K+S    +       +   +             NLV  +++NL G       +
Sbjct: 81  VGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTR 140

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++  + +            + +               +       NE V
Sbjct: 141 VEGRDFTQTEQRIIMKLLNLTFEHYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIV 198

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
                ++   +   +  + +P   +     I  S  Q ++ +     +   +++     V
Sbjct: 199 IVTQFSIEFGSTGGTLHICMPYSMIEPIRDILSSPIQGEAMDVDRRWVRVLSQQVQAAEV 258

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     T + ++ ++ G V+P             +G  +  C  G     Y +R+
Sbjct: 259 QLTADLAQVPVTFEQILNMRKGDVLPINIP--ERITAKVDGVPVMECGYGIFNGQYALRV 316

Query: 301 TDRINFDQKS 310
              I+     
Sbjct: 317 QKMISAADTM 326


>gi|53717666|ref|YP_106652.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           K96243]
 gi|76811753|ref|YP_331656.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1710b]
 gi|126441392|ref|YP_001057084.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668]
 gi|126453439|ref|YP_001064314.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1106a]
 gi|134281495|ref|ZP_01768203.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305]
 gi|167717395|ref|ZP_02400631.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           DM98]
 gi|167736438|ref|ZP_02409212.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 14]
 gi|167813512|ref|ZP_02445192.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 91]
 gi|167822054|ref|ZP_02453525.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 9]
 gi|167843667|ref|ZP_02469175.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           B7210]
 gi|167892138|ref|ZP_02479540.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           7894]
 gi|167900650|ref|ZP_02487855.1| flagellar motor switch protein FliM [Burkholderia pseudomallei NCTC
           13177]
 gi|167908870|ref|ZP_02495961.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 112]
 gi|167916909|ref|ZP_02504000.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           BCC215]
 gi|217424100|ref|ZP_03455600.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576]
 gi|226193119|ref|ZP_03788729.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814422|ref|YP_002898873.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           MSHR346]
 gi|242315986|ref|ZP_04815002.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1106b]
 gi|254184092|ref|ZP_04890683.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1655]
 gi|254186558|ref|ZP_04893075.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194648|ref|ZP_04901079.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13]
 gi|254258129|ref|ZP_04949183.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1710a]
 gi|254298640|ref|ZP_04966091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           406e]
 gi|52208080|emb|CAH34010.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           K96243]
 gi|76581206|gb|ABA50681.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1710b]
 gi|126220885|gb|ABN84391.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668]
 gi|126227081|gb|ABN90621.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1106a]
 gi|134247162|gb|EBA47248.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305]
 gi|157808681|gb|EDO85851.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           406e]
 gi|157934243|gb|EDO89913.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169651398|gb|EDS84091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13]
 gi|184214624|gb|EDU11667.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1655]
 gi|217393163|gb|EEC33185.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576]
 gi|225934719|gb|EEH30696.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504112|gb|ACQ96430.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           MSHR346]
 gi|242139225|gb|EES25627.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1106b]
 gi|254216818|gb|EET06202.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1710a]
          Length = 332

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 88/307 (28%), Gaps = 11/307 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +      P +     R+                +   + + L       M    +IS + 
Sbjct: 30  AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S    +       +   +             NLV  +++NL G       ++  
Sbjct: 84  VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  + +  +         + +               +       NE V   
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
             ++       +  + +P   +     +  S  Q ++       +   +++     V + 
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +    TT + ++ L+ G V+P             +G  +  C  G     Y +R+   
Sbjct: 262 ADLAEVPTTFEKILNLRTGDVLPLDIT--DSITAKVDGVPVMECGYGIFNGQYALRVQRM 319

Query: 304 INFDQKS 310
           I+     
Sbjct: 320 ISASDTM 326


>gi|315127312|ref|YP_004069315.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913]
 gi|315015826|gb|ADT69164.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913]
          Length = 363

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 97/314 (30%), Gaps = 11/314 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
            G+    +T         R+                +   + + +       M    ++S
Sbjct: 27  DGEDGEGSTLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               Q  KF   IH+       +            I     LV  L++N  G       +
Sbjct: 81  INGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAK 140

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ +  +  I     +  +   +   + E                 E V
Sbjct: 141 IEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVV 198

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
              + ++ ++     F + +P   L     +  +  Q+ +E+           +   + V
Sbjct: 199 VISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEV 258

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           ++ T++     +LK ++ LK G +IP          +       +  ++GR   N  ++I
Sbjct: 259 DLSTQLLEVDLSLKQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDNVALQI 316

Query: 301 TDRINFDQKSLKNF 314
           +++I          
Sbjct: 317 SEKIKRPDSVKSEL 330


>gi|78047547|ref|YP_363722.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035977|emb|CAJ23668.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 337

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   +     E                 E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++ +E       + +P   L     +  +  Q+   ++ +        +     
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +  K+ +L+ +  LK+G ++P     +    L      +++ E G    N  ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315

Query: 300 IT 301
           IT
Sbjct: 316 IT 317


>gi|307731349|ref|YP_003908573.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003]
 gi|307585884|gb|ADN59282.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003]
          Length = 332

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 87/308 (28%), Gaps = 11/308 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           QS      P +     R+                +   + + L       M    +IS  
Sbjct: 29  QSERVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K+S    +       +   +             NLV  +++NL G       ++ 
Sbjct: 83  PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++  + +  +         + +               +       NE V  
Sbjct: 143 GREFTQTEQRIISKLLNLVFEHYAASWKSVRPLQFEYMRSEMHT--QFANVATPNEIVIV 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              ++       +  + +P   +     I  S  Q ++       +   +++     V +
Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQSAEVEL 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     T + ++ ++ G V+P             +G  +  C  G     Y +R+  
Sbjct: 261 TADLAQVPITFEQILNMRKGDVLPINIP--EQITAKVDGVPVMECGYGIFNGQYALRVQR 318

Query: 303 RINFDQKS 310
            I+     
Sbjct: 319 MISAADTM 326


>gi|56460301|ref|YP_155582.1| flagellar motor switch protein FliM [Idiomarina loihiensis L2TR]
 gi|56179311|gb|AAV82033.1| Flagellar motor switch protein [Idiomarina loihiensis L2TR]
          Length = 356

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 96/306 (31%), Gaps = 11/306 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +S   +          R+                +   + + +       M    ++S  
Sbjct: 30  ESASADALDYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRTAEVSIN 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             Q  KF   +H+       +            I     LV  L++N  G       ++ 
Sbjct: 84  GVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVDNFFGGDGRYHAKIE 143

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++ +  +  +     +  +   +     E                 E +  
Sbjct: 144 GREFTPTERRIIQMLLKLVFEDYKEAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIVI 201

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
            + ++ ++     F + +P   L     +  +  Q+  E+           +   + V +
Sbjct: 202 SSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTDMRWSKALRDEIMDVPVEM 261

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             ++   + +L++V+ L+ G VIP    +     +       +  ++GR   N  ++I++
Sbjct: 262 IAKLAQTEMSLREVMDLREGDVIPLELPDD--LTVLIEDLPTFHAKMGRSRDNVALKISE 319

Query: 303 RINFDQ 308
           +I   +
Sbjct: 320 KIKRPE 325


>gi|187925747|ref|YP_001897389.1| flagellar motor switch protein FliM [Burkholderia phytofirmans
           PsJN]
 gi|187716941|gb|ACD18165.1| flagellar motor switch protein FliM [Burkholderia phytofirmans
           PsJN]
          Length = 332

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 88/308 (28%), Gaps = 11/308 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           QS      P +     R+                +   + + L       M    +IS  
Sbjct: 29  QSDRVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K+S    +       +   +             NLV  +++NL G       ++ 
Sbjct: 83  PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++  + +  +         + +               +       NE V  
Sbjct: 143 GRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIVIV 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              ++       +  + +P   +     I  S  Q ++       +   +++     V +
Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     T + ++ ++ G V+P             +G  +  C  G     Y +R+  
Sbjct: 261 TADLAQVPVTFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318

Query: 303 RINFDQKS 310
            I+  +  
Sbjct: 319 MISAAETM 326


>gi|289666107|ref|ZP_06487688.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 337

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 16/302 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   +     E                 E+
Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++ +E       + +P   L     +  +  Q+   ++ +        +     
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +  K+ TL+ +  LK+G V+P     +    L      +++ E G    N  ++
Sbjct: 258 VTLSSVLASKRMTLRQLTGLKVGDVLPIELPAQVP--LCVEDIPLFTGEFGISNGNNAVK 315

Query: 300 IT 301
           IT
Sbjct: 316 IT 317


>gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 363

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 96/313 (30%), Gaps = 11/313 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G+    NT         R+                +   + + +       M    ++S 
Sbjct: 28  GEDGEGNTLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVSI 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              Q  KF   +H+       +            I     LV  L++N  G       ++
Sbjct: 82  NGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKI 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++ +  +  I     +  +   +   + E                 E V 
Sbjct: 142 EGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVV 199

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
             + ++ ++     F + +P   L     +  +  Q+ +E+           +   + V 
Sbjct: 200 ISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEVE 259

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           + T++     TLK ++ LK G +IP          +       +  ++GR   +  ++I+
Sbjct: 260 LSTQLLEVDLTLKQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDSVALQIS 317

Query: 302 DRINFDQKSLKNF 314
           ++I          
Sbjct: 318 EKIKRPDSVKSEL 330


>gi|88858101|ref|ZP_01132743.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
 gi|88819718|gb|EAR29531.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
          Length = 364

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 94/300 (31%), Gaps = 11/300 (3%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
            S        R+                +   + + +       M    ++S    Q  K
Sbjct: 36  ASQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVSINGVQMIK 89

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           F   IH+       +            I     LV  L++N  G       ++  R  + 
Sbjct: 90  FGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGREFTP 149

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E+++ +  +  I     +  +   +   + E                 E V   + ++ 
Sbjct: 150 TERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSFHIE 207

Query: 190 IENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
           ++     F + +P   L     +  +  Q+ +E+           +   + V + TR+  
Sbjct: 208 LDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEVGLSTRMLE 267

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            K +L+ ++ L+ G VIP          +       +  ++GR   N  ++I+++I    
Sbjct: 268 VKLSLEQIMNLQAGDVIPVEMP--EHITVFIEDLPTFRAKMGRSRDNVALQISEKIKRPD 325


>gi|89098632|ref|ZP_01171514.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911]
 gi|89086594|gb|EAR65713.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911]
          Length = 332

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 101/311 (32%), Gaps = 13/311 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   + + L   F  ++   V I
Sbjct: 28  LKKEQSEKKVKVYDFKRALRF------SKDQVRSLTRIHENFARLLTTFFSAQLRTYVQI 81

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S  S     +   I S  +  + +   +        +  + N+   +++ ++G    +I 
Sbjct: 82  SVASADQIPYEEFIRSIPKMTILNVFEVPPLDGRILMEVNPNIAYAMMDRMMGGRGSSIN 141

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++    L+ +E K+   T  +    L +  ST  E  P L         +       NE 
Sbjct: 142 KVDT--LTEIETKIMSNTFERAFEHLREAWSTITEIDPFL--AEFEINPQFLQMVSPNET 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  I++N  I   +    + IP   L             Q + + +  + +        +
Sbjct: 198 VVVISLNTMIGETSGMINICIPHVVLEPIIPKLSVHYWMQTEKKEREPEELGRLEDSIQK 257

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     +++D + L +G VI           +       ++ + G+  K   
Sbjct: 258 AQVPVSAELGSADISIQDFLMLDLGDVIELNQAIDRPLTIKIGDIPKFTGQPGKANKKLA 317

Query: 298 IRITDRINFDQ 308
           I+I D +    
Sbjct: 318 IQILDTLKGGD 328


>gi|296133037|ref|YP_003640284.1| flagellar motor switch protein FliM [Thermincola sp. JR]
 gi|296031615|gb|ADG82383.1| flagellar motor switch protein FliM [Thermincola potens JR]
          Length = 333

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 98/285 (34%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K       ++   + + L       +   V ++  S +   +   I S     + +   
Sbjct: 50  SKEQIHTLQAIHENFARLLATFLSAHLRTVVTMNVHSVEQITYDEFIRSLPNPTLLNIFM 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +   + N  +  + N+  T+L+ L G   +   ++  R L+ +E+ + ++ I +   +L 
Sbjct: 110 MEPLAGNAILEVNPNVTFTILDRLFGGPGQAPEKM--RGLTDIERTVIEKVIIRCLQILK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +         P LE                 E V  I+++ TI +      L IP   L 
Sbjct: 168 EAWENIIVFDPKLEIIET--NPMFTQIVSPTEMVVLISIHATIGDNEGIMNLCIPFIVLE 225

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                          ++  + + I    R+  +  + +   +      L +++ L+ G V
Sbjct: 226 PIISKLTAHFWFAGTAKTVTAEHIQNTQRRLEKAKITLSAVLGETTIKLGELLELQPGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I   +R      +    ++ +    G VG    ++IT  +    +
Sbjct: 286 IQLDNRTTDELKILVGDRKKFYGRPGTVGSRLAVQITRLVKEGDE 330


>gi|319787093|ref|YP_004146568.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465605|gb|ADV27337.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis
           11-1]
          Length = 339

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 86/301 (28%), Gaps = 11/301 (3%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
             P       R+                +   + +         +    DIS       K
Sbjct: 36  ARPYDFASQDRIIRG------RMPTLEMVNERFARLWRIGLFNLIRRSADISVRGIDMIK 89

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           F   +HS       +            +     LV  +++N  G       ++  R  + 
Sbjct: 90  FGEYMHSLYVPTNLNLVRFKPLRGMGLVVFEPKLVFAVVDNFFGGDGRYPTRIEGREFTV 149

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E ++ +  + Q  A L +  +   +     E                 E+V     ++ 
Sbjct: 150 TEMRVIQLMLRQTFADLVEAWAPVMDVE--FEYINSEINPHFANIVTPREYVVVSRFHVE 207

Query: 190 IENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
           ++       + +P   L     +  +  Q+   ++ E        +     V + + +  
Sbjct: 208 LDGGGGEIHVTLPYSMLEPIRELLDAGIQSDRIDRDESWNTTLREQLQLAEVTVSSVLAQ 267

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           K+  L+ +  LK+G ++P          +      +++ + G       ++IT       
Sbjct: 268 KRIDLRQLTRLKVGDILPIDLST--TVPVCVENIPVFTGQFGVSNGCNAVKITRTHPPGS 325

Query: 309 K 309
           +
Sbjct: 326 E 326


>gi|73539704|ref|YP_300071.1| flagellar motor switch protein FliM [Ralstonia eutropha JMP134]
 gi|72123041|gb|AAZ65227.1| Flagellar motor switch protein FliM [Ralstonia eutropha JMP134]
          Length = 337

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 10/302 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P +     R+                +   + + L       +    DI+  S +
Sbjct: 36  EGGVRPYNLATQERVIRG------RLHTLEIINERFARSLRTALFNFIRRGADITVGSVR 89

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF     +       +   +             NLV  +++NL G       ++  R 
Sbjct: 90  IEKFGDFARNLPMPTNLNLVHMKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEGRD 149

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +            T                 K       NE V T   
Sbjct: 150 FTQTEQRIIQRMLEMTLTSYGNAWRTVYPIETEYVRSEMHT--KFANVATVNEAVITTAF 207

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           ++ +  V     + +P   +     + ++     +   +  +   + +    +V +    
Sbjct: 208 HIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDEKEVDKSWLAKLSTQLRAADVEVVAEF 267

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              ++T+ +V+ L+ G V+P             NG  +  C  G +   Y +R+   IN 
Sbjct: 268 THVQSTVAEVLALRAGDVLPIELP--EHVFGKVNGVPVMQCGFGTINGQYALRVERMINH 325

Query: 307 DQ 308
             
Sbjct: 326 QD 327


>gi|116694517|ref|YP_728728.1| flagellar motor switch protein [Ralstonia eutropha H16]
 gi|113529016|emb|CAJ95363.1| flagellar motor switch protein [Ralstonia eutropha H16]
          Length = 339

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 10/302 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P +     R+                +   + + +       +    DI+  S +
Sbjct: 35  EGGVRPYNLATQERIIRG------RLHTLEIINERFARSMRTALFNFIRRGADITVGSIR 88

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF     +       +   L             NLV  +++NL G       ++  R 
Sbjct: 89  IEKFGDFARNLPMPTNLNLVHLKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEGRD 148

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +    A       T        E      + K       NE V T   
Sbjct: 149 FTQTEQRIIQRMLELTLASYGNAWRTVHPIE--TEYIRSEMHPKFANVATHNEAVVTTAF 206

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           ++ +  V     + +P   +     + ++     +   +  +   + +     V +    
Sbjct: 207 HIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDEKEVDKGWVTQLSTQLRAAEVELVAEF 266

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              ++T+ +V+ ++ G V+P             +G  +  C  G +   Y +R+   IN 
Sbjct: 267 AHLQSTVAEVLAMRAGDVLPIELP--EKVFGKVDGVPVMQCGFGTMNGQYALRVERMINH 324

Query: 307 DQ 308
             
Sbjct: 325 QD 326


>gi|53723902|ref|YP_104282.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
           23344]
 gi|67641904|ref|ZP_00440669.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse
           4]
 gi|121600665|ref|YP_994775.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1]
 gi|124385588|ref|YP_001027842.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
           10229]
 gi|126451066|ref|YP_001082210.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
           10247]
 gi|167000456|ref|ZP_02266270.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20]
 gi|254174753|ref|ZP_04881414.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
           10399]
 gi|254201359|ref|ZP_04907723.1| flagellar motor switch protein FliM [Burkholderia mallei FMH]
 gi|254206701|ref|ZP_04913052.1| flagellar motor switch protein FliM [Burkholderia mallei JHU]
 gi|254357364|ref|ZP_04973638.1| flagellar motor switch protein FliM [Burkholderia mallei
           2002721280]
 gi|52427325|gb|AAU47918.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
           23344]
 gi|121229475|gb|ABM51993.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1]
 gi|124293608|gb|ABN02877.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
           10229]
 gi|126243936|gb|ABO07029.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
           10247]
 gi|147747253|gb|EDK54329.1| flagellar motor switch protein FliM [Burkholderia mallei FMH]
 gi|147752243|gb|EDK59309.1| flagellar motor switch protein FliM [Burkholderia mallei JHU]
 gi|148026428|gb|EDK84513.1| flagellar motor switch protein FliM [Burkholderia mallei
           2002721280]
 gi|160695798|gb|EDP85768.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
           10399]
 gi|238522917|gb|EEP86359.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse
           4]
 gi|243063644|gb|EES45830.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20]
          Length = 332

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 88/307 (28%), Gaps = 11/307 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +      P +     R+                +   + + L       M    +IS + 
Sbjct: 30  AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S    +       +   +             NLV  +++NL G       ++  
Sbjct: 84  VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  + +  +         + +               +       NE V   
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIAT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
             ++       +  + +P   +     +  S  Q ++       +   +++     V + 
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +    TT + ++ L+ G V+P             +G  +  C  G     Y +R+   
Sbjct: 262 ADLAEVPTTFEKILNLRTGDVLPLDIT--DSITAKVDGVPVMECGYGIFNGQYALRVQRM 319

Query: 304 INFDQKS 310
           I+     
Sbjct: 320 ISASDTM 326


>gi|325917742|ref|ZP_08179929.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536041|gb|EGD07850.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC
           35937]
          Length = 337

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   E     E                 E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMEVD--FEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++ +E       + +P   L     +  +  Q+   ++ +        +     
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLNTAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +  K+ +L+ +  LK+G ++P     +    L      +++ E G    N  ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPMFTGEFGVSNGNNAVK 315

Query: 300 IT 301
           IT
Sbjct: 316 IT 317


>gi|34498585|ref|NP_902800.1| flagellar motor switch protein FliM [Chromobacterium violaceum ATCC
           12472]
 gi|34104439|gb|AAQ60797.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
          Length = 334

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           +           R+                +   + + L       +  + +IS    + 
Sbjct: 32  QGVRGYDIGRQERIVRG------RMPTLEIINERFARNLRIGLFNFLRRNAEISVGPVRV 85

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            K+S  I +       +   +        +    +LV  +++NL G+      ++  R  
Sbjct: 86  QKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIFDPDLVFLIVDNLFGSDGRYHVRVEGRDF 145

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  R +  +     +                     +        E V  +  +
Sbjct: 146 TPTEQRIIHRLLEVVFTECQKAWEPVYPIE--FVYLRSEMNTQFANIATPTEVVVAMTFH 203

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + +      F + +P   +     +  S  Q          ++    +     V +   +
Sbjct: 204 IELGAGGGDFHICLPYSMVEPIRDLLSSTMQADRTEVDNRWVNLMTHQVQAAEVELVASL 263

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              K TL  ++ LK G V+              +G  ++    G V   Y +++   +  
Sbjct: 264 AHAKVTLGQILNLKNGDVVMIEIP--ERVEADVSGIPVFEASYGTVQGRYALKVEKILAG 321

Query: 307 DQKSLKN 313
             + L++
Sbjct: 322 TNEFLES 328


>gi|160896094|ref|YP_001561676.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1]
 gi|160361678|gb|ABX33291.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1]
          Length = 334

 Score =  252 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 102/311 (32%), Gaps = 7/311 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
           + G+S    T  +   ++ +      ++    +      +   + +         +    
Sbjct: 18  VTGESQKSTTEEVEAGIIRQYDISSQERIVRGRMPTMEIVNERFARNFRIGLFNFIRRSP 77

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S  +    ++S  +        F+  ++     +  + C  +LV  +++ L G +   
Sbjct: 78  EVSVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCDPSLVFGVIDTLYGGTGRL 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  S  E+++  R +  I     +           L         +       +
Sbjct: 138 QTRIEGRDFSHTEQRVINRLVNVICEEYKKAWHGIYPLE--LGYQRSEMQPQFANIATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQ 237
           E V +    + I +++ S  + +P  TL     +   S+Q  S       +    R+   
Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVKVLKREIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ ++ G  I            S  G  I+ C+ G     Y 
Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPIFECQYGTHNDKYA 313

Query: 298 IRITDRINFDQ 308
           IR+ + +    
Sbjct: 314 IRVENCLRGAD 324


>gi|170694407|ref|ZP_02885561.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M]
 gi|170140830|gb|EDT09004.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M]
          Length = 332

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 86/308 (27%), Gaps = 11/308 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           QS      P +     R+                +   + + L       M    +IS  
Sbjct: 29  QSERVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K+S    +       +   +             NLV  +++NL G       ++ 
Sbjct: 83  PVKVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++  + +            + +               +       NE V  
Sbjct: 143 GRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEYMRSEMHT--QFANVATPNEIVIV 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              ++       +  + +P   +     I  S  Q ++       +   +++     V +
Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     T + ++ ++ G V+P             +G  +  C  G     Y +R+  
Sbjct: 261 TADLAQVPITFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318

Query: 303 RINFDQKS 310
            I+     
Sbjct: 319 MISAADTM 326


>gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 337

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 16/302 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEASQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   +    LE                 E+
Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--LEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++ +E       + +P   L     +  +  Q+   ++ +        +     
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +  K+ +L+ +  LK+G ++P     +    L      +++ E G    N  ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315

Query: 300 IT 301
           IT
Sbjct: 316 IT 317


>gi|300113610|ref|YP_003760185.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113]
 gi|299539547|gb|ADJ27864.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113]
          Length = 336

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 93/309 (30%), Gaps = 11/309 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            K   P       R+       +    +   +   + +         +    +++    Q
Sbjct: 34  EKTIRPYDFSSEDRI------ARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQ 87

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KFS  +H+       +   +              LV  L++   G S E   +L NR 
Sbjct: 88  VLKFSEYLHTLFMPTSLNLVQIHPLRGAGLFVFDPKLVFMLVDRYFGGSGEFYNRLENRE 147

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E  + +  + +    L Q        +   E        +  T    +E V     
Sbjct: 148 FTPTEMHIIQLVLERTFTDLKQAWEPVLAIN--FEYLQTEFNPRLATIASPSEIVVVSTF 205

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245
           ++  E     F + +P   L     +  + +                +      V +   
Sbjct: 206 HVEFEGGGGEFHIALPYTLLEPVRELLDTGKKDDFTQADGGWNQALRKNVSDAEVELSCT 265

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+V+ LK G ++P      +     A+G  ++    G    +  +++ +R+ 
Sbjct: 266 LTEIRLSLKEVLALKSGDILPIELP--STVTALADGVPVFRVRYGIHNSSRALKVVERLL 323

Query: 306 FDQKSLKNF 314
             +   +  
Sbjct: 324 SPESFTEKL 332


>gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 356

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 94/307 (30%), Gaps = 11/307 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +     +        R+                +   + + +       M    ++S 
Sbjct: 26  GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              Q  KF   +H+       +            I     LV  L+EN  G       ++
Sbjct: 80  NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++ +  +  +        +   +     E                 E + 
Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
             + ++ ++     F + +P   L     +  +  Q+   +           +   + V 
Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +  ++     TL++++ LK G +IP    E    ++       +  ++GR   N  ++IT
Sbjct: 258 LRAKLLETDLTLRELMELKPGDIIPVEMPEN--LLVYVEDLPTFHAKMGRTKDNVALKIT 315

Query: 302 DRINFDQ 308
           D++   +
Sbjct: 316 DKLKRPE 322


>gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 363

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 95/307 (30%), Gaps = 11/307 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +T         R+                +   + + +       M    ++S    Q  
Sbjct: 34  STLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVSINGVQMI 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   IH+       +            I     LV  L++N  G       ++  R  +
Sbjct: 88  KFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  +  I     +  +   +   + E                 E V   + ++
Sbjct: 148 PTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSFHI 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++     F + +P   L     +  +  Q+ +E+           +   + V++ T++ 
Sbjct: 206 ELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEVDMSTQLL 265

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               TLK ++ LK G +IP          +       +  ++GR   N  ++I+++I   
Sbjct: 266 EVDLTLKQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDNVALQISEKIKRP 323

Query: 308 QKSLKNF 314
                  
Sbjct: 324 DSVKSEL 330


>gi|94314217|ref|YP_587426.1| flagellar motor switch protein FliM [Cupriavidus metallidurans
           CH34]
 gi|93358069|gb|ABF12157.1| flagellar motor switch protein FliM [Cupriavidus metallidurans
           CH34]
          Length = 336

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 93/304 (30%), Gaps = 10/304 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +      P +     R+                +   + + L       +    DIS  +
Sbjct: 33  ADDGGVRPYNLANQERIVRG------RLHTLEIINERFARALRTALFNFIRRGADISVGT 86

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+   + +       +   +             NLV  +++NL G       ++  
Sbjct: 87  VRIEKYGDFVRNLPVPTNLNLVHMKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEG 146

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +    +   Q   T      +          K       N+ V T 
Sbjct: 147 RDFTQTEQRIIRRMLDLTLSSYGQAWRTVHPIEFDYVRSEMHT--KFANVAGPNDAVVTT 204

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
             ++ +  V     + IP   +     + ++         +  +   + +     V +  
Sbjct: 205 AFHIELGAVGGQLHICIPFSMIEPLRDLLMNPLQDEVEVDKRWLGQLSNQLRAAEVELVA 264

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                ++T+ +V+ ++ G V+P             NG  +  C  G +   Y +R+   +
Sbjct: 265 EFTHLRSTVAEVLAMREGDVLPIELP--EHIFGKVNGVPVMQCGFGTMNGQYALRVERML 322

Query: 305 NFDQ 308
           N+  
Sbjct: 323 NYQD 326


>gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565]
 gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565]
          Length = 356

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +     +        R+                +   + + +       M    ++S 
Sbjct: 26  GGAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              Q  KF   +H+       +            I     LV  L+EN  G       ++
Sbjct: 80  NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++ +  +  +        +   +     E                 E + 
Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
             + ++ ++     F + +P   L     +  +  Q+   +           +   + V 
Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +  ++   + TL++++ L+ G +IP    E    ++       +  ++GR   N  ++IT
Sbjct: 258 LRAKLLETELTLRELMELRPGDIIPVDMPEN--LLVFVEDLPTFHAKMGRTKDNVALKIT 315

Query: 302 DRINFDQ 308
           D++   +
Sbjct: 316 DKLKRPE 322


>gi|161523223|ref|YP_001578235.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC
           17616]
 gi|189348920|ref|YP_001944548.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC
           17616]
 gi|221201776|ref|ZP_03574813.1| flagellar motor switch protein FliM [Burkholderia multivorans
           CGD2M]
 gi|221207719|ref|ZP_03580727.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2]
 gi|221214537|ref|ZP_03587507.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1]
 gi|160340652|gb|ABX13738.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC
           17616]
 gi|189332942|dbj|BAG42012.1| flagellar motor switch protein [Burkholderia multivorans ATCC
           17616]
 gi|221165427|gb|EED97903.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1]
 gi|221172565|gb|EEE05004.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2]
 gi|221178196|gb|EEE10606.1| flagellar motor switch protein FliM [Burkholderia multivorans
           CGD2M]
          Length = 332

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 87/303 (28%), Gaps = 11/303 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
              P +     R+                +   + + L       M    +IS +  +  
Sbjct: 34  GVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKVQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K+S    +       +   +             NLV  +++NL G       ++  R  +
Sbjct: 88  KYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  + +  +         + +               +       NE V     ++
Sbjct: 148 ATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFSI 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
                  +  + +P   +     +  S  Q ++       +   +++     V +   + 
Sbjct: 206 EFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAEVELTADLA 265

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
              TT + ++ L+ G V+P             +G  +  C  G     Y +R+   I+  
Sbjct: 266 EIPTTFEKILNLRAGDVLPLD--IADTITAKVDGVPVMECGYGIFNGQYALRVQKMISAS 323

Query: 308 QKS 310
              
Sbjct: 324 DTM 326


>gi|323527699|ref|YP_004229852.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001]
 gi|323384701|gb|ADX56792.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001]
          Length = 332

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 86/308 (27%), Gaps = 11/308 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           QS      P +     R+                +   + + L       M    +IS  
Sbjct: 29  QSERVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K+S    +       +   +             NLV  +++NL G       ++ 
Sbjct: 83  PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++  + +            + +               +       NE V  
Sbjct: 143 GRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEYMRSEMHT--QFANVATPNEIVIV 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              ++       +  + +P   +     I  S  Q ++       +   +++     V +
Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     T + ++ ++ G V+P             +G  +  C  G     Y +R+  
Sbjct: 261 TADLAQVPITFEQILNMRKGDVLPINIP--EQITAKVDGVPVMECGYGIFNGQYALRVQK 318

Query: 303 RINFDQKS 310
            I+     
Sbjct: 319 MISAADTM 326


>gi|296135698|ref|YP_003642940.1| flagellar motor switch protein FliM [Thiomonas intermedia K12]
 gi|294339869|emb|CAZ88232.1| Flagellar motor switch [Thiomonas sp. 3As]
 gi|295795820|gb|ADG30610.1| flagellar motor switch protein FliM [Thiomonas intermedia K12]
          Length = 336

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 90/304 (29%), Gaps = 11/304 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +      P       R+                +   + +         +    +IS +S
Sbjct: 30  ADEGGVRPYDLASQDRIVRG------RMPTLEVINERFARLWRVSLFNFLRRASEISVSS 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K++  I         +   +              L+ ++++N  G       ++  
Sbjct: 84  VKLTKYNEFIRGLVVPSNLNLVQMKPLRGTALFIFDPRLIFSVIDNFFGGDGRFHARIEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  + +E+++ KR +  +        +      P L         +        E V   
Sbjct: 144 RDFTPLEQRIIKRMLDMVFKEYKTAWAPVLPLEPELTRSEV--NPQFVNIATPTEVVIVS 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNID 243
             ++ IE    S  + IP   +        +             +     +  +  V + 
Sbjct: 202 TFDVEIEGGGGSLHVCIPYSMVEPIRDQLTTGMTTDRSEVDHRWVKALQTEMREAEVEMR 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +  ++  +++++ L++G V+P         I   +G  +   E GR      ++I  +
Sbjct: 262 VELLQRQILVRELLNLRVGDVLPVDMP--ETVIARVDGIPVLLGEYGRHEDKMALKIRQQ 319

Query: 304 INFD 307
           +  +
Sbjct: 320 LFPE 323


>gi|124516745|gb|EAY58253.1| Flagellar motor switch protein FliM [Leptospirillum rubarum]
          Length = 338

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 92/304 (30%), Gaps = 3/304 (0%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++  K      P+    L  +    +        +   + +F        +   V+ S  
Sbjct: 24  ETQAKAADSGEPVKQYNLASQERVIRGRMPTLEIINERFARFFQVTLSATLRKTVEFSPQ 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  KF   +         +   L S   N  +     +V  L++++ G S     ++ 
Sbjct: 84  GIEMVKFGDFVKKIPMPSNINILRLESLRRNILLIIDARMVYLLVDHMFGGSGRGHVKIE 143

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  S +E ++++  +        +  +        +         +        E V T
Sbjct: 144 GRDFSPIEARISRNVMDLAIGDFEKAWAPVHPM--PITYIRSEINPQFAAIVAPTEMVVT 201

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNI 242
           +   + I+    +  + IP  T+           Q+         I+    +  +  + I
Sbjct: 202 MAYRLEIDGQGRTIYICIPYSTIEPIKEKLYTGFQSDQYEVDSRWINRLQERVEEAPLEI 261

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +  I   + TL+D++  K G V            +   G   +    G    +  IRI  
Sbjct: 262 EAFIGETRFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLARPGIFRHHRAIRIER 321

Query: 303 RINF 306
           R+  
Sbjct: 322 RVPP 325


>gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
           19865]
 gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
           19865]
          Length = 337

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   E     E                 E+
Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMEVD--FEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++ +E       + +P   L     +  +  Q+   ++ +        +     
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +  K+ +L+ +  LK+G ++P     +    L      +++ E G    N  ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315

Query: 300 IT 301
           IT
Sbjct: 316 IT 317


>gi|295678044|ref|YP_003606568.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002]
 gi|295437887|gb|ADG17057.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002]
          Length = 332

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 88/310 (28%), Gaps = 11/310 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
             Q+      P +     R+                +   + + L       M    +IS
Sbjct: 27  SEQNDRTGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEIS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               +  K+S    +       +   +             NLV  +++NL G       +
Sbjct: 81  VGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTR 140

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++  + +            + +               +       NE V
Sbjct: 141 VEGRDFTQTEQRIITKLLNLTFEHYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIV 198

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
                ++   +   +  + +P   +     +  S  Q ++ +     +   +++     V
Sbjct: 199 IVTQFSIEFGSTGGTLHICMPYSMIEPIRDVLSSPIQGEAMDVDRRWVRVLSQQVQAAEV 258

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     T + ++ ++ G V+P             +G  +  C  G     Y +R+
Sbjct: 259 QLTADLAQVPVTFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRV 316

Query: 301 TDRINFDQKS 310
              I+     
Sbjct: 317 QKMISAADTM 326


>gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
          Length = 326

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 11/306 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q+              R+                +   + + +       +    +IS  
Sbjct: 31  QAHDGVARGYDFTSQDRIVRG------RMPTLEMINERFARQMRISLFNLLRRSAEISVG 84

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  KFS  +H+       +   +              LV  L++N  G       ++ 
Sbjct: 85  GIKMTKFSEYVHTLFVPTSLNMVKIKPLRGTALFVVDPKLVFILVDNFFGGDGRYHAKIE 144

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E ++ + T+ Q    L +  +   +     E        +        E V  
Sbjct: 145 GREFTPTELRVIRMTLDQAFTDLKKAWAPVMDLD--FEYINSEVNPQFANIVSPTEVVCV 202

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
            + ++ ++       + +P   +     +  +  Q+   +  E  I     +     V +
Sbjct: 203 SSFHIELDGGGGDLHVTMPYSMIEPMRELLDAGIQSDRSDVDERWIRALRDEVKAAEVEL 262

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            + +     +L+DV+ LK G +IP         +L A G  +   + G       I++T+
Sbjct: 263 SSMLTETTLSLEDVMRLKPGDIIPIDLP--EQVLLRAEGIPVLRGKFGVSDGYNAIKVTE 320

Query: 303 RINFDQ 308
           RI    
Sbjct: 321 RIRRAD 326


>gi|167560937|ref|ZP_02353853.1| flagellar motor switch protein FliM [Burkholderia oklahomensis
           EO147]
 gi|167568197|ref|ZP_02361071.1| flagellar motor switch protein FliM [Burkholderia oklahomensis
           C6786]
          Length = 332

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +      P +     R+                +   + + L       M    +IS + 
Sbjct: 30  AEASGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S    +       +   +             NLV  +++NL G       ++  
Sbjct: 84  VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  + +  +    +    + +               +       NE V   
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYSVAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
             ++       +  + +P   +     +  S  Q ++       +   +++     V + 
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +    TT + ++ L+ G V+P             +G  +  C  G     Y +R+   
Sbjct: 262 ADLAEIPTTFEKILNLRAGDVLPLD--IAETLTAKVDGVPVMECGYGIFNGQYALRVQKM 319

Query: 304 INFDQKS 310
           ++     
Sbjct: 320 VSASDTM 326


>gi|124265765|ref|YP_001019769.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
 gi|124258540|gb|ABM93534.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
          Length = 333

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 103/307 (33%), Gaps = 7/307 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
           + G+S    T  +    +        ++    +      +   + + +       +    
Sbjct: 18  ITGESQKLETEEVEQGGVRDYNLASQERIVRGRMPTMEIINERFSRNIRIGLFNFIRRTP 77

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +++  + +  K+S  +        F+  ++     +  I C   LV  +++ L G + + 
Sbjct: 78  EVAVGTIKVQKYSAFLREIVVPTNFNIMAVRPLRGSGLIVCDPTLVFAVIDALFGGAGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  S  E ++  R +  ISA   +  +        LE        +  T    +
Sbjct: 138 HTRIEGRDFSPTELRVISRLVEVISAEYKKAWAGVYPVE--LEYQRSEMQPQFATIAAPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V T +  + I + + +    IP  TL        S+ Q  +       +    ++   
Sbjct: 196 EIVVTTSFTVEIGDTSGTIHFCIPYATLEPIRDTLYSTVQGDANEPDRRWVKLLTQQIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V++   +     T++ ++ LK G  I              +G  ++ C  G     Y 
Sbjct: 256 AEVDLVAELAQAPATVEQLLALKPGDFIELDL--DQVVHAKVDGVPVFDCHYGTSNGKYA 313

Query: 298 IRITDRI 304
           I+I   +
Sbjct: 314 IKIDQLL 320


>gi|167834865|ref|ZP_02461748.1| flagellar motor switch protein FliM [Burkholderia thailandensis
           MSMB43]
          Length = 332

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +      P +     R+                +   + + L       M    +IS + 
Sbjct: 30  AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S    +       +   +             NLV  +++NL G       ++  
Sbjct: 84  VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  + +  +         + +  +            +       NE V   
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLAFEFVRSEMHT--QFANVATPNEIVIVT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
             ++       +  + +P   +     +  S  Q ++       +   +++     V + 
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +    TT + ++ L+ G V+P             +G  +  C  G     Y +R+   
Sbjct: 262 ADLAEVPTTFEKILNLRAGDVLPLD--IAESISAKVDGVPVMECGYGIFNGQYALRVQKM 319

Query: 304 INFDQKS 310
           I+     
Sbjct: 320 ISASDTM 326


>gi|190574232|ref|YP_001972077.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
           K279a]
 gi|190012154|emb|CAQ45777.1| putative flagellar motor switch protein FliM [Stenotrophomonas
           maltophilia K279a]
          Length = 334

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 11/302 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                      R+                +   + +         +    ++S    +  
Sbjct: 32  EARSYDFASQDRIIRG------RMPTLEMVHERFARLWRIGLFNLIRRSAELSVRGIELI 85

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF+  +HS       +            I     LV  +++N  G       ++  R  +
Sbjct: 86  KFNDYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFT 145

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++    + Q  A L +  +   +     E                 E+V    +++
Sbjct: 146 ATEMRVIHLLLKQTFADLREAWAPVMDVD--FEYINSEINPHFANIVTPREYVVVCRLHV 203

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++       + +P   L     +  +  Q+   ++ E        +     V + + + 
Sbjct: 204 ELDGGGGDIHVTLPYSMLEPIRELLDAGIQSDRNDRDESWGKTLREQLNIAEVTLSSVLA 263

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            K+ TL+D+  LK+G ++P     +    +      +++ E G       ++IT      
Sbjct: 264 SKRMTLRDLTQLKVGDILPIELSPQVP--VCVENIPVFTGEFGIANGMNAVKITATHPPG 321

Query: 308 QK 309
            +
Sbjct: 322 TR 323


>gi|206603652|gb|EDZ40132.1| Flagellar motor switch protein FliM) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 338

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 92/304 (30%), Gaps = 3/304 (0%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++  K      P+    L  +    +        +   + +F        +   V+ S  
Sbjct: 24  ETQAKAADSGEPVKQYNLASQERVIRGRMPTLEIINERFARFFQVTLSATLRKTVEFSPQ 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  KF   +         +   L S   N  +     +V  L++++ G S     ++ 
Sbjct: 84  GIEMVKFGDFVKKIPMPSNINILRLESLRRNILLIIDARMVYLLVDHMFGGSGRGHVKIE 143

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  S +E ++++  +        +  +        +         +        E V T
Sbjct: 144 GRDFSPIEARISRNVMDLAIGDFEKAWAPVHPM--PITYIRSEINPQFAAIVAPTEMVVT 201

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNI 242
           +   + I+    +  + IP  T+           Q+         I+    +  +  + I
Sbjct: 202 MAYRLEIDGQGRTIYICIPYSTIEPIKEKLYTGFQSDQYEVDSRWINRLQERVEEAPLEI 261

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +  I   + TL+D++  K G V            +   G   +    G    +  IRI  
Sbjct: 262 EAFIGEARFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLARPGIFRHHRAIRIER 321

Query: 303 RINF 306
           R+  
Sbjct: 322 RVPP 325


>gi|83720285|ref|YP_440587.1| flagellar motor switch protein FliM [Burkholderia thailandensis
           E264]
 gi|167579274|ref|ZP_02372148.1| flagellar motor switch protein FliM [Burkholderia thailandensis
           TXDOH]
 gi|167617380|ref|ZP_02386011.1| flagellar motor switch protein FliM [Burkholderia thailandensis
           Bt4]
 gi|83654110|gb|ABC38173.1| flagellar motor switch protein FliM [Burkholderia thailandensis
           E264]
          Length = 332

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 88/307 (28%), Gaps = 11/307 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +      P +     R+                +   + + L       M    +IS + 
Sbjct: 30  AESSGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S    +       +   +             NLV  +++NL G       ++  
Sbjct: 84  VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  + +  +         + +               +       NE V   
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYAVAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
             ++       +  + +P   +     +  S  Q ++       +   +++     V + 
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +    TT + ++ L+ G V+P             +G  +  C  G     Y +R+   
Sbjct: 262 ADLAEVPTTFEKILNLRAGDVLPLD--IADSITAKVDGVPVMECGYGIFNGQYALRVQKM 319

Query: 304 INFDQKS 310
           I+     
Sbjct: 320 ISASDTM 326


>gi|167464156|ref|ZP_02329245.1| flagellar motor switch protein FliM [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382382|ref|ZP_08056289.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153735|gb|EFX46110.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 332

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 106/316 (33%), Gaps = 13/316 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   +           R        K   +  + +   + ++L   F  ++   V I
Sbjct: 27  LKKEETQRKIRSYDFKRAVRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +    +   +   I S  +  + +            +    N+   +L++LLG    +  
Sbjct: 81  NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVHPNVAYAMLDHLLGGVGVSPS 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++   +L+ +E  + +R  ++    L +   T  +  P LE        +       NE 
Sbjct: 141 KIN--ALTEIETIVMERIFSKAFDSLQEAWKTVVDLQPRLEALET--NPQFMQIVSPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           +  I+++  I +      L IP   +              ++ ++++ + ++    +  Q
Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVIEPIMPRLSVHSWFVSQKKSRAPEEVEALQFRLNQ 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             +     +     T+ + + L +G VI           +    K  Y+   G V     
Sbjct: 257 AKLPFVAELGSSHITVHEFLNLSVGDVITLQKPVNEPLKIRIGDKYKYTGSPGTVRGKMA 316

Query: 298 IRITDRINFDQKSLKN 313
           ++I + ++  ++    
Sbjct: 317 VQINEPVSEGEEEYDE 332


>gi|226941271|ref|YP_002796345.1| flagellar motor switch protein FliM [Laribacter hongkongensis
           HLHK9]
 gi|226716198|gb|ACO75336.1| FliM [Laribacter hongkongensis HLHK9]
          Length = 329

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 94/311 (30%), Gaps = 11/311 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +          R+                +   + + L       +  + +IS   
Sbjct: 28  SAASSVKNYDIGRQERIVRG------RMPTLEIINERFARNLRIGLFNFIRRNAEISVGP 81

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S  I +       +   +        +    +LV  +++NL G+      ++  
Sbjct: 82  VKVQKYSEFIRNLVVPTNLNLCHVKPLRGTALLIFDPDLVFLVVDNLFGSDGRYHVRVEG 141

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +  + +   +                     +        E V ++
Sbjct: 142 RDFTPTEQRIIRRLLDVVFSEYQKAWEPVYPIEFLYMRSEM--NTQFANIATPTEVVVSM 199

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNID 243
              + +      F + +P   +        S+            +   +R+     V + 
Sbjct: 200 TFRIELGAGGGDFHVCMPYSMVEPIRDQLSSTMAADRTEIDNRWVSLLSRQVQIAEVELV 259

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + TL D++ LK G VIP    E   A +S  G  +  C  G     Y +R+   
Sbjct: 260 ATLAEAQITLGDILNLKTGDVIPVEIPESIVADVS--GIPVLDCRYGTANGQYALRVERL 317

Query: 304 INFDQKSLKNF 314
           +    +  +  
Sbjct: 318 LAGAHELEQGL 328


>gi|332524239|ref|ZP_08400465.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus
           JA2]
 gi|332107574|gb|EGJ08798.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus
           JA2]
          Length = 334

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 93/304 (30%), Gaps = 11/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +               R+                +   + + +       +    ++S  
Sbjct: 29  EQTAGGIRDYDLSSQERIVRG------RMPTMEVINERFARNIRIGLFNLIRKSPEVSIG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  KFS  +        F+  S+     +  I C  N+V  +++ L G + +   ++ 
Sbjct: 83  GIKVQKFSAFLREIVVPTNFNLVSVKPLRGSGLIVCDPNVVFAVIDALFGGAGKFHTRIE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  S  E ++  R +  I A   +           LE        +       +E V +
Sbjct: 143 GRDFSPTELRVILRLVECIIAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVS 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
               + I + + +    IP  TL     +  S+ Q  S       ++    +     V++
Sbjct: 201 TAFTLEIGDTSGAVHFCIPYSTLEPIRDVLYSTIQGDSAEPDRRWVNLLKHQIQAAEVDL 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     T++ +++ K G  I              +G  ++ C  G     Y I+I  
Sbjct: 261 VAELGHAPATVEQLLSFKPGDFIELDLDP--MIQAKVDGVPVFDCHYGTTNGRYAIKIDR 318

Query: 303 RINF 306
            +  
Sbjct: 319 LLTS 322


>gi|71278806|ref|YP_268251.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H]
 gi|71144546|gb|AAZ25019.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H]
          Length = 354

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 92/305 (30%), Gaps = 11/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
                TS        R+                +   + + +       M    ++S   
Sbjct: 31  QSRDGTSDYDFSSQDRIVRG------RMPTLEMVNERFARHMRISLFNMMRRTAEVSING 84

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF   IH+       +            I     LV  L++N  G       ++  
Sbjct: 85  IQMIKFGEYIHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVDNFFGGDGRYHAKIEG 144

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +  +  +     +  S   +   + E                 E V   
Sbjct: 145 REFTPTERRIIQMLLKLVFEDYKEAWSPVMDV--SFEYLDSEVNPSMANIVSPTEVVVIS 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
           + ++ ++     F + +P   L     +  +  Q+  E+           +   + V I+
Sbjct: 203 SFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTDMRWSKALRDEIMDVPVTIN 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           T+      +L  V+ L+ G +IP    +     +       +  +LGR   N  ++I  +
Sbjct: 263 TKFIEVDISLSQVMELQAGDIIPIEMPDN--ITVLIEDLPTFRAKLGRSRDNIALKIESK 320

Query: 304 INFDQ 308
           I   +
Sbjct: 321 IRRPE 325


>gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 349

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 96/309 (31%), Gaps = 11/309 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +    +  + +        R+                +   + + +       +    ++
Sbjct: 24  LHDNDVANDVATFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEV 77

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S    Q  KF    ++       +            I     LV  L+EN  G       
Sbjct: 78  SINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHA 137

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++ +  +  +     +  S         E                 E 
Sbjct: 138 KIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEV 195

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           +   + ++ ++     F +++P   +     +  +  Q+   +           +   + 
Sbjct: 196 IVVSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVP 255

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           VN+  ++     +L+D++ L++G VIP        A +       Y  ++GR G N  ++
Sbjct: 256 VNLRAKLLDVDLSLRDLMELQVGDVIPIDMP--EQATIFVEDLPTYHAKMGRSGDNVALK 313

Query: 300 ITDRINFDQ 308
           I++++    
Sbjct: 314 ISEKLQRPD 322


>gi|187926920|ref|YP_001893265.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J]
 gi|241665249|ref|YP_002983608.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D]
 gi|187728674|gb|ACD29838.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J]
 gi|240867276|gb|ACS64936.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D]
          Length = 335

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 99/310 (31%), Gaps = 9/310 (2%)

Query: 1   MRGQSIHKNTSPL--HPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDL 56
           ++G S   +  P+   P  +        ++    +      +   + +         M  
Sbjct: 16  LKGVSDEADEEPVEADPSGIRTYNLGSQERIVRGRMPTLEIINERFARNWRIGLFNFMRR 75

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           + +IS    +  K+S  I +       +   +             NL+  +++NL G   
Sbjct: 76  NAEISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFGGDG 135

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
               ++  R  + VE+++ +R +  +     +                     +      
Sbjct: 136 RFHMRVEGRDFTDVEQRIIQRMLQLVFEHYARAWQPVYPIDFEFLRMEMHT--EFANVAT 193

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKT 235
            NE V T   ++ + N      + +P   +        S+ Q ++    +  +   +++ 
Sbjct: 194 PNEVVVTTTFSLELGNNGGDVHICMPYTMIEPIRDRLTSAIQGEALEVDKRWLRLLSQQV 253

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
               V +   +      + D++ +K+G VIP             +G  +  C  G     
Sbjct: 254 QTAEVELIADLATANVQVSDILNMKVGDVIPLEL--DDVVTAKVDGVPVMECNYGTFNGQ 311

Query: 296 YTIRITDRIN 305
           Y +R+   +N
Sbjct: 312 YALRVNRMLN 321


>gi|187478203|ref|YP_786227.1| flagellar motor switch protein [Bordetella avium 197N]
 gi|115422789|emb|CAJ49317.1| flagellar motor switch protein [Bordetella avium 197N]
          Length = 334

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 95/309 (30%), Gaps = 12/309 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
              S              R+       +   +    +   + + +  +    M    DI+
Sbjct: 28  SSSSEDNGARAYDLSSPDRVV------RRRMQTLELINERFARNMRHVLLNFMRRSADIT 81

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             S +  K++    +       +   +             +LV  ++++L G       +
Sbjct: 82  VGSIKIIKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPSLVFLVIDSLFGGDGRYHTR 141

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +T E+++ +R +        +          +          K  +   +NE V
Sbjct: 142 VEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFDYVRSEMHT--KFASITGNNEVV 199

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLN 239
              + ++          + +P   +     +       S  E   +      +R+    +
Sbjct: 200 VVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDSALEEVDQRWSQQLSRQVRSAD 259

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +++        ++++ ++ LK+G V+P             +G  +  C  G     Y +R
Sbjct: 260 IDLVAEFARIPSSIRGLMNLKVGDVLPVDVP--ESITAHVDGVPLMECSYGVFNGKYALR 317

Query: 300 ITDRINFDQ 308
           + + +N D 
Sbjct: 318 VQNMLNQDD 326


>gi|89899368|ref|YP_521839.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118]
 gi|89344105|gb|ABD68308.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118]
          Length = 329

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 95/279 (34%), Gaps = 5/279 (1%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + + L       +    +IS       ++S  +        F+  ++  
Sbjct: 50  RMPTMEIVNERFARNLRVGLFNFIRRSPEISVGPVTVQRYSAFLRELAVPTNFNIVAIRP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
              +  I C  +LV  +++ L G   +   ++  R  S  E+++  R +  I+    +  
Sbjct: 110 LRGSGMIVCEPSLVFGVIDTLYGGIGKFQARIEGRDFSATEQRVINRLVDVITEEYKKAW 169

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                    LE        +       +E V + +  + I  +A S    +P  TL    
Sbjct: 170 KGVYPLE--LEYQRSEMQPQFANIATPSEIVISTSFQLEIGEIAGSIHFCMPYATLEPIR 227

Query: 211 LIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            I   S+Q  S    +  ++   ++     + +   +     T++ ++ +K G  I    
Sbjct: 228 DILYSSTQGDSIEVDKRWVNVLTQEIQAAEITLVAELARADATVEQLLAMKTGDFIELDR 287

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              +   ++  G  ++ C+ G     Y IRI   +  + 
Sbjct: 288 P--SRIEVTVEGVPVFECQYGTHNAKYAIRIDKSLRGND 324


>gi|269103169|ref|ZP_06155866.1| flagellar motor switch protein FliM [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163067|gb|EEZ41563.1| flagellar motor switch protein FliM [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 347

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 93/305 (30%), Gaps = 11/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S              R+                +   + + +       +    ++S   
Sbjct: 28  SSETGVITFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSING 81

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF    ++       +            +     L+  L+EN  G       ++  
Sbjct: 82  VQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLIFILVENFFGGDGRFHAKIEG 141

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +  +  +     +  S         E                 E +   
Sbjct: 142 REFTPTERRIIQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVS 199

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
           + ++ ++     F +++P   +     +  +  Q+   +           +   + VNI 
Sbjct: 200 SFHIELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSRALREEIMDIPVNIR 259

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            ++     TL+D++ L++G +IP        A +       Y  ++GR G N  ++I+++
Sbjct: 260 AKLLDVDLTLRDLMELQVGDIIPVDMP--DTATVFVEDLPTYRAKMGRSGDNVALKISEK 317

Query: 304 INFDQ 308
           +    
Sbjct: 318 LKRPD 322


>gi|21231367|ref|NP_637284.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|188991610|ref|YP_001903620.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113030|gb|AAM41208.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|167733370|emb|CAP51571.1| Flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris]
          Length = 337

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   +     E                 E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++ +E       + +P   L     +  +  Q+   ++ +        +     
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +  K+ +L+ +  LKIG ++P     +    L      +++ E G    N  ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315

Query: 300 IT 301
           IT
Sbjct: 316 IT 317


>gi|194365650|ref|YP_002028260.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
           R551-3]
 gi|194348454|gb|ACF51577.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
           R551-3]
          Length = 334

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 11/302 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                      R+                +   + +         +    ++S    +  
Sbjct: 32  EARSYDFASQDRIIRG------RMPTLEMVHERFARLWRIGLFNLIRRSAELSVRGIELI 85

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF+  +HS       +            I     LV  +++N  G       ++  R  +
Sbjct: 86  KFNDYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFT 145

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++    + Q  A L +  +   +     E                 E+V    +++
Sbjct: 146 ATEMRVIHLLLKQTFADLREAWAPVMDVD--FEYINSEINPHFANIVTPREYVVVCRLHV 203

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++       + +P   L     +  +  Q+   ++ E        +     V + + + 
Sbjct: 204 ELDGGGGDIHVTLPYSMLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLA 263

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            K+ TL+D+  LK+G ++P     +    L      +++ E G       ++IT      
Sbjct: 264 SKRMTLRDLTQLKVGDILPIELSPQVP--LCVENIPVFTGEFGIANGMNAVKITATHPPG 321

Query: 308 QK 309
            +
Sbjct: 322 TR 323


>gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14]
 gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14]
          Length = 349

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 95/304 (31%), Gaps = 11/304 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
           +  + +        R+                +   + + +       +    ++S    
Sbjct: 29  VANDVATFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 82

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           Q  KF    ++       +            I     LV  L+EN  G       ++  R
Sbjct: 83  QMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGR 142

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ +  +  +     +  S         E                 E +   +
Sbjct: 143 EFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSS 200

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ ++     F +++P   +     +  +  Q+   +           +   + VN+  
Sbjct: 201 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRA 260

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           ++     +L+D++ L++G VIP        A +       Y  ++GR G N  ++I++++
Sbjct: 261 KLLDVDLSLRDLMELQVGDVIPIDMP--EQATIFVEDLPTYHAKMGRSGDNVALKISEKL 318

Query: 305 NFDQ 308
               
Sbjct: 319 QRPD 322


>gi|42766718|gb|AAS45442.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei]
          Length = 332

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +      P +     R+                +   + + L       M    +IS + 
Sbjct: 30  AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S    +       +   + S           NLV  +++NL G       ++  
Sbjct: 84  VKVQKYSEFTRNLPIPTNLNLVHVKSLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  + +  +         + +               +       NE V   
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
             ++       +  + +P   +     +  S  Q ++       +   +++     V + 
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +    TT + ++ L+ G V+P             +G  +  C  G     Y +R+   
Sbjct: 262 ADLAEVPTTFEKILNLRTGDVLPLDIT--DSITAKVDGVPVMECGYGIFNGQYALRVQRM 319

Query: 304 INFDQKS 310
           I+     
Sbjct: 320 ISASDTM 326


>gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
           SV96]
 gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
           SV96]
          Length = 331

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 96/297 (32%), Gaps = 10/297 (3%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
                     R+                +   + +F+       +    +I  +  Q  K
Sbjct: 45  VREYDFASQERIVRG------RMPTLEMVNERFARFIRISLFNFLRRSAEIFISGIQVQK 98

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           FS  I         +    +       I     LV T+++N  G + +   Q   R  + 
Sbjct: 99  FSEYIQGLLVPTNLTIVRFNPLRGKALIVIDPRLVFTVVDNFFGGAGQFYNQTEGREFTP 158

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E ++ +  I  I   L +      E     E        +        E +    +++ 
Sbjct: 159 TEMRVVRIIIDMIFKDLKEAWKPVMELD--FEYVGAEINPRFANIIGPGEIIVISTIHVE 216

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           +E       + +P   L     +  +  + S             +  +  V+I++ +  K
Sbjct: 217 LEGGGGDVNIAMPYAMLEPIRELLDAISSDSGEVDGGWQAALRGEVLRAEVSINSLLVEK 276

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             T++DV+ LK G VIP         IL A G  ++  ++G    NY I+I D++  
Sbjct: 277 NMTIRDVMRLKKGDVIPIDMP--DTVILKAEGIPVFEGKVGISDGNYAIQIIDKVKS 331


>gi|59712452|ref|YP_205228.1| flagellar motor switch protein FliM [Vibrio fischeri ES114]
 gi|197335836|ref|YP_002156671.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11]
 gi|59480553|gb|AAW86340.1| flagellar motor switch protein FliM [Vibrio fischeri ES114]
 gi|197317326|gb|ACH66773.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11]
          Length = 344

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 86/297 (28%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       +    ++S       KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVSMVKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            +     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  I     +  S         E                 E +   + ++ ++ 
Sbjct: 151 RIIQLLLKVIFEDYKEAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F ++ P   +     +  +  Q+   +           +   + V +   +   + 
Sbjct: 209 GGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESQI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +L+D++ L+ G +IP        A +       Y  ++G+      I+IT++I    
Sbjct: 269 SLRDLMELEAGDIIPVEMP--EAATVFVEDLPTYRGKVGQSNDKLAIQITEKIKRPD 323


>gi|288942630|ref|YP_003444870.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM
           180]
 gi|288898002|gb|ADC63838.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM
           180]
          Length = 325

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 11/302 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
                 P       R+                +   + ++L       +    +IS    
Sbjct: 34  TDGQARPYDFATQDRIVRG------RMPTLDMINERFARYLRVHLFNLLRRSSEISVIGA 87

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +  KFS  +HS       +   +              LV  L++N  G       ++  R
Sbjct: 88  RVTKFSEYLHSLYVPTSLNLVRVYPLHGTALFVFDPKLVFGLVDNFFGGDGRYYSRIEGR 147

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             + +E ++ K  +    + + +             +       +        E V   +
Sbjct: 148 DFTPMEMRVIKNLLDASFSDMQKAWEPVMHLDFEFINAEV--NPQFANIVSPTEIVVIND 205

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ +E    +  +  P   +     +  +  Q+      +        +     V I +
Sbjct: 206 FHIELEGGGGNMHVTFPYSMIEPIREVLDTGLQSDRSGVDQRWQRALEEEIPLAKVEISS 265

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     T++ ++ +K G +IP         +L+     ++  + G       I+I + I
Sbjct: 266 VLTEVTLTVEQLLEVKPGDIIPVDLP--ETIVLNVEDIPLFRGKFGVSNGINAIKIMEHI 323

Query: 305 NF 306
             
Sbjct: 324 KH 325


>gi|253573530|ref|ZP_04850873.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847058|gb|EES75063.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 333

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 108/316 (34%), Gaps = 13/316 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   + ++L   F  ++   V I
Sbjct: 27  LKKEETQKKIRSYDFKRAVRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +    +   +   I S  +  + +            +    N+   +L+ LLG       
Sbjct: 81  NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAFAMLDRLLGGLGTAPS 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++    L+ +E  + +R  ++    L +   T  + +P +E        +       NE 
Sbjct: 141 KVGT--LTEIETIIMERIFSRAFESLQEAWKTVVDINPRMEALET--NPQFMQIVSPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           +  I+++  I + +    L IP   +              ++ +++  + ++    +  +
Sbjct: 197 IALISLSTKIGDTSGMINLCIPHVVIEPIMPKLSVHHWFVSQKKSRVPEEVEALRNRVNK 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + I   +   + T+++ ++L +G VI      +    +    +  Y    G V     
Sbjct: 257 AKLPIIAELGESQITVREFLSLSVGDVISLNKPVQEGLQIRVGDRLKYIGSPGTVKDRLA 316

Query: 298 IRITDRINFDQKSLKN 313
           ++I + ++   + L  
Sbjct: 317 VQIDEIVSEGAEELDE 332


>gi|171057710|ref|YP_001790059.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6]
 gi|170775155|gb|ACB33294.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6]
          Length = 334

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 94/306 (30%), Gaps = 12/306 (3%)

Query: 1   MRGQSIHKN-TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
           +  +   K            R+                +   + + +       +    +
Sbjct: 25  LEQEDTPKGGIRDYDLASQERIVRG------RMPTLEIINERFSRNIRIGLFNFIRKTPE 78

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +S    +  K+S  +        F+  S+     +  I C   LV ++++ L G S +  
Sbjct: 79  VSVGGIKVQKYSAFLRETVVPTNFNIVSVRPLRGSGMIVCDPTLVFSVIDALFGGSGKFH 138

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  R  S  E+++  R +  I+    +           LE        +        E
Sbjct: 139 TRIEGRDFSPTEQRVISRIVEVIATEYKKAWQGIYPLE--LEYQRSEMQPQFANIAAPGE 196

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQL 238
            V T +  + I +   +    IP  TL     +   S+Q  S       +     +    
Sbjct: 197 IVVTTSFTLEIGDATGTIHFCIPYATLEPIRDVLYSSTQGDSAEPDRRWVKLMTHQIQAA 256

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V +   +     T++ ++ LK G  I     +     +  +G  +   + G     Y +
Sbjct: 257 QVQLVAELAHAPATVEQLLALKAGDFIELDLIKS--IEVKVDGVPVMEAQYGTSNGKYAL 314

Query: 299 RITDRI 304
           ++   +
Sbjct: 315 KVDRML 320


>gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila]
          Length = 356

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +     +        R+                +   + + +       M    ++S 
Sbjct: 26  GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              Q  KF   +H+       +            I     LV  L+EN  G       ++
Sbjct: 80  NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++ +  +  +        +   +     E                 E + 
Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
             + ++ ++     F + +P   L     +  +  Q+   +           +   + V 
Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +  ++   + TL++++ L+ G +IP    E    ++       +  ++GR   N  ++IT
Sbjct: 258 LRAKLLETELTLRELMELQPGDIIPVEMPEN--LLVFVEDLPTFHAKMGRTKDNVALKIT 315

Query: 302 DRINFDQ 308
           D++   +
Sbjct: 316 DKLKRPE 322


>gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 356

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +     +        R+                +   + + +       M    ++S 
Sbjct: 26  GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              Q  KF   +H+       +            I     LV  L+EN  G       ++
Sbjct: 80  NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++ +  +  +        +   +     E                 E + 
Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
             + ++ ++     F + +P   L     +  +  Q+   +           +   + V 
Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +  ++   + TL++++ L+ G +IP    E    ++       +  ++GR   N  ++IT
Sbjct: 258 LRAKLLETELTLRELMELQPGDIIPVEMPEN--LLVFVEDLPTFHAKMGRTKDNVALKIT 315

Query: 302 DRINFDQ 308
           D++   +
Sbjct: 316 DKLKRPE 322


>gi|254523832|ref|ZP_05135887.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14]
 gi|219721423|gb|EED39948.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14]
          Length = 334

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 11/302 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                      R+                +   + +         +    ++S    +  
Sbjct: 32  EARSYDFASQDRIIRG------RMPTLEMVHERFARLWRIGLFNLIRRSAELSVRGIELI 85

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF+  +HS       +            I     LV  +++N  G       ++  R  +
Sbjct: 86  KFNDYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFT 145

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++    + Q  A L +  +   +     E                 E+V    +++
Sbjct: 146 ATEMRVIHLLLKQTFADLREAWAPVMDVD--FEYINSEINPHFANIVTPREYVVVCRLHV 203

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++       + +P   L     +  +  Q+   ++ E        +     V + + + 
Sbjct: 204 ELDGGGGDIHVTLPYSMLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLA 263

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            K+ TL+D+  LK+G V+P     +    L      +++ E G       ++IT      
Sbjct: 264 SKRMTLRDLTRLKVGDVLPIELNPQVP--LCVENIPVFTGEFGIANGMNAVKITATHPPG 321

Query: 308 QK 309
            +
Sbjct: 322 TR 323


>gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 349

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 95/309 (30%), Gaps = 11/309 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +       + +        R+                +   + + +       +    ++
Sbjct: 24  LHDDEASSDVATFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEV 77

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S    Q  KF    ++       +            I     LV  L+EN  G       
Sbjct: 78  SINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHA 137

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++ +  +  +     +  S         E                 E 
Sbjct: 138 KIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEV 195

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           +   + ++ ++     F +++P   +     +  +  Q+   +           +   + 
Sbjct: 196 IVVSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVP 255

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           VN+  ++     +L+D++ L++G VIP        A +       Y  ++GR G N  ++
Sbjct: 256 VNLRAKLLDVDLSLRDLMELQVGDVIPIDMP--EQATIFIEDLPTYHAKMGRSGDNVALK 313

Query: 300 ITDRINFDQ 308
           I++++    
Sbjct: 314 ISEKLKRPD 322


>gi|58582231|ref|YP_201247.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624124|ref|YP_451496.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188576791|ref|YP_001913720.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576983|ref|YP_001913912.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58426825|gb|AAW75862.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368064|dbj|BAE69222.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521243|gb|ACD59188.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521435|gb|ACD59380.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 337

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 16/302 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEARQYDLSSQDRIIRGRM-----------PTMEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   +    LE                 E+
Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--LEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
           V     ++ +E       + +P   L     +  +  Q+   ++ +        +     
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +  K+ +L+ +  LK+G ++P     +    L      +++ E G    N  ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315

Query: 300 IT 301
           IT
Sbjct: 316 IT 317


>gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila]
          Length = 356

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +     +        R+                +   + + +       M    ++S 
Sbjct: 26  GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              Q  KF   +H+       +            I     LV  L+EN  G       ++
Sbjct: 80  NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++ +  +  +        +   +     E                 E + 
Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
             + ++ ++     F + +P   L     +  +  Q+   +           +   + V 
Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +  ++     TL++++ L+ G +IP    E    ++       +  ++GR  +N  ++IT
Sbjct: 258 LRAKLLETDLTLRELMELRPGDIIPVEMPEN--LLVYVEDLPTFHAKMGRTKENVALKIT 315

Query: 302 DRINFDQ 308
           D++   +
Sbjct: 316 DKLKRPE 322


>gi|239817144|ref|YP_002946054.1| flagellar motor switch protein FliM [Variovorax paradoxus S110]
 gi|239803721|gb|ACS20788.1| flagellar motor switch protein FliM [Variovorax paradoxus S110]
          Length = 333

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 83/280 (29%), Gaps = 4/280 (1%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           ++       +   + + L       M    DIS       ++   +         +   +
Sbjct: 50  RSRMHTLEVINERFARHLRSSLLNFMRRSPDISVGPVHIQQYGEFVRHLPVPANINMLHM 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                         LV  +++NL G+      ++  R  +  E+++ KR +         
Sbjct: 110 KPLRGTALFVFDPKLVFLVVDNLFGSDGRYHVRVEGRDFTRTEQRIIKRLLNLTLQCYAD 169

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                   S +          K       NE V    + +    V     + IP   +  
Sbjct: 170 AWQPVFPLSFDYVRAEMHG--KLANIVAPNEVVINTTLQIEFGPVGGFLHVCIPYSMIEP 227

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
              +  +         +  +   +++    +V +        +T+ +V+ L++G V+P  
Sbjct: 228 IRDLLSNPVQDEIEVDKRWVRQMSQQMQSADVELSAEFITLPSTIGEVLKLQVGDVLPIE 287

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                      +G  +  C  G   + Y +R+   I+   
Sbjct: 288 LPTS--ITARVDGIPVMECGYGVSNERYALRVLQMISHQD 325


>gi|85711035|ref|ZP_01042095.1| flagellar motor switch protein [Idiomarina baltica OS145]
 gi|85694948|gb|EAQ32886.1| flagellar motor switch protein [Idiomarina baltica OS145]
          Length = 354

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 11/302 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
                       R+                +   + + +       M    ++S    Q 
Sbjct: 32  SEALDYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRTAEVSINGVQM 85

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF   +H+       +            I     LV  L++N  G       ++  R  
Sbjct: 86  LKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVDNFFGGDGRYHAKIEGREF 145

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++ +  +  I     +  +   +     E                 E +   + +
Sbjct: 146 TPTERRIIQMLLKLIFEDYKEAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIVISSFH 203

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + ++     F + +P   L     +  +  Q+  E+           +   + V +  ++
Sbjct: 204 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTDMRWSKALRDEIMDVPVEMVAKL 263

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                TL++V+  + G +IP    +     +       +  ++GR   N  ++I+D+I  
Sbjct: 264 ADVDVTLREVMDFEEGDIIPLEVPDN--LTVFIEDLPTFHAKMGRSRDNIALKISDKIRR 321

Query: 307 DQ 308
            +
Sbjct: 322 PE 323


>gi|46579323|ref|YP_010131.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603117|ref|YP_967517.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4]
 gi|46448737|gb|AAS95390.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563346|gb|ABM29090.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4]
 gi|311233150|gb|ADP86004.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris RCH1]
          Length = 326

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 89/300 (29%), Gaps = 10/300 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q       P       R+            +   +   + +         +   V+++  
Sbjct: 29  QHDDSGIVPFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAVRKRVELNPI 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S    KF   + S       +   +     N  I   + LV  L+EN  G S     ++ 
Sbjct: 83  SIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVDSRLVFALVENFFGGSGSQP-KIE 141

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + +E+ +  R I      + +      +    L         +       ++ V  
Sbjct: 142 GREFTRIEQAIVDRVIHIALDNMEESWRPVHDVHLELVR--SEINPQFAAIVPPSDVVVV 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNI 242
           I   + +++   S V+ +P  T+         S Q +        +     +  +  V +
Sbjct: 200 ITFEVELDSAIGSMVICLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLMETPVEL 259

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             R    K T   ++ L++G V+           ++  G   +    G V  N   +I  
Sbjct: 260 KVRFGETKITGNQLLRLQVGDVLLLDTDTDDMLEVTIAGVTKFWGLGGTVKANKAFQIVK 319


>gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
 gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
          Length = 334

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 99/311 (31%), Gaps = 7/311 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
           + G+S       +    +        ++    +      +   + +         +    
Sbjct: 18  VTGESQRSEVVEVDLGQVRSYDISSQERIVRGRMPTMEIVNERFARNFRIGLFNFIRRSP 77

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S  +    ++S  +        F+  ++     N  I C  +LV  +++ L G +   
Sbjct: 78  EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  ST E+++  R +  I     +            +        +       +
Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQRSEM--QPQFANIATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQ 237
           E V +    + I +++ S  + +P  TL     +   S+Q  +       +    R+   
Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ ++ G  I            S  G  ++ C+ G     Y 
Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313

Query: 298 IRITDRINFDQ 308
           IR+   +    
Sbjct: 314 IRVERSLRGGD 324


>gi|237731993|ref|ZP_04562474.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2]
 gi|226907532|gb|EEH93450.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2]
          Length = 349

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 96/307 (31%), Gaps = 10/307 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G +   +  P  P    R+       +   +    +   + +         +    DI
Sbjct: 41  ISGIAKESDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDI 94

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  + +   +     +       +   L        +  S +LV   ++NL G       
Sbjct: 95  TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 154

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++  R +       +                  +     N     N+ 
Sbjct: 155 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDI 213

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLN 239
           V     ++ I N+   F + +P   +     + ++   + S N+ ++  +   R+     
Sbjct: 214 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 273

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +          L  ++ LK G V+P         I   +G  + + + G V   Y +R
Sbjct: 274 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 331

Query: 300 ITDRINF 306
           +   IN 
Sbjct: 332 VEHLINP 338


>gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum
           ferrodiazotrophum]
          Length = 341

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 88/301 (29%), Gaps = 9/301 (2%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K T   +     R+                +   + +F        +   V+ S  S + 
Sbjct: 36  KKTREYNLASQERVIRG------RMPTLEIVNERFARFFQITLSSTLRKAVEFSPVSTEM 89

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF   I         +   L     NF +     +V  L+++L G       ++  R  
Sbjct: 90  IKFGEFIKKIPLPSNINILRLEPMKRNFLLIIDARMVYLLVDHLFGGVGRGHVKVEGRDF 149

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E ++ +  + Q      +  +        +         + +      E V  +   
Sbjct: 150 SPIENRITRNILNQAIGDFEKAWAPVHHI--GVSYIRSEINPQFSAIVSPTEMVIALTYR 207

Query: 188 MTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + I+       + IP  T+           Q+         I    ++   + + I   +
Sbjct: 208 LDIDGQGRPVYICIPYSTIEPIKEKLYTGFQSDQYEVDHRWILRLRQQIDSVPIKIVAEL 267

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              K  L +V+  K G +I           ++      +    G    +  +RI +R+  
Sbjct: 268 GTTKARLSEVLAWKPGDMITLDQYVDDPIKITVEKALRFKARPGVYRSSRAVRIEERVFP 327

Query: 307 D 307
           D
Sbjct: 328 D 328


>gi|327441044|dbj|BAK17409.1| flagellar motor switch protein [Solibacillus silvestris StLB046]
          Length = 331

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 97/285 (34%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V I+  S     F   + S     + +   
Sbjct: 49  SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + N+  ++L+ L+G +  +   + N  L+ +E K+      +    L 
Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRLMGGAGGSHSNVDN--LTEIETKIMTNLFERSFDNLR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +      E  P L         +       NE V  I+ N  I        + IP   L 
Sbjct: 167 EAWENVAEIDPMLV--ELEVNPQFLQMISPNETVVVISFNTIIGETTGMINICIPHVVLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q  ++  S +       +  Q  + I   +     T++D +T+ +G V
Sbjct: 225 PIVPNLSVRYWMQTNTKEISPEQSKMLESRVKQAKLPIIAELGSSDITIEDFLTMAVGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           IP   + +    L       ++ + G++     ++I D +    +
Sbjct: 285 IPLKQKIENPLTLKVGSLPKFTVQPGKLNNKMAVQIIDPLKGGDE 329


>gi|330814983|ref|YP_004358688.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3]
 gi|327367376|gb|AEA58732.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3]
          Length = 332

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 11/302 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
               P +     R+                +   + + L       M    +IS +  + 
Sbjct: 33  SGVRPYNLATQERIVRG------RMPGMEIINDRFARLLRVGIFNFMRRTAEISVSQVKV 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            K+S    +       +   +             NLV  +++NL G       ++  R  
Sbjct: 87  QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E ++  + +  +         + +      E      + +       NE V     +
Sbjct: 147 TQTEMRIISKLLHMVFEHYTVAWKSVRPLQ--FEHVRSEMHTQFANVATPNEIVIVTQFS 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           +       +  + +P   +     +  S  Q ++       +   +++     V +   +
Sbjct: 205 IEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAEVELTADL 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
               TT + ++ L++G V+P             +G  +  C  G     Y +R+   I  
Sbjct: 265 AEVPTTFERILNLRVGDVLPLD--IGDAVTAKVDGVPVMECGYGIFNGQYALRVNRMIGA 322

Query: 307 DQ 308
             
Sbjct: 323 SD 324


>gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
 gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
          Length = 334

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 94/297 (31%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + +         +    +IS  +    ++S 
Sbjct: 38  YDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGTVSVQRYSA 91

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
            +        F+  ++     +  I C  +LV  +++ L G   +   ++  R  S  E+
Sbjct: 92  FLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKFQTRIEGRDFSPTEQ 151

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++  R +  I A   +           LE        +       +E V +    + I +
Sbjct: 152 RVINRLVDVICAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVSTAFQLEIGD 209

Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
           ++ +  + +P  TL     +   S+Q  S       +    R+     V +   +     
Sbjct: 210 LSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVTLVAELARADA 269

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           T++ ++ +K G  I            S  G  I+ C+ G     Y IRI + +    
Sbjct: 270 TVEQLLAMKPGDFIELDREP--RIQASIGGVPIFECQYGTHNSKYAIRIEECLRNPD 324


>gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 334

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 94/297 (31%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + +         +    +IS  +    ++S 
Sbjct: 38  YDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGTVSVQRYSA 91

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
            +        F+  ++     +  I C  +LV  +++ L G   +   ++  R  S  E+
Sbjct: 92  FLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKFQTRIEGRDFSPTEQ 151

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++  R +  I A   +           LE        +       +E V +    + I +
Sbjct: 152 RVINRLVDVICAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVSTAFQLEIGD 209

Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
           ++ +  + +P  TL     +   S+Q  S       +    R+     V +   +     
Sbjct: 210 LSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVTLVAELARADA 269

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           T++ ++ +K G  I            S  G  I+ C+ G     Y IRI + +    
Sbjct: 270 TVEQLLAMKPGDFIELDREP--RIQASIGGVPIFECQYGTHNSKYAIRIEECLRNPD 324


>gi|50120652|ref|YP_049819.1| flagellar motor switch protein FliM [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611178|emb|CAG74624.1| flagellar motor switch protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 337

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 95/309 (30%), Gaps = 10/309 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
                 P  P    R+       +   +    +   + +         +    DI+    
Sbjct: 32  TDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMSLFNLLRRSPDITVGGI 85

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +   +     +       +   L           S +LV   ++NL G       ++  R
Sbjct: 86  KIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGR 145

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ KR +        +  +   +          +     N     N+ V T  
Sbjct: 146 EFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTP 204

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
            ++ I ++   F + IP   +     +  +   + S  + +   D  A++     + +  
Sbjct: 205 FHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVA 264

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                   L  ++ L+ G V+P         +   +G  + + + G +   Y +R+   I
Sbjct: 265 SFVDIPLRLSKILKLQPGDVLPIDKP--DKIVAHVDGVPVLTSQYGTLNGQYALRVEHLI 322

Query: 305 NFDQKSLKN 313
           N    SL N
Sbjct: 323 NPILNSLDN 331


>gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
 gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
 gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
 gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
          Length = 334

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 100/311 (32%), Gaps = 7/311 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
           + G+S       +    +        ++    +      +   + +         +    
Sbjct: 18  VTGESQRSEVVEVDLGQVRSYDISSQERIVRGRMPTMEIVNERFARNFRIGLFNFIRRSP 77

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S  +    ++S  +        F+  ++     N  I C  +LV  +++ L G +   
Sbjct: 78  EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  ST E+++  R +  I     +            +        +       +
Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQRSEM--QPQFANIATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQ 237
           E V +    + I +++ S  + +P  TL     +   S+Q  +       +    R+   
Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ ++ G  I            S  G  ++ C+ G     Y 
Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313

Query: 298 IRITDRINFDQ 308
           IR+   +   +
Sbjct: 314 IRVERSLRGGE 324


>gi|114320135|ref|YP_741818.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226529|gb|ABI56328.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 395

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 90/290 (31%), Gaps = 5/290 (1%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
            T +    +        +   + +         +    ++S    +  KF   +H+    
Sbjct: 39  FTAEERIVRGRMPTLEMINERFARLFRIGLFNMLRRTPEVSVVGVEMMKFGEYVHTLFVP 98

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
              +   +              LV  +++N  G       ++  R  +  E ++ +  I 
Sbjct: 99  TSLNLMRVHPLRGTGLFIIDPKLVFIVVDNFFGGDGRFFVKIEGREFTPTELRVIRMLID 158

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
           Q    L +  +     +   E  +     +       +E V     ++ ++       + 
Sbjct: 159 QAFENLEEAWNPV--MNAEFEYMHSEVNPQFANIVSPSEVVVVSKFHVELDGGGGDIHVT 216

Query: 201 IPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           +P   +     +  +  Q+      E        +     V + + +   + +L+DV+ +
Sbjct: 217 LPYTMIEPIRELLDAGVQSDRNEVDERWTRSLREEMKFAEVELSSVLTEVEVSLRDVMNM 276

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           K G +IP          + A    ++    G    N  I+IT+RI    +
Sbjct: 277 KPGDIIPVELP--EAVKVYAEDMPVFRGRYGVRHGNTAIKITERIQPRAE 324


>gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
 gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
          Length = 334

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 95/305 (31%), Gaps = 11/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +              R+                +   + +         +    +IS  +
Sbjct: 30  AEAGAVRNYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGT 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
               ++S  +        F+  ++     +  I C  +LV  +++ L G   +   ++  
Sbjct: 84  VSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKFQTRIEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  S  E+++  R +  I A   +           LE        +       +E V + 
Sbjct: 144 RDFSPTEQRVINRLVDVICAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVST 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
              + I +++ +  + +P  TL     +   S+Q  S       +    R+     V + 
Sbjct: 202 AFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVTLV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +     T++ ++ +K G  I            S  G  I+ C+ G     Y IRI + 
Sbjct: 262 AELAQADATVEQLLAMKPGDFIELDREP--RIRASIGGVPIFECQYGTHNSKYAIRIEEC 319

Query: 304 INFDQ 308
           +    
Sbjct: 320 LRNAD 324


>gi|261340410|ref|ZP_05968268.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC
           35316]
 gi|288317502|gb|EFC56440.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC
           35316]
          Length = 334

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 95/305 (31%), Gaps = 10/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   N  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GLAGDDNIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  +   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ L+ G V+P         I   +G  + + + G +   Y +R+ 
Sbjct: 261 LVANFADVSMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVE 318

Query: 302 DRINF 306
             IN 
Sbjct: 319 HLINP 323


>gi|238025700|ref|YP_002909931.1| flagellar motor switch protein FliM [Burkholderia glumae BGR1]
 gi|237874894|gb|ACR27227.1| Flagellar motor switch protein FliM [Burkholderia glumae BGR1]
          Length = 332

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 93/306 (30%), Gaps = 11/306 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             K   P +     R+                +   + + L       M    +IS +  
Sbjct: 31  EQKGVRPYNLATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRTAEISVSQV 84

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +  K+S    +       +   +             NLV  +++NL G       ++  R
Sbjct: 85  KVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGR 144

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E ++  R +  +    +    + +      E      + +       NE V    
Sbjct: 145 DFTQTEMRIISRLLHLVFEHYSVAWKSVRPLQ--FEHVRSEMHTQFANVATPNEIVIVTQ 202

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++       +  + +P   +     +  S  Q ++       +   +++     V +  
Sbjct: 203 FSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELTA 262

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +    +T + ++ L++G V+P     +   I   +G  +  C  G     Y +R+   I
Sbjct: 263 NLTEMPSTFEKILNLRVGDVLPID--VEESIIAKVDGVPVMECGYGIFNGQYALRVNRMI 320

Query: 305 NFDQKS 310
           +     
Sbjct: 321 SASDTM 326


>gi|261821166|ref|YP_003259272.1| flagellar motor switch protein FliM [Pectobacterium wasabiae
           WPP163]
 gi|261605179|gb|ACX87665.1| flagellar motor switch protein FliM [Pectobacterium wasabiae
           WPP163]
          Length = 337

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 96/309 (31%), Gaps = 10/309 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              +  P  P    R+       +   +    +   + +         +    DI+    
Sbjct: 32  TDGDVKPYDPNTQRRVI------RERLQALEIINERFARQFRMALFNLLRRSPDITVGGI 85

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +   +     +       +   L           S +LV   ++NL G       ++  R
Sbjct: 86  KIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGR 145

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ KR +        +  +   +          +     N     N+ V T  
Sbjct: 146 EFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTP 204

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
            ++ I ++   F + IP   +     +  +   + S  + +   D  A++     + +  
Sbjct: 205 FHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVA 264

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                   L  ++ L+ G V+P         +   +G  + + + G +   Y +R+   I
Sbjct: 265 NFVDIPLRLSKILKLQPGDVLPIDKP--EKIVAHVDGVPVLTSQYGTLNGQYALRVEHLI 322

Query: 305 NFDQKSLKN 313
           N    SL N
Sbjct: 323 NPILNSLDN 331


>gi|121533750|ref|ZP_01665577.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans
           Nor1]
 gi|121307741|gb|EAX48656.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans
           Nor1]
          Length = 334

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 105/313 (33%), Gaps = 14/313 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   +           +        K   +    L   + + +       +   V I
Sbjct: 29  IKSEQKERKIKVYDFKRPDKF------SKDQIRTLYMLHENFARLINTYLSAHLRTLVHI 82

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  S     +   I S     V S   +     N  +  + N+V  +++ L G +     
Sbjct: 83  NVASVDQLTYEEFIRSLPNPSVISIFQMPPLKGNVILELNPNIVFAVIDRLFGGTGVAPV 142

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +   R L+ +E+ + +R +A++     +         P +         +       ++ 
Sbjct: 143 KP--RPLTDIEEAIIRRVLAKMLEGFQEAWKQVVAVEPRIGAIET--NPQFAQIVPPSDM 198

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS----QNKSENQSEDLIDPFARKTY 236
           V  I +   I        + IP   L        ++       ++  +++ I    RK  
Sbjct: 199 VVIITLQAKIGQAEGLINVCIPYLVLEPIMSKLTTTFWVALGTTKQVTQENITTLQRKLQ 258

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           + +V +   +     T++D++ L +G V+    R      +    +E + C+ G VG   
Sbjct: 259 RTSVPVIVELGRATVTVQDLLDLAVGDVLQLESRFDGELSVIIGQREKFKCKPGLVGGKV 318

Query: 297 TIRITDRINFDQK 309
            ++IT+ +    +
Sbjct: 319 AVQITEVMLKGDE 331


>gi|262276388|ref|ZP_06054197.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
 gi|262220196|gb|EEY71512.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
          Length = 353

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 92/308 (29%), Gaps = 11/308 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
            G       S        R+                +   + + +       +    ++S
Sbjct: 27  SGSEDVGAASNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMIRKTAEVS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               Q  KF    ++       +            I     LV  L+EN  G       +
Sbjct: 81  INGVQMVKFGEYQNTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAR 140

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ +  +  I        +         E                 E +
Sbjct: 141 IEGREFTPTERRVIQMLLKLIFEDYKDAWAPVMRVE--FEYLDSEVNPAMANIVSPTEVI 198

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
              + ++ ++     F +++P   +     +  +  Q+   +  +        +   + V
Sbjct: 199 VVSSFHIELDGGGGDFHVVMPYSMVEPIRELLDAGIQSDKMDTDKRWSKALQDEVMDVEV 258

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           ++  ++     +L+D++ ++ G VIP          +       +  +LG+   N  I+I
Sbjct: 259 SLTAKLLETTLSLRDLMEMEAGDVIPVKMP--DACTVYIEDLPTFRGKLGQSNDNLAIKI 316

Query: 301 TDRINFDQ 308
           TD++   +
Sbjct: 317 TDKLKRPE 324


>gi|251789181|ref|YP_003003902.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591]
 gi|247537802|gb|ACT06423.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591]
          Length = 338

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 98/316 (31%), Gaps = 16/316 (5%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
                  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 32  QKDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 85

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L           S +LV   ++NL G       ++  
Sbjct: 86  IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 145

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +       +   +   +          +     N     N+ V T 
Sbjct: 146 REFTHTEQRVVRRMLKLALDAYSDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIVVTT 204

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I  +   F + IP   +     +  +   + S+ + +   +  A++     + + 
Sbjct: 205 PFHLEIGTLTGEFSICIPFSMIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELV 264

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  V+ LK G ++P         +   +G  + +C+ G +   Y +R+   
Sbjct: 265 ANFVDIPVRLSKVLKLKPGDILPIDKP--ERLVAHVDGVPVLTCQYGTLDGQYALRVEHL 322

Query: 304 INF------DQKSLKN 313
           IN       D++ L  
Sbjct: 323 INPILNSLNDEEPLNE 338


>gi|126653737|ref|ZP_01725655.1| flagellar motor switch protein M [Bacillus sp. B14905]
 gi|126589701|gb|EAZ83837.1| flagellar motor switch protein M [Bacillus sp. B14905]
          Length = 331

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 101/285 (35%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V I+  S     F   + S     + +   
Sbjct: 49  SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + N+  ++L+ L+G S  +   + N  L+ +E K+      +    L 
Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +      E  P L         +       NE V  I++N  I   +    + IP   L 
Sbjct: 167 EAWENVAEIDPILV--ELEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q  ++  S +       +  Q  + +   + L   T++D +T+++G V
Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQVGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    +     +L       ++ + G+ GK   I+I D +    +
Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329


>gi|253688959|ref|YP_003018149.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755537|gb|ACT13613.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 337

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 96/309 (31%), Gaps = 10/309 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
           +     P  P    R+       +   +    +   + +         +    DI+    
Sbjct: 32  VDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGGI 85

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +   +     +       +   L           S +LV   ++NL G       ++  R
Sbjct: 86  KIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGR 145

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ KR +        +  +   +          +     N     N+ V T  
Sbjct: 146 EFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTP 204

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
            ++ I ++   F + IP   +     +  +   + S  + +   D  A++     + +  
Sbjct: 205 FHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVA 264

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                   L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   I
Sbjct: 265 SFVDIPLRLSKILKLQPGDVLPIDKP--DKIIAHVDGVPVMTSQYGTLNGQYALRVEHLI 322

Query: 305 NFDQKSLKN 313
           N    SL N
Sbjct: 323 NPILNSLDN 331


>gi|33592495|ref|NP_880139.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I]
 gi|33601558|ref|NP_889118.1| flagellar motor switch protein FliM [Bordetella bronchiseptica
           RB50]
 gi|33572141|emb|CAE41684.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I]
 gi|33575994|emb|CAE33074.1| flagellar motor switch protein FliM [Bordetella bronchiseptica
           RB50]
 gi|332381913|gb|AEE66760.1| flagellar motor switch protein FliM [Bordetella pertussis CS]
          Length = 336

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 94/310 (30%), Gaps = 9/310 (2%)

Query: 4   QSIHKNTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
               +           R   L+      +   +    +   + + +  +    M  + DI
Sbjct: 21  GESDEKQPAGDEAGAPRAYDLSSPERVVRRRMQTLELINERFARHMRNVLLNFMRRNADI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  + +  K++    +       +   +             NLV  ++++L G       
Sbjct: 81  TVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHT 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +T E+++ +R +        +                     K  +   +NE 
Sbjct: 141 RVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEV 198

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQL 238
           V     ++          + +P   +     +       +  E   +       R+    
Sbjct: 199 VVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDTALEEVDQRWAQQLQRQVRSA 258

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           ++++        +++ +++ +K G V+P             +G  +  C  G     Y +
Sbjct: 259 DIDLVAEFGHIPSSIGELMRMKTGDVLPIAVP--ETVTAHVDGVPLMECGYGVFNGRYAL 316

Query: 299 RITDRINFDQ 308
           R+ + IN+D 
Sbjct: 317 RVQNLINYDD 326


>gi|300693352|ref|YP_003749325.1| flagellar motor switching and energizing component [Ralstonia
           solanacearum PSI07]
 gi|299075389|emb|CBJ34684.1| flagellar motor switching and energizing component [Ralstonia
           solanacearum PSI07]
          Length = 335

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 91/276 (32%), Gaps = 5/276 (1%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + +         +  + +IS    +  K+S  I +       +   +  
Sbjct: 50  RMPTLEIINERFARNWRMGLFNFLRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                      NL+  ++++L G       ++  R  + VE+++ +R +  +     +  
Sbjct: 110 LRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVEGRDFTQVEQRIIQRMLQLMFDHYGKAW 169

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                     E      + +       NE V + + +M + +      + +P   +    
Sbjct: 170 QPIYPIE--FEALRMEMHTEFANVATPNEVVVSTSFSMELGSNGGDVHVCMPYTMIEPIR 227

Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  S+ Q ++    +  +   +++     V +   +      + D++ +K+G VIP   
Sbjct: 228 DLLTSAIQGEALEVDKRWVRLLSQQVQTAEVELVAHLANANVQVSDILNMKVGDVIPLEL 287

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                     +G  +  C  G     Y +R+   +N
Sbjct: 288 --DDSVTAKVDGVPVMECAYGTFNGQYALRVNRMLN 321


>gi|332305666|ref|YP_004433517.1| flagellar motor switch protein FliM [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172995|gb|AEE22249.1| flagellar motor switch protein FliM [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 352

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 11/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +          R+                +   + + +       M    ++S    Q
Sbjct: 31  DGSALEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGIQ 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF   IH+       +            I     LV  L++N  G       ++  R 
Sbjct: 85  MIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +  +  I     +  +   +   + E                 E V   + 
Sbjct: 145 FTPTERRIIQMLLKLIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ ++     F + +P   L     +  +  Q+  E+           +   + V + T 
Sbjct: 203 HIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTH 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L+ ++ +K G +IP          +       +  +LGR   N  ++ITD+I 
Sbjct: 263 MMDLTLSLQKIMDMKAGDIIPIDMP--EHITVMIEELPTFRAKLGRSRDNLALKITDKIP 320

Query: 306 F 306
            
Sbjct: 321 R 321


>gi|295098287|emb|CBK87377.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 334

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 95/305 (31%), Gaps = 10/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   N  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GLTGDDNIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  +   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ L+ G V+P         I   +G  + + + G +   Y +R+ 
Sbjct: 261 LVANFADISMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVE 318

Query: 302 DRINF 306
             IN 
Sbjct: 319 HLINP 323


>gi|311068153|ref|YP_003973076.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942]
 gi|310868670|gb|ADP32145.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942]
          Length = 332

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 101/313 (32%), Gaps = 14/313 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   + + L   F  ++   + I
Sbjct: 28  LKKEDSEKKVKVYDFKRALRF------SKDQIRSLTRIHDNFARLLTTHFSAQLRTYIHI 81

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +S     +   I S     + +   +        +  +  +   +++ ++G    +  
Sbjct: 82  SVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNPTVAYAMMDRVMGGIGISHN 141

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++ +  L+ +E K+             +   +  +  P  E        +       NE 
Sbjct: 142 KVDS--LTEIETKIISNLFENALGNYKEAWQSIADIEP--EMTEFEVNPQFVQMVSPNET 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  I++N  I  ++    L IP   L             Q++      +      ++   
Sbjct: 198 VVVISLNTQIGEISGVINLCIPHVVLEPIIPKLSVHYWMQSERNEPKPEETKSLEKRIMT 257

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + +   +   + T+++ ++L++G  I           +    K  +  + GRV +   
Sbjct: 258 AQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQA 317

Query: 298 IRITDR-INFDQK 309
           ++I D  I  ++ 
Sbjct: 318 VQILDHDIRGEKD 330


>gi|163801852|ref|ZP_02195749.1| flagellar motor switch protein M [Vibrio sp. AND4]
 gi|159174360|gb|EDP59164.1| flagellar motor switch protein M [Vibrio sp. AND4]
          Length = 348

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 90/301 (29%), Gaps = 11/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            +NT+        R+                +   + + +       +    ++S    Q
Sbjct: 31  DENTTNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF    ++       +            I     LV  L+EN  G       ++  R 
Sbjct: 85  MMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +  +  +     +  S         E                 E +   + 
Sbjct: 145 FTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ ++     F +++P   +     +  +  Q+               +     VN    
Sbjct: 203 HIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVN 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +  K  +L+D++ L+ G VIP    E   A +       Y  ++GR      +++++ I 
Sbjct: 263 LLEKDISLRDLMELQPGDVIPIDMPEN--ATMFIEDLPTYRVKMGRSEDKLAVQVSEEIE 320

Query: 306 F 306
            
Sbjct: 321 R 321


>gi|317406219|gb|EFV86466.1| flagellar motor switch protein [Achromobacter xylosoxidans C54]
          Length = 335

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 100/307 (32%), Gaps = 6/307 (1%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S  ++  P        L+      +   +    +   + + +  +    M    DI+  S
Sbjct: 25  SKKESAGPNDGARAYDLSSPDRVVRRRMQTLELINERFARQMRSVLLNFMRRSADITVGS 84

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K++    +       +   +             NLV  ++++L G       ++  
Sbjct: 85  IKIQKYADFERNLPVPSNLNMVQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEG 144

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +T E+++ +R +        +          +          K  +   +NE V   
Sbjct: 145 RDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFDYVRSEMHT--KFASITGNNEVVVVT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNI 242
           + ++          + +P   +     +      ++  E   +      +R+    ++++
Sbjct: 203 SFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWSQQLSRQVRSADIDV 262

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                   +++++++ +K+G ++P         I   +G  +  C  G     Y +R+ +
Sbjct: 263 VAEFARIPSSIRELMRMKVGDILPVDVP--QTVIAHVDGVPLMECGYGVFNGQYALRVQN 320

Query: 303 RINFDQK 309
               D +
Sbjct: 321 MFTHDTE 327


>gi|109899345|ref|YP_662600.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica
           T6c]
 gi|109701626|gb|ABG41546.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica
           T6c]
          Length = 352

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 90/296 (30%), Gaps = 11/296 (3%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
                   R+                +   + + +       M    ++S    Q  KF 
Sbjct: 36  EYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGIQMIKFG 89

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
             IH+       +            I     LV  L++N  G       ++  R  +  E
Sbjct: 90  EYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGREFTPTE 149

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +++ +  +  I     +  +   +   + E                 E V   + ++ ++
Sbjct: 150 RRIIQMLLKLIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSFHIELD 207

Query: 192 NVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
                F + +P   L     +  +  Q+  E+           +   + V + T +    
Sbjct: 208 GGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTHMMDLT 267

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            +L+ ++ +K G +IP          +       +  +LGR   N  ++ITD+I  
Sbjct: 268 LSLQKIMDMKAGDIIPIDMP--EHITVMIEELPTFRAKLGRSRDNLALKITDKIPR 321


>gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1]
 gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1]
          Length = 332

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 99/285 (34%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V I+  S     F   + S  +  + +   
Sbjct: 49  SKDQIRSLTRIHENFARILTTYFSAQLRTYVQITVVSADQVPFEEFVRSVPKMTILNIFD 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +  +  + N+   +++ ++G     I ++ N  L+ +E K+      +    L 
Sbjct: 109 VPPLDGHILMEVNPNIGYAMMDRVMGGKGTGINKIEN--LTEIETKIMSNLFERAFDNLR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
              S   E  P L         +       NE V  I+MN TI   +    +IIP   L 
Sbjct: 167 DAWSNIAEIDPMLS--EFEVNPQFLQMVSPNETVVVISMNTTIGETSGMINIIIPHVVLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q K+++      +   ++     V I   +     T+ D + L IG V
Sbjct: 225 PIIPKLSVSYWMQTKNKDIDPQETEMLEKRIKTAQVPIVAELGDSDITIDDFLMLDIGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    R      +       ++ + G + K   ++I D +   ++
Sbjct: 285 IQLNKRIDAPLTIKVGEIPKFTAQPGELNKRLAVQILDSLKGGEE 329


>gi|156933435|ref|YP_001437351.1| flagellar motor switch protein FliM [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531689|gb|ABU76515.1| hypothetical protein ESA_01253 [Cronobacter sakazakii ATCC BAA-894]
          Length = 334

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 92/301 (30%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 31  DGDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           S +LV   ++NL G       ++  R 
Sbjct: 85  IQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +       +                  +     N     N+ V     
Sbjct: 145 FTHTEQRVINRMLKLALEAYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I N+   F + +P   +     + ++   + S  + ++  D   R+     + +   
Sbjct: 204 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQNWRDTLVRQVQHSELELIAN 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ LK G V+P         ++  +G  + + + G V   Y +R+   IN
Sbjct: 264 FAEIPLRLSKILKLKPGDVLPIDKP--DRILVHVDGVPVLTSQYGTVNGQYALRVEHLIN 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|207728361|ref|YP_002256755.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2]
 gi|206591607|emb|CAQ57219.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2]
          Length = 335

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 96/303 (31%), Gaps = 11/303 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q+        +     R+                +   + +         +  + +IS  
Sbjct: 29  QAEAAGVRTYNLGSQERIVRG------RMPTLEIINERFARNWRMGLFNFLRRNAEISVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K+S  I +       +   +             NL+  ++++L G       ++ 
Sbjct: 83  PVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + VE+++ +R +A +     +            E      + +       NE V +
Sbjct: 143 GRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIE--FEPLRMEMHTEFANVATPNEVVVS 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              +M + +      + +P   +     +  S+ Q ++    +  +   +++     V +
Sbjct: 201 TRFSMELGSNGGDVHVCMPYTMIEPIRDLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEV 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +      + D++ +K+G VIP             +G  +  C  G     Y +R+  
Sbjct: 261 VAHLANANVHVSDILNMKVGDVIPLEL--DDSVTARVDGVPVMECAYGTFNGQYALRVNR 318

Query: 303 RIN 305
            +N
Sbjct: 319 MLN 321


>gi|307131596|ref|YP_003883612.1| flagellar motor switch protein fliM [Dickeya dadantii 3937]
 gi|306529125|gb|ADM99055.1| Flagellar motor switch protein fliM [Dickeya dadantii 3937]
          Length = 338

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 99/316 (31%), Gaps = 16/316 (5%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
               +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 32  QKDGDVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 85

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L           S +LV   ++NL G       ++  
Sbjct: 86  IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 145

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +       +   +   +          +     N     N+ V T 
Sbjct: 146 REFTHTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIVVTT 204

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I  +   F + IP   +     +  +   + S+ + +   +  A++     + + 
Sbjct: 205 PFHLEIGTLTGEFSICIPFSMIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELV 264

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  V+ LK G ++P         +   +G  + +C+ G +   Y +R+   
Sbjct: 265 ANFVDIPVRLSKVLKLKPGDILPIDKP--ERLVAHVDGVPVLTCQYGTLDGQYALRVEHL 322

Query: 304 INF------DQKSLKN 313
           IN       D++ L  
Sbjct: 323 INPILNSLNDEEPLNE 338


>gi|299534775|ref|ZP_07048105.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1]
 gi|298729863|gb|EFI70408.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1]
          Length = 331

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 102/285 (35%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V I+  S     F   + S     + +   
Sbjct: 49  SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + N+  ++L+ L+G S  +   + N  L+ +E K+      +    L 
Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +      E  P L         +       NE V  I++N  I   +    + IP   L 
Sbjct: 167 EAWENVAEIDPILV--ELEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q  ++  S +       +  Q  + +   + L   T++D +T+++G V
Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAQLPLSVELGLTDITIEDFLTMQVGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    + +   +L       ++ + G+ GK   I+I D +    +
Sbjct: 285 IQLDQKIEAPLLLKVGTLPKFTVQPGKKGKKLAIQIIDPLKGGDE 329


>gi|312876509|ref|ZP_07736492.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796720|gb|EFR13066.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 329

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 97/305 (31%), Gaps = 13/305 (4%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            KN         ++        K   +    +   Y + +       +   V +   S +
Sbjct: 33  EKNIRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +    +S     V    + S    +     +  L   +++ +LG   + I ++  R+
Sbjct: 87  QLTYYEFSNSLSNPVVMGVVNFSPLKGSIVFEMAPELAFAMIDRVLGGFGKGIDKV--RT 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E  L +R + Q+     +         P +E        +       NE V  + +
Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIIHIRPRIEKIET--NPQFTQIVSPNETVALVTI 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
            M +        + +P   +                ++  SE+  +   +K  +  V + 
Sbjct: 203 TMKVGEAEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + T+++ + L++G V+    R+     +    K  +    GR      ++IT  
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322

Query: 304 INFDQ 308
              + 
Sbjct: 323 EEGED 327


>gi|292669771|ref|ZP_06603197.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541]
 gi|292648568|gb|EFF66540.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541]
          Length = 333

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 94/286 (32%), Gaps = 8/286 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    L   + + L       +   +DI   S +   +   + S     V    +
Sbjct: 49  SKDQIRTLFMLHESFSRLLNTYLSASLRAMIDIEVMSVEQMTYQEFVQSMGNPSVIGIIA 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L     N  I    ++    ++ + G   +   +  +R+L+ +E  + +R I  +     
Sbjct: 109 LPPLKGNIIIEVGTDIAFAYIDRIFGGEGKPGVK--SRALTDIEAAVMRRFIDTVINYFR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   E  PN E        +       ++ V  I +++ + +V     + IP   L 
Sbjct: 167 EAWSNVIEFRPNFETMET--NPQFAQIVPPSDMVVLITIHVKMGDVEGMMNVCIPYLVLE 224

Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
                  +S     +  +  + + +    RK  +  V     +     T+ + +TL  G 
Sbjct: 225 PVMSKLTTSFWVASSVDKESTPEQVAELQRKIERTWVPFSVELGSVDITINEFLTLGFGD 284

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+      +   +        +    G  GK   ++I+  I  D  
Sbjct: 285 VLQLDTLAQDELVCYVGTNPKFRAHPGTAGKRMAVQISGIIEGDDD 330


>gi|227112534|ref|ZP_03826190.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 337

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 97/310 (31%), Gaps = 10/310 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
            +     P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 31  QVDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 84

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L           S +LV   ++NL G       ++  
Sbjct: 85  IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 144

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ KR +        +  +   +          +     N     N+ V T 
Sbjct: 145 REFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTT 203

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I ++   F + IP   +     +  +   + S  + +   D  A++     + + 
Sbjct: 204 PFHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELV 263

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ L+ G V+P         +   +G  + + + G +   Y +R+   
Sbjct: 264 ASFVDIPLRLSKILKLQPGDVLPIDKP--DKIVAHVDGVPVLTSQYGTLNGQYALRVEHL 321

Query: 304 INFDQKSLKN 313
           IN    SL N
Sbjct: 322 INPILNSLDN 331


>gi|26248214|ref|NP_754254.1| flagellar motor switch protein FliM [Escherichia coli CFT073]
 gi|91211163|ref|YP_541149.1| flagellar motor switch protein FliM [Escherichia coli UTI89]
 gi|110642051|ref|YP_669781.1| flagellar motor switch protein FliM [Escherichia coli 536]
 gi|117624085|ref|YP_852998.1| flagellar motor switch protein FliM [Escherichia coli APEC O1]
 gi|237705904|ref|ZP_04536385.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA]
 gi|331642566|ref|ZP_08343701.1| flagellar motor switch protein FliM [Escherichia coli H736]
 gi|331647539|ref|ZP_08348631.1| flagellar motor switch protein FliM [Escherichia coli M605]
 gi|331653357|ref|ZP_08354362.1| flagellar motor switch protein FliM [Escherichia coli M718]
 gi|331673458|ref|ZP_08374226.1| flagellar motor switch protein FliM [Escherichia coli TA280]
 gi|331677827|ref|ZP_08378502.1| flagellar motor switch protein FliM [Escherichia coli H591]
 gi|332278888|ref|ZP_08391301.1| flagellar motor switch protein FliM [Shigella sp. D9]
 gi|26108618|gb|AAN80821.1|AE016762_74 Flagellar motor switch protein fliM [Escherichia coli CFT073]
 gi|91072737|gb|ABE07618.1| flagellar motor switch protein FliM [Escherichia coli UTI89]
 gi|110343643|gb|ABG69880.1| flagellar motor switch protein FliM [Escherichia coli 536]
 gi|115513209|gb|ABJ01284.1| Flagellar motor switch protein [Escherichia coli APEC O1]
 gi|226900661|gb|EEH86920.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA]
 gi|331039364|gb|EGI11584.1| flagellar motor switch protein FliM [Escherichia coli H736]
 gi|331043263|gb|EGI15401.1| flagellar motor switch protein FliM [Escherichia coli M605]
 gi|331049455|gb|EGI21527.1| flagellar motor switch protein FliM [Escherichia coli M718]
 gi|331069656|gb|EGI41043.1| flagellar motor switch protein FliM [Escherichia coli TA280]
 gi|331074287|gb|EGI45607.1| flagellar motor switch protein FliM [Escherichia coli H591]
 gi|332101240|gb|EGJ04586.1| flagellar motor switch protein FliM [Shigella sp. D9]
          Length = 349

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 45  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 98

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 99  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 217

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335

Query: 304 INF 306
           IN 
Sbjct: 336 INP 338


>gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
           DSM 16646]
 gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
           DSM 16646]
          Length = 331

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 13/312 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ ++  K           +        K        +   + + L   F  ++   V I
Sbjct: 27  IKKEANEKKIKVYDFKKPNKF------SKEQLNTLHLIHENFSRQLITFFSTQLRTLVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           + +S     +S  I S     +              I  + ++  ++++ LLG S E   
Sbjct: 81  NASSVDQMPYSEFISSIPNPSIIGIVDFQPLRGAIIIAMNVSMAFSIIDRLLGGSGEYKD 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +   R  + +E  +  R  +++  ++ +      E  P  +        +       NE 
Sbjct: 141 KP--REPTEIEANILHRVYSKLVKLMQEAWQDILEIHPVFDKLET--NPQFVQLVSPNEA 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  I +N  I        + IP   +              N  +   E  I    RK   
Sbjct: 197 VALITINTRIGKTDGLINICIPYIVIEPVMSRLSTKIWLSNSKKESPESFIKTITRKLEN 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           +N  I   I   K T+++ + L +G VI       +   +    K  Y   +G+    + 
Sbjct: 257 VNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEVDVYVYDKLKYKGIMGKRNGRFA 316

Query: 298 IRITDRINFDQK 309
           +RI   I+   +
Sbjct: 317 VRINKVISERDE 328


>gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
 gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
          Length = 348

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 92/304 (30%), Gaps = 11/304 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
                S        R+                +   + + +       +    ++S    
Sbjct: 29  SETGISSFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 82

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           Q  KF    ++       +            I     LV  L+EN  G       ++  R
Sbjct: 83  QMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGR 142

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ +  +  +     +  S         E                 E +   +
Sbjct: 143 EFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSS 200

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ ++     F +++P   +     +  +  Q+   ++          +   + VN+  
Sbjct: 201 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRA 260

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           ++     +L+D++ L+ G +IP        A +       Y  ++G+ G N  ++IT ++
Sbjct: 261 KLLDVDLSLRDLMELQAGDIIPIDVP--ESATVFVEDLPTYRAKMGKSGDNIALKITQKL 318

Query: 305 NFDQ 308
               
Sbjct: 319 KRPD 322


>gi|300696948|ref|YP_003747609.1| flagellar motor switching and energizing component [Ralstonia
           solanacearum CFBP2957]
 gi|299073672|emb|CBJ53192.1| flagellar motor switching and energizing component [Ralstonia
           solanacearum CFBP2957]
          Length = 335

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 96/303 (31%), Gaps = 11/303 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q+        +     R+                +   + +         +  + +IS  
Sbjct: 29  QAEAAGVRTYNLGSQERIVRG------RMPTLEIINERFARNWRMGLFNFLRRNAEISVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K+S  I +       +   +             NL+  ++++L G       ++ 
Sbjct: 83  PVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + VE+++ +R +A +     +            E      + +       NE V +
Sbjct: 143 GRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIE--FEPLRMEMHTEFANVATPNEVVVS 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              +M + +      + +P   +     +  S+ Q ++    +  +   +++     V +
Sbjct: 201 TRFSMELGSNGGDVHVCMPYTMIEPIRDLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEV 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +      + D++ +K+G VIP             +G  +  C  G     Y +R+  
Sbjct: 261 VAHLANANVHVSDILNMKVGDVIPLEL--DDFVTARVDGVPVMECAYGTFNGQYALRVNR 318

Query: 303 RIN 305
            +N
Sbjct: 319 MLN 321


>gi|110805914|ref|YP_689434.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401]
 gi|110615462|gb|ABF04129.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401]
          Length = 349

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 45  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 98

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 99  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 217

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   NG  + + + G +   Y +RI   
Sbjct: 278 ANFADISLHLSQILKLKPGDVLPIEKP--DRIIAHVNGVPVLTSQYGTLNGQYALRIEHL 335

Query: 304 INF 306
           IN 
Sbjct: 336 INP 338


>gi|312621580|ref|YP_004023193.1| flagellar motor switch protein flim [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202047|gb|ADQ45374.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 329

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 98/305 (32%), Gaps = 13/305 (4%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            KN         ++        K   +    +   Y + +       +   V +   S +
Sbjct: 33  EKNVRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +    +S     V    + S    +     +  +   +++ +LG   + I ++  R+
Sbjct: 87  QLTYYEFSNSLSNPVVMGIVNFSPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E  L +R + Q+     +      +  P LE        +       NE V  + +
Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIVDLRPRLEKIET--NPQFTQIVSPNETVALVTI 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
            M +        + IP   +                ++  SE+  +   +K  +  V + 
Sbjct: 203 AMKVGEAEGMANICIPHMVIEPIMPRLSTKFWFSTSAKESSEETKEYLQKKIERTRVTVK 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + T+++ + L++G V+    R+     +    K  +    GR      ++IT  
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322

Query: 304 INFDQ 308
              + 
Sbjct: 323 EEGED 327


>gi|283832660|ref|ZP_06352401.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC
           29220]
 gi|291072334|gb|EFE10443.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC
           29220]
          Length = 334

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 96/307 (31%), Gaps = 10/307 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G +   +  P  P    R+       +   +    +   + +         +    DI
Sbjct: 26  ISGIAKESDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDI 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  + +   +     +       +   L        +  S +LV   ++NL G       
Sbjct: 80  TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++  R +       +                  +     N     N+ 
Sbjct: 140 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDI 198

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLN 239
           V     ++ I N+   F + +P   +     + ++   + S N+ ++  +   R+     
Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 258

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +          L  ++ LK G V+P         I   +G  + + + G V   Y +R
Sbjct: 259 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 316

Query: 300 ITDRINF 306
           +   IN 
Sbjct: 317 VEHLINP 323


>gi|285018173|ref|YP_003375884.1| flagellar motor switch protein [Xanthomonas albilineans GPE PC73]
 gi|283473391|emb|CBA15896.1| probable flagellar motor switch protein [Xanthomonas albilineans]
          Length = 335

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 91/299 (30%), Gaps = 11/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                      R+                +   + +         +    D+S       
Sbjct: 33  EARQYDFSSQDRIIRG------RMPTLEMVNERFARLCRIGLFNLIRRSADLSVRGIDLV 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF+  +HS       +            I     LV T+++N  G       ++  R  +
Sbjct: 87  KFNDYMHSLYVPSNLNLIKFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYPTRIEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++ +  + Q  A L++  +         E                 E+V     ++
Sbjct: 147 PTEMRVIQLMLKQTFADLHEAWAPVMNVE--FEYLNSEVNPHFANIVTPREYVVVSRFHV 204

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            +E       + +P   L     +  +  Q+   ++ E        + Y   V I + + 
Sbjct: 205 ELEGGGGEIHVTLPYSMLEPIRELLDAGIQSDRVDRDESWNIMLREQLYGSEVTISSVLA 264

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            K+ +L+++  L+IG ++P    ++    L      +++ E G       ++IT     
Sbjct: 265 QKEMSLRELTRLRIGDILPIDLPKQVP--LCVENIPVFTGEFGVSQGQNAVKITATHPP 321


>gi|238755314|ref|ZP_04616657.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473]
 gi|238706450|gb|EEP98824.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473]
          Length = 334

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 87/301 (28%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +        +   + +         +    DI+    +
Sbjct: 31  DSDVKPYDPTTQRRVV------RERLHALEIINERFARHFRMGLFNLLRRSPDITVGPIK 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L             +LV   ++NL G       ++  R 
Sbjct: 85  IQPYHEFARNLPVPTNLNLVHLKPLRGTALFVFEPSLVFIAVDNLFGGDGRFPTKVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +               +          I     N     N+ V T   
Sbjct: 145 FTHTEQRVITRMLRLALDAYRDAWGAIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I  ++  F + IP   +     +  +   + S  +  +  +   ++     + +   
Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSNWRETLVKQVQHSELELVAN 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ LK G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 264 FAEIPLRLSQILKLKPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32]
 gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32]
          Length = 347

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 93/304 (30%), Gaps = 11/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++   NT         R+                +   + + +       +    ++S  
Sbjct: 28  ETESDNTVNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSIN 81

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             Q  KF    ++       +            I     LV  L+EN  G       ++ 
Sbjct: 82  GVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIE 141

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++ +  +  +     +  S         E                 E +  
Sbjct: 142 GREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVV 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
            + ++ ++     F +++P   +     +  +  Q+               +   + VN 
Sbjct: 200 SSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALRDEIMDVPVNF 259

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +  +  +L+D++ L+ G VIP        A +       Y  ++GR G+   ++I++
Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYRVKMGRSGEKLAVQISE 317

Query: 303 RINF 306
           +I  
Sbjct: 318 KIER 321


>gi|218549270|ref|YP_002383061.1| flagellar motor switch protein FliM [Escherichia fergusonii ATCC
           35469]
 gi|218356811|emb|CAQ89439.1| flagellar motor switching and energizing component [Escherichia
           fergusonii ATCC 35469]
 gi|324114212|gb|EGC08185.1| flagellar motor switch protein FliM [Escherichia fergusonii B253]
 gi|325497687|gb|EGC95546.1| flagellar motor switch protein FliM [Escherichia fergusonii ECD227]
          Length = 334

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 94/307 (30%), Gaps = 10/307 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G +   +  P  P    R+       +   +    +   + +         +    DI
Sbjct: 26  ISGITNESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDI 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  + +   +     +       +   L        +  S  LV   ++NL G       
Sbjct: 80  TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPALVFIAVDNLFGGDGRFPT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++  R +                          +     N     N+ 
Sbjct: 140 KVEGREFTHTEQRVINRMLKLALEGYRDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDI 198

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLN 239
           V     ++ I N+   F + +P   +     + ++   + S ++ ++  +   R+     
Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRNNLVRQVQHSQ 258

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +          L  ++ LK G V+P         I   +G  + + + G +   Y +R
Sbjct: 259 LELVANFAEISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALR 316

Query: 300 ITDRINF 306
           I   IN 
Sbjct: 317 IEHLINP 323


>gi|293607830|ref|ZP_06690150.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC
           43553]
 gi|292813773|gb|EFF72934.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC
           43553]
          Length = 335

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 96/304 (31%), Gaps = 12/304 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
                       R+       +   +    +   + + +  +    M    DI+  S + 
Sbjct: 34  DGARAYDLSSPERVV------RRRMQTLELINERFARHMRNVLLNFMRRSADITVGSIKI 87

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            K++    +       +   +             NLV  ++++L G       ++  R  
Sbjct: 88  QKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDF 147

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +T E+++ +R +        +                     K  +   +NE V   + +
Sbjct: 148 TTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEVVVVTSFH 205

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTR 245
           +          + +P   +     +      ++  E   +      +R+    ++++   
Sbjct: 206 IEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWSQQLSRQVRSADIDVVAE 265

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                +++++++ LK+G V+P         I + +G  +  C  G     Y +R+ +   
Sbjct: 266 FARIPSSIRELMHLKVGDVLPVDVP--ETIIANVDGVPLMECGYGVFNGQYALRVQNMFT 323

Query: 306 FDQK 309
           +D  
Sbjct: 324 YDTD 327


>gi|312792659|ref|YP_004025582.1| flagellar motor switch protein flim [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179799|gb|ADQ39969.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 329

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 97/305 (31%), Gaps = 13/305 (4%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            KN         ++        K   +    +   Y + +       +   V +   S +
Sbjct: 33  EKNIRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +    +S     V    + S    +     +  L   +++ +LG   + I ++  R+
Sbjct: 87  QLTYYEFSNSLSNPVVMGVVNFSPLKGSIVFEMAPELAFAMIDRVLGGFGKGIDKV--RT 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E  L +R + Q+     +         P +E        +       NE V  + +
Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIIHIRPRIEKIET--NPQFTQIVSPNETVALVTI 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
            M +        + +P   +                ++  SE+  +   +K  +  V + 
Sbjct: 203 AMKVGEAEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + T+++ + L++G V+    R+     +    K  +    GR      ++IT  
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322

Query: 304 INFDQ 308
              + 
Sbjct: 323 EEGED 327


>gi|308068664|ref|YP_003870269.1| flagellar motor switch protein fliM [Paenibacillus polymyxa E681]
 gi|305857943|gb|ADM69731.1| Flagellar motor switch protein fliM [Paenibacillus polymyxa E681]
          Length = 331

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 106/316 (33%), Gaps = 13/316 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   + ++L   F  ++   V I
Sbjct: 26  LKKEDTQKKVRAYDFKRALRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +    +   +   I S  +  + +            +    N+   +L+ LLG +     
Sbjct: 80  NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRLLGGTGSAPS 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++   +L+ +E  + +R  ++    L +   T  +  P LE        +       NE 
Sbjct: 140 KVA--ALTEIETTIMERIFSRTFDSLQEAWKTVLDIEPRLEAMET--NPQFMQIVSPNET 195

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           +  I+++  I +      L IP   L              ++ ++++ + ID    +  +
Sbjct: 196 IALISLSTKIGDTTGMINLCIPHVVLEPIMARLSTHQWFTSEKKSRAPEEIDALRLRVTK 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + I   +   +  + + + L +G VI      K    +    K  +    G V     
Sbjct: 256 AELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGLSIRVGEKLKFMGSPGMVRDRVA 315

Query: 298 IRITDRINFDQKSLKN 313
           ++I + +N   + +  
Sbjct: 316 VQIDEIVNEGVEEIDE 331


>gi|114562367|ref|YP_749880.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB
           400]
 gi|114333660|gb|ABI71042.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB
           400]
          Length = 342

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + + L       M    ++S    Q  
Sbjct: 31  DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +    S       I     LV  L++N  G       ++  R  +
Sbjct: 85  KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  +  I     +  +   +     E                 E V   + ++
Sbjct: 145 PTERRIVQLLLKIIFEDYKEAWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVINSFHI 202

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++     F + +P   +     +  +  Q+  ++           +   + V  D  + 
Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALRDEIMDVQVGFDVNVV 262

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             + TL+DV+  K G +IP         ++   G   Y C++G+   N  ++I+++I   
Sbjct: 263 EHEVTLRDVMGFKAGDIIPIDLP--EHIMMRIEGLPTYRCKMGKSRDNLALKISEKIPRP 320

Query: 308 Q 308
           +
Sbjct: 321 E 321


>gi|271500079|ref|YP_003333104.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586]
 gi|270343634|gb|ACZ76399.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586]
          Length = 338

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 99/316 (31%), Gaps = 16/316 (5%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
               +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 32  QKDGDVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 85

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L           S +LV   ++NL G       ++  
Sbjct: 86  IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 145

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +       +   +   +          +     N     N+ V T 
Sbjct: 146 REFTHTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIVVTT 204

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I  +   F + IP   +     +  +   + S+ + +   +  A++     + + 
Sbjct: 205 PFHLEIGTLTGEFSICIPFSMIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELV 264

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  V+ LK G ++P         +   +G  + +C+ G +   Y +R+   
Sbjct: 265 ANFVDIPVRLSKVLKLKPGDILPIDKP--ERLVAHVDGVPVLTCQYGTLDGQYALRVEHL 322

Query: 304 INF------DQKSLKN 313
           IN       D++ L  
Sbjct: 323 INPILNSLNDEEPLNE 338


>gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus
           C3-41]
 gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
          Length = 331

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 101/285 (35%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V I+  S     F   + S     + +   
Sbjct: 49  SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + N+  ++L+ ++G S  +   + N  L+ +E K+      +    L 
Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRIMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +      E  P L         +       NE V  I++N  I   +    + IP   L 
Sbjct: 167 EAWENVAEIDPILV--ELEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q  ++  S +       +  Q  + +   + L   T++D +T++IG V
Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQIGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    +     +L       ++ + G+ GK   I+I D +    +
Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329


>gi|222530127|ref|YP_002574009.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456974|gb|ACM61236.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 329

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 98/305 (32%), Gaps = 13/305 (4%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            KN         ++        K   +    +   Y + +       +   V +   S +
Sbjct: 33  EKNVRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDILSVE 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +    +S     V    + S    +     +  +   +++ +LG   + I ++  R+
Sbjct: 87  QLTYYEFSNSLSNPVVMGIVNFSPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E  L +R + Q+     +      +  P LE        +       NE V  + +
Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIVDLRPRLEKIET--NPQFTQIVSPNETVALVTI 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
            M +        + +P   +                ++  SE+  +   +K  +  V + 
Sbjct: 203 AMKVGEAEGMANICLPHMVIEPIMPRLSTKFWFSTSAKESSEETKEYLQKKIERTRVTVK 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + T+++ + L++G V+    R+     +    K  +    GR      ++IT  
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322

Query: 304 INFDQ 308
              + 
Sbjct: 323 EEGED 327


>gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9]
 gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium
           profundum SS9]
          Length = 348

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 92/303 (30%), Gaps = 11/303 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
               +        R+                +   + + +       +    ++S    Q
Sbjct: 30  ETGITSFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 83

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF    ++       +            I     LV  L+EN  G       ++  R 
Sbjct: 84  MIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGRE 143

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +  +  +     +  S         E                 E +   + 
Sbjct: 144 FTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSSF 201

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ ++     F +++P   +     +  +  Q+   ++          +   + VN+  +
Sbjct: 202 HIELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAK 261

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L+D++ L+ G +IP        A +       Y  ++G+ G N  ++IT ++ 
Sbjct: 262 LLDVDLSLRDLMELQAGDIIPIDVP--ESATVFVEDLPTYRAKMGKSGDNIALKITQKLK 319

Query: 306 FDQ 308
              
Sbjct: 320 RPD 322


>gi|146296292|ref|YP_001180063.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409868|gb|ABP66872.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 329

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 99/293 (33%), Gaps = 8/293 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +    +   Y + +       +   V +   S +   +    +S   
Sbjct: 40  DFKRPSKFAKDHLRTLQIIFENYSRIVTTFLSGYLRTVVQMDVISVEQLTYYEFSNSLSN 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             V    + +    +     S  +   +++ +LG   + I ++  R+ + +E  L +R +
Sbjct: 100 PVVMGIVNFAPLKGSIVFEMSPEIAFAMIDRVLGGFGKGIDKI--RTFTEIELALIERLL 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
            Q+     +      +  P LE        +       NE V  + ++M +  V     +
Sbjct: 158 QQLINYFQEAWENIVDLHPKLEKIET--NPQFTQIVSPNETVALVTIDMKVGEVEGMVNI 215

Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +P   +                ++  SE+  +   RK  +  V I   +   K T+++ 
Sbjct: 216 CLPHMVIEPIMPRLSTKYWFSTSAKETSEETKEYLQRKIEKTKVTIRAILGRTKITVREF 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           + L++G VI    R+     +    K  +    GR      I++T R+  + +
Sbjct: 276 LELQVGDVIRLDRRKNQEIEVFVGDKLKFYGVPGRKEGRVAIKVT-RVEKEDE 327


>gi|281601385|gb|ADA74369.1| Flagellar motor switch protein FliM [Shigella flexneri 2002017]
          Length = 349

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 45  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 98

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 99  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 217

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335

Query: 304 INF 306
           IN 
Sbjct: 336 INP 338


>gi|227328351|ref|ZP_03832375.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 337

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 96/308 (31%), Gaps = 10/308 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 33  DGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIK 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           S +LV   ++NL G       ++  R 
Sbjct: 87  IQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ KR +        +  +   +          +     N     N+ V T   
Sbjct: 147 FTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTPF 205

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I ++   F + IP   +     +  +   + S  + +   D  A++     + +   
Sbjct: 206 HVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVAS 265

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ L+ G V+P         +   +G  + + + G +   Y +R+   IN
Sbjct: 266 FVDIPLRLSKILKLQPGDVLPIDKP--DKIVAHVDGVPVLTSQYGTLNGQYALRVEHLIN 323

Query: 306 FDQKSLKN 313
               SL N
Sbjct: 324 PILNSLDN 331


>gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
           YK9]
 gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
           YK9]
          Length = 333

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 39/312 (12%), Positives = 103/312 (33%), Gaps = 13/312 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   + ++L   F  ++   V I
Sbjct: 27  LKKEDTQKKVRAYDFKRAVRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S    +   +   I S  +  + +            +    N+   +L+ LLG       
Sbjct: 81  SVVDVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVHPNVAYAMLDRLLGGQGTAPS 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++   +L+ +E  + +R  ++    L +   T  + SP LE        +       NE 
Sbjct: 141 KMN--ALTEIEMTVLERIFSRAFESLQEAWKTVIDISPKLEALET--NPQFMQIVSPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           +  I+++  I +      L IP   +              ++ +++S + ++   ++  +
Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVIEPIMPKLSVHHWFVSQKKSRSPEEVEVLEQRVNR 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + I   +      + + + L  G VI           +    K  +    G +     
Sbjct: 257 AQLPIAVELGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNKIKFIGSPGSIKDRVA 316

Query: 298 IRITDRINFDQK 309
           +++ + ++   +
Sbjct: 317 VQVDEIVSEGVE 328


>gi|160876170|ref|YP_001555486.1| flagellar motor switch protein FliM [Shewanella baltica OS195]
 gi|160861692|gb|ABX50226.1| flagellar motor switch protein FliM [Shewanella baltica OS195]
 gi|315268366|gb|ADT95219.1| flagellar motor switch protein FliM [Shewanella baltica OS678]
          Length = 342

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 11/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           ++ ++          R+                +   + + L       M    ++S   
Sbjct: 27  AVGEDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 80

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF   +H+       +    S       I     LV  L++N  G       ++  
Sbjct: 81  VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 140

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +  +  I        +   +     +                 E V   
Sbjct: 141 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 198

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
           + ++ ++     F + +P   +     +  +  Q+  ++           +   + V  D
Sbjct: 199 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 258

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             I   + TLKDV+  K G +IP         ++       Y C++GR   N  ++I ++
Sbjct: 259 ANIVEHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIHEK 316

Query: 304 INFDQ 308
           I   +
Sbjct: 317 IPRPE 321


>gi|157145261|ref|YP_001452580.1| flagellar motor switch protein FliM [Citrobacter koseri ATCC
           BAA-895]
 gi|157082466|gb|ABV12144.1| hypothetical protein CKO_00998 [Citrobacter koseri ATCC BAA-895]
          Length = 334

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 94/305 (30%), Gaps = 10/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G     +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GGVGDNDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  D   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ LK G V+P         I   +G  + + + G V   Y +R+ 
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318

Query: 302 DRINF 306
             IN 
Sbjct: 319 HLINP 323


>gi|16078694|ref|NP_389513.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309509|ref|ZP_03591356.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313833|ref|ZP_03595638.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318756|ref|ZP_03600050.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323028|ref|ZP_03604322.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296330846|ref|ZP_06873321.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674364|ref|YP_003866036.1| flagellar motor switching and energizing protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|321315398|ref|YP_004207685.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5]
 gi|120344|sp|P23453|FLIM_BACSU RecName: Full=Flagellar motor switch protein FliM
 gi|142922|gb|AAA22446.1| flagellar switch protein [Bacillus subtilis]
 gi|2634003|emb|CAB13504.1| flagellar motor switching and energizing component [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|291484184|dbj|BAI85259.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. natto
           BEST195]
 gi|296151851|gb|EFG92725.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412608|gb|ADM37727.1| flagellar motor switching and energizing component [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320021672|gb|ADV96658.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5]
          Length = 332

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 96/286 (33%), Gaps = 8/286 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   + IS +S     +   I S     + +   
Sbjct: 49  SKDQIRSLTRIHDNFARLLTTHFSAQLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFD 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +  +  +  T+++ ++G    +  ++ +  L+ +E K+             
Sbjct: 109 VHPMEGRIMMEVNPTIAYTMMDRVMGGIGISHNKVDS--LTEIETKIISNLFENALGNYK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +   +  +  P  E        +       NE V  I++N  I  ++    L IP   L 
Sbjct: 167 EAWQSIADIEP--EMTEFEVNPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPHIVLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q+       +      ++     + +   +   + T+++ ++L++G  
Sbjct: 225 PLIPKLSVHYWMQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDC 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309
           I           +    K  +  + GRV +   ++I D  I  +Q 
Sbjct: 285 ITLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQAVQILDHDIRGEQD 330


>gi|17548599|ref|NP_521939.1| flagellar motor switch protein FliM [Ralstonia solanacearum
           GMI1000]
 gi|17430847|emb|CAD17529.1| probable flagellar motor switch protein flim [Ralstonia
           solanacearum GMI1000]
          Length = 335

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 90/276 (32%), Gaps = 5/276 (1%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + +         +  + +IS    +  K+S  I +       +   +  
Sbjct: 50  RMPTLEIINERFARNWRMGLFNFLRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                      NL+  ++++L G       ++  R  + VE+++ +R +  +     +  
Sbjct: 110 LRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAW 169

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                     E      + +       NE V +   +M + +      + +P   +    
Sbjct: 170 QPIYPIE--FEPLRMEMHTEFANVATPNEVVVSTRFSMELGSNGGDVHVCMPYTMIEPIR 227

Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  S+ Q ++    +  +   +++     V +   +      + D++ +K+G V+P   
Sbjct: 228 DLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL 287

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                     +G  +  C  G     Y +R+   +N
Sbjct: 288 --DDSVTARVDGVPVMECAYGTFNGQYALRVNRMLN 321


>gi|260776477|ref|ZP_05885372.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607700|gb|EEX33965.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 351

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 93/307 (30%), Gaps = 11/307 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +          R+                +   + + +       +    ++S 
Sbjct: 29  GAAADPSAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSI 82

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              Q  KF    ++       +            I     LV  L+EN  G       ++
Sbjct: 83  NGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARI 142

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++ +  +  +     +  S         E                 E + 
Sbjct: 143 EGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
             + ++ ++     F +++P   +     +  +  Q+               +   + VN
Sbjct: 201 VSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVN 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
               +  +  +L+D++ L+ G +IP    E   A +       +  ++GR G+   ++++
Sbjct: 261 FRVNLLEQDISLRDLMELQPGDIIPITMPEN--ATMFVEELPTFRVKMGRSGEQLAVQVS 318

Query: 302 DRINFDQ 308
           ++I    
Sbjct: 319 EKIKRPD 325


>gi|311279113|ref|YP_003941344.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1]
 gi|308748308|gb|ADO48060.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1]
          Length = 334

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 93/305 (30%), Gaps = 10/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G     +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GAGGETDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L           S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALEAYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  +   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRSEDQNWRENLVRQVQHSELE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ L+ G V+P         I   +G  + + + G +   Y +R+ 
Sbjct: 261 LVANFADISLRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVE 318

Query: 302 DRINF 306
             IN 
Sbjct: 319 HLINP 323


>gi|238927453|ref|ZP_04659213.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC
           43531]
 gi|238884735|gb|EEQ48373.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC
           43531]
          Length = 333

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 94/286 (32%), Gaps = 8/286 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    L   + + L       +   +DI  +S +   +   + S     V    +
Sbjct: 49  SKDQIRTLFMLHESFSRLLNTYLSASLRTMIDIDVSSVEQVTYQEFVQSMANPSVIGILA 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L        I  +  +    ++ + G       +   R L+ +E  + +R I   +    
Sbjct: 109 LPPLKGKIIIEINPGIAFAYIDRIFGGEGRPAVKT--RVLTDIEMAVMRRFIELATNYFR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   E  PN E        +       N+ V  I +++ + +V     + IP   L 
Sbjct: 167 EAWSNVVEFRPNFETMET--NSQFAQIVPPNDMVVLITIHIKMGDVDGMMNICIPYLVLE 224

Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
                  +S     +     S + ++   RK  + +V    ++   + T+ + +TL  G 
Sbjct: 225 PVMSKLTTSFWVAASMDRESSPEQVEELQRKIERTSVPFTVQLGEIEMTINEFLTLGFGD 284

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+      K   +        +    G  GK   ++I+  I  +  
Sbjct: 285 VLQLDTLTKDELVCYVGSNPKFLARPGTAGKRMAVQISGVIEGEDN 330


>gi|310641555|ref|YP_003946313.1| heat shock protein hslvu, atpase subunit hslu [Paenibacillus
           polymyxa SC2]
 gi|309246505|gb|ADO56072.1| Heat shock protein HslVU, ATPase subunit HslU [Paenibacillus
           polymyxa SC2]
          Length = 332

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 106/316 (33%), Gaps = 13/316 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   + ++L   F  ++   V I
Sbjct: 27  LKKEETQKKVRAYDFKRALRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +    +   +   I S  +  + +            +    N+   +L+ LLG +     
Sbjct: 81  NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRLLGGTGSAPT 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++   +L+ +E  + +R  ++    L +   T  +  P LE        +       NE 
Sbjct: 141 KVT--ALTEIETTIMERIFSRTFDSLQEAWKTVLDIEPRLEAMET--NPQFMQIVSPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           +  I+++  I +      L IP   L              ++ ++++ + ID    +  +
Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVLEPIMARLSTHQWFTSEKKSRAPEEIDALRLRVTK 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + I   +   +  + + + L +G VI      K    +    K  +    G V     
Sbjct: 257 AELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGLSIRVGEKLKFMGSPGMVRDRVA 316

Query: 298 IRITDRINFDQKSLKN 313
           ++I + +N   + +  
Sbjct: 317 VQIDEIVNEGVEEIDE 332


>gi|163750543|ref|ZP_02157781.1| flagellar motor switch protein [Shewanella benthica KT99]
 gi|161329698|gb|EDQ00687.1| flagellar motor switch protein [Shewanella benthica KT99]
          Length = 348

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 11/302 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
                       R+                +   + + L       M    ++S    Q 
Sbjct: 36  SEARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQM 89

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF   +H+       +    S       I     LV  L++N  G       ++  R  
Sbjct: 90  IKFGEYVHTLFVPTSLNMVKFSPLKGTGLITMEARLVFILVDNFFGGDGRFHAKIEGREF 149

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++ +  +  I     +  +   +     E                 E V   + +
Sbjct: 150 TPTERRIVQLLLKIIFEDYKEAWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVVSSFH 207

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + ++     F + +P   +     +  +  Q+ +++  +        +   + V ID  I
Sbjct: 208 IEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDKRWSMALKDEIMDIKVGIDATI 267

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             ++  LKDV+  + G +IP         +L       Y C+LG+   N  +RI ++I  
Sbjct: 268 VDQEIALKDVMKFRAGDIIPVDLP--EHIVLRVEDLPTYRCKLGKSRDNLALRIIEKIPR 325

Query: 307 DQ 308
            +
Sbjct: 326 PK 327


>gi|83747640|ref|ZP_00944676.1| FliM [Ralstonia solanacearum UW551]
 gi|207739721|ref|YP_002258114.1| flagellar motor switch protein flim [Ralstonia solanacearum
           IPO1609]
 gi|9438185|gb|AAF87587.1|AF283286_1 flagellar motor switch [Ralstonia solanacearum]
 gi|83725692|gb|EAP72834.1| FliM [Ralstonia solanacearum UW551]
 gi|206593103|emb|CAQ60009.1| flagellar motor switch protein flim [Ralstonia solanacearum
           IPO1609]
          Length = 335

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 96/303 (31%), Gaps = 11/303 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q+        +     R+                +   + +         +  + +IS  
Sbjct: 29  QAEAAGVRTYNLGSQERIVRG------RMPTLEIINERFARNWRMGLFNFLRRNAEISVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K+S  I +       +   +             NL+  ++++L G       ++ 
Sbjct: 83  PVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + VE+++ +R +A +     +            E      + +       NE V +
Sbjct: 143 GRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIE--FEPLRMEMHTEFANVATPNEVVVS 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              +M + +      + +P   +     +  S+ Q ++    +  +   +++     V +
Sbjct: 201 TRFSMELGSNGGDVHVCMPYTMIEPIRDLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEV 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +      + D++ +K+G V+P             +G  +  C  G     Y +R+  
Sbjct: 261 VAHLANANVHVSDILNMKVGDVVPLEL--DDFVTARVDGVPVMECAYGTFNGQYALRVNR 318

Query: 303 RIN 305
            +N
Sbjct: 319 MLN 321


>gi|226313058|ref|YP_002772952.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC
           100599]
 gi|226096006|dbj|BAH44448.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC
           100599]
          Length = 331

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 94/312 (30%), Gaps = 13/312 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   +           R        K   +  + +   Y + L   F  ++   V I
Sbjct: 27  LKKEETERKVKVYDFKRALRF------SKDQIRGLTRIHENYARLLTTYFSAQLRTFVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  S     +   I S  +  + +            +  + N+  T+L+ LLG       
Sbjct: 81  TVASVDQLPYDEFIRSIPKMTILNIFEAPPLEGRMVLEVNPNIAYTMLDRLLGGQGAIPE 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++   +L+ +E  + +R   +     ++      E  P  E        +       NE 
Sbjct: 141 KMG--ALTEIETTVMERVFGKALDTFHEAWKQIIELDPYQEGLEM--NPQFMQIVSPNEI 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  I+ +  I +      L +P   L               + + + E+       +   
Sbjct: 197 VVVISFSTKIGDTTGMINLCLPHVVLEPIMTKLSGQYWFSKQKKTRDEEERLRVEERVKV 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + I   +     T+ D + L+ G VI           +       +  + G       
Sbjct: 257 AKLPIVAEMGTATITVGDFLQLQKGDVIQLDQSIDNKLKIKVGNHLKFLGQPGTHKGRVA 316

Query: 298 IRITDRINFDQK 309
           ++I + I   ++
Sbjct: 317 VQIDEVIEEGEE 328


>gi|312126831|ref|YP_003991705.1| flagellar motor switch protein flim [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776850|gb|ADQ06336.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 329

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 99/305 (32%), Gaps = 13/305 (4%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            KN         ++        K   +    +   Y + +       +   V +   S +
Sbjct: 33  EKNIRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +    +S     V    + S    +     +  +   +++ +LG   + I ++  R+
Sbjct: 87  QLTYYEFSNSLSNPVVMGIVNFSPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E  L +R + Q+     +      +  P LE        +       NE V  + +
Sbjct: 145 FTEIELVLIERLLQQLINYFQEAWENIVDLRPRLEKIET--NPQFTQIVSPNETVALVTI 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
            M +  V     + +P   +                ++  SE+  +   +K  +  V + 
Sbjct: 203 AMKVGEVEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + T+++ + L++G V+    R+     +    K  +    GR      ++IT  
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322

Query: 304 INFDQ 308
              + 
Sbjct: 323 EEGED 327


>gi|217972623|ref|YP_002357374.1| flagellar motor switch protein FliM [Shewanella baltica OS223]
 gi|217497758|gb|ACK45951.1| flagellar motor switch protein FliM [Shewanella baltica OS223]
          Length = 342

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 11/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           ++ ++          R+                +   + + L       M    ++S   
Sbjct: 27  AVGEDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 80

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF   +H+       +    S       I     LV  L++N  G       ++  
Sbjct: 81  VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 140

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +  +  I        +   +     +                 E V   
Sbjct: 141 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 198

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
           + ++ ++     F + +P   +     +  +  Q+  ++           +   + V  D
Sbjct: 199 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 258

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             I   + TLKDV+  K G +IP         ++       Y C++GR   N  ++I ++
Sbjct: 259 ANIVEHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIHEK 316

Query: 304 INFDQ 308
           I   +
Sbjct: 317 IPRPE 321


>gi|163856451|ref|YP_001630749.1| flagellar motor switch protein FliM [Bordetella petrii DSM 12804]
 gi|163260179|emb|CAP42481.1| flagellar motor switch protein FliM [Bordetella petrii]
          Length = 335

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 101/310 (32%), Gaps = 12/310 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
           R ++  +           R+       +   +    +   + + L  +    M  + DI+
Sbjct: 28  RDEADARGARAYDLSSPDRVV------RRRMQTLELINERFARQLRHLLLNFMRRNADIT 81

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             S +  K++    +       +   +             +LV  ++++L G       +
Sbjct: 82  VGSIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPSLVFLVIDSLFGGDGRYHTR 141

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +T E+++ +R +        +                     K  +   +NE V
Sbjct: 142 VEGRDFTTTEQRIIRRLLNLTLESYGKSWEAVYPIEFEYVRSEMHT--KFASITGNNEVV 199

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLN 239
              + ++          + +P   +     +      ++  E   +      +R+    +
Sbjct: 200 VVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWTHQLSRQVRSAD 259

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V++        +++++++ LK+G V+P         I + NG  +  C  G     Y +R
Sbjct: 260 VDLTAEFASIPSSIRELLRLKVGDVLPIEVP--ETVIANVNGVPLMECSYGVFNGQYALR 317

Query: 300 ITDRINFDQK 309
           + +   ++  
Sbjct: 318 VQNLFTYESD 327


>gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
           19624]
 gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
           19624]
          Length = 331

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 101/279 (36%), Gaps = 5/279 (1%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + + L       +    +IS    Q  ++S  +        F+  ++  
Sbjct: 50  RMPTMEVVNERFARNLRISLFNFIRRSPEISVGPVQVQRYSAFLRELAVPTSFNIMAVRP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
              N  I C  +L+  +++ L G   +   ++  R  S  E+++  R +  IS    +  
Sbjct: 110 LRGNGMIVCEPSLIFGVIDTLYGGIGKFQSRIEGRDFSATEQRIINRLVDVISDEYKKAW 169

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                    LE        +       +E V + +  + I  ++ +    IP  TL    
Sbjct: 170 RGIYPLE--LEYQRSEMQPQFANIATPSEIVVSSSFQLEIGEMSGTIHFCIPYATLEPIR 227

Query: 211 LIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +   S+Q  S       ++   R+    +V +   +    TT+++++ +K+G  I    
Sbjct: 228 DVLYSSTQGDSMEVDRRWVNVLTREIQAADVTLVAELARANTTVEELLAMKVGDFIELER 287

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           + +  A +S  G  ++ C+ G     Y IRI   +  + 
Sbjct: 288 QPRIEATIS--GVPVFECQYGTHNAKYAIRIERSLRGND 324


>gi|161502902|ref|YP_001570014.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864249|gb|ABX20872.1| hypothetical protein SARI_00961 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 334

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  D   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ LK G V+P         I   +G  + + + G V   Y +R+ 
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318

Query: 302 DRINF 306
             IN 
Sbjct: 319 HLINP 323


>gi|16760920|ref|NP_456537.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141388|ref|NP_804730.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213424998|ref|ZP_03357748.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213584776|ref|ZP_03366602.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213855271|ref|ZP_03383511.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829468|ref|ZP_06547080.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25298898|pir||AI0752 flagellar motor switch protein FliM [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503217|emb|CAD05724.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137015|gb|AAO68579.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 334

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  D   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ LK G V+P         I   +G  + + + G V   Y +R+ 
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318

Query: 302 DRINF 306
             IN 
Sbjct: 319 HLINP 323


>gi|302872559|ref|YP_003841195.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575418|gb|ADL43209.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 329

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 99/305 (32%), Gaps = 13/305 (4%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            KN         ++        K   +    +   Y + +       +   V +   S +
Sbjct: 33  EKNVRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTIVQMDVLSVE 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +    +S     V    + +    +     +  +   +++ +LG   + I ++  R+
Sbjct: 87  QLTYYEFSNSLSNPVVMGIVNFTPLKGSIVYEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E  L +R + Q+     +      E  P LE        +       NE +  + +
Sbjct: 145 FTEIELALIERLLQQLVNYFQEAWENIVELRPRLEKIET--NPQFTQIVSPNETIALVTI 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
            M +  V     + +P   +                ++  SE+  +   +K  +  V + 
Sbjct: 203 AMKVGEVEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + T+++ + L++G V+    R+     +    K  +    GR      ++IT  
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322

Query: 304 INFDQ 308
              + 
Sbjct: 323 EEGED 327


>gi|308173594|ref|YP_003920299.1| flagellar motor switching and energizing component [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606458|emb|CBI42829.1| flagellar motor switching and energizing component [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553474|gb|AEB23966.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens
           TA208]
 gi|328911735|gb|AEB63331.1| flagellar motor switching and energizing component [Bacillus
           amyloliquefaciens LL3]
          Length = 332

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 93/286 (32%), Gaps = 8/286 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  K+   + IS +S     +   I S     + +   
Sbjct: 49  SKDQIRSLTRIHDNFARLLTTHFSAKLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFD 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +  +  +   +L+ ++G    T  +  N  L+ +E  +             
Sbjct: 109 VHPMEGRIMMEVNPTIAYAMLDRVMGGIGITHNKADN--LTEIETNIISNLFENALGNYK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +   +  +  P  E        +       NE V  I++N  I  ++    L IP   L 
Sbjct: 167 EAWQSIADIDP--EMTEFEVNPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPHVVLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q+       +      ++     + +   +   + T+++ ++L++G  
Sbjct: 225 PIIPKLSVHYWMQSDRNEAKPEETKSLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDC 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309
           I           +    K  +  + GRV +   ++I D  I  +Q 
Sbjct: 285 ITLDKSVTDPLTVLVGNKPKFLGQAGRVNRRQAVQILDHDIRGEQD 330


>gi|229544404|ref|ZP_04433462.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1]
 gi|229324889|gb|EEN90566.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1]
          Length = 333

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 7/280 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L      ++   V IS  S     +   I S  +  + +   
Sbjct: 48  SKDQIRSLTRIHENFSRILTTFLSAQLRTYVQISVASADQIPYEEFIRSIPKMTLLTVYE 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + N+  T+++ +LG   E+I ++    L+ +EKK+  R   Q    L 
Sbjct: 108 VPPLDGNIIMEINPNIAYTMMDRVLGGYGESINKIDK--LTEIEKKIMTRIFDQTIDQLK 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   E +P L         +       NE V  I++N TI + +    L +PQ  L 
Sbjct: 166 EAWSEIIEINPFL--TELEVNPQFLQMISPNETVVVISLNTTIGDTSGMINLCLPQVVLD 223

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q+  +    + I        +  V +   +      ++D + L+IG  
Sbjct: 224 PMMPKLSGHYWMQHAGKEPDPNNIRLLEEGIKEAKVPLTAELGTATIKIEDFLNLEIGDC 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           I      +   ++  +    +  + G+ G    ++I D I
Sbjct: 284 IRLNQTIEEPLVVKVDKIPKFIGQPGKQGTKMAVQILDII 323


>gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36]
 gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36]
          Length = 350

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 93/294 (31%), Gaps = 11/294 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       M    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSINGVQMLKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
            +H+       +            +     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHAKIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  +    ++  +   ++    E                 E V   + ++ ++ 
Sbjct: 151 RIIQMLLKIVFEDYHEAWAPVMDAE--FEYLDSEVNPAMANIVSPTEVVVVSSFHIELDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F + +P   L     +  +  Q+  E+  E        +   + V + T++   + 
Sbjct: 209 GGGDFHITMPYSMLEPIRELLDAGVQSDKEDTDERWSSALQEEILDVPVELSTKLLETEL 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           T+  ++ L++G +IP          +       Y  +LGR   N  ++I+ ++ 
Sbjct: 269 TIGQIMELRVGDIIPIEMP--EELTVFIEDLPSYKAKLGRNKDNVAVKISRKLK 320


>gi|260222423|emb|CBA31972.1| Flagellar motor switch protein fliM [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 334

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 96/305 (31%), Gaps = 11/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           + H      +     R+                +   + + L       +    +IS   
Sbjct: 30  AEHGEVRAYNISSQERIVRG------RMPTMEIVNERFARNLRVGLFNFIRRSPEISVGP 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
               ++S  +        F+  ++     +  + C   LV  +++ L G   +   ++  
Sbjct: 84  VVVQRYSAFLRELAVPTNFNIVAIRPLRGSGLVVCEPALVFGVIDTLYGGIGKFQTRIEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  S  E+++  R +  I+    +           LE        +       +E V + 
Sbjct: 144 RDFSATEQRVINRLVDVITTEYKKAWKGIYPLE--LEYQRSEMQPQFANIATPSEIVIST 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
           +  + I ++  +     P  TL     +   S+Q  S       ++   R+     V I 
Sbjct: 202 SFQLEIGDITGAIHFSFPYSTLEPIRDVLYSSTQGDSIEVDRRWVNVLTREIQAAEVTIV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +     T++ ++ +K G  I            + +G  I+ C+ G     Y IRI   
Sbjct: 262 AELARADATVEQLLGMKKGDFIELDRAP--RIQATVDGVPIFECQYGTHNSKYAIRIEKA 319

Query: 304 INFDQ 308
           +  + 
Sbjct: 320 LRGND 324


>gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01]
 gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01]
          Length = 347

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 93/304 (30%), Gaps = 11/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++ + +          R+                +   + + +       +    ++S  
Sbjct: 28  ETENDSAVNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSIN 81

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             Q  KF    ++       +            I     LV  L+EN  G       ++ 
Sbjct: 82  GVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIE 141

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++ +  +  +     +  S         E                 E +  
Sbjct: 142 GREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVV 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
            + ++ ++     F +++P   +     +  +  Q+               +   + VN 
Sbjct: 200 SSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNF 259

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +  +  +L+D++ L+ G VIP        A +       Y  ++GR G+   ++I++
Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYRVKMGRSGEKLAVQISE 317

Query: 303 RINF 306
           +I  
Sbjct: 318 KIQR 321


>gi|126175121|ref|YP_001051270.1| flagellar motor switch protein FliM [Shewanella baltica OS155]
 gi|153001445|ref|YP_001367126.1| flagellar motor switch protein FliM [Shewanella baltica OS185]
 gi|304409952|ref|ZP_07391571.1| flagellar motor switch protein FliM [Shewanella baltica OS183]
 gi|307302335|ref|ZP_07582093.1| flagellar motor switch protein FliM [Shewanella baltica BA175]
 gi|125998326|gb|ABN62401.1| flagellar motor switch protein FliM [Shewanella baltica OS155]
 gi|151366063|gb|ABS09063.1| flagellar motor switch protein FliM [Shewanella baltica OS185]
 gi|304351361|gb|EFM15760.1| flagellar motor switch protein FliM [Shewanella baltica OS183]
 gi|306914373|gb|EFN44794.1| flagellar motor switch protein FliM [Shewanella baltica BA175]
          Length = 342

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 11/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           ++ ++          R+                +   + + L       M    ++S   
Sbjct: 27  AVGEDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 80

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF   +H+       +    S       I     LV  L++N  G       ++  
Sbjct: 81  VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 140

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +  +  I        +   +     +                 E V   
Sbjct: 141 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 198

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
           + ++ ++     F + +P   +     +  +  Q+  ++           +   + V  D
Sbjct: 199 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 258

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             I   + TLKDV+  K G +IP         ++       Y C++GR   N  ++I ++
Sbjct: 259 ANIVEHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEK 316

Query: 304 INFDQ 308
           I   +
Sbjct: 317 IPRPE 321


>gi|323174676|gb|EFZ60296.1| flagellar motor switch protein FliM [Escherichia coli LT-68]
          Length = 334

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQTLEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|16765314|ref|NP_460929.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62180551|ref|YP_216968.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161613455|ref|YP_001587420.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552791|ref|ZP_02346542.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167993551|ref|ZP_02574645.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234149|ref|ZP_02659207.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239216|ref|ZP_02664274.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244827|ref|ZP_02669759.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259737|ref|ZP_02681710.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168462482|ref|ZP_02696413.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823019|ref|ZP_02835019.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444199|ref|YP_002041241.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451006|ref|YP_002046027.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194737897|ref|YP_002115010.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249640|ref|YP_002146047.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265099|ref|ZP_03165173.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198245200|ref|YP_002215110.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389660|ref|ZP_03216271.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204931068|ref|ZP_03221894.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205352330|ref|YP_002226131.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856511|ref|YP_002243162.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224583525|ref|YP_002637323.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912451|ref|ZP_04656288.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|120346|sp|P26418|FLIM_SALTY RecName: Full=Flagellar motor switch protein FliM
 gi|154035|gb|AAA27104.1| fliM flagellar switch protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16420511|gb|AAL20888.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62128184|gb|AAX65887.1| flagellar biosynthesis, component of motor switch and energizing
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362819|gb|ABX66587.1| hypothetical protein SPAB_01172 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402862|gb|ACF63084.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409310|gb|ACF69529.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194713399|gb|ACF92620.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195634275|gb|EDX52627.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213343|gb|ACH50740.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197243354|gb|EDY25974.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288083|gb|EDY27470.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939716|gb|ACH77049.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602105|gb|EDZ00651.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320112|gb|EDZ05317.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205272111|emb|CAR36964.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322661|gb|EDZ10500.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205328413|gb|EDZ15177.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331867|gb|EDZ18631.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336350|gb|EDZ23114.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340670|gb|EDZ27434.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350615|gb|EDZ37246.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708314|emb|CAR32617.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224468052|gb|ACN45882.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247142|emb|CBG24965.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993965|gb|ACY88850.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158490|emb|CBW18000.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912966|dbj|BAJ36940.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085405|emb|CBY95186.1| Flagellar motor switch protein fliM [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224621|gb|EFX49684.1| Flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322616969|gb|EFY13877.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618208|gb|EFY15100.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625879|gb|EFY22698.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626331|gb|EFY23141.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632746|gb|EFY29491.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639088|gb|EFY35781.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640404|gb|EFY37060.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647235|gb|EFY43734.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649917|gb|EFY46338.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655525|gb|EFY51833.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660303|gb|EFY56541.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662984|gb|EFY59191.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668169|gb|EFY64328.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674072|gb|EFY70166.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675576|gb|EFY71650.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683013|gb|EFY79029.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686707|gb|EFY82685.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715027|gb|EFZ06598.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130255|gb|ADX17685.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195405|gb|EFZ80585.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198067|gb|EFZ83184.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204461|gb|EFZ89467.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207551|gb|EFZ92499.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211010|gb|EFZ95870.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217536|gb|EGA02255.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220731|gb|EGA05175.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226682|gb|EGA10879.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231558|gb|EGA15671.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236001|gb|EGA20080.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240571|gb|EGA24614.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245463|gb|EGA29463.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247581|gb|EGA31532.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253956|gb|EGA37780.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255516|gb|EGA39277.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262114|gb|EGA45677.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266237|gb|EGA49727.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270654|gb|EGA54095.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326622858|gb|EGE29203.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326627380|gb|EGE33723.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988865|gb|AEF07848.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 334

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  D   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ LK G V+P         I   +G  + + + G V   Y +R+ 
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318

Query: 302 DRINF 306
             IN 
Sbjct: 319 HLINP 323


>gi|260598454|ref|YP_003211025.1| flagellar motor switch protein FliM [Cronobacter turicensis z3032]
 gi|260217631|emb|CBA31927.1| Flagellar motor switch protein fliM [Cronobacter turicensis z3032]
          Length = 334

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 31  DGDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           S +LV   ++NL G       ++  R 
Sbjct: 85  IQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +       +                  +     N     N+ V     
Sbjct: 145 FTHTEQRVINRMLKLALEAYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I N+   F + +P   +     + ++   + S  + +   D   R+     + +   
Sbjct: 204 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQHWRDNLVRQVQHSELELIAN 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ LK G V+P         ++  +G  + + + G V   Y +R+   IN
Sbjct: 264 FAEIPLRLSKILKLKPGDVLPIEKP--DRILVHVDGVPVLTSQYGTVSGQYALRVEHLIN 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|77165630|ref|YP_344155.1| flagellar motor switch protein FliM [Nitrosococcus oceani ATCC
           19707]
 gi|254434449|ref|ZP_05047957.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27]
 gi|76883944|gb|ABA58625.1| Flagellar motor switch protein FliM [Nitrosococcus oceani ATCC
           19707]
 gi|207090782|gb|EDZ68053.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27]
          Length = 336

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 94/307 (30%), Gaps = 11/307 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            K   P       R+       +    +   +   + +         +    +++    Q
Sbjct: 34  EKTIRPYDFSSEDRI------ARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQ 87

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KFS  +H+       +   +              LV  L+E   G S +   +L NR 
Sbjct: 88  VLKFSEYLHTLFMPTSLNLVQIDPLRGTGLFVFDPKLVFMLVEQYFGGSGQFYNRLENRE 147

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E  + +  + +  A L Q        +   E        +  T   S+E V     
Sbjct: 148 FTPTEVHIIQLVLERTFADLKQAWEPVLAVN--FEYLQTELNPRLATIASSSEMVVVSTF 205

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245
           ++  E     F + +P   L     +  + +                +      V +   
Sbjct: 206 HVEFEGGGGEFHIALPYTLLEPVRELLATGKKDDFAQADGGWNQALRKNVSDAEVELSCT 265

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +L +++ LK G ++P      +     A+G  ++    G    +  +++ +R+ 
Sbjct: 266 LTEIQLSLGEILALKSGDILPIELP--STVTALADGIPVFRVRYGIHHGSRALKVVERLL 323

Query: 306 FDQKSLK 312
             +   +
Sbjct: 324 SPESFTE 330


>gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 322

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 82/296 (27%), Gaps = 9/296 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
               P       ++                +     +         +   VD+   +   
Sbjct: 33  SGVRPYDFTSQEKIVRGK------MPSLDIINERLARSFRVSLASDIRKIVDVINVNVNI 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF   + S       +   L        +     ++ TL+E   G S +   +   R  
Sbjct: 87  TKFYDFLRSVPFPSSLNIIKLEPLRGFSLVVFDAPMIFTLIEFYFGGSGKGYYKPEGREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           + +E+++  + +      + +      +  P+          +  T     + V      
Sbjct: 147 TPIEQRIIHKVVMMFLESMEEAWKPIFQIKPHFIRTEM--NPQFVTIVTPVDVVIETEFT 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + IE      ++ IP  ++         +     +      I     +     V ++  +
Sbjct: 205 LEIETRECKIMVCIPYSSVEPIKEKLYSAFLADRDEMDMKWIGRLKAQIKNAPVQVEAIL 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                  K ++ LK G ++    R      L   G   +  +LG    NY I+I  
Sbjct: 265 GKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVEGVPKFKGKLGTFKGNYAIKIIK 320


>gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
 gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
          Length = 347

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 89/295 (30%), Gaps = 11/295 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFSRHMRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            I     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  +     +  S         E                 E +   + ++ ++ 
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +   + VN    +  +  
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +L+D++ L+ G VIP        A +       Y  ++GR G+   ++I+++I  
Sbjct: 269 SLRDLMELRPGDVIPMNMP--EHATMFVEELPTYRVKMGRSGEKLAVQISEKIQR 321


>gi|239997091|ref|ZP_04717615.1| flagellar motor switch protein FliM [Alteromonas macleodii ATCC
           27126]
          Length = 352

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 91/303 (30%), Gaps = 11/303 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G     +T         R+                +   + + +       M    ++S 
Sbjct: 27  GSDSDASTLEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSI 80

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              Q  KF   IH+       +            I     LV  L++N  G       ++
Sbjct: 81  NGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKI 140

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++ +  +  I     +  +   +   + E                 E V 
Sbjct: 141 EGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVV 198

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
             + ++ ++     F + +P   L     +  +  Q+  E+           +   + V 
Sbjct: 199 ISSFHIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVA 258

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           + T +      L+DV+  K G +IP          +       +  +LGR   N  ++I 
Sbjct: 259 LTTHMLDVDVPLRDVMEFKPGDIIPVEMP--ETITVLIEDLPTFRAKLGRSRDNLALKIV 316

Query: 302 DRI 304
           ++I
Sbjct: 317 EKI 319


>gi|311105953|ref|YP_003978806.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8]
 gi|310760642|gb|ADP16091.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8]
          Length = 335

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 100/311 (32%), Gaps = 9/311 (2%)

Query: 4   QSIHKNTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
                 T+       AR   L+      +   +    +   + + +  +    M    DI
Sbjct: 21  GESDSKTTATDQSAGARAYDLSSPERVVRRRMQTLELINERFARQMRHVLLNFMRRSADI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  S +  K++    +       +   +             NLV  ++++L G       
Sbjct: 81  TVGSIKIQKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHT 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +T E+++ +R +        +                     K  +   +NE 
Sbjct: 141 RVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEV 198

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQL 238
           V   + ++          + +P   +     +      ++  E   +      +R+    
Sbjct: 199 VVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWAQQLSRQVRSA 258

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           ++++        +++++++ LK+G V+P         + S +G  +  C  G     Y +
Sbjct: 259 DIDVVAEFARIPSSIRELMRLKVGDVLPVTVP--ETIVASVDGVPLMECGYGVFNGQYAL 316

Query: 299 RITDRINFDQK 309
           R+ +    D +
Sbjct: 317 RVQNMFTHDTE 327


>gi|312135842|ref|YP_004003180.1| flagellar motor switch protein flim [Caldicellulosiruptor
           owensensis OL]
 gi|311775893|gb|ADQ05380.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           owensensis OL]
          Length = 329

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 94/292 (32%), Gaps = 7/292 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +    +   Y + +       +   V +   S +   +    +S   
Sbjct: 40  DFKRPSKFAKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVEQLTYYEFSNSLSN 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             V    + +    +     +  +   +++ +LG   + I ++  R+ + +E  L +R +
Sbjct: 100 PVVMGIVNFAPLKGSIVYEMAPEIAFAMIDRVLGGFGKGIDKI--RTFTEIELALIERLL 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
            Q+     +      +  P LE        +       NE V  + + M +        +
Sbjct: 158 QQLINYFQEAWENIIQLRPRLEKIET--NPQFTQIVSPNETVALVTIAMKVGEAEGMANI 215

Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +P   +                ++  SE+  +   +K  +  V +   +   + T+++ 
Sbjct: 216 CLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREF 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           + L++G V+    R+     +    K  +    GR      I+IT     + 
Sbjct: 276 LELQVGDVLRLDRRKNQEIEVYVGNKLKFYGVPGRKEGRVAIKITRVEEGED 327


>gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
           2876]
 gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
           2876]
          Length = 329

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 97/308 (31%), Gaps = 13/308 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +  K          A+        K   +    +   Y + L       + + V +   +
Sbjct: 32  TEEKTVKDYDFARPAKF------SKEHLRTLEIIFEHYGRLLSTNLPAYLRMPVQVEVKT 85

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            ++  +S   ++     +           N  +  ++NL   +++ LLG + + + +   
Sbjct: 86  SEAVIYSEFSNALSNPVLLGVVDFEPLDGNIVLEIASNLGFVIIDRLLGGAGKPLSK--G 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  S +E  + +R       +L +         P +E        +       +E +  +
Sbjct: 144 RDFSEIELSIIERIFNICVNLLREPWQNVLSIVPRMERIET--NSQFAQIISPSEMIAIV 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVN 241
            +++ + +      + +P   L                     +   D  +    +  + 
Sbjct: 202 TISIKLGDTEGLMNVCLPYSVLEPVMDKLNTKYWFSTMQHRDVKTYEDAISSLISKAQIP 261

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +     ++ D + L +G +I    +      +       ++   G    NY +RIT
Sbjct: 262 VKAVLGNSTISVNDFLNLNVGDIIRLDRKVDEELDVYVGNIHKFTALPGSADDNYAVRIT 321

Query: 302 DRINFDQK 309
           + +  +++
Sbjct: 322 NVLRGEEE 329


>gi|294636877|ref|ZP_06715207.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685]
 gi|291089907|gb|EFE22468.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685]
          Length = 337

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 34  DGEVRPYDPTTQRRVV------RERLQALEIVNERFARQFRMGLFNLLRRSPDITVGAVR 87

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L        +    +LV   ++NL G       ++  R 
Sbjct: 88  IQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVDGRE 147

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +               +          I     N     N+ V T   
Sbjct: 148 FTHTEQRVIQRMLRLALDAYRDAWGAIFKLEVEYVRSE-IQVKFTNITTSPNDIVVTTPF 206

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
            + +  ++  F + IP   +     + ++   + S+ + +   D  +++     + +   
Sbjct: 207 TVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVAN 266

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L DV+ L++G V+P         I + +G  + +C+ G     Y +R+   IN
Sbjct: 267 FVDIPLRLSDVLKLQVGDVLPIDRP--DRLIANVDGVPVLTCQYGCYHGQYALRVEKMIN 324

Query: 306 F 306
            
Sbjct: 325 P 325


>gi|74312485|ref|YP_310904.1| flagellar motor switch protein FliM [Shigella sonnei Ss046]
 gi|73855962|gb|AAZ88669.1| flagellar motor switch protein FliM [Shigella sonnei Ss046]
 gi|323168934|gb|EFZ54614.1| flagellar motor switch protein FliM [Shigella sonnei 53G]
          Length = 334

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 95/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G +     ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGNGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DGIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|224826626|ref|ZP_03699727.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002]
 gi|224601227|gb|EEG07409.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002]
          Length = 335

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 92/308 (29%), Gaps = 11/308 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
               +           R+                +   + + L       +  + +IS  
Sbjct: 28  GQDSQGVRTYDIGRQERIVRG------RMPTLEIINERFARNLRIGLFNFIRRNAEISVG 81

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             +  K+S  I +       +   +        +    +LV  +++NL G+      ++ 
Sbjct: 82  PVRVQKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIFDPDLVFLVVDNLFGSDGRYHVRVE 141

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++ +R +  +     +                     +        E V  
Sbjct: 142 GRDFTPTEQRIIRRLLEVVFTEYQKAWEPVYPIE--FVYLRSEMNTQFANIATPTEVVVA 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
           +  ++ +      F + +P   +     +  S  Q          +   +R+     V++
Sbjct: 200 MTFHIEMGAGGGEFHVCLPYSMVEPIRDVLSSTMQADRTEVDNRWVSLMSRQVQAAEVDL 259

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     TL  V+ LK G V+     E   A +S  G  +  C  G V  +Y +++  
Sbjct: 260 VATLAGTSVTLGQVLNLKQGDVVTLEIPEMIIADVS--GIPVVECTYGTVQGHYALKVET 317

Query: 303 RINFDQKS 310
            +    + 
Sbjct: 318 ILAGAHEL 325


>gi|323968361|gb|EGB63768.1| flagellar motor switch protein FliM [Escherichia coli M863]
 gi|323977874|gb|EGB72960.1| flagellar motor switch protein FliM [Escherichia coli TW10509]
 gi|327253077|gb|EGE64731.1| flagellar motor switch protein FliM [Escherichia coli STEC_7v]
          Length = 334

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGDSDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|300994270|ref|ZP_07180822.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1]
 gi|300304935|gb|EFJ59455.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1]
          Length = 334

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|269139494|ref|YP_003296195.1| flagellar motor switch protein [Edwardsiella tarda EIB202]
 gi|267985155|gb|ACY84984.1| flagellar motor switch protein [Edwardsiella tarda EIB202]
 gi|304559383|gb|ADM42047.1| Flagellar motor switch protein FliM [Edwardsiella tarda FL6-60]
          Length = 337

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 98/304 (32%), Gaps = 10/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++   +  P  P    R+       +   +    +   + +         +    DI+  
Sbjct: 31  ENHDGDVRPYDPTTQRRVV------RERLQALEIVNERFARQFRMGLFNLLRRSPDITVG 84

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + +   +     +       +   L        +    +LV   ++NL G       ++ 
Sbjct: 85  AVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVD 144

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++ +R +               +          I     N     N+ V T
Sbjct: 145 GREFTHTEQRVIQRMLRLALDAYRDAWGAIFKLDVEYVRSE-IQVKFTNITTSPNDIVVT 203

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNI 242
               + +  ++  F + IP   +     + ++   + S+ + +   D  +++     + +
Sbjct: 204 TPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELEL 263

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                     L DV+ L+IG V+P         + + +G  + +C+ G     Y +R+  
Sbjct: 264 VANFVDVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321

Query: 303 RINF 306
            IN 
Sbjct: 322 MINP 325


>gi|56413111|ref|YP_150186.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362037|ref|YP_002141674.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127368|gb|AAV76874.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093514|emb|CAR58975.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 334

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GTIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  D   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ LK G V+P         I   +G  + + + G V   Y +R+ 
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318

Query: 302 DRINF 306
             IN 
Sbjct: 319 HLINP 323


>gi|332284035|ref|YP_004415946.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7]
 gi|330427988|gb|AEC19322.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7]
          Length = 330

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 101/312 (32%), Gaps = 8/312 (2%)

Query: 1   MRGQSIHKNTSPLHPILLA--RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
           + G+S  K ++   P  +    L+      +   +    +   + + L  +    M  + 
Sbjct: 19  VTGESNEKTSTADDPPGVRPYDLSSPDRVVRHRMQTLELINERFARRLRSVLLSFMRRNA 78

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           DI+  S +  K+S    +       +  ++             NLV  ++++L G     
Sbjct: 79  DITVGSIRIQKYSDFERNLPVPSNLNMVTMKPLRGAALFTFDPNLVFLVIDSLFGGHGRY 138

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  +T E+++ +R +                     E      + K  +    N
Sbjct: 139 STRVEGRDFTTTEQRIIRRLLNLTLESYGGAWEQVYPVQ--FEYIRSEMHTKFASITSGN 196

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPFARKTY 236
           E V   + N+ +     +  + +P   +     +      ++      +       R+  
Sbjct: 197 EIVVVTSFNIELGASGGNLNICLPYSMIEPVRDLLTRPLQEANAGAIDQRWTHQLTRQVR 256

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
             +V +       ++++ +++ L++  ++P              G  +  C  G     Y
Sbjct: 257 SADVELVAEFARIESSIGELMRLEVNDILPLEITP--AINAHVGGVPVMECTYGTFNGRY 314

Query: 297 TIRITDRINFDQ 308
            +R+   +   +
Sbjct: 315 ALRVKKVLASSE 326


>gi|238785486|ref|ZP_04629469.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
           43970]
 gi|238713588|gb|EEQ05617.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
           43970]
          Length = 334

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 10/302 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              +  P  P    R+       +        +   + +         +    DI+    
Sbjct: 30  TETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPI 83

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +   +     +       +   L           + +LV   ++NL G       ++  R
Sbjct: 84  KIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++  R +           +   +          I     N     N+ V T  
Sbjct: 144 EFTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTP 202

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
            ++ I  ++  F + IP   +     +  +   + S  +     +   ++     + +  
Sbjct: 203 FHVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVA 262

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                   L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   I
Sbjct: 263 NFVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLI 320

Query: 305 NF 306
           N 
Sbjct: 321 NP 322


>gi|299068765|emb|CBJ40005.1| flagellar motor switching and energizing component [Ralstonia
           solanacearum CMR15]
          Length = 335

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 90/276 (32%), Gaps = 5/276 (1%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + +         +  + +IS    +  K+S  I +       +   +  
Sbjct: 50  RMPTLEIINERFARNWRMGLFNFLRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                      NL+  ++++L G       ++  R  + VE+++ +R +  +     +  
Sbjct: 110 LRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAW 169

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                     E      + +       NE V +   +M + +      + +P   +    
Sbjct: 170 QPIYPIE--FEPLRMEMHTEFANVATPNEVVVSTRFSMELGSNGGDVHVCMPYTMIEPIR 227

Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  S+ Q ++    +  +   +++     V +   +      + D++ +K+G V+P   
Sbjct: 228 DLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL 287

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                     +G  +  C  G     Y +R+   +N
Sbjct: 288 --DDAVTARVDGVPVMECAYGTFNGQYALRVNRMLN 321


>gi|15831938|ref|NP_310711.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           Sakai]
 gi|82543593|ref|YP_407540.1| flagellar motor switch protein FliM [Shigella boydii Sb227]
 gi|157156914|ref|YP_001463247.1| flagellar motor switch protein FliM [Escherichia coli E24377A]
 gi|157161416|ref|YP_001458734.1| flagellar motor switch protein FliM [Escherichia coli HS]
 gi|168751874|ref|ZP_02776896.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758259|ref|ZP_02783266.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764429|ref|ZP_02789436.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771552|ref|ZP_02796559.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777372|ref|ZP_02802379.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783342|ref|ZP_02808349.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790295|ref|ZP_02815302.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC869]
 gi|168802292|ref|ZP_02827299.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC508]
 gi|170019722|ref|YP_001724676.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739]
 gi|170684212|ref|YP_001743300.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5]
 gi|188494069|ref|ZP_03001339.1| flagellar motor switch protein FliM [Escherichia coli 53638]
 gi|191168308|ref|ZP_03030101.1| flagellar motor switch protein FliM [Escherichia coli B7A]
 gi|191173313|ref|ZP_03034843.1| flagellar motor switch protein FliM [Escherichia coli F11]
 gi|193071140|ref|ZP_03052064.1| flagellar motor switch protein FliM [Escherichia coli E110019]
 gi|194429931|ref|ZP_03062441.1| flagellar motor switch protein FliM [Escherichia coli B171]
 gi|194439587|ref|ZP_03071660.1| flagellar motor switch protein FliM [Escherichia coli 101-1]
 gi|195939251|ref|ZP_03084633.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810354|ref|ZP_03252230.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816529|ref|ZP_03257649.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818778|ref|ZP_03259098.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396357|ref|YP_002271061.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919367|ref|YP_002293451.1| flagellar motor switch protein FliM [Escherichia coli SE11]
 gi|215487145|ref|YP_002329576.1| flagellar motor switch protein FliM [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217328609|ref|ZP_03444690.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554525|ref|YP_002387438.1| flagellar motor switch protein FliM [Escherichia coli IAI1]
 gi|218558802|ref|YP_002391715.1| flagellar motor switch protein FliM [Escherichia coli S88]
 gi|218689940|ref|YP_002398152.1| flagellar motor switch protein FliM [Escherichia coli ED1a]
 gi|218695550|ref|YP_002403217.1| flagellar motor switch protein FliM [Escherichia coli 55989]
 gi|218699494|ref|YP_002407123.1| flagellar motor switch protein FliM [Escherichia coli IAI39]
 gi|218705438|ref|YP_002412957.1| flagellar motor switch protein FliM [Escherichia coli UMN026]
 gi|227885626|ref|ZP_04003431.1| flagellar motor switch protein FliM [Escherichia coli 83972]
 gi|254793595|ref|YP_003078432.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017862|ref|ZP_05431727.1| flagellar motor switch protein FliM [Shigella sp. D9]
 gi|256022397|ref|ZP_05436262.1| flagellar motor switch protein FliM [Escherichia sp. 4_1_40B]
 gi|260844344|ref|YP_003222122.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O103:H2 str. 12009]
 gi|260855920|ref|YP_003229811.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O26:H11 str. 11368]
 gi|260868538|ref|YP_003234940.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O111:H- str. 11128]
 gi|261227560|ref|ZP_05941841.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254616|ref|ZP_05947149.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283122|ref|YP_003499940.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
           CB9615]
 gi|293405428|ref|ZP_06649420.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412]
 gi|293410301|ref|ZP_06653877.1| flagellar motor switch protein FliM [Escherichia coli B354]
 gi|293415255|ref|ZP_06657898.1| flagellar motor switch protein FliM [Escherichia coli B185]
 gi|293446325|ref|ZP_06662747.1| flagellar motor switch protein FliM [Escherichia coli B088]
 gi|298381072|ref|ZP_06990671.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302]
 gi|300818635|ref|ZP_07098843.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1]
 gi|300822285|ref|ZP_07102426.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7]
 gi|300899202|ref|ZP_07117478.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1]
 gi|300904835|ref|ZP_07122661.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1]
 gi|300920164|ref|ZP_07136614.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1]
 gi|300923892|ref|ZP_07139907.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1]
 gi|300931158|ref|ZP_07146505.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1]
 gi|300940400|ref|ZP_07154985.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1]
 gi|300951570|ref|ZP_07165403.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1]
 gi|300956539|ref|ZP_07168821.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1]
 gi|301018205|ref|ZP_07182720.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1]
 gi|301305288|ref|ZP_07211385.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1]
 gi|301327732|ref|ZP_07220937.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1]
 gi|301644596|ref|ZP_07244585.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1]
 gi|306814232|ref|ZP_07448398.1| flagellar motor switch protein FliM [Escherichia coli NC101]
 gi|307138612|ref|ZP_07497968.1| flagellar motor switch protein FliM [Escherichia coli H736]
 gi|307312469|ref|ZP_07592103.1| flagellar motor switch protein FliM [Escherichia coli W]
 gi|309795948|ref|ZP_07690361.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7]
 gi|312967142|ref|ZP_07781360.1| flagellar motor switch protein FliM [Escherichia coli 2362-75]
 gi|312973838|ref|ZP_07788010.1| flagellar motor switch protein FliM [Escherichia coli 1827-70]
 gi|331657991|ref|ZP_08358953.1| flagellar motor switch protein FliM [Escherichia coli TA206]
 gi|331663441|ref|ZP_08364351.1| flagellar motor switch protein FliM [Escherichia coli TA143]
 gi|331668636|ref|ZP_08369484.1| flagellar motor switch protein FliM [Escherichia coli TA271]
 gi|331683497|ref|ZP_08384098.1| flagellar motor switch protein FliM [Escherichia coli H299]
 gi|13362152|dbj|BAB36107.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           Sakai]
 gi|81245004|gb|ABB65712.1| FliM [Shigella boydii Sb227]
 gi|157067096|gb|ABV06351.1| flagellar motor switch protein FliM [Escherichia coli HS]
 gi|157078944|gb|ABV18652.1| flagellar motor switch protein FliM [Escherichia coli E24377A]
 gi|169754650|gb|ACA77349.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739]
 gi|170521930|gb|ACB20108.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5]
 gi|187767405|gb|EDU31249.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014186|gb|EDU52308.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489268|gb|EDU64371.1| flagellar motor switch protein FliM [Escherichia coli 53638]
 gi|188999277|gb|EDU68263.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354878|gb|EDU73297.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359725|gb|EDU78144.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365559|gb|EDU83975.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370212|gb|EDU88628.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC869]
 gi|189375729|gb|EDU94145.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC508]
 gi|190901680|gb|EDV61436.1| flagellar motor switch protein FliM [Escherichia coli B7A]
 gi|190906430|gb|EDV66039.1| flagellar motor switch protein FliM [Escherichia coli F11]
 gi|192955535|gb|EDV86014.1| flagellar motor switch protein FliM [Escherichia coli E110019]
 gi|194412020|gb|EDX28332.1| flagellar motor switch protein FliM [Escherichia coli B171]
 gi|194421496|gb|EDX37510.1| flagellar motor switch protein FliM [Escherichia coli 101-1]
 gi|208724870|gb|EDZ74577.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730872|gb|EDZ79561.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738901|gb|EDZ86583.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157757|gb|ACI35190.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766818|gb|ACI81721.1| flagellar motor switch protein FliM [Escherichia coli]
 gi|209766820|gb|ACI81722.1| flagellar motor switch protein FliM [Escherichia coli]
 gi|209766822|gb|ACI81723.1| flagellar motor switch protein FliM [Escherichia coli]
 gi|209766824|gb|ACI81724.1| flagellar motor switch protein FliM [Escherichia coli]
 gi|209766826|gb|ACI81725.1| flagellar motor switch protein FliM [Escherichia coli]
 gi|209912626|dbj|BAG77700.1| flagellar motor switch protein FliM [Escherichia coli SE11]
 gi|215265217|emb|CAS09607.1| flagellar motor switching and energizing component [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217317956|gb|EEC26383.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352282|emb|CAU98039.1| flagellar motor switching and energizing component [Escherichia
           coli 55989]
 gi|218361293|emb|CAQ98877.1| flagellar motor switching and energizing component [Escherichia
           coli IAI1]
 gi|218365571|emb|CAR03298.1| flagellar motor switching and energizing component [Escherichia
           coli S88]
 gi|218369480|emb|CAR17245.1| flagellar motor switching and energizing component [Escherichia
           coli IAI39]
 gi|218427504|emb|CAR08399.2| flagellar motor switching and energizing component [Escherichia
           coli ED1a]
 gi|218432535|emb|CAR13428.1| flagellar motor switching and energizing component [Escherichia
           coli UMN026]
 gi|222033684|emb|CAP76425.1| flagellar motor switch protein fliM [Escherichia coli LF82]
 gi|227837199|gb|EEJ47665.1| flagellar motor switch protein FliM [Escherichia coli 83972]
 gi|254592995|gb|ACT72356.1| flagellar motor switching and energizing component [Escherichia
           coli O157:H7 str. TW14359]
 gi|257754569|dbj|BAI26071.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O26:H11 str. 11368]
 gi|257759491|dbj|BAI30988.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O103:H2 str. 12009]
 gi|257764894|dbj|BAI36389.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O111:H- str. 11128]
 gi|281179007|dbj|BAI55337.1| flagellar motor switch protein FliM [Escherichia coli SE15]
 gi|284921853|emb|CBG34928.1| flagellar motor switch protein FliM [Escherichia coli 042]
 gi|290762995|gb|ADD56956.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323155|gb|EFE62583.1| flagellar motor switch protein FliM [Escherichia coli B088]
 gi|291427636|gb|EFF00663.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412]
 gi|291432903|gb|EFF05882.1| flagellar motor switch protein FliM [Escherichia coli B185]
 gi|291470769|gb|EFF13253.1| flagellar motor switch protein FliM [Escherichia coli B354]
 gi|294492735|gb|ADE91491.1| flagellar motor switch protein FliM [Escherichia coli IHE3034]
 gi|298278514|gb|EFI20028.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302]
 gi|300316639|gb|EFJ66423.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1]
 gi|300357183|gb|EFJ73053.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1]
 gi|300399792|gb|EFJ83330.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1]
 gi|300403262|gb|EFJ86800.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1]
 gi|300412821|gb|EFJ96131.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1]
 gi|300419855|gb|EFK03166.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1]
 gi|300449197|gb|EFK12817.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1]
 gi|300454794|gb|EFK18287.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1]
 gi|300461015|gb|EFK24508.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1]
 gi|300525168|gb|EFK46237.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7]
 gi|300528807|gb|EFK49869.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1]
 gi|300839494|gb|EFK67254.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1]
 gi|300845732|gb|EFK73492.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1]
 gi|301077071|gb|EFK91877.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1]
 gi|305852391|gb|EFM52842.1| flagellar motor switch protein FliM [Escherichia coli NC101]
 gi|306907640|gb|EFN38143.1| flagellar motor switch protein FliM [Escherichia coli W]
 gi|307553958|gb|ADN46733.1| flagellar motor switch protein FliM [Escherichia coli ABU 83972]
 gi|307626579|gb|ADN70883.1| flagellar motor switch protein FliM [Escherichia coli UM146]
 gi|308120398|gb|EFO57660.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7]
 gi|309702234|emb|CBJ01551.1| flagellar motor switch protein FliM [Escherichia coli ETEC H10407]
 gi|310332433|gb|EFP99668.1| flagellar motor switch protein FliM [Escherichia coli 1827-70]
 gi|312288606|gb|EFR16508.1| flagellar motor switch protein FliM [Escherichia coli 2362-75]
 gi|312946538|gb|ADR27365.1| flagellar motor switch protein FliM [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315061245|gb|ADT75572.1| flagellar motor switching and energizing component [Escherichia
           coli W]
 gi|315257223|gb|EFU37191.1| flagellar motor switch protein FliM [Escherichia coli MS 85-1]
 gi|315286659|gb|EFU46092.1| flagellar motor switch protein FliM [Escherichia coli MS 110-3]
 gi|315290262|gb|EFU49640.1| flagellar motor switch protein FliM [Escherichia coli MS 153-1]
 gi|315296479|gb|EFU55776.1| flagellar motor switch protein FliM [Escherichia coli MS 16-3]
 gi|320175465|gb|EFW50564.1| Flagellar motor switch protein FliM [Shigella dysenteriae CDC
           74-1112]
 gi|320184483|gb|EFW59287.1| Flagellar motor switch protein FliM [Shigella flexneri CDC 796-83]
 gi|320191919|gb|EFW66566.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194342|gb|EFW68973.1| Flagellar motor switch protein FliM [Escherichia coli WV_060327]
 gi|320198635|gb|EFW73235.1| Flagellar motor switch protein FliM [Escherichia coli EC4100B]
 gi|320641793|gb|EFX11181.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           G5101]
 gi|320647152|gb|EFX15985.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str.
           493-89]
 gi|320652436|gb|EFX20734.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str.
           H 2687]
 gi|320658038|gb|EFX25800.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658610|gb|EFX26304.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668508|gb|EFX35335.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152724|gb|EFZ38996.1| flagellar motor switch protein FliM [Escherichia coli EPECa14]
 gi|323158576|gb|EFZ44590.1| flagellar motor switch protein FliM [Escherichia coli E128010]
 gi|323180802|gb|EFZ66342.1| flagellar motor switch protein FliM [Escherichia coli 1180]
 gi|323183929|gb|EFZ69316.1| flagellar motor switch protein FliM [Escherichia coli 1357]
 gi|323186821|gb|EFZ72141.1| flagellar motor switch protein FliM [Escherichia coli RN587/1]
 gi|323378178|gb|ADX50446.1| flagellar motor switch protein FliM [Escherichia coli KO11]
 gi|323937215|gb|EGB33495.1| flagellar motor switch protein FliM [Escherichia coli E1520]
 gi|323940396|gb|EGB36587.1| flagellar motor switch protein FliM [Escherichia coli E482]
 gi|323948351|gb|EGB44338.1| flagellar motor switch protein FliM [Escherichia coli H120]
 gi|323952438|gb|EGB48311.1| flagellar motor switch protein FliM [Escherichia coli H252]
 gi|323956341|gb|EGB52084.1| flagellar motor switch protein FliM [Escherichia coli H263]
 gi|323961989|gb|EGB57588.1| flagellar motor switch protein FliM [Escherichia coli H489]
 gi|323972755|gb|EGB67955.1| flagellar motor switch protein FliM [Escherichia coli TA007]
 gi|324005856|gb|EGB75075.1| flagellar motor switch protein FliM [Escherichia coli MS 57-2]
 gi|324013500|gb|EGB82719.1| flagellar motor switch protein FliM [Escherichia coli MS 60-1]
 gi|324018854|gb|EGB88073.1| flagellar motor switch protein FliM [Escherichia coli MS 117-3]
 gi|324118994|gb|EGC12883.1| flagellar motor switch protein FliM [Escherichia coli E1167]
 gi|326342355|gb|EGD66136.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           1044]
 gi|326344860|gb|EGD68607.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           1125]
 gi|330911751|gb|EGH40261.1| flagellar motor switch protein FliM [Escherichia coli AA86]
 gi|331056239|gb|EGI28248.1| flagellar motor switch protein FliM [Escherichia coli TA206]
 gi|331059240|gb|EGI31217.1| flagellar motor switch protein FliM [Escherichia coli TA143]
 gi|331063830|gb|EGI35741.1| flagellar motor switch protein FliM [Escherichia coli TA271]
 gi|331079712|gb|EGI50909.1| flagellar motor switch protein FliM [Escherichia coli H299]
 gi|332093098|gb|EGI98162.1| flagellar motor switch protein FliM [Shigella boydii 5216-82]
 gi|332096930|gb|EGJ01919.1| flagellar motor switch protein FliM [Shigella boydii 3594-74]
 gi|332343671|gb|AEE57005.1| flagellar motor switch protein FliM [Escherichia coli UMNK88]
          Length = 334

 Score =  244 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|332095507|gb|EGJ00523.1| flagellar motor switch protein FliM [Shigella dysenteriae 155-74]
          Length = 334

 Score =  244 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RKRLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|320529422|ref|ZP_08030510.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399]
 gi|320138388|gb|EFW30282.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399]
          Length = 334

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 8/286 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    L   + + L       +   V+I   S +   +   + S     V    +
Sbjct: 49  SKDQIRTLFMLHESFSRLLNTYLSASLRTMVNIEVLSVEQMTYQEFVQSMANPSVIGIIA 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L     N  I    ++    ++ + G   +  P + +R+L+ +E  + +R I  +     
Sbjct: 109 LPPLKGNIIIEVGPDIAFAYVDRVFGGEGK--PSVKSRALTDIESAVMRRFIDTVINYFR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   E  PN E        +       ++ V  + ++M + +V     + IP   L 
Sbjct: 167 EAWSNVVEFRPNFETMET--NPQFAQIVPPSDMVVLVTIHMKLGDVEGMMNICIPYLVLE 224

Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
                  +S     +     S D +    RK  +  V     +     T+ + +TL  G 
Sbjct: 225 PVMSKLTTSFWVASSVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGD 284

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+      K   +        +    G  GK   ++I+  I  D+ 
Sbjct: 285 VLQLDTLAKDELVCYVGTNAKFRAHPGTAGKRMAVQISGIIEGDED 330


>gi|194434971|ref|ZP_03067214.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012]
 gi|194416806|gb|EDX32932.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012]
          Length = 334

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|146312182|ref|YP_001177256.1| flagellar motor switch protein FliM [Enterobacter sp. 638]
 gi|145319058|gb|ABP61205.1| flagellar motor switch protein FliM [Enterobacter sp. 638]
          Length = 334

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 32  EPEIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           S +LV   ++NL G       ++  R 
Sbjct: 86  IQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +       +                  +     N     N+ V     
Sbjct: 146 FTHTEQRVINRMLKLALESYSDAWKAIHPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPF 204

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I N+   F + +P   +     + ++   + S N+ ++  +   R+     + +   
Sbjct: 205 HVEIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRNEDQNWRENLVRQVQHSQLELVAS 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ L+ G V+P         I   +   + + + G V   Y +R+   IN
Sbjct: 265 FADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDDVPVLTSQYGTVNGQYALRVEHLIN 322

Query: 306 F 306
            
Sbjct: 323 P 323


>gi|170769401|ref|ZP_02903854.1| flagellar motor switch protein FliM [Escherichia albertii TW07627]
 gi|170121725|gb|EDS90656.1| flagellar motor switch protein FliM [Escherichia albertii TW07627]
          Length = 334

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  STESDIRPYDPNTQQRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +         +        +     N     N+ V   
Sbjct: 144 REFTDTEQRVINRMLKLALEGYSDAWKAINPLNVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++  Q  S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPQENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK   V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPSDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|320182738|gb|EFW57622.1| Flagellar motor switch protein FliM [Shigella boydii ATCC 9905]
          Length = 334

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
           Ice1]
 gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
           Ice1]
          Length = 331

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 102/317 (32%), Gaps = 9/317 (2%)

Query: 2   RGQSIHKNTSPLHPILLA--RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
            GQ   ++        +            K        +   Y + L       +   V 
Sbjct: 19  SGQVTPEDVKDDLTSKIRVYDFKRPNKFSKDQIHTLQVIYENYCRSLTTYLAANLRTLVQ 78

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           IS  S     +   I S     + +  ++S  + N  +    N+   +++ L G +    
Sbjct: 79  ISVQSLDQLTYEEFIRSIPNPTIVNIFTMSPLNGNGIMEIHPNIAFAVIDRLFGGTGNPP 138

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  R L+ +E+ + +RT  ++     +      +    LE        +        E
Sbjct: 139 DKI--RGLTEIEQSVFQRTTRRMLDSFTEAWDNIAQVKARLEMIET--NPQFIQIVAPTE 194

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTY 236
            V  I +   I +V     + +P   L              N ++ ++ + ++    +  
Sbjct: 195 MVVVITLACKIGDVEGMINICLPYILLEPIISKLSAHFWFSNAAKERTTEQLEALRNRLE 254

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +  V I   +     ++ +++ L++G VI   +R  +   +    +  Y    G  G   
Sbjct: 255 RALVPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSELEVLIGQRVKYLARPGLSGSKL 314

Query: 297 TIRITDRINFDQKSLKN 313
            I+IT       ++   
Sbjct: 315 GIQITATYEKGVETDDE 331


>gi|238794009|ref|ZP_04637627.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC
           29909]
 gi|238726641|gb|EEQ18177.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC
           29909]
          Length = 334

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 89/301 (29%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +   +    +   + +         +    DI+    +
Sbjct: 31  ETDVKPYDPTTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           + +LV   ++NL G       ++  R 
Sbjct: 85  IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +           +   +          I     N     N+ V T   
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I  ++  F + IP   +     +  +   + S  +     +   ++     + +   
Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|120598257|ref|YP_962831.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1]
 gi|146293665|ref|YP_001184089.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32]
 gi|120558350|gb|ABM24277.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1]
 gi|145565355|gb|ABP76290.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32]
 gi|319427064|gb|ADV55138.1| flagellar motor switch protein FliM [Shewanella putrefaciens 200]
          Length = 343

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 94/305 (30%), Gaps = 11/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +  ++          R+                +   + + L       M    ++S   
Sbjct: 28  AASQDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 81

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF   +H+       +    S       I     LV  L++N  G       ++  
Sbjct: 82  VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 141

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +  +  I        +   +     +                 E V   
Sbjct: 142 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 199

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
           + ++ ++     F + +P   +     +  +  Q+  ++           +   + V  D
Sbjct: 200 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 259

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + TLKDV+  K G +IP         ++       Y C++GR   N  ++I ++
Sbjct: 260 ACVVEHELTLKDVMNFKAGDIIPVELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEK 317

Query: 304 INFDQ 308
           I   +
Sbjct: 318 IPRPE 322


>gi|138894751|ref|YP_001125204.1| flagellar motor switch protein FliM [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247627|ref|ZP_03146329.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16]
 gi|134266264|gb|ABO66459.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196212411|gb|EDY07168.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16]
          Length = 334

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 98/289 (33%), Gaps = 7/289 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V IS  S     +   + S  +  + +   
Sbjct: 50  SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFE 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +  +  + N+   +L+ ++G    ++ ++ +  L+ +E ++      +  A   
Sbjct: 110 VPPLDGHVLLEVNPNIAYAMLDRVMGGRGASMDKVEH--LTEIETRIMSSLFDKAFAHWR 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
               +  E  P   DF      +       N+ V  I++N  I        + IP   L 
Sbjct: 168 DAWESVAEVDPLFVDFEV--NPQFLRMIAPNDTVVVISLNTQIGEARGMMNVCIPHVVLE 225

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q + + +S +      R+     + I   +     T+ + + L++G V
Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAGRIERRIRAAQLPIVAELGTAVVTVGEFLQLEVGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I          ++       +  + G+  K   ++I   I   ++S   
Sbjct: 286 IQLKQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGGEESYDE 334


>gi|317492415|ref|ZP_07950844.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919754|gb|EFV41084.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 337

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 98/302 (32%), Gaps = 10/302 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              +  P  P    R+       +   +    +   + +         +    DI+  + 
Sbjct: 33  SESDVRPYDPTTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAV 86

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +   +     +       +   L+       +  + +LV   ++NL G       ++  R
Sbjct: 87  KIQPYHEFARNLPVPTNLNLIHLNPLRGTALMVFAPSLVFMAVDNLFGGDGRFPTKVDGR 146

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ KR +           S   +          I     N     N+ V T  
Sbjct: 147 EFTHTEQRVIKRMLRLALDAYRDAWSAIYKLEVEYVRSE-IQVKFTNITTSPNDIVVTTP 205

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
             + +  ++  F + IP   +     + ++   + S+ + +   D  +++     + +  
Sbjct: 206 FTVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVA 265

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                   L +V+ L+ G V+P         I + +G  + +C+ G     Y +R+   I
Sbjct: 266 NFVDIPLRLSEVLKLQPGDVLPIEKP--EKLIANVDGVPVLTCQYGSQNGQYALRVERLI 323

Query: 305 NF 306
           N 
Sbjct: 324 NP 325


>gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1]
 gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1]
          Length = 349

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 91/301 (30%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + + +       +    ++S    Q  
Sbjct: 33  DVVHFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMM 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF    ++       +            I     LV  L+EN  G       ++  R  +
Sbjct: 87  KFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  +  +     +  S         E                 E +   + ++
Sbjct: 147 PTERRIIQLLMKTVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHI 204

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++     F +++P   +     +  +  Q+               +   + VN    + 
Sbjct: 205 EVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLL 264

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            K  +L+D++ L+ G +IP    E   A +       +  ++GR G+   ++I+++I   
Sbjct: 265 EKDVSLRDLMELQAGDIIPIDMPEN--ATMFVEELPTFRVKMGRTGEKVAVQISEKIRRP 322

Query: 308 Q 308
            
Sbjct: 323 D 323


>gi|170725980|ref|YP_001760006.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908]
 gi|169811327|gb|ACA85911.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908]
          Length = 342

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 94/297 (31%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + L       M    ++S    Q  KF  
Sbjct: 35  YDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQMLKFGE 88

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
            +H+       +    +       I     LV  L++N  G       ++  R  +  E+
Sbjct: 89  YVHTLFVPTSLNMVRFNPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFTPTER 148

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  I        +   +     +                 E V   + ++ ++ 
Sbjct: 149 RIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVISSFHIEVDG 206

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F + +P   +     +  +  Q+ +++           +   +NV +D  +   + 
Sbjct: 207 GGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALKDEIMDVNVGLDATVVEHQI 266

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           TLKDV+ LK G +IP         IL       + C+LG+   N  +R+  +I   +
Sbjct: 267 TLKDVMELKQGDIIPVELP--EHIILRVEDLPTFRCKLGKARDNLALRVIQKIPRPE 321


>gi|296103565|ref|YP_003613711.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058024|gb|ADF62762.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 334

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 93/301 (30%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 32  DSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L        +  S +LV   ++NL G       ++  R 
Sbjct: 86  IQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +       +                  +     N     N+ V     
Sbjct: 146 FTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPF 204

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I N+   F + +P   +     + ++   + S ++ ++  +   R+     + +   
Sbjct: 205 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVAS 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 265 FADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLIN 322

Query: 306 F 306
            
Sbjct: 323 P 323


>gi|294140210|ref|YP_003556188.1| flagellar motor switch protein FliM [Shewanella violacea DSS12]
 gi|293326679|dbj|BAJ01410.1| flagellar motor switch protein FliM [Shewanella violacea DSS12]
          Length = 343

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 96/297 (32%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + L       M    ++S    Q  KF  
Sbjct: 36  YDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQMLKFGE 89

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
            +H+       +    S       I     LV  L++N  G       ++  R  +  E+
Sbjct: 90  YVHTLFVPTSLNMVRFSPLKGTGLITMEARLVFILVDNFFGGDGRFHAKIEGREFTPTER 149

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  I        +   +     E                 E V   + ++ ++ 
Sbjct: 150 RIVQLLLKIIFEDYKDAWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVVSSFHIEVDG 207

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F + +P   +     +  +  Q+ +++           +   ++V ID  I  ++ 
Sbjct: 208 GGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSLALKDEIMDIDVGIDATIVEQQI 267

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           TLKDV+  K G +IP         +L       Y C+LG+   N  +RIT++I   +
Sbjct: 268 TLKDVMEFKAGDIIPVELP--EHIVLRVEDLPTYRCKLGKTRDNLALRITEKIPRPE 322


>gi|193066386|ref|ZP_03047434.1| flagellar motor switch protein FliM [Escherichia coli E22]
 gi|192925971|gb|EDV80617.1| flagellar motor switch protein FliM [Escherichia coli E22]
          Length = 334

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKALNPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|15802380|ref|NP_288406.1| flagellar motor switch protein FliM [Escherichia coli O157:H7
           EDL933]
 gi|12516052|gb|AAG56960.1|AE005417_2 flagellar biosynthesis, component of motor switch and energizing,
           enabling rotation and determining its direction
           [Escherichia coli O157:H7 str. EDL933]
          Length = 334

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+   
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGX 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|291617855|ref|YP_003520597.1| FliM [Pantoea ananatis LMG 20103]
 gi|291152885|gb|ADD77469.1| FliM [Pantoea ananatis LMG 20103]
 gi|327394272|dbj|BAK11694.1| flagellar motor switch protein FliM [Pantoea ananatis AJ13355]
          Length = 335

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 92/306 (30%), Gaps = 10/306 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
           +      +  P  P    R+       +   +    +   + +         +    DIS
Sbjct: 27  KQNGPEGDIRPYDPNTQRRVV------RERLQALEIINERFARSFRMALFNLLRRSPDIS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   L        +  S +LV   ++NL G       +
Sbjct: 81  VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ +R +       +                  +     N     N+ V
Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIV 199

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240
                 + I N+   F + IP   +     + ++   + S ++     D   ++     +
Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLREMLVNPPLENSRSEDTHWRDNLVKQVQHSEL 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          L  V+ LK G V+P         I   +G  + + + G +   Y +R+
Sbjct: 260 ELIAHFAETSLRLSRVLQLKPGDVLPIEKP--ERIIAHVDGVPVLTSQYGTLNGQYALRV 317

Query: 301 TDRINF 306
              IN 
Sbjct: 318 EHLINP 323


>gi|328948403|ref|YP_004365740.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM
           2489]
 gi|328448727|gb|AEB14443.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM
           2489]
          Length = 344

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 113/314 (35%), Gaps = 10/314 (3%)

Query: 2   RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
            G+S      P+     I +          K   +  S++   + +        ++   V
Sbjct: 19  TGESEADEFKPVTDTRRIKIYDFRRPDKFSKEQIRTVSNMHETFARLTTTSLSAQLRTLV 78

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
            +   S     +   I S       +  ++     N  +  +  +   +++ L G S +T
Sbjct: 79  HVHVASVDQLTYEEFIRSIPTPTTLAVINMDPLKGNAVLEIAPEITFIIIDRLFGGSGDT 138

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++ NR L+ +E+ + +  I +I A + +  +   +  P L+        +       +
Sbjct: 139 GGKV-NRDLTDIEQSVMEGIIVRILANMREAWTQVIDLRPRLQQIET--NPQFAQIVPPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235
           E V  + + + I   A    + IP  T+              +   + +   +     K 
Sbjct: 196 EMVILVTLEIKIGEEAGMMNICIPYITIEPIVSKLSSSFWFSSVRRSSTTQYLGTLKEKL 255

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGK 294
             + + +   I      ++DV++L+ G VI     +      LS   K+ + C+ G VGK
Sbjct: 256 ADVEMELVADIGSINVPIRDVLSLRTGDVIRLNTIKVGEPLTLSVGSKKKFYCQPGVVGK 315

Query: 295 NYTIRITDRINFDQ 308
              ++I ++I+  +
Sbjct: 316 KVAVQIIEKIDEQE 329


>gi|238798578|ref|ZP_04642055.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
           43969]
 gi|238717598|gb|EEQ09437.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
           43969]
          Length = 334

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +        +   + +         +    DI+    +
Sbjct: 31  ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           + +LV   ++NL G       ++  R 
Sbjct: 85  IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +           +   +          I     N     N+ V T   
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I  ++  F + IP   +     +  +   + S  +     +   ++     + +   
Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|154686048|ref|YP_001421209.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens
           FZB42]
 gi|154351899|gb|ABS73978.1| FliM [Bacillus amyloliquefaciens FZB42]
          Length = 332

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 93/286 (32%), Gaps = 8/286 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  K+   + IS +S     +   I S     + +   
Sbjct: 49  SKDQIRSLTRIHDNFARLLTTHFSAKLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFD 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +  +  +   +L+ ++G    T  +  +  L+ +E  +             
Sbjct: 109 VHPMEGRIMMEVNPTIAYAMLDRVMGGIGITHNKADS--LTEIETNIISNLFENALGNYK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +   +  +  P  E        +       NE V  I++N  I  ++    L IP   L 
Sbjct: 167 EAWQSIADIDP--EMTEFEVNPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPHVVLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q+       +      ++     + +   +   + T+++ ++L++G  
Sbjct: 225 PIIPKLSVHYWMQSDRNEAKPEETKLLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDC 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309
           I           +    K  +  + GRV +   ++I D  I  +Q 
Sbjct: 285 ITLDKSVTDPLTVLVGNKPKFLGQAGRVNRRQAVQILDHDIRGEQD 330


>gi|300717238|ref|YP_003742041.1| flagellar motor switch protein [Erwinia billingiae Eb661]
 gi|299063074|emb|CAX60194.1| Flagellar motor switch protein [Erwinia billingiae Eb661]
          Length = 335

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 32  DNDIRPYDPNTQRRMV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L        +  S +LV   ++NL G       ++  R 
Sbjct: 86  IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +       ++                 +     N     N+ V T   
Sbjct: 146 FTATEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVITTPF 204

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
            + I N+   F + IP   +       ++   + S  + ++  D   ++     + +   
Sbjct: 205 QVEIGNLVGEFNICIPFSMIEPLRETLVNPPLENSRQEDQNWRDTLVKQVQHSELELIAN 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  +  ++ LK G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 265 FGEVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 322

Query: 306 F 306
            
Sbjct: 323 P 323


>gi|254506968|ref|ZP_05119107.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16]
 gi|219550253|gb|EED27239.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16]
          Length = 349

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 90/305 (29%), Gaps = 11/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +   +          R+                +   + + +       +    ++S   
Sbjct: 29  ASDSSAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSING 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF    ++       +            I     LV  L+EN  G       ++  
Sbjct: 83  VQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +  +  +     +  S         E                 E +   
Sbjct: 143 REFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVS 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
           + ++ ++     F +++P   +     +  +  Q+               +   + VN  
Sbjct: 201 SFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFR 260

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +  +  +L+D++ L+ G +IP        A +       Y  ++GR G    ++++++
Sbjct: 261 VNLLEQDISLRDLMELRPGDIIPISMP--EHATMFVEELPTYRVKMGRSGDKLAVQVSEK 318

Query: 304 INFDQ 308
           I    
Sbjct: 319 IKRPD 323


>gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
           43243]
          Length = 327

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 98/293 (33%), Gaps = 7/293 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +    +   + + L       +   V +   + +   +S   ++   
Sbjct: 39  DFARPSKFSKEHLRTLEIIFEHFGRLLATNLPGYLRKTVSVDVVNSEVVIYSEFSNALSN 98

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             +    ++     N  +  ++NL   +++ LLG S  T+ +   R  S +E  + +R  
Sbjct: 99  PVLLGVVTMPPLKGNIIMEMASNLGYAIIDRLLGGSGNTMDK--ARDFSEIELTILERIF 156

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
                +L +      ++SP LE        +       +E +  + +++ I  V     +
Sbjct: 157 TICVNLLQEPWQNVVQTSPRLERIET--NSQFAQIISPSETIAIVTLSIKIGEVEGLMNI 214

Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +P  TL                 +   +   D       +  + +   +   + ++ D 
Sbjct: 215 CLPFVTLEPVMDKLNTKYWFSTLQDKDDQSYQDAIESLIDRAQIPMKAVLGHSRISVGDF 274

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V L++G +I    +      +     + ++   G     Y IRIT+ I  + +
Sbjct: 275 VNLQLGDIIRLDRKVDDELEVYVGNIKKFAALPGYSEDKYAIRITEVIKEESE 327


>gi|30063384|ref|NP_837555.1| flagellar motor switch protein FliM [Shigella flexneri 2a str.
           2457T]
 gi|56480007|ref|NP_707830.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301]
 gi|30041636|gb|AAP17364.1| flagellar motor switch protein FliM [Shigella flexneri 2a str.
           2457T]
 gi|56383558|gb|AAN43537.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301]
 gi|313650167|gb|EFS14580.1| flagellar motor switch protein FliM [Shigella flexneri 2a str.
           2457T]
 gi|332757511|gb|EGJ87846.1| flagellar motor switch protein FliM [Shigella flexneri K-671]
 gi|333017577|gb|EGK36889.1| flagellar motor switch protein FliM [Shigella flexneri K-304]
          Length = 334

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|127512304|ref|YP_001093501.1| flagellar motor switch protein FliM [Shewanella loihica PV-4]
 gi|126637599|gb|ABO23242.1| flagellar motor switch protein FliM [Shewanella loihica PV-4]
          Length = 341

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 98/304 (32%), Gaps = 5/304 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             +  S          + +    +        +   + + L       M    ++S    
Sbjct: 21  EEEEVSDALDARAYDFSSQDRIVRGRMPTLEIVNERFARHLRISMFNMMRRAAEVSINGV 80

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           Q  KF   +H+       +    S       I     LV  L++N  G       ++  R
Sbjct: 81  QMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGR 140

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ +  +  I     +  +   +     +                 E V   +
Sbjct: 141 EFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVSS 198

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ ++     F + +P   +     +  +  Q+ +++           +   + V +D 
Sbjct: 199 FHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALKDEIMDVEVGLDA 258

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            I  K+ +LKDV+  K G +IP         +L       Y C+LGR  +N  + I ++I
Sbjct: 259 TIVEKEISLKDVMGFKAGDIIPVEMP--EYIVLRVEDLPTYRCKLGRSRENLALNIREKI 316

Query: 305 NFDQ 308
              +
Sbjct: 317 PRPE 320


>gi|332756101|gb|EGJ86454.1| flagellar motor switch protein FliM [Shigella flexneri 4343-70]
 gi|332757253|gb|EGJ87590.1| flagellar motor switch protein FliM [Shigella flexneri 2747-71]
 gi|332766683|gb|EGJ96887.1| flagellar motor switch protein FliM [Shigella flexneri 2930-71]
 gi|333003346|gb|EGK22892.1| flagellar motor switch protein FliM [Shigella flexneri K-218]
          Length = 334

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
 gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY]
 gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
 gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY]
          Length = 334

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 93/300 (31%), Gaps = 11/300 (3%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
                     R+                +   + +         +    +IS  +    +
Sbjct: 35  VRNYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGTVSVQR 88

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           +S  +        F+  ++     +  + C  +LV  +++ L G   +   ++  R  S 
Sbjct: 89  YSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGVGKFQTRIEGRDFSA 148

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E+++  R +  I A   +            +        +       +E V +    + 
Sbjct: 149 TEQRVINRLVDVICAEYKKAWQGIYPLELAYQRSEM--QPQFANIATPSEIVVSTAFQLE 206

Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
           I ++A +  + +P  TL     +   S Q  +       +    R+     V +   +  
Sbjct: 207 IGDLAGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVRVLTREIQAAEVTLVAELAR 266

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              T++ ++ +K G  I            S  G  ++ C+ G     Y IRI + +   +
Sbjct: 267 ADATVEQLLAMKPGDFIELEREP--RIRASIEGVPVFECQYGTHNSKYAIRIEECLRGAE 324


>gi|121997289|ref|YP_001002076.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1]
 gi|121588694|gb|ABM61274.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1]
          Length = 381

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
              P       R+                +   + +         +    ++S T  +  
Sbjct: 34  ELRPYTFTAEERIVRG------RMPTLEMINERFGRLFRIGLFNMLRRTPEVSVTGVEMM 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +   +     +        LV  +++N  G       ++  R  +
Sbjct: 88  KFGEYVHTLFVPTSLNIIRVPPLRGSGLFVIDPKLVFLVVDNFFGGGGHFYLKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  + Q    L +  +         E        +        E V     ++
Sbjct: 148 PTEQRVIRLMLDQAFDDLREAWNPVLGVD--FEYVNMEVNPQFANIVSPTEVVVVSKFHV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++       + +P   +     I  +  Q+   +  +        +     V + + + 
Sbjct: 206 ELDGGGGDIHVTLPYTMVEPIREILDAGVQSDRNDVDDRWAKALREEMKTAPVTLHSTLA 265

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             + TL+D++ LK G VIP    E+    +      ++    G    N  +RI +++   
Sbjct: 266 RSEITLRDLMHLKAGDVIPIEMPERVVVEVEE--VPVFYGTYGVCEGNAALRIDEKVQAP 323

Query: 308 QK 309
           ++
Sbjct: 324 ER 325


>gi|332140589|ref|YP_004426327.1| flagellar motor switch protein FliM [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550611|gb|AEA97329.1| flagellar motor switch protein FliM [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 352

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 90/300 (30%), Gaps = 11/300 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              +T         R+                +   + + +       M    ++S    
Sbjct: 30  SDASTLEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGI 83

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           Q  KF   IH+       +            I     LV  L++N  G       ++  R
Sbjct: 84  QMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ +  +  I     +  +   +   + E                 E V   +
Sbjct: 144 EFTPTERRIIQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISS 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ ++     F + +P   L     +  +  Q+  E+           +   + V + T
Sbjct: 202 FHIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVALTT 261

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +      L+DV+  K G +IP          +       +  +LGR   N  ++I ++I
Sbjct: 262 HMLDVDVPLRDVMEFKPGDIIPVEMP--ETITVLIEDLPTFRAKLGRSRDNLALKIVEKI 319


>gi|167623386|ref|YP_001673680.1| flagellar motor switch protein FliM [Shewanella halifaxensis
           HAW-EB4]
 gi|167353408|gb|ABZ76021.1| flagellar motor switch protein FliM [Shewanella halifaxensis
           HAW-EB4]
          Length = 342

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 95/301 (31%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + + L       M    ++S    Q  
Sbjct: 31  DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +    S       I     LV  L++N  G       ++  R  +
Sbjct: 85  KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  +  I        +   +     +                 E V   + ++
Sbjct: 145 PTERRIVQLLLKIIFEDYKDAWAPVMDVQ--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 202

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++     F + +P   +     +  +  Q+ +++           +   ++V ID  I 
Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIV 262

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             K TLK V+  K G VIP         IL       Y C++GR  +N  ++I ++I   
Sbjct: 263 EHKVTLKQVLEFKAGDVIPVELP--EYIILKVEDLPTYRCKMGRTKENLALKICEQIPRP 320

Query: 308 Q 308
           +
Sbjct: 321 E 321


>gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
 gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
          Length = 349

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 91/304 (29%), Gaps = 11/304 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              +          R+                +   + + +       +    ++S    
Sbjct: 30  SDTSAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 83

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           Q  KF    ++       +            I     LV  L+EN  G       ++  R
Sbjct: 84  QMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ +  +  +     +  S         E                 E +   +
Sbjct: 144 EFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSS 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ ++     F +++P   +     +  +  Q+               +   + VN   
Sbjct: 202 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRV 261

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +  +  +L+D++ L+ G +IP        A +       +  ++GR G+N  ++++++I
Sbjct: 262 NLLEQDISLRDLMELQPGDIIPITMP--EHATMFVEELPTFRVKMGRSGENLAVQVSEKI 319

Query: 305 NFDQ 308
               
Sbjct: 320 KRPD 323


>gi|297530595|ref|YP_003671870.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3]
 gi|297253847|gb|ADI27293.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3]
          Length = 334

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 7/289 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V IS  S     +   + S  +  + +   
Sbjct: 50  SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFE 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +  +  + N+   +L+ ++G     + ++ +  L+ +E ++      +      
Sbjct: 110 VPPLGGHVLLEVNPNIAYAMLDRVMGGRGVGMDKVEH--LTEIETRIMSNLFDKAFVYWR 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
               +  E  P   DF      +       N+ V  I++N  I        + IP   L 
Sbjct: 168 DAWESVAEVDPLFVDFEV--NPQFLRMIAPNDTVVVISLNTQIGEARGMMNVCIPHVVLE 225

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q + + +S +      ++     + I   +     T+ + + L+ G V
Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAKRIEQRIRAAKLPIIAELGTAVITVNEFLQLEAGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I          ++       +  + G+  K   ++I   I  D+     
Sbjct: 286 IQLEQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGDKDDHDE 334


>gi|56419765|ref|YP_147083.1| flagellar motor switch protein FliM [Geobacillus kaustophilus
           HTA426]
 gi|261419430|ref|YP_003253112.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61]
 gi|319766245|ref|YP_004131746.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52]
 gi|56379607|dbj|BAD75515.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
 gi|261375887|gb|ACX78630.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61]
 gi|317111111|gb|ADU93603.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52]
          Length = 334

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 7/289 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V IS  S     +   + S  +  + +   
Sbjct: 50  SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFE 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +  +  + N+   +L+ ++G     + ++ +  L+ +E ++      +      
Sbjct: 110 VPPLGGHVLLEVNPNIAYAMLDRVMGGRGVGMDKVEH--LTEIETRIMSNLFDKAFVHWR 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
               +  E  P   DF      +       N+ V  I++N  I        + IP   L 
Sbjct: 168 DAWESVAEVDPLFVDFEV--NPQFLRMIAPNDTVVVISLNTQIGEARGMMNVCIPHVVLE 225

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q + + +S +      ++     + I   +     T+ + + L+ G V
Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAKRIEQRIRAAKLPIIAELGTAVITVNEFLQLEAGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I          ++       +  + G+  K   ++I   I  D+     
Sbjct: 286 IQLEQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGDEDDHDE 334


>gi|238920318|ref|YP_002933833.1| flagellar motor switch protein FliM [Edwardsiella ictaluri 93-146]
 gi|238869887|gb|ACR69598.1| flagellar motor switch protein FliM, putative [Edwardsiella
           ictaluri 93-146]
          Length = 337

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 97/304 (31%), Gaps = 10/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++      P  P    R+       +   +    +   + +         +    DI+  
Sbjct: 31  ETHDGEVRPYDPTTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVG 84

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + +   +     +       +   L        +    +LV   ++NL G       ++ 
Sbjct: 85  AVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVD 144

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++ +  +           S   +          I     N     N+ V T
Sbjct: 145 GREFTHTEQRVIQSMLRLALDAYRDAWSAIFKLDIEYVRSE-IQVKFTNITTSPNDIVVT 203

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNI 242
               + +  ++  F + IP   +     + ++   + S+ + +   D  +++     + +
Sbjct: 204 TPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELEL 263

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                     L DV+ L+IG V+P         + + +G  + +C+ G     Y +R+  
Sbjct: 264 VADFVDIPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321

Query: 303 RINF 306
            IN 
Sbjct: 322 MINP 325


>gi|121608105|ref|YP_995912.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae
           EF01-2]
 gi|121552745|gb|ABM56894.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae
           EF01-2]
          Length = 334

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + + L       +    +IS       
Sbjct: 34  SVRNYDLSSQERIVRG------RMPTMEIVNERFARNLRIGLFNFIRRSPEISVGMVSVQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           ++S  +        F+  ++     +  + C  +LV  +++ L G + +   ++  R  S
Sbjct: 88  RYSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGAGKFQTRIEGRDFS 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +  I A   +           LE        +       +E V +    +
Sbjct: 148 PTEQRVINRLVDVICAEYKKAWQGIYPLE--LEYQRSEMQPQFANIATPSEIVVSTAFQL 205

Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I ++  +  + +P  TL     +   S+Q  S       +    R+     V +   + 
Sbjct: 206 EIGDLPGAIHMCMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVVLVAELA 265

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               T++ ++ LK G  I    +       +  G  I+ C+ G     Y IRI   +   
Sbjct: 266 RADATVEQLLALKPGDFIELERQP--RIRAAIGGVPIFECQYGTHNCRYAIRIEKCLRNA 323

Query: 308 Q 308
            
Sbjct: 324 D 324


>gi|292493590|ref|YP_003529029.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4]
 gi|291582185|gb|ADE16642.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4]
          Length = 349

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 98/307 (31%), Gaps = 16/307 (5%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            +   P       R+                +   + + L +         +D++ +  Q
Sbjct: 34  EEAVRPYDFSSEDRIVRA------RLPALEMINERFVRQLRRSLFNLFRRAIDVTVSGMQ 87

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH-----ETIPQ 121
             KFS  IH+       +   +S             LV  +++N  G S       +  +
Sbjct: 88  MVKFSEYIHTLFVPTSLNMVQMSPLQGTSLFVFDPKLVFMMVDNYFGGSGRAYARRSYAR 147

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E ++ +  + ++ A L Q          + E        +  T    +E V
Sbjct: 148 IEGREFTPTEVRVVQLVLEKVFADLEQAWEPVLAV--HFEYLQAEPNPQFATIVSPSEVV 205

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNV 240
                 +  +     F + +P   L     +     Q+ S    E        K  +  V
Sbjct: 206 VVSTFFVEFDGGGGEFHITLPYAMLEPIRELLEVGRQSGSSQVDERWDQALQEKILEAEV 265

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +   + +L++++ L+ G ++P      +     A+G  ++    G    NY +++
Sbjct: 266 ELSCTLAETQLSLREILALEPGDILPIELP--SILTAQADGVPVFRARYGVHNDNYALKV 323

Query: 301 TDRINFD 307
            + +   
Sbjct: 324 VEPLPHQ 330


>gi|238751773|ref|ZP_04613261.1| Flagellar motor switch protein fliM [Yersinia rohdei ATCC 43380]
 gi|238710044|gb|EEQ02274.1| Flagellar motor switch protein fliM [Yersinia rohdei ATCC 43380]
          Length = 334

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +        +   + +         +    DI+    +
Sbjct: 31  ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           + +LV   ++NL G       ++  R 
Sbjct: 85  IQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +           +   +          I     N     N+ V T   
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I  ++  F + IP   +     +  +   + S  +     +   ++     + +   
Sbjct: 204 HVEIGTLSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLIN 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|238788326|ref|ZP_04632120.1| Flagellar motor switch protein fliM [Yersinia frederiksenii ATCC
           33641]
 gi|238723572|gb|EEQ15218.1| Flagellar motor switch protein fliM [Yersinia frederiksenii ATCC
           33641]
          Length = 334

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +        +   + +         +    DI+    +
Sbjct: 31  ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           + +LV   ++NL G       ++  R 
Sbjct: 85  IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +           +   +          I     N     N+ V T   
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I  ++  F + IP   +     +  +   + S  +     +   ++     + +   
Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLIN 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|313895914|ref|ZP_07829468.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975339|gb|EFR40800.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 334

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 8/286 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    L   + + L       +   V+I   S +   +   + S     V    +
Sbjct: 49  SKDQIRTLFMLHESFSRLLNTYLSASLRTMVNIEVLSVEQMTYQEFVQSMANPAVIGIIA 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L     N  I    ++    ++ + G   +  P + +R+L+ +E  + +R I  +     
Sbjct: 109 LPPLKGNIIIEVGPDIAFAYVDRVFGGEGK--PSVKSRALTDIESAVMRRFIDTVINYFR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   E  PN E        +       ++ V  + ++M + +V     + IP   L 
Sbjct: 167 EAWSNVVEFRPNFETMET--NPQFAQIVPPSDMVVLVTIHMKLGDVEGMMNICIPYLVLE 224

Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
                  +S     +     S D +    RK  +  V     +     T+ + +TL  G 
Sbjct: 225 PVMSKLTTSFWVAASVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGD 284

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+      K   +        +    G  GK   ++I+  I  D+ 
Sbjct: 285 VLQLDTLAKDELVCYVGTNAKFRAYPGTAGKRMAVQISGIIEGDED 330


>gi|24374733|ref|NP_718776.1| flagellar motor switch protein FliM [Shewanella oneidensis MR-1]
 gi|24349393|gb|AAN56220.1|AE015759_12 flagellar motor switch protein FliM [Shewanella oneidensis MR-1]
          Length = 343

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 93/305 (30%), Gaps = 11/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           ++ +           R+                +   + + L       M    ++S   
Sbjct: 28  AVGQEARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 81

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF   +H+       +            I     LV  L++N  G       ++  
Sbjct: 82  VQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 141

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +  +  I        +   +     +                 E V   
Sbjct: 142 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 199

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
           + ++ ++     F + +P   +     +  +  Q+  ++           +   + V  D
Sbjct: 200 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 259

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + TLKDV+  K G +IP         ++       Y C++GR   N  ++I ++
Sbjct: 260 ATVVEHELTLKDVMNFKAGDIIPIELP--EYIMMRIEDLPTYRCKMGRSRDNLALKIYEK 317

Query: 304 INFDQ 308
           I   +
Sbjct: 318 IPRPE 322


>gi|16129892|ref|NP_416455.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89108777|ref|AP_002557.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. W3110]
 gi|170081589|ref|YP_001730909.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238901150|ref|YP_002926946.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253773106|ref|YP_003035937.1| flagellar motor switch protein FliM [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|120345|sp|P06974|FLIM_ECOLI RecName: Full=Flagellar motor switch protein FliM
 gi|145981|gb|AAA23786.1| FlaAII protein [Escherichia coli]
 gi|1736611|dbj|BAA15770.1| flagellar motor switching and energizing component [Escherichia
           coli str. K12 substr. W3110]
 gi|1788255|gb|AAC75012.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|169889424|gb|ACB03131.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238861113|gb|ACR63111.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253324150|gb|ACT28752.1| flagellar motor switch protein FliM [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448942|gb|ACX39364.1| flagellar motor switch protein FliM [Escherichia coli DH1]
 gi|315136582|dbj|BAJ43741.1| flagellar motor switch protein FliM [Escherichia coli DH1]
          Length = 334

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 93/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ L  G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|330826724|ref|YP_004390027.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
           K601]
 gi|329312096|gb|AEB86511.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
           K601]
          Length = 334

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 90/300 (30%), Gaps = 11/300 (3%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
                     R+                +   + +         +    +IS  +    +
Sbjct: 35  VRDYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNMIRRSPEISVGTVGVQR 88

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           ++  +        F+  ++     +  I C  +L+  +++ L G   +   ++  R  S 
Sbjct: 89  YNAFLRELVVPTNFNIVAIRPLRGSGLIVCEPSLLFGIIDTLYGGVGKLQTRIEGRDFSA 148

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E ++ +R +  I     +           L         +       +E V +    + 
Sbjct: 149 TELRVIQRLVNLICEEYKKAWQGIYPLE--LSYQRSEMQPQFANIATPSEIVVSTAFQLE 206

Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
           I +++ +  + +P  TL     +   S Q  +       +    R+     V +   +  
Sbjct: 207 IGDLSGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVKVLTREIQAAEVTLVAELAR 266

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              T++ ++ +K G  I            S  G  ++ C+ G     Y IRI   +    
Sbjct: 267 ADATVEQLLAMKPGDFIELDREP--RIRASIEGVPVFECQYGTHNAKYAIRIEQCLRGAD 324


>gi|194471387|ref|ZP_03077371.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457751|gb|EDX46590.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 334

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 96/305 (31%), Gaps = 10/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  D   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ LK G V+P         I   +G  + + + G V   Y++R+ 
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYSLRVE 318

Query: 302 DRINF 306
             IN 
Sbjct: 319 HLINP 323


>gi|94500287|ref|ZP_01306820.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65]
 gi|94427586|gb|EAT12563.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65]
          Length = 331

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 12/301 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           +           R+                +   + ++        +    D++    Q 
Sbjct: 31  EGIKSYDLSSQDRIVRG------RMPTLEMINERFARYTRISMFNFLRRSADVASGGIQI 84

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF   IH+       +   +              LV  L++N  G       ++  R  
Sbjct: 85  MKFGEYIHTLYVPTSLNMVKVRPLRGTALFIFDAKLVFKLVDNFFGGDGR-HAKIEGREF 143

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E ++ +  ++Q+   + +      +     E +              +E V   + +
Sbjct: 144 TPTELRVVQMVLSQVFTDMKEAWHAVLDLD--FEYYGSEVNPAMANIVSPSEVVVISSFH 201

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + ++       + +P   +        +  Q+  +   +  +           V +   +
Sbjct: 202 IELDGGGGDLHVALPYSMIEPIREFLDAGVQSDVDEVDDRWVQSLQEDIQSAKVPVHGTV 261

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             ++ +L++V   + G VIP    E    IL ANG  I+  +LG    N  ++I + I  
Sbjct: 262 VDREISLREVAAFQPGDVIPVDMPED--FILQANGTPIFRGQLGVRDDNLAVKIKEPIKR 319

Query: 307 D 307
            
Sbjct: 320 K 320


>gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
 gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
          Length = 349

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            + +        R+                +   + + L       +    ++S    Q 
Sbjct: 32  PSATNFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 85

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF    ++       +            +     LV  L+EN  G       ++  R  
Sbjct: 86  MKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREF 145

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++ +  +  + A   +  S         E                 E +   + +
Sbjct: 146 TPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 203

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + ++     F +++P   +     +  +  Q+               +   + VN    +
Sbjct: 204 VEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNL 263

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L+D++ L++G VIP        A++       Y  ++GR G+   ++++++I  
Sbjct: 264 LEMDIALRDLMELQVGDVIPIKMP--EHAVMFVEDLPTYRVKMGRSGEKLAVQVSEKIKR 321

Query: 307 DQ 308
             
Sbjct: 322 PD 323


>gi|157961196|ref|YP_001501230.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC
           700345]
 gi|157846196|gb|ABV86695.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC
           700345]
          Length = 342

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 96/301 (31%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + + L       M    ++S    Q  
Sbjct: 31  DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +    S       I     LV  L++N  G       ++  R  +
Sbjct: 85  KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  +  I     +  +   E     +                 E V   + ++
Sbjct: 145 PTERRIVQLLLKIIFEDYKEAWAPVMEVQ--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 202

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++     F + +P   +     +  +  Q+ +++           +   ++V ID  I 
Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIV 262

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             K TL++V+  K G VIP         IL       Y C++G+   N  ++I ++I   
Sbjct: 263 EHKLTLREVLEFKAGDVIPVELP--EHIILKVEDLPTYRCKMGKAKDNLALKICEKIPRP 320

Query: 308 Q 308
           +
Sbjct: 321 E 321


>gi|302392382|ref|YP_003828202.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM
           5501]
 gi|302204459|gb|ADL13137.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM
           5501]
          Length = 333

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 101/307 (32%), Gaps = 13/307 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +  K+          +L       K   +    +   + + L      ++   + +   S
Sbjct: 32  TEEKSVKAYDFKHPDKL------SKDQLRTLRIIYENFARLLNTSLSTQLRTMIHVELNS 85

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +   I S  +  + S    +  +  F +  +  L   ++E L G        +  
Sbjct: 86  IEQLSYDEFIRSLPQPTIMSICDFNPLAGEFILEINPRLGYAIVERLFGGQGTPPNNI-- 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  + +E+ + K+ + Q  +   +      +  P +++       +       N+ V   
Sbjct: 144 RDFTDIEEMVLKKVLKQNLSAFVEAWENVIDLKPRIKNLE--SNPQFTQIVPGNDMVILA 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVN 241
             +  I        + IP   L                 ++ S + ++    +  +  + 
Sbjct: 202 TFDAKIAEAEGLINVCIPYIVLEPIVSKLNAQYWFSTSRDSASSEELNKLKDRLSKAKLP 261

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +     T+ D++ L+ G VI    +    A++    KE +  + G VG    I I+
Sbjct: 262 VIANLGTTNITVADLLDLQPGDVIRMDQKATKEAVVKVGNKEKFIGKPGVVGSKLAIEIS 321

Query: 302 DRINFDQ 308
             ++ ++
Sbjct: 322 SVLDKEE 328


>gi|333003041|gb|EGK22595.1| flagellar motor switch protein FliM [Shigella flexneri VA-6]
          Length = 334

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G ++P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDILPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|262404472|ref|ZP_06081027.1| flagellar motor switch protein FliM [Vibrio sp. RC586]
 gi|262349504|gb|EEY98642.1| flagellar motor switch protein FliM [Vibrio sp. RC586]
          Length = 349

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            + +        R+                +   + + L       +    ++S    Q 
Sbjct: 32  PSATNFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 85

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF    ++       +            +     LV  L+EN  G       ++  R  
Sbjct: 86  MKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREF 145

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++ +  +  + A   +  S         E                 E +   + +
Sbjct: 146 TPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 203

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + ++     F +++P   +     +  +  Q+               +   + VN    +
Sbjct: 204 VEVDGGGGDFHMVMPYSMMEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNL 263

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L+D++ L++G VIP        A++       Y  ++GR G+   ++++++I  
Sbjct: 264 LEMDIALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKR 321

Query: 307 DQ 308
             
Sbjct: 322 PD 323


>gi|283785715|ref|YP_003365580.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168]
 gi|282949169|emb|CBG88777.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168]
          Length = 334

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 95/305 (31%), Gaps = 10/305 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GIAGESDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  D   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLREMLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ L+ G V+P         I   +G  + + + G V   Y +R+ 
Sbjct: 261 LVANFADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318

Query: 302 DRINF 306
             IN 
Sbjct: 319 HLINP 323


>gi|319764508|ref|YP_004128445.1| flagellar motor switch protein flim [Alicycliphilus denitrificans
           BC]
 gi|317119069|gb|ADV01558.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
           BC]
          Length = 334

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 90/300 (30%), Gaps = 11/300 (3%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
                     R+                +   + +         +    +IS  +    +
Sbjct: 35  VRDYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNMIRRSPEISVGTVAVQR 88

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           ++  +        F+  ++     +  I C  +L+  +++ L G   +   ++  R  S 
Sbjct: 89  YNAFLRELVVPTNFNIVAIRPLRGSGLIVCEPSLLFGIIDTLYGGVGKLQTRIEGRDFSA 148

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E ++ +R +  I     +           L         +       +E V +    + 
Sbjct: 149 TELRVIQRLVNLICEEYKKAWQGIYPLE--LSYQRSEMQPQFANIATPSEIVVSTAFQLE 206

Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
           I +++ +  + +P  TL     +   S Q  +       +    R+     V +   +  
Sbjct: 207 IGDLSGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVKVLTREIQAAEVTLVAELAR 266

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              T++ ++ +K G  I            S  G  ++ C+ G     Y IRI   +    
Sbjct: 267 ADATVEQLLAMKPGDFIELDREP--RIRASIEGVPVFECQYGTHNAKYAIRIEQCLRGAD 324


>gi|123442771|ref|YP_001006748.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332161335|ref|YP_004297912.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122089732|emb|CAL12585.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318605256|emb|CBY26754.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665565|gb|ADZ42209.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861091|emb|CBX71358.1| flagellar motor switch protein fliM [Yersinia enterocolitica
           W22703]
          Length = 334

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +        +   + +         +    DI+    +
Sbjct: 31  ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           + +LV   ++NL G       ++  R 
Sbjct: 85  IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +           +   +          I     N     N+ V T   
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
            + I  ++  F + IP   +     +  +   + S  +     +   ++     + +   
Sbjct: 204 QVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|33596151|ref|NP_883794.1| flagellar motor switch protein FliM [Bordetella parapertussis
           12822]
 gi|33573154|emb|CAE36805.1| flagellar motor switch protein FliM [Bordetella parapertussis]
          Length = 336

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 92/310 (29%), Gaps = 9/310 (2%)

Query: 4   QSIHKNTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
               +           R   L+      +   +    +   + + +  +    M  + DI
Sbjct: 21  GESDEKQPAGDEAGAPRAYDLSSPERVVRRRMQTLELINERFARHMRNVLLNFMRRNADI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  + +  K++    +       +   +             NLV  ++++L G       
Sbjct: 81  TVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHT 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +T E+++ +R +        +                     K  +   +NE 
Sbjct: 141 RVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEV 198

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQL 238
           V     ++          + +P   +     +       +  E   +        +    
Sbjct: 199 VVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDTALEEVDQRWAQQLQSQVRSA 258

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           ++++        +++ +++ +K G V+P             +G  +     G     Y +
Sbjct: 259 DIDLVAEFGHIPSSIGELMRMKTGDVLPIAVP--ETVTAHVDGVPLMEYGYGVFNGRYAL 316

Query: 299 RITDRINFDQ 308
           R+ + IN+D 
Sbjct: 317 RVQNLINYDD 326


>gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132]
 gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           ND132]
          Length = 325

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 96/303 (31%), Gaps = 13/303 (4%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                        R+            +   +   + +         M   VDI+  S  
Sbjct: 32  DTGVVAFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALANTMRKRVDINPISID 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF   + S       S   +     N  +   + LV  L+EN  G +     ++  R 
Sbjct: 86  MSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGSQP-KVEGRD 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E+ + +R +    A + +      E    +         +       ++ V  +  
Sbjct: 145 FTPIEQAIVERVVKIALANMEESWKPVHEVHVEMVR--TEVNPQFAAIVPPSDVVIVVTF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +EN   S ++ +P  T+         S Q++        I+ F  +  +  V +  R
Sbjct: 203 EVELENAIGSLIVCLPYATMEPIRSKLHASFQSERLEVDHVWINRFKERLMETPVEMVVR 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     + + ++ L+ G +I     E         G   +    GRV  N + ++   I 
Sbjct: 263 LGRTSISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKFQGLPGRVKGNKSFKV---IK 319

Query: 306 FDQ 308
            ++
Sbjct: 320 EEE 322


>gi|157371194|ref|YP_001479183.1| flagellar motor switch protein FliM [Serratia proteamaculans 568]
 gi|157322958|gb|ABV42055.1| flagellar motor switch protein FliM [Serratia proteamaculans 568]
          Length = 333

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S      P  P    R+       +        +   + +         +    DI+   
Sbjct: 29  SNESEVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L+          + +LV   ++NL G       ++  
Sbjct: 83  IKIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ KR +           S   + +        +     N     N+ V T 
Sbjct: 143 REFTPTEQRVIKRMLRLALDAYGDAWSAIYKINVEYVRAE-MQVKFTNITTSPNDIVVTT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
              + I  ++  F + IP   +     +  +   + S  +     +   ++     + + 
Sbjct: 202 PFQVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELI 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   
Sbjct: 262 ANFVDIPMRLSKILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHL 319

Query: 304 INF 306
           IN 
Sbjct: 320 INP 322


>gi|242238988|ref|YP_002987169.1| flagellar motor switch protein FliM [Dickeya dadantii Ech703]
 gi|242131045|gb|ACS85347.1| flagellar motor switch protein FliM [Dickeya dadantii Ech703]
          Length = 343

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 10/302 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
              S   +  P  P    R+  +             +   + +         +    DI+
Sbjct: 28  SAASADSDIKPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNLLRRSPDIT 81

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               +   +     +       +   L           S +LV   ++NL G       +
Sbjct: 82  AGPIKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTK 141

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ KR +           +   +          +     N     N+ V
Sbjct: 142 VEGREFTHTEQRVVKRMLRLALDAYGDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIV 200

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240
            T   ++ I N+   F + IP   +     + ++   + S  + ++  +  A++     +
Sbjct: 201 VTTPFHVEIGNLTGEFNICIPFAMIEPLRELLVNPPLENSRQEDQNWRETLAKQVQHSEL 260

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          L  V+ LK G V+P         +   +G  + + + G     Y +R+
Sbjct: 261 ELVANFVDIPLRLSKVLKLKPGDVLPIEKP--ESLVAHVDGVPVLTGQYGTFKGQYALRV 318

Query: 301 TD 302
             
Sbjct: 319 ER 320


>gi|153834156|ref|ZP_01986823.1| flagellar motor switch protein FliM [Vibrio harveyi HY01]
 gi|156975423|ref|YP_001446330.1| flagellar motor switch protein FliM [Vibrio harveyi ATCC BAA-1116]
 gi|148869526|gb|EDL68524.1| flagellar motor switch protein FliM [Vibrio harveyi HY01]
 gi|156527017|gb|ABU72103.1| hypothetical protein VIBHAR_03154 [Vibrio harveyi ATCC BAA-1116]
          Length = 348

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 11/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
            ++          R+                +   + + +       +    ++S    Q
Sbjct: 31  DESAVSFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF    ++       +            I     LV  L+EN  G       ++  R 
Sbjct: 85  MMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +  +  +     +  S         E                 E +   + 
Sbjct: 145 FTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ ++     F +++P   +     +  +  Q+               +     VN    
Sbjct: 203 HIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVN 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +  K  +L+D++ L+ G VIP        A +       Y  ++GR      ++I++ I 
Sbjct: 263 LLEKDISLRDLMELQPGDVIPIEMP--EHATMFIEDLPTYRVKMGRSEDKMAVQISEEIE 320

Query: 306 F 306
            
Sbjct: 321 R 321


>gi|157692311|ref|YP_001486773.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032]
 gi|194014958|ref|ZP_03053575.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061]
 gi|157681069|gb|ABV62213.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032]
 gi|194013984|gb|EDW23549.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061]
          Length = 332

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 95/286 (33%), Gaps = 8/286 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   + I+ +S     +   I S     + +   
Sbjct: 49  SKDQIRSLTRIHDNFARLLTTHFSAQLRSYIQITVSSVDQVPYEEFIRSIPNMTLLNLFY 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +S       +  +  +   +++ L+G    +  +  +  L+ +E K+             
Sbjct: 109 VSPLEGRIMLEVNPTIGYAMMDRLMGGIGISHNKTES--LTEIETKIISNMFEGALENYR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +   +  +  P  E        +       NE V  I++N  I  V+    L IP   L 
Sbjct: 167 EAWQSITDIEP--EMADFEVNPQFVQMVSPNETVVVISLNTQIGEVSGVINLCIPHVVLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q++     +       ++     + +   +   + T+++ + L+IG  
Sbjct: 225 PIIPKLSVHYWMQSERNEPKQQETKAIEKRIMTAKIPVVAELGESEMTVEEFLNLEIGDC 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309
           I           +    K  +  + GRV +   I+I D  I  ++ 
Sbjct: 285 IALDKPVNAPLTVMVGNKPKFLGQAGRVNRKQAIQILDHDIRGEED 330


>gi|113969632|ref|YP_733425.1| flagellar motor switch protein FliM [Shewanella sp. MR-4]
 gi|114046862|ref|YP_737412.1| flagellar motor switch protein FliM [Shewanella sp. MR-7]
 gi|113884316|gb|ABI38368.1| flagellar motor switch protein FliM [Shewanella sp. MR-4]
 gi|113888304|gb|ABI42355.1| flagellar motor switch protein FliM [Shewanella sp. MR-7]
          Length = 343

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                      R+                +   + + L       M    ++S    Q  
Sbjct: 32  EARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 85

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +            I     LV  L++N  G       ++  R  +
Sbjct: 86  KFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 145

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  +  I        +   +     +                 E V   + ++
Sbjct: 146 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVINSFHI 203

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++     F + +P   +     +  +  Q+  ++           +   + V  D  + 
Sbjct: 204 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDATVV 263

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             + TLKDV+  K G +IP         ++       Y C++GR   N  ++I ++I   
Sbjct: 264 EHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRP 321

Query: 308 Q 308
           +
Sbjct: 322 E 322


>gi|238764404|ref|ZP_04625354.1| Flagellar motor switch protein fliM [Yersinia kristensenii ATCC
           33638]
 gi|238697430|gb|EEP90197.1| Flagellar motor switch protein fliM [Yersinia kristensenii ATCC
           33638]
          Length = 334

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 10/302 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              +  P  P    R+       +        +   + +         +    DI+    
Sbjct: 30  SETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPI 83

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +   +     +       +   L           + +LV   ++NL G       ++  R
Sbjct: 84  KIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++  R +           +   +          I     N     N+ V T  
Sbjct: 144 EFTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTP 202

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
             + I  ++  F + IP   +     +  +   + S  +     +   ++     + +  
Sbjct: 203 FQVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVA 262

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                   L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   I
Sbjct: 263 NFVDIPLRLSQILKLQPGDVLPIDKP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHLI 320

Query: 305 NF 306
           N 
Sbjct: 321 NP 322


>gi|119775425|ref|YP_928165.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B]
 gi|119767925|gb|ABM00496.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B]
          Length = 342

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 92/301 (30%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + + L       M    ++S    Q  
Sbjct: 31  SARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +            I     LV  L++N  G       ++  R  +
Sbjct: 85  KFGEYVHTLFVPTSLNMVRFQPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  +  I        +   +     +                 E V   + ++
Sbjct: 145 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVNSFHI 202

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++     F + +P   +     +  +  Q+  ++           +   + V  +  + 
Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALKDEIMDVEVGFEATVV 262

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             + +L+DV+ ++ G VIP         ++       Y C+LG+  +   ++I ++I   
Sbjct: 263 EHQISLRDVMEMQAGDVIPVELP--EYVLMKIEELPTYRCKLGKSREQLALKICEKIPRP 320

Query: 308 Q 308
           +
Sbjct: 321 E 321


>gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
           6192]
 gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
           6192]
 gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM
           6578]
          Length = 341

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 97/286 (33%), Gaps = 5/286 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  S +   + +        ++   V +   S     +   I S          +
Sbjct: 48  SKEQIRTISIMHETFARLTTTSLSAQLRSLVQVHVASVDQLTYEEFIRSIPNPTTIGIIN 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +  +     +  ++++ L G   +      +R LS +E  + +  + +I   + 
Sbjct: 108 MDPLKGSAILEIDPTITYSIIDRLFGGPGDGSVVPRDRDLSDIETTVMEGIMVRILGNMR 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  P L         +        E V  + +   + +V       IP  T+ 
Sbjct: 168 EAWSQVIDLRPRLGQIDT--NPQFAQIVPPTEMVVLVTLETKVGDVEGMMNFCIPYLTIE 225

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                        +  +  + + +     +   + VN+   +      ++D+++++ G V
Sbjct: 226 PIISKLSAQYWYSSVRKGGTTENLAILKERISSVEVNLVVEVGSMNLKMRDILSIQKGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           I    R K   +L    +  + C  GRVGK   +++ ++I   Q+ 
Sbjct: 286 IMLPTRVKEPLVLKIENRPKFYCRPGRVGKKLAVQLVEKIEESQEV 331


>gi|317048606|ref|YP_004116254.1| flagellar motor switch protein FliM [Pantoea sp. At-9b]
 gi|316950223|gb|ADU69698.1| flagellar motor switch protein FliM [Pantoea sp. At-9b]
          Length = 335

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +   +    +   + +         +    DIS  + +
Sbjct: 32  DGDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMALFNLLRRSPDISVGAIK 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L        +  S +LV   ++NL G       ++  R 
Sbjct: 86  IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +       +                  +     N     N+ V     
Sbjct: 146 FTHTEQRVIRRMLKLALEGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIVVNTPF 204

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
            + I N+   F + IP   +     + ++   + S  +     D   ++     + +   
Sbjct: 205 QVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSELELIAH 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ LK G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 265 FADVSLRLSRILQLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 322

Query: 306 F 306
            
Sbjct: 323 P 323


>gi|238758098|ref|ZP_04619278.1| Flagellar motor switch protein fliM [Yersinia aldovae ATCC 35236]
 gi|238703636|gb|EEP96173.1| Flagellar motor switch protein fliM [Yersinia aldovae ATCC 35236]
          Length = 334

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +        +   + +         +    DI+    +
Sbjct: 31  ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           + +LV   ++NL G       ++  R 
Sbjct: 85  IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R +           +   +          I     N     N+ V T   
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
            + I  ++  F + IP   +     +  +   + S  +     +   ++     + +   
Sbjct: 204 QVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLIN 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|225620315|ref|YP_002721572.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae
           WA1]
 gi|296126963|ref|YP_003634215.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM
           12563]
 gi|225215134|gb|ACN83868.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae
           WA1]
 gi|296018779|gb|ADG72016.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM
           12563]
          Length = 343

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 101/319 (31%), Gaps = 13/319 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +  H+           +        K   +    +   + +        ++   V I   
Sbjct: 32  EVEHRKIKIYDFKRPDKF------SKDQIRTLQMMHENFARVTTTSLSAQLRTLVGIHVA 85

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S     +   I S       +  S+     +  +    ++  T+++ L G   E+  +  
Sbjct: 86  SVDQLTYEEFIRSVSNPSTLAIVSMDPLKGSSILEIDPSITFTIIDRLFGGPGESP-KNL 144

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
           NR L+ +E  + +  I +I   L +  S   +  P L         +       N+ V  
Sbjct: 145 NRELTDIELSVMEGIIVRILGNLREAWSQVIDLRPRLGSIET--NPQFAQMVSPNDMVVL 202

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNV 240
           I +   + +V       IP  T+              +     + + +     K   + V
Sbjct: 203 ITLETKVADVEGMMNFCIPYITIEPILSKFSAQYWYASIRRGSTSENLKIIKEKLQNIFV 262

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                +   +  L D++ L+ G V+ F   +     I     ++ + C  G  G    ++
Sbjct: 263 ETSAELGSMQLPLSDILNLQKGDVVKFTDTKITDPVIFKIGNRKKFLCRPGISGSRMAVQ 322

Query: 300 ITDRINFDQKSLKNFLHKR 318
           +T  ++ +    ++ L K 
Sbjct: 323 LTGVMDGEADITEDDLLKE 341


>gi|261407972|ref|YP_003244213.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10]
 gi|329929322|ref|ZP_08283075.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5]
 gi|261284435|gb|ACX66406.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10]
 gi|328936691|gb|EGG33134.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5]
          Length = 332

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 103/316 (32%), Gaps = 13/316 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   + ++L   F  ++   V I
Sbjct: 27  LKKEETQKKIRSYDFKRALRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +    +   +   I S  +  V +            +    N+   +L+ LLG +     
Sbjct: 81  NVVQVEQLPYDEFIRSIPKMTVLNIFEAEPLVGRMVLEVHPNIAYAMLDRLLGGTGIAPS 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
            + +  ++ +E  + +R  ++    L +   T  + SP LE        +       NE 
Sbjct: 141 SISS--MTEIETIIMERIFSRAFDSLQEAWKTVLDISPRLEALET--NPQFMQIVSPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           +  I+++  I +      L IP   L              ++ +    + +D   ++  +
Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVLEPIMSKLSAHQWFISEKKASVPEEVDALKQRVSK 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + I   + + + T+ + + L +G VI           +    K  +    G +     
Sbjct: 257 AKLPIVAELGVSQLTVSEFLGLSVGDVISLNKPMHDGLSIKVGDKLKFIGSPGTIKDRVA 316

Query: 298 IRITDRINFDQKSLKN 313
           ++I + +    +    
Sbjct: 317 VQIDEIVIEGAEEFDE 332


>gi|312172110|emb|CBX80367.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC
           BAA-2158]
          Length = 336

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 33  DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L        +  S +LV   ++NL G       ++  R 
Sbjct: 87  IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +       ++                 +     N     N+ V T   
Sbjct: 147 FTHTEQRVIRRMLKLALESYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I N+   F + IP   +       ++   ++   + E+  D   ++     + +   
Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVAN 265

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  +  ++ LK G V+P         I   +G  + + + G + K Y +R+   IN
Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323

Query: 306 F 306
            
Sbjct: 324 P 324


>gi|261252329|ref|ZP_05944902.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891]
 gi|260935720|gb|EEX91709.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891]
          Length = 349

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 91/304 (29%), Gaps = 11/304 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              +          R+                +   + + +       +    ++S    
Sbjct: 30  TDASAVEFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 83

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           Q  KF    ++       +            I     LV  L+EN  G       ++  R
Sbjct: 84  QMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ +  +  +     +  S         E                 E +   +
Sbjct: 144 EFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSS 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ ++     F +++P   +     +  +  Q+               +   + VN   
Sbjct: 202 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRV 261

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           ++  +  +L+D++ L+ G +IP        A +       +  ++GR G+   ++++++I
Sbjct: 262 QLLEQDISLRDLMELQPGDIIPINMP--EHATMFVEELPTFRTKMGRSGELLAVQVSEKI 319

Query: 305 NFDQ 308
               
Sbjct: 320 KRPD 323


>gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
 gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
          Length = 322

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 6/277 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q    L +  
Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                   + E                +E V     ++ ++       + +P   +    
Sbjct: 169 QAIMPV--SFEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++Q E  +         + V +   +  ++  L+D++ ++ G VIP   
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVEL 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +L ANG   +   LG    N  ++I D I  
Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGNLALQIIDPIER 321


>gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440]
 gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
 gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440]
 gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida]
 gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
 gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1]
          Length = 322

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 6/277 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q    L +  
Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                   + E                +E V     ++ ++       + +P   +    
Sbjct: 169 QAIMPV--SFEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++Q E  +         + V +   +  ++  L+D++ ++ G VIP   
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVEL 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +L ANG   +   LG    N  ++I D I  
Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGNLALQIIDPIER 321


>gi|213053037|ref|ZP_03345915.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 320

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 10/301 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  D   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +          L  ++ LK G V+P         I   +G  + + + G V   Y +R+ 
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318

Query: 302 D 302
            
Sbjct: 319 H 319


>gi|327193028|gb|EGE59940.1| flagellar C-ring motor switch protein [Rhizobium etli CNPAF512]
          Length = 314

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 168/305 (55%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
            + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV ++Y  C+ G  +
Sbjct: 10  AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 69

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
           H++     N     A+L +WS N  + C N  VITL+E+LLGA+ ETI +  +R LS +E
Sbjct: 70  HLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATAETIEEPADRLLSIIE 129

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             LA     +I+ VL   ++      P+L   +  D   +      +EF   INM++T+ 
Sbjct: 130 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPPEDKPDEFAAAINMSLTLA 189

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            + S F LI+PQ  LLKT + +   + ++   S +  +    +  + +V ++ RI L+  
Sbjct: 190 GIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWSEQLGDQVRRSHVTLEARIRLQDL 249

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 250 TLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 309

Query: 312 KNFLH 316
           ++ ++
Sbjct: 310 RHLMN 314


>gi|301029402|ref|ZP_07192496.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1]
 gi|299877706|gb|EFI85917.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1]
          Length = 334

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKQLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|167034915|ref|YP_001670146.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1]
 gi|166861403|gb|ABY99810.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1]
          Length = 322

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 6/277 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q    L +  
Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                 +   E                +E V     ++ ++       + +P   +    
Sbjct: 169 QAIMPVT--FEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++Q E  +         + V +   +  ++  L+D++ ++ G VIP   
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVEL 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +L ANG   +   LG    N  ++I D I  
Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGNLALQIIDPIER 321


>gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
 gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
          Length = 349

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 92/303 (30%), Gaps = 11/303 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +          R+                +   + + +       +    ++S    Q
Sbjct: 31  DASAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF    ++       +            I     LV  L+EN  G       ++  R 
Sbjct: 85  MMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +  +  +     +  S         E                 E +   + 
Sbjct: 145 FTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ ++     F +++P   +     +  +  Q+               +   + VN    
Sbjct: 203 HIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVD 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +  +  +L+D++ L+ G +IP        A++       +  ++GR G+N  ++++++I 
Sbjct: 263 LLEQDISLRDLMELQPGDIIPVTMP--EHAVMFVEELPTFRVKMGRSGENLAVQVSEKIK 320

Query: 306 FDQ 308
              
Sbjct: 321 RPD 323


>gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
           14580]
 gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
           14580]
 gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2]
 gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580]
 gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2]
          Length = 332

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 96/285 (33%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   + IS +S     +   I S     + +   
Sbjct: 49  SKDQIRSLTRIHDNFARLLTTYFSAQLRTYIQISVSSVDQVPYEEFIRSIPNMTILNLFE 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +  +  +  T+++ ++G    +  ++ +  ++ +E K+             
Sbjct: 109 VRPLEGRIMMEINPTIAYTMMDRVMGGIGSSHNKIDS--MTEIETKIMSNLFESCLTNYK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
               +  E  P + DF      +       NE V  I++N  I +++    L IP   L 
Sbjct: 167 DAWESITEIEPEMSDFEV--NPQFVQMVSPNETVVVISLNTQIGDISGVINLCIPHVVLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q+       +      ++     + I   +   + T+++ + L+IG  
Sbjct: 225 PIIPKLSVHYWMQSDRIEPKPEETKSIEKRILTAQIPIVAELGSSELTIEEFLNLEIGDC 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I           +    K  +  + GR+ +   I+I D     ++
Sbjct: 285 ITLDKSVAEPLTVLVGDKPKFLAQAGRMNRKTAIQILDHDIRGEE 329


>gi|332799187|ref|YP_004460686.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1]
 gi|332696922|gb|AEE91379.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1]
          Length = 331

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 98/313 (31%), Gaps = 13/313 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ + + K   P       +        K      S +   + + L      ++   V I
Sbjct: 27  IKSKELDKKVKPYDFKRPNKF------SKEQLHTLSMIHENFARLLTTYLSAQLRTVVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +    +   ++  I S     + +    S       +  + ++  ++++ LLG   E   
Sbjct: 81  NVFFVEQMTYNEFIFSIPNPSLIAVVDFSPLKGAAIMEINPSIAFSIIDRLLGGPGEYSG 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +L  R  + +E  + ++  ++++ +L+       +    LE        +       NE 
Sbjct: 141 KL--REPTEIETGIIEKVFSKMTRILSDAWKDIADIQTTLEKLET--NSQFVQLVSPNEA 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  I  N  + N      + IP   L                 + Q+E        K Y 
Sbjct: 197 VALITFNAKVGNSEGMINICIPHIVLEPIIPKLSTRIWLSTSKQEQAETTKQFITEKVYD 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
               I   +     T+ + + L  G VI      K  A +    K  +S  +G       
Sbjct: 257 TKTEIRAELGRTLITVGEFINLATGDVIALNKNIKDGADIFIKDKLKFSGSIGVHRNKMA 316

Query: 298 IRITDRINFDQKS 310
           I+I  +     + 
Sbjct: 317 IKIQKKFGEGGEF 329


>gi|304398862|ref|ZP_07380732.1| flagellar motor switch protein FliM [Pantoea sp. aB]
 gi|304353566|gb|EFM17943.1| flagellar motor switch protein FliM [Pantoea sp. aB]
          Length = 335

 Score =  241 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 90/306 (29%), Gaps = 10/306 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
           +      +  P  P    R+       +   +    +   + +         +    DIS
Sbjct: 27  KQNGPEGDIRPYDPNTQRRVV------RERLQALEIINERFARSFRMALFNLLRRSPDIS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   L        +  S +LV   ++NL G       +
Sbjct: 81  VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ +R +       +                  +     N     N+ V
Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIV 199

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240
                 + I N+   F + IP   +     + ++   + S  +     D   ++     +
Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          L  ++ LK G V+P         I   +   + + + G +   Y +R+
Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKP--ERIIAHVDSVPVLTSQYGTMNGQYALRV 317

Query: 301 TDRINF 306
              IN 
Sbjct: 318 EHLINP 323


>gi|308187297|ref|YP_003931428.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1]
 gi|308057807|gb|ADO09979.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1]
          Length = 335

 Score =  241 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 90/306 (29%), Gaps = 10/306 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
           +      +  P  P    R+       +   +    +   + +         +    DIS
Sbjct: 27  KQNGPEGDIRPYDPNTQRRVV------RERLQALEIINERFARSFRMTLFNLLRRSPDIS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   L        +  S +LV   ++NL G       +
Sbjct: 81  VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ +R +       +                  +     N     N+ V
Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIV 199

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240
                 + I N+   F + IP   +     + ++   + S  +     D   ++     +
Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          L  ++ LK G V+P         I   +   + + + G +   Y +R+
Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKP--ERIIAHVDSVPVLTSQYGTMNGQYALRV 317

Query: 301 TDRINF 306
              IN 
Sbjct: 318 EHLINP 323


>gi|297584047|ref|YP_003699827.1| flagellar motor switch protein FliM [Bacillus selenitireducens
           MLS10]
 gi|297142504|gb|ADH99261.1| flagellar motor switch protein FliM [Bacillus selenitireducens
           MLS10]
          Length = 333

 Score =  241 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 108/311 (34%), Gaps = 13/311 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   + + L      ++   V I
Sbjct: 27  LKKEETQKKIKTYDFKRALRF------SKDQIRSLTRIHENFARLLTTQLSAQLRTFVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S  S     +   I S  +  + +          F +  + N+   +L+ +LG   E   
Sbjct: 81  SVASVDQLPYDEFIRSVPKQTILNVFEPYPLDGRFVLEVNPNIAYAMLDRMLGGQGEAYN 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++ N  L+ +E K+  +   +      +   + +E  P ++D       +       NE 
Sbjct: 141 KVDN--LTEIEAKIMTQLFQRTLETFREAWLSVEEIDPMMDDLEV--NPQFLQLVSPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  I+ + TI   +    + +P   +             Q K + +    I+       +
Sbjct: 197 VVVISFSTTIGESSGMINICLPHVVIEPLLPKLSVHLWMQTKKKERKPGEIEALELNIKR 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             +++  ++   + T+++ V L +G  I           ++  G   Y  + G+V ++  
Sbjct: 257 APLDVAVQLGQSEITIEEFVHLAVGDTIELNQSIDELLRMTVGGSPKYKVQPGKVKEHLA 316

Query: 298 IRITDRINFDQ 308
           ++I + I  ++
Sbjct: 317 VQIVEDIEEEE 327


>gi|269961627|ref|ZP_06175989.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
 gi|269833668|gb|EEZ87765.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
          Length = 348

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 85/295 (28%), Gaps = 11/295 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            I     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  +     +  S         E                 E +   + ++ ++ 
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +     VN    +  K  
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +L+D++ L+ G VIP        A +       Y  ++GR      ++I++ I  
Sbjct: 269 SLRDLMELQPGDVIPIEMP--EHATMFIEDLPTYRVKMGRSEDKMAVQISEEIER 321


>gi|117919797|ref|YP_868989.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3]
 gi|117612129|gb|ABK47583.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3]
          Length = 343

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                      R+                +   + + L       M    ++S    Q  
Sbjct: 32  EARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 85

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +            I     LV  L++N  G       ++  R  +
Sbjct: 86  KFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 145

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  +  I        +   +     +                 E V   + ++
Sbjct: 146 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVINSFHI 203

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++     F + +P   +     +  +  Q+  ++           +   + V  D  + 
Sbjct: 204 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDASVV 263

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             + TLKDV+  K G +IP         ++       Y C++GR   N  ++I ++I   
Sbjct: 264 EHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRP 321

Query: 308 Q 308
           +
Sbjct: 322 E 322


>gi|212634374|ref|YP_002310899.1| flagellar motor switch protein FliM [Shewanella piezotolerans WP3]
 gi|212555858|gb|ACJ28312.1| Flagellar motor switch protein FliM [Shewanella piezotolerans WP3]
          Length = 342

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + + L       M    ++S    Q  
Sbjct: 31  DARAYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +    S       I     LV  L++N  G       ++  R  +
Sbjct: 85  KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  +  I     +  +   +     +                 E V   + ++
Sbjct: 145 PTERRIVQLLLKIIFEDYKEAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 202

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++     F + +P   +     +  +  Q+ +++           +   ++V ID  + 
Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATVV 262

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             + TL+DV+  K G VIP         IL       Y C++G+  +N  ++I ++I   
Sbjct: 263 EHQVTLRDVLEFKAGDVIPVELP--EHIILKVEDLPTYRCKMGKTKENLALKICEQIQRP 320

Query: 308 Q 308
           +
Sbjct: 321 E 321


>gi|322833203|ref|YP_004213230.1| flagellar motor switch protein FliM [Rahnella sp. Y9602]
 gi|321168404|gb|ADW74103.1| flagellar motor switch protein FliM [Rahnella sp. Y9602]
          Length = 340

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 94/308 (30%), Gaps = 10/308 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 37  DDGVKPFDPTTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIK 90

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L           + +LV   ++NL G       ++  R 
Sbjct: 91  IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 150

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ KR +           S   + S        +     N     N+ V T   
Sbjct: 151 FTHTEQRVIKRMLRLALDAYEDAWSGVYKLSVEYVRAE-LQIKFTNITSSPNDIVVTTPF 209

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I  ++  F + IP   +     +  +     S N+     +    +  Q  + +   
Sbjct: 210 HVEIGALSGDFNICIPFSMIEPLRELLTNPPVENSRNEESQWRENLVHQVQQSELELVAN 269

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  ++ LK G V+P         I   +G  + + + G + + Y +R+   IN
Sbjct: 270 FVEIPLRLSQILKLKPGDVLPIEKP--DRLIAHVDGVPVLTSQYGTLNEQYALRVEHLIN 327

Query: 306 FDQKSLKN 313
               SL  
Sbjct: 328 PILNSLDE 335


>gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13]
          Length = 332

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 111/312 (35%), Gaps = 13/312 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ ++  K           R        K   +  + +   + + L   F  ++   + I
Sbjct: 28  LKKENQEKKVKVYDFKRALRF------SKDQIRNLTRIHENFARLLTTYFSAQLRTYIQI 81

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S  S     +   I S  +  + +   ++       +  +  +   +L+  LG     + 
Sbjct: 82  SVASVDQLPYEEFIRSIPKMTILNVFEVAPLEGRVVLEINPTIAYAMLDRQLGGKGTGVN 141

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++ +  L+ +E KL             +   T  +  P L D       +       NE 
Sbjct: 142 KVDS--LTEIETKLMTTLFEGAIENFGEAWDTIADIQPFLSDLEV--NPQFLQLVSPNET 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  I+MN+TI  V     + IP   L             + K++ + +  I    +    
Sbjct: 198 VIVISMNITIGEVTGMINICIPHVVLEPVIPKLSAHYWMEEKNKVRQDHEIATLEKAIRA 257

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + + T +   + +  D++ + IG V+P   +     I+  + K  +  ++G+V KN  
Sbjct: 258 TALTVTTELGHSEISFSDLLNITIGDVLPLQQKIDEPIIVKVDNKPSFYGQVGQVKKNMA 317

Query: 298 IRITDRINFDQK 309
           ++I ++I    +
Sbjct: 318 VQILEKIKEGYE 329


>gi|15642125|ref|NP_231757.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586821|ref|ZP_01676603.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80]
 gi|121727171|ref|ZP_01680338.1| flagellar motor switch protein FliM [Vibrio cholerae V52]
 gi|147675314|ref|YP_001217648.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
 gi|153213269|ref|ZP_01948681.1| flagellar motor switch protein FliM [Vibrio cholerae 1587]
 gi|153803040|ref|ZP_01957626.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3]
 gi|153818973|ref|ZP_01971640.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457]
 gi|153822893|ref|ZP_01975560.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|153825557|ref|ZP_01978224.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2]
 gi|153828607|ref|ZP_01981274.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39]
 gi|227082251|ref|YP_002810802.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2]
 gi|229507789|ref|ZP_04397294.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286]
 gi|229511974|ref|ZP_04401453.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|229513777|ref|ZP_04403239.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21]
 gi|229519110|ref|ZP_04408553.1| flagellar motor switch protein FliM [Vibrio cholerae RC9]
 gi|229528862|ref|ZP_04418252.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)]
 gi|229607334|ref|YP_002877982.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236]
 gi|254226360|ref|ZP_04919949.1| flagellar motor switch protein FliM [Vibrio cholerae V51]
 gi|254291362|ref|ZP_04962155.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226]
 gi|254849211|ref|ZP_05238561.1| flagellar motor switch protein FliM [Vibrio cholerae MO10]
 gi|255745135|ref|ZP_05419084.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101]
 gi|262153475|ref|ZP_06028605.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1]
 gi|262167485|ref|ZP_06035191.1| flagellar motor switch protein FliM [Vibrio cholerae RC27]
 gi|262191375|ref|ZP_06049565.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93]
 gi|298497852|ref|ZP_07007659.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757]
 gi|9656676|gb|AAF95271.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548988|gb|EAX59027.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80]
 gi|121630416|gb|EAX62809.1| flagellar motor switch protein FliM [Vibrio cholerae V52]
 gi|124116069|gb|EAY34889.1| flagellar motor switch protein FliM [Vibrio cholerae 1587]
 gi|124121438|gb|EAY40181.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3]
 gi|125621110|gb|EAZ49455.1| flagellar motor switch protein FliM [Vibrio cholerae V51]
 gi|126510468|gb|EAZ73062.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457]
 gi|126519589|gb|EAZ76812.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|146317197|gb|ABQ21736.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
 gi|148875878|gb|EDL74013.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39]
 gi|149740708|gb|EDM54807.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2]
 gi|150422692|gb|EDN14646.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226]
 gi|227010139|gb|ACP06351.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2]
 gi|227014022|gb|ACP10232.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
 gi|229332636|gb|EEN98122.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)]
 gi|229343799|gb|EEO08774.1| flagellar motor switch protein FliM [Vibrio cholerae RC9]
 gi|229348958|gb|EEO13915.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21]
 gi|229351939|gb|EEO16880.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|229355294|gb|EEO20215.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286]
 gi|229369989|gb|ACQ60412.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236]
 gi|254844916|gb|EET23330.1| flagellar motor switch protein FliM [Vibrio cholerae MO10]
 gi|255736965|gb|EET92361.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101]
 gi|262024057|gb|EEY42752.1| flagellar motor switch protein FliM [Vibrio cholerae RC27]
 gi|262030712|gb|EEY49346.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1]
 gi|262032750|gb|EEY51298.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93]
 gi|297542185|gb|EFH78235.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757]
 gi|327484654|gb|AEA79061.1| Flagellar motor switch protein FliM [Vibrio cholerae LMA3894-4]
          Length = 349

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            + +        R+                +   + + L       +    ++S    Q 
Sbjct: 32  PSATNFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 85

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF    ++       +            +     LV  L+EN  G       ++  R  
Sbjct: 86  MKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREF 145

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++ +  +  + A   +  S         E                 E +   + +
Sbjct: 146 TPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 203

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + ++     F +++P   +     +  +  Q+               +   + VN    +
Sbjct: 204 VEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNL 263

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L+D++ L++G VIP        A++       Y  ++GR G+   ++++++I  
Sbjct: 264 LEMDIALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKR 321

Query: 307 DQ 308
             
Sbjct: 322 PD 323


>gi|15615009|ref|NP_243312.1| flagellar motor switch protein FliM [Bacillus halodurans C-125]
 gi|10175066|dbj|BAB06165.1| flagellar motor switch protein [Bacillus halodurans C-125]
          Length = 330

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 104/285 (36%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  S +   + + L   F  ++   V IS  S     +   I S  +  + +   
Sbjct: 48  SKDQIRSISRIHENFARLLTTYFSAQLRTFVQISVASVDQLPYEEFIRSIPKMTILNVFE 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
            +     F I  + N+   +L+ LLG    ++ ++ N  L+ +E ++  +   +      
Sbjct: 108 PAPLDGRFLIEVNPNVAYAMLDRLLGGQGVSVNKVDN--LTEIETRIMSQLFQRTLDSFQ 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  ST  E  P ++        +       NE V  I+++ TI   +    + +P   L 
Sbjct: 166 EAWSTVIELEPEMDAVEV--NPQFLQMVSPNETVVVISLSTTIAETSGMINICLPHVVLE 223

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           +           Q K + +    +D    +  Q  + I T +   + T+ + + L IG V
Sbjct: 224 EVLPKLSVHYWMQEKKKQRQPGELDSIEHRVRQAPLLIQTELGRSEITIHEFLHLGIGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I           +   G   Y  + G+   +  +++TD I    +
Sbjct: 284 IELDQSIHEPLNVRVGGHLKYLAQPGKKKNHLAVQVTDVIEEAAE 328


>gi|310767337|gb|ADP12287.1| flagellar motor switch protein [Erwinia sp. Ejp617]
          Length = 336

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 33  DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L        +  S +LV   ++NL G       ++  R 
Sbjct: 87  IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +       ++                 +     N     N+ V T   
Sbjct: 147 FTHTEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I N+   F + IP   +       ++     S  + E+  D   ++     + +   
Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVAN 265

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  +  ++ LK G V+P         I   +G  + + + G + K Y +R+   IN
Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323

Query: 306 F 306
            
Sbjct: 324 P 324


>gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
 gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
          Length = 322

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 89/277 (32%), Gaps = 6/277 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q    L +  
Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFIDLKEAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                 +   E                +E V     ++ ++       + +P   +    
Sbjct: 169 QAIMPVN--FEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++Q E  +         ++V +   +  ++  L+DV+ ++ G VIP   
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVSVPLSATVARRQLKLRDVLHMQPGDVIPVEL 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +L ANG   +   LG    N  ++I D I  
Sbjct: 287 P--EHLVLRANGVPSFKARLGSHKGNLALQIIDPIER 321


>gi|91223552|ref|ZP_01258817.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01]
 gi|269965696|ref|ZP_06179809.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
 gi|91191638|gb|EAS77902.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01]
 gi|269829764|gb|EEZ84000.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
          Length = 348

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 85/295 (28%), Gaps = 11/295 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            I     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  +     +  S         E                 E +   + ++ ++ 
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +     VN    +  K  
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +L+D++ L+ G +IP        A +       Y  ++GR      ++I++ I  
Sbjct: 269 SLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYRVKMGRSEDKLAVQISEEIER 321


>gi|42524697|ref|NP_970077.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus
           HD100]
 gi|39576907|emb|CAE78136.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus
           HD100]
          Length = 333

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 95/306 (31%), Gaps = 10/306 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G+   +           R+                +   + +         +     I+ 
Sbjct: 36  GKVDERKIVSYDLTSQDRIIRG------RLPQLEVIYEKFMRAFRVSLSSALRKIASITL 89

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
           TS +  KF   I++       S     +   +      + L   L+++  G +     ++
Sbjct: 90  TSTEFLKFGEFINTLPMPTCMSVLRFGNLRGSALFVIESKLAYALVDSFFGGADRPYTKI 149

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             +  + +E  + ++ +      +    ++ ++   +          +        + V 
Sbjct: 150 DGKDFTPIELSIVQKVVGLAINDMEMAWASIEKIGCSFVR--TEVNPQFVGIVPPTDVVI 207

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSED-LIDPFARKTYQLNV 240
               ++ +EN   +  ++IP  T+           Q +++   +         +  + ++
Sbjct: 208 ASTFDVELENATGTISIVIPYATIEPIKQKLQTGFQVETDQTDKKLWTAIIQEQLLETDM 267

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            I   +   +  LKD++ LK+G VIP          ++  G   +    G       +++
Sbjct: 268 EIKVNLGETEIKLKDLMNLKVGDVIPLDQDASGEFDVAVEGVRKFKGYYGIHHGTVAVQV 327

Query: 301 TDRINF 306
           T  +  
Sbjct: 328 TRPVEK 333


>gi|288553053|ref|YP_003424988.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4]
 gi|288544213|gb|ADC48096.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4]
          Length = 330

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 104/285 (36%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   + + L   F  ++   V IS  S     +   I S  +  + +   
Sbjct: 48  SKDQVRSLTRIHENFARLLTTYFSAQLRTFVQISVASVDQLPYEEFIRSIPKMTILNVFE 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                    +  + N+   +L+ LLG    +I ++ N  L+ +E ++  +   +      
Sbjct: 108 PYPLEGRLLMEVNPNVAYAMLDRLLGGKGISINKIEN--LTEIETRIMSQLFQRTLDSFE 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S+  E  P +E+       +       NE V  I+++ TI   +    + +P   L 
Sbjct: 166 EAWSSVVEMDPVMEEIEV--NPQFLQMVSPNETVVVISLSTTIAETSGMINICLPHVVLE 223

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           +           Q K +       +    K  +  + I + +   + T+ + + L  G V
Sbjct: 224 EVLPKLSVHYWMQEKKKQHQPGEKEAIEAKIKKAPLLIQSELGRSEITINEFLQLGEGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I          +++  G++ +  + G++     +++TD I   + 
Sbjct: 284 IELDQLINEPLLVTVEGEKKFYAQPGKMKNKMAVQVTDVIEEAED 328


>gi|304438436|ref|ZP_07398376.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368519|gb|EFM22204.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 333

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 94/286 (32%), Gaps = 8/286 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    L   + + L       +   +DI   S +   +   + S     V    +
Sbjct: 49  SKDQMRTLFMLHESFSRLLNTYLSASLRTMIDIEVLSVEQMTYQEFVQSMANPSVIGILA 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L     N  I  S ++ +  ++ + G       +   R L+ +E  + +R I  ++    
Sbjct: 109 LPPLKGNIIIELSTDISLAYIDRIFGGEGRPGVKP--RVLTDIEAAVMRRFIDTVTNYFR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   E  PN E        +       ++ V  I +++ +  V     + IP   L 
Sbjct: 167 EAWSNVVEFRPNFETMET--NPQFAQIVPPSDMVVLITIHIKMGEVEGMMNICIPYLVLE 224

Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
                  +S     +     S + +    RK  + +V    ++     T+ + +TL  G 
Sbjct: 225 PVMSKLTTSFWVASSMDRESSPEQVAELQRKIERTSVPFTVQLGEIHVTINEFLTLGFGD 284

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+      K   +        +    G  GK   ++I+  I  +  
Sbjct: 285 VLQLDTLTKDELVCYVGSNPKFLARPGTAGKRMAVQISGIIEGEDD 330


>gi|251797432|ref|YP_003012163.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2]
 gi|247545058|gb|ACT02077.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2]
          Length = 333

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 104/312 (33%), Gaps = 13/312 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ + + +           R        K   +  + +   + ++L   F  ++   V I
Sbjct: 27  LKKEEVTRKVRVYDFKRATRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +    +   +   I S  +  + +            +    N+   +L+ +LG       
Sbjct: 81  NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRMLGGQGMAPS 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++ N  L+ +E  + +R  A+    L +   T  + SP LE        +       NE 
Sbjct: 141 KINN--LTEIETIIMERIFARAFESLQEAWKTVIDISPRLEALET--NPQFMQIVSPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           +  I+++  I +      L IP   +              ++ + +  + ++   ++  +
Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVIEPIMPRLSAHHWFVSQKKERIPEEVEMLEQRVSK 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + I   +     T+K+ + L +G VI           +    K  +    G V     
Sbjct: 257 AKLPIVAELGESVITIKEFLGLAVGDVISLNKPIDDGLRIKVGEKLKFIGSPGSVKDRIA 316

Query: 298 IRITDRINFDQK 309
           +++   ++   +
Sbjct: 317 VQVDLVVSEGAE 328


>gi|254228441|ref|ZP_04921867.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
 gi|262393595|ref|YP_003285449.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
 gi|151939029|gb|EDN57861.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
 gi|262337189|gb|ACY50984.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
          Length = 348

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 85/295 (28%), Gaps = 11/295 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            I     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  +     +  S         E                 E +   + ++ ++ 
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +     VN    +  K  
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +L+D++ L+ G +IP        A +       Y  ++GR      ++I++ I  
Sbjct: 269 SLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYRVKMGRSEDKLAVQISEEIER 321


>gi|157376191|ref|YP_001474791.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3]
 gi|157318565|gb|ABV37663.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3]
          Length = 341

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 92/301 (30%), Gaps = 11/301 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + + L       M    ++S    Q  
Sbjct: 30  DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 83

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +    S       I     LV  L++N  G       ++  R  +
Sbjct: 84  KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 143

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +  +  I        +   +     +                 E V   + ++
Sbjct: 144 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 201

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++     F + +P   +     +  +  Q+ +++           +   ++V ID  I 
Sbjct: 202 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALKDEIMDVDVGIDATIV 261

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             + TLKDV+  K G VI          ++       Y C+LG    N  +RI + I   
Sbjct: 262 EHQVTLKDVMEFKQGDVITVELP--EHIVMRVEDLPTYRCKLGTARDNLALRICETIPRP 319

Query: 308 Q 308
           +
Sbjct: 320 E 320


>gi|292487985|ref|YP_003530862.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
 gi|292899205|ref|YP_003538574.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291199053|emb|CBJ46164.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291553409|emb|CBA20454.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
          Length = 336

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 33  DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L        +  S +LV   ++NL G       ++  R 
Sbjct: 87  IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +       ++                 +     N     N+ V T   
Sbjct: 147 FTHTEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I N+   F + IP   +       ++   ++   + E+  D   ++     + +   
Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVAN 265

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  +  ++ LK G V+P         I   +G  + + + G + K Y +R+   IN
Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323

Query: 306 F 306
            
Sbjct: 324 P 324


>gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 332

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 98/284 (34%), Gaps = 6/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       +   V+++  S     +    +S       +   
Sbjct: 50  SKEQLRTLQMIFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIID 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
            +     F +  +NN    +L+ +LG   +   +L +R  + +E  L  + + QI  +  
Sbjct: 110 AAPLEGPFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQILPLFK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   + +P+L         +       NE V    +++ I          +P  TL 
Sbjct: 168 EPWSNILDINPSLIRVET--NSQFAQIISPNETVALCTLSIKINETEGIMNFCMPHLTLE 225

Query: 208 KTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +    +  + + +   +    K  +  + +  ++     T+K+ + L+IG +I
Sbjct: 226 PIVPKLTTKFWFSSMKKEDKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLELEIGDII 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 K    +  + K  +    G     Y++RIT+ I    +
Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329


>gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
           B316]
 gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
           B316]
          Length = 327

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 100/310 (32%), Gaps = 13/310 (4%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
             +  K          A+        K   +    +   Y + L       +  +V +S 
Sbjct: 28  QAADEKKVKDYDFKRPAKF------SKEHLRTLEMIYEHYGRLLSTTLPLYLRKNVQVSV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + ++  +S   ++     +    +         +    N+  + ++ +LG    T+ + 
Sbjct: 82  ANSETVTYSEFSNALSNPVILGVINFLPLQGTIILELQANIGFSFIDRMLGGEGGTLDKP 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  + +E  L ++ +     ++ +        +P +E        +        + + 
Sbjct: 142 --RPFTDIEMPLIEKLVTICMQLMVEPWQNVVAINPVMERIET--NPQFAQVISPTDMIA 197

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLN 239
            + +N+ I +      + +P  TL                 +N  ED  D       +++
Sbjct: 198 IVTLNIKIGDTEGLMNVCLPYFTLESVMDKLNTKFWFSTMQKNADEDYEDTLESMVKRVD 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +     ++ D V L+ G +I   +R  T   +       ++   G     Y +R
Sbjct: 258 VPVKAILGKCNVSVSDFVHLQAGDIIRLDNRVNTDMQVYVGNIFKFTALPGTAKDKYAVR 317

Query: 300 ITDRINFDQK 309
           IT  +  + +
Sbjct: 318 ITSVVREEDE 327


>gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 325

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 96/303 (31%), Gaps = 13/303 (4%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                        R+            +   +   + +         M   VDI+  S  
Sbjct: 32  DSGVVSFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALANTMRKRVDINPISID 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF   + S       S   +     N  +   + LV  L+EN  G +     ++  R 
Sbjct: 86  MSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGSQP-KVEGRD 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E+ + +R +    A + +      E    L         +       ++ V  +  
Sbjct: 145 FTPIEQAIVERVVKIALANMEESWKPVHEVHVELVR--TEVNPQFAAIVPPSDVVIVVTF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +EN   S ++ +P  T+         S Q++        I+ F  +  +  V +  R
Sbjct: 203 EVELENAIGSLIVCLPYATMEPIRSKLHASFQSERLEVDHVWINRFKERLMETPVEMVIR 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     + + ++ L+ G +I     E         G   +    GRV  N + ++   I 
Sbjct: 263 MGRTTISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKFQGLPGRVKGNKSFQV---IK 319

Query: 306 FDQ 308
            ++
Sbjct: 320 EEE 322


>gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 330

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 99/284 (34%), Gaps = 6/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   + + L       +   V+++  S     +    +S       +   
Sbjct: 48  SKEQLRTLQMIFENFSRSLTSFLSGYLRTIVNVAVVSVDQLTYYEFSNSLNNPVFIAIID 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
            S     F +  +NN    +L+ LLG   +   +  +R  + +E  L  + + QI  +L 
Sbjct: 108 ASPLEGPFLLELNNNTTYAILDRLLGGMGK--GEFLDRDYTEIEVNLLTKIVKQILPLLE 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   + +P+L         +       NE V    +++ I          +P  TL 
Sbjct: 166 EPWSNIIDLTPSLMRVET--NSQFAQIISPNETVALCTLSIKINETEGMMNFCMPHLTLE 223

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +    +  + + +   +    K  +  + +  ++     T+ D++  ++G VI
Sbjct: 224 PIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTYIPLTVQLGSTTVTVGDLLKFEVGDVI 283

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
               R      +  + K  +    G   K Y+++IT+ I    +
Sbjct: 284 MLDKRYNEPVEVIIDKKVKFKGIPGIKSKRYSVKITEVIYKGDE 327


>gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
 gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
          Length = 332

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++              R+                +   + ++        +  + D+S  
Sbjct: 27  ETDDTGVKNYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRNADVSTG 80

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             Q  KF   IH+       +   +              LV  L++N  G       ++ 
Sbjct: 81  GVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGR-HAKIE 139

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E ++ +  + Q+   + +      +     E                +E V  
Sbjct: 140 GREFTPTETRIVQMVLNQVFHDMKEAWHAVLQVE--FEYLSSEVNPAMANIVSPSEVVVV 197

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              ++ ++         +P   +     +  +  Q+  ++  E  ++       ++NV I
Sbjct: 198 STFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDERWVNALQEDIKEVNVPI 257

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +T +  ++ +L+D+  +K G VIP          ++ANG  IY   LG       +RI D
Sbjct: 258 NTTVCRRRISLRDIARMKAGDVIPVEIP--EHLTVTANGIPIYKATLGTRDGKLALRIHD 315

Query: 303 R 303
           R
Sbjct: 316 R 316


>gi|307264879|ref|ZP_07546441.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920137|gb|EFN50349.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 332

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 97/284 (34%), Gaps = 6/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       +   V+++  S     +    +S       +   
Sbjct: 50  SKEQLRTLQMIFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIID 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
            +     F +  +NN    +L+ +LG   +   +L +R  + +E  L  + + QI  +  
Sbjct: 110 AAPLEGPFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQILPLFK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   + +P+L         +       NE V    +++ I          +P  TL 
Sbjct: 168 EPWSNILDINPSLIRVET--NSQFAQIISPNETVALCTLSIKINETEGMMNFCMPHLTLE 225

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +    +  + + +   +    K  +  + +  ++     T+K+ +  +IG +I
Sbjct: 226 PIVPKLTTKFWFSSMKKEDKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLEFEIGDII 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 K    +  + K  +    G     Y++RIT+ I    +
Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329


>gi|260886644|ref|ZP_05897907.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
 gi|330839524|ref|YP_004414104.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
 gi|260863787|gb|EEX78287.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
 gi|329747288|gb|AEC00645.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
          Length = 334

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 102/290 (35%), Gaps = 8/290 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + L   + + L       +   V++   S +   +   + S     V    +
Sbjct: 49  SKDQIRTLNMLYENFARLLNTHLSTHLRTMVNVEVVSVEQLTYQEFLQSLSNPSVIGVMA 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L     N  +  +  +    ++ + G   E   +   R L+ +E+ + ++ IA+ S  L 
Sbjct: 109 LPPLKGNIIMEVNTGIAFAYIDRVFGGLGENTLKP--RILTEIEEAVMRKFIAKASEFLK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   E +P LE                ++ V  + + + I  V     L IP   L 
Sbjct: 167 ESWSNVIEINPILEAIEA--NPGFVQIVPPSDMVIIVTVQVKIGEVEGFMTLCIPYLVLE 224

Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
                  +S     + +++ + D I    +K ++  + +   +     T+++ +TL  G 
Sbjct: 225 PVMSKLSTSFWVAASVAKDNNPDKIRALEKKIHKSPIPLIVELGTIDMTIREFLTLGFGD 284

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           V+    + K    +    K  + C  G  GK   ++IT       +    
Sbjct: 285 VLQLDTKVKDELKILVGQKPKFLCRPGTQGKRSAVQITQVAFEGDEDTDE 334


>gi|270262388|ref|ZP_06190659.1| flagellar motor switch protein FliM [Serratia odorifera 4Rx13]
 gi|270043072|gb|EFA16165.1| flagellar motor switch protein FliM [Serratia odorifera 4Rx13]
          Length = 333

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S      P  P    R+       +        +   + +         +    DI+   
Sbjct: 29  SNESEVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L+          + +LV   ++NL G       ++  
Sbjct: 83  IRIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ KR +           S   + +        +     N     N+ V T 
Sbjct: 143 REFTPTEQRVIKRMLRLALDAYGDAWSAIYKINVEYVRAE-MQVKFTNITTSPNDIVVTT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
              + I  ++  F + IP   +     +  +   + S  +     +   ++     + + 
Sbjct: 202 PFQVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSQWRETLVKQVQHSELELI 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   
Sbjct: 262 ANFVDIPMRLSKILKLQPGDVLPIDKP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHL 319

Query: 304 INF 306
           IN 
Sbjct: 320 INP 322


>gi|258621111|ref|ZP_05716145.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|262170887|ref|ZP_06038565.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451]
 gi|258586499|gb|EEW11214.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|261891963|gb|EEY37949.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451]
          Length = 349

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + L       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            +     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  + A   +  S         E                 E +   + ++ ++ 
Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +   + VN    +     
Sbjct: 209 GGGDFHMVMPYSMMEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            L+D++ L++G VIP        A++       Y  ++GR G+   ++++++I    
Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|86356304|ref|YP_468196.1| flagellar C-ring protein [Rhizobium etli CFN 42]
 gi|86280406|gb|ABC89469.1| flagellar C-ring protein [Rhizobium etli CFN 42]
          Length = 316

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 166/305 (54%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
            + P LLA+LTG LGD+  + KI S+ G +Y +FLP I K +  LDV +SY  C+ G  +
Sbjct: 12  AMDPALLAKLTGGLGDRGRVAKICSAFGDVYGEFLPDIIKSETGLDVTVSYLGCEIGYKN 71

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
           H++     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI +   R LS +E
Sbjct: 72  HLVDDLSHNVTLVDATLRNWSQNVTLACGNGFVITLMEHLLGATADTIEEPAERLLSVIE 131

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             LA     +I+ VL   ++      P+L   +  D   +      +EF   INM++T+ 
Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPAEDKPDEFAAAINMSITLA 191

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            + S F LIIPQ  LLKT +     + ++   S +  +    +  + +V ++ +I L+  
Sbjct: 192 GIVSEFSLIIPQTALLKTKVTPPKPKRQTGGNSPEWTEQLGDQVRRSHVTLEAKIRLQDL 251

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           TL+ +  L  G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 252 TLRTISKLMAGDVIPFHDSGDVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELI 311

Query: 312 KNFLH 316
           ++ ++
Sbjct: 312 RHLMN 316


>gi|104782811|ref|YP_609309.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48]
 gi|95111798|emb|CAK16522.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48]
          Length = 322

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 87/277 (31%), Gaps = 6/277 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q    L +  
Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                 +   E                +E V     ++ ++       + +P   +    
Sbjct: 169 QAIMPVN--FEYINSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++Q E  +         + V +   +  ++  L+D++ ++ G VIP   
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMSATVARRQLKLRDILHMQPGDVIPVEL 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +L ANG   +   LG       ++I D I  
Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGTLALQIIDPIER 321


>gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040364|gb|ACT57160.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 318

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI
Sbjct: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP
Sbjct: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF
Sbjct: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
           VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV
Sbjct: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI
Sbjct: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300

Query: 301 TDRINFDQKSLKNFLHKR 318
           TDRINFDQKSLKNFLHKR
Sbjct: 301 TDRINFDQKSLKNFLHKR 318


>gi|229524128|ref|ZP_04413533.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis
           VL426]
 gi|297582024|ref|ZP_06943943.1| flagellar motor switch protein FliM [Vibrio cholerae RC385]
 gi|229337709|gb|EEO02726.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis
           VL426]
 gi|297533719|gb|EFH72561.1| flagellar motor switch protein FliM [Vibrio cholerae RC385]
          Length = 349

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + L       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            +     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  + A   +  S         E                 E +   + ++ ++ 
Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +   + VN    +     
Sbjct: 209 GGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            L+D++ L++G VIP        A++       Y  ++GR G+   ++++++I    
Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFIEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|293395596|ref|ZP_06639879.1| flagellar motor switch protein FliM [Serratia odorifera DSM 4582]
 gi|291421915|gb|EFE95161.1| flagellar motor switch protein FliM [Serratia odorifera DSM 4582]
          Length = 334

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 89/301 (29%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +        +   + +         +    DI+    +
Sbjct: 31  DSDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIR 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L+          + +LV   ++NL G       ++  R 
Sbjct: 85  IQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ KR +           S   +          +     N     N+ V T   
Sbjct: 145 FTPTEQRVIKRMLRLALDAYGDAWSAIYQIDVEYVRAE-MQVKFTNITTSPNDIVVTTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
            + I  ++  F + IP   +     +  +   + S  +     +   ++     + +   
Sbjct: 204 QVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSRWRETLVKQVQHSELELIAN 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  V+ L+ G V+P         I   +G  + + + G +   Y +R+   IN
Sbjct: 264 FVDIPMRLSKVLKLQPGDVLPIDKP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|258626185|ref|ZP_05721033.1| flagellar motor switch protein [Vibrio mimicus VM603]
 gi|258581540|gb|EEW06441.1| flagellar motor switch protein [Vibrio mimicus VM603]
          Length = 349

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + L       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            +     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  + A   +  S         E                 E +   + ++ ++ 
Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +   + VN    +     
Sbjct: 209 GGGDFHMVMPYSMMEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            L+D++ L++G VIP        A++       Y  ++GR G+   ++++++I    
Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|89094448|ref|ZP_01167388.1| flagellar motor switch protein [Oceanospirillum sp. MED92]
 gi|89081340|gb|EAR60572.1| flagellar motor switch protein [Oceanospirillum sp. MED92]
          Length = 325

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 97/303 (32%), Gaps = 12/303 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +          R+                +   + ++        +    D++    Q
Sbjct: 34  EGDVRTYDLASHERIVRG------RMPTLEMVNERFARYTRISLFNLLRRAADVTVGGVQ 87

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             K+   IH+       +   ++             LV  L++N  G       ++  R 
Sbjct: 88  VMKYGDYIHTLYVPTSMNLIRVNPLRGTALFIMDAKLVFKLVDNFFGGDGR-HAKIEGRE 146

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E +L  + + Q    L +  +  +E   + +                 E V     
Sbjct: 147 FTPTETRLIHKALEQFFLDLEEAWNPVKEL--SFDHLGHEMNPAMANVINPTEVVVVSTF 204

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +E  +  F + +P   L     +     Q+  + + E       R      + ++  
Sbjct: 205 QVDLEGGSGEFHVAMPYSMLEPIRDLLVSGFQSGEDEKDERWQVALQRDILMAGLPLEMT 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +  ++ TL+DVV L+ G +IP          L AN   +Y+C +G    N  +++ ++I 
Sbjct: 265 LAQQEMTLRDVVDLQAGDIIPIELP--ETFELKANKVPVYNCTMGVSRGNLAVKVVNQIE 322

Query: 306 FDQ 308
             +
Sbjct: 323 RPK 325


>gi|190890355|ref|YP_001976897.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652]
 gi|190695634|gb|ACE89719.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652]
          Length = 316

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 167/305 (54%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
            + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV ++Y  C+ G  +
Sbjct: 12  AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
           H++     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI +  +R LS +E
Sbjct: 72  HLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             LA     +I+ VL   ++      P+L   +  D   +      +EF   INM++T+ 
Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARARPPEDKPDEFAAAINMSLTLA 191

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            + S F LI+PQ  LLKT +     + ++   S +  +    +  + +V ++ RI L+  
Sbjct: 192 GIVSEFSLIVPQTALLKTKVTPPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQDL 251

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 252 TLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311

Query: 312 KNFLH 316
           ++ ++
Sbjct: 312 RHLMN 316


>gi|300871253|ref|YP_003786126.1| flagellar motor switch protein FliM [Brachyspira pilosicoli
           95/1000]
 gi|300688954|gb|ADK31625.1| flagellar motor switch protein, FliM [Brachyspira pilosicoli
           95/1000]
          Length = 343

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 102/319 (31%), Gaps = 13/319 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +  H+           +        K   +    +   + +        ++   V I   
Sbjct: 32  EVEHRKIKIYDFKRPDKF------SKDQIRTLQMMHENFARVTTTSLSAQLRTLVGIHVA 85

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S     +   I S       +  S+     +  +    ++  T+++ L G + E+  +  
Sbjct: 86  SVDQLTYEEFIRSVSNPSTLAIVSMDPLKGSSILEIDPSITFTIIDRLFGGAGESP-KNL 144

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
           NR L+ +E  + +  I +I   L +  S   +  P L         +       N+ V  
Sbjct: 145 NRELTDIELSVMEGIIVRILGNLREAWSQVIDLRPRLGSIET--NPQFAQMVSPNDMVVL 202

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNV 240
           I +   + +V       IP  T+              +     + + +     K   + V
Sbjct: 203 ITLETKVADVEGMMNFCIPYITIEPILSKFSAQYWYASVRRGSTSENLKIIKEKLQNIYV 262

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                +   +  L D++ L+ G V+ F   +     I     ++ + C  G  G    ++
Sbjct: 263 ETSAELGSMQLPLSDILNLQKGDVVKFTETKITDPVIFKIGTRKKFLCRPGISGSRMAVQ 322

Query: 300 ITDRINFDQKSLKNFLHKR 318
           +T  ++ +    ++ L K 
Sbjct: 323 LTGVMDGETDITEDDLLKE 341


>gi|209547920|ref|YP_002279837.1| hypothetical protein Rleg2_0312 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533676|gb|ACI53611.1| surface presentation of antigens (SPOA) protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 316

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 167/305 (54%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
            + P LLA+LTG LGDK  + KI SS G +Y +F P + K +  L+V ++Y  C+ G  +
Sbjct: 12  AMDPALLAKLTGGLGDKGRVAKICSSFGEIYSEFFPDVIKSETGLEVTVNYLGCEIGYKN 71

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
           H+I     N      +L +WS N  I C N  VITL+E+LLGA+ +TI +  +R LS +E
Sbjct: 72  HLIDDLSSNVTLVDVTLRNWSQNITIACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             LA     +I+ VL   ++      P+L   + ++   +      +EF   INM++T+ 
Sbjct: 132 MDLAVMVFDKIAKVLRSAVNAPGGFEPSLSVPHALEMRARPPEDRPDEFAAAINMSITLA 191

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            + S F L++PQ  LLKT +     + ++   S +  +    +  + +V ++ +I L+  
Sbjct: 192 GIVSEFSLMVPQTALLKTKVTPPKPKRQAGGSSAEWTEQLGDQVRRSHVTLEAKIRLQDL 251

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 252 TLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311

Query: 312 KNFLH 316
           ++ ++
Sbjct: 312 RHLMN 316


>gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
           BON]
 gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
           BON]
          Length = 335

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 101/315 (32%), Gaps = 16/315 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M   +  K           +        K   +    L   + ++L       + +   +
Sbjct: 28  MEQTAEEKKIRVYDFRRPNKF------SKEQLRTLEILHENFCRYLSSYLAGFLRIYCQV 81

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  S +   +   ++S  E  V              +  + N+   +++ +LG S     
Sbjct: 82  NIVSVEELTYYEFMNSLPEPVVLGIMDFQPMDGKIVVEIAPNISYAMIDRVLGGSGRAAE 141

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++   + S +E  L +R + QI  +L +  +     +P LE        +       NE 
Sbjct: 142 EMT--AFSEIELALIERILRQIGTLLQESWANVAAITPKLERIET--NAQFAQIIAPNET 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKT------TLISLSSQNKSENQSEDLIDPFARK 234
              + + + + +V     + IP  T+              + + +   + E   +   ++
Sbjct: 198 AALVTLMLKVGDVEGMVNICIPHVTIEPISDELTTRFWFSNEKKEKAERDEVSFNTLRKR 257

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +     ++ D + L  G +I           +       +  + G    
Sbjct: 258 IENVQIPIRAILGESTISIGDFMQLSPGDIIQLDESVDNHIKVMVGDITKFYGKPGLRHN 317

Query: 295 NYTIRITDRINFDQK 309
           +  ++ITD I  ++ 
Sbjct: 318 HMAVKITDVIYQEED 332


>gi|260767699|ref|ZP_05876634.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972]
 gi|260617208|gb|EEX42392.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972]
 gi|315179469|gb|ADT86383.1| flagellar motor switch protein FliM [Vibrio furnissii NCTC 11218]
          Length = 352

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 32/297 (10%), Positives = 88/297 (29%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            +     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  +        +         E                 E +   + ++ ++ 
Sbjct: 151 RVIQLLLKIVFGDYKDAWAPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +   + VN    +  +  
Sbjct: 209 GGGDFHIVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEQDL 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            L+D++ L++G +IP        A +       Y  ++GR G+   ++++++I    
Sbjct: 269 ALRDLMELQVGDIIPIKMP--EHATMFVEELPTYRVKMGRSGEKLAVQVSEKIRRPD 323


>gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 316

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 168/305 (55%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
            + P LLA+LTG LGD+  + KI SS G +Y +F P + K +  LDV ++Y  C+ G  +
Sbjct: 12  AMDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
           H+I     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI +  +R LS +E
Sbjct: 72  HLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             LA     +I+ VL   ++      P+L   Y  D   +      +EF   INM++T+ 
Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEFAAAINMSITLA 191

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            + S F LI+PQ  LLKT +     + ++ + S +  +    +  + +V ++ +I L+  
Sbjct: 192 GIVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHVTLEAKIRLQDL 251

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 252 TLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311

Query: 312 KNFLH 316
           ++ ++
Sbjct: 312 RHLMN 316


>gi|37525864|ref|NP_929208.1| flagellar motor switch protein FliM [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785293|emb|CAE14234.1| Flagellar motor switch protein FliM [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 334

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 91/313 (29%), Gaps = 10/313 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
              S      P  P    R+       +   +    +   + +         +    DI+
Sbjct: 26  NTSSGENEIRPYDPNTQRRVI------RERLQALEIINERFARHFRMGLFNMLRRSPDIT 79

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   L           + +LV   ++NL G       +
Sbjct: 80  VGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFAPSLVYIAVDNLFGGDGRFPTK 139

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++  R +           S   +          +     N     N+ V
Sbjct: 140 VEGREFTHTEQRVINRMLRMALDSYRDAWSAIFKIEVEYIRSE-MQVKFTNITTSPNDIV 198

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240
            T    + I  ++  F + IP   +        +   + +  +     +   ++     +
Sbjct: 199 VTTPFQVEIGALSGEFNICIPFAMIEPLRERLTNPPLENARQEDSLWRESLVKQVQHSEL 258

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          L  ++ L+ G ++P         I+  +G  + + + G +   Y +R+
Sbjct: 259 ELVANFADIPLRLSKILQLQPGDILPIDKP--ERLIVHVDGVPVLTSQYGTLNGQYALRV 316

Query: 301 TDRINFDQKSLKN 313
              IN    +L  
Sbjct: 317 EHLINPVLNALDE 329


>gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 330

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 104/312 (33%), Gaps = 13/312 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +R +   K           +        K        +   Y + +      ++   V I
Sbjct: 27  LRQEQTKKKIRLYDFRRPNKF------SKDQLHTLQVIFENYSRSVSTYLSAQLRAAVQI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
              S +   +   + S     +    SL     +  +  + NL   +L+ +LG       
Sbjct: 81  DVLSVEQLTYDEFMRSLPNPTIMCVFSLQPLEGSAIMEINPNLGFAMLDRILGGPGLPPE 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R L+ +E  L +R   ++ + L +  S   E  P ++        +       +E 
Sbjct: 141 RI--RPLTEIEITLIERLAQRMLSYLEEPWSGIIELQPVMDRIE--SNPQFTQIVSPSEM 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP---FARKTYQ 237
           V  I++   I +V S   + IP   L   T     +   S +  E   D       +   
Sbjct: 197 VVIISLESKIGDVLSLINICIPFLVLESITGKLNVNYYYSSSVKERSKDSALVLKNRIEN 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   I     T+++++ L  G VIP   R      +    K  +  + G VG    
Sbjct: 257 AMVPVKILIGSTVITVRELLELAPGDVIPLERRLDEDLEVVIGQKPKFRGKPGVVGNRLA 316

Query: 298 IRITDRINFDQK 309
           ++IT+ ++    
Sbjct: 317 LKITEIVSEVDD 328


>gi|94986472|ref|YP_594405.1| flagellar motor switch protein [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730721|emb|CAJ54083.1| Flagellar motor switch protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 325

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 93/303 (30%), Gaps = 13/303 (4%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P       R+            +   +   + +         +   V+++  S  
Sbjct: 32  DSGIVPFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAIRKRVELNPISID 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF   + S       +   +     N  I   + LV  L+EN+ G       ++  R 
Sbjct: 86  MTKFGDFMRSLPVPTSINIFKMDPLRGNAIIVVDSRLVFALVENVFGGIGSQP-KIEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E+ +  R I      + +      +    LE        +       ++ V  IN 
Sbjct: 145 FTRIEQVIVDRIIKIALDNMEESWRPVHDVK--LELIRSEINPQFAAIVPPSDVVIVINF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +++   S  + IP  T+         S Q +        +     +  +  V +  R
Sbjct: 203 EVELDSSIGSMTICIPYATIEPIRSKLHASFQTERLEIDHAWVGRLKERLLETPVELKVR 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + T   ++ LKIG V+      +     +  G   Y    G V  N   +I   I 
Sbjct: 263 MGNTQITGNQLLRLKIGDVLVLDTDVEDLLECTVAGVTKYWGIAGTVKSNKAYQI---IK 319

Query: 306 FDQ 308
            ++
Sbjct: 320 EEE 322


>gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
           1873]
 gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
           1873]
          Length = 331

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 100/285 (35%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   + + +      ++  +V I   + Q   +   IHS     + +   
Sbjct: 48  SKDHIRTLELIHDNFARIISNYLTAQVRTNVKIKIETVQQITYEEFIHSVPNPTILTIFK 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +   S +     +      +++ LLG       +   R  + ++K + K+    + A L 
Sbjct: 108 MPPLSGSILFETNPQFAYKVIDVLLGGPGVGQYKT--REFTDIDKNIIKQINKGLIANLK 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                  +  P +E          N     NE V  I  ++ +   ++   + IP  ++ 
Sbjct: 166 LAWEDVIQVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIE 223

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           K           +    +  E   +   ++   + + +   +   K T+ + +TL +G V
Sbjct: 224 KVLDKLVVQYWFRENDTDTLEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +   +   +   +    K     + G +GKN  ++I D I+ D +
Sbjct: 284 VTLDNLTSSPVKMMVGDKPYLLGKPGIIGKNRGVQILDIIDKDVE 328


>gi|188534127|ref|YP_001907924.1| flagellar motor switch protein FliM [Erwinia tasmaniensis Et1/99]
 gi|188029169|emb|CAO97041.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
          Length = 336

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 94/306 (30%), Gaps = 10/306 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
             +    +  P  P    R+       +   +    +   + +         +    DI+
Sbjct: 28  NKKEGEDHIRPYDPNTQRRVV------RERLQALEIINERFARAYRMALFNLLRRSPDIT 81

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   L        +  S +LV   ++NL G       +
Sbjct: 82  VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 141

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++  R +       ++                 +     N     N+ V
Sbjct: 142 VEGREFTHTEQRVIGRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIV 200

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNV 240
            T    + I N+   F + IP   +       ++   ++  +Q E   D   ++     +
Sbjct: 201 VTTPFQVEIGNLTGEFNICIPFSMIEPLRETLVNPPLENSLSQDETWRDTLVKQVQHSEL 260

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          +  ++ LK G V+P         I   +G  + + + G + K + +R+
Sbjct: 261 ELVANFADVSMRISRLLALKPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNKQFALRV 318

Query: 301 TDRINF 306
              IN 
Sbjct: 319 EHLINP 324


>gi|332994114|gb|AEF04169.1| flagellar motor switch protein FliM [Alteromonas sp. SN2]
          Length = 352

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 11/300 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              +T         R+                +   + + +       M    ++S    
Sbjct: 30  SDASTLEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGI 83

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           Q  KF   IH+       +            I     LV  L++N  G       ++  R
Sbjct: 84  QMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ +  +  I     +  +   +   + E                 E V   +
Sbjct: 144 EFTPTERRIIQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISS 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ ++     F + +P   L     +  +  Q+  E+           +   + V + T
Sbjct: 202 FHIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVALTT 261

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L+ V+  K G++IP          +       +  +LGR   N  ++I ++I
Sbjct: 262 HMLDVDVSLRQVMEFKPGEIIPVEMP--ETITVLIEDLPTFRAKLGRSRDNLALKIVEKI 319


>gi|304311107|ref|YP_003810705.1| Flagellar motor switch protein [gamma proteobacterium HdN1]
 gi|301796840|emb|CBL45052.1| Flagellar motor switch protein [gamma proteobacterium HdN1]
          Length = 354

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 92/308 (29%), Gaps = 12/308 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
            G                R+                +   + ++        +    D++
Sbjct: 27  SGDDSADGIKNYDLSTQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVA 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               Q  KF   +HS       +   +              LV  L++N  G       +
Sbjct: 81  VGGVQVIKFGEYVHSLYVPTSLNMVRIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HVK 139

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E ++ +  + Q    + +            E                +E V
Sbjct: 140 IEGREFTPTENRVVQLVLKQAFKDMEEAWKAVLPVK--FEYLSSEVNPALANIVSPSEVV 197

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
                ++ ++       L +P   +     +  S  Q+   NQ E  +     +    NV
Sbjct: 198 VVNTFHIELDGGGGDLQLTVPYSMIEPLREVLDSGVQSDVGNQDERWMSSLREEIMGANV 257

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           ++  ++  +K  L ++  LK G V+          ++ AN    Y  +LG   + Y ++I
Sbjct: 258 HLRCKLLDRKIKLSELAALKTGDVLQVEMP--EHVMIYANEVPTYRGKLGTSREKYAVKI 315

Query: 301 TDRINFDQ 308
            +++   +
Sbjct: 316 AEKVQRPE 323


>gi|27365287|ref|NP_760815.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6]
 gi|37680658|ref|NP_935267.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016]
 gi|320155671|ref|YP_004188050.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O]
 gi|27361434|gb|AAO10342.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6]
 gi|37199407|dbj|BAC95238.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016]
 gi|319930983|gb|ADV85847.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O]
          Length = 347

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 88/295 (29%), Gaps = 11/295 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            I     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  +     +  S         E                 E +   + ++ ++ 
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +     VN    +  K  
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +L+D++ L+ G VIP    +   A++       Y  ++G+  +   ++I++ I  
Sbjct: 269 SLRDLMELRPGDVIPIEMPKH--AVMFVEELPTYRVKMGQSNEKLAVQISEEIER 321


>gi|238782828|ref|ZP_04626857.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
           43970]
 gi|238716251|gb|EEQ08234.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
           43970]
          Length = 332

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 99/306 (32%), Gaps = 10/306 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
             +++ +   P  P    R+       +        +   + +         +    DI+
Sbjct: 28  NNRTLDEGIKPYDPNTQRRVV------RERLHSLEIINERFARQFRIGLFNLLRRSPDIT 81

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   ++          S NLV   ++NL G       +
Sbjct: 82  AGNIKIQPYHDFARNLPVPTNLNLVHMNPLRGTALFVFSPNLVFMAVDNLFGGDGRFPTK 141

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
              R  +  E+++  R +A      +   S+  +          I     N     N+ V
Sbjct: 142 ADGREFTPTEQRVINRMLAMALEAYDFAWSSIFKLKTEYVRAE-IQVKFTNITSSPNDIV 200

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNV 240
            T    + I      F + IP   +     +  S     S  + +   +  A +  +  +
Sbjct: 201 VTTPFYVEIGPHRGEFDICIPFSIIEPLRELLTSPPMESSRQEEKQWRNTLASQVRETEL 260

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +  +     T L +++++K G VIP   +         +G  ++S + G + K Y +++
Sbjct: 261 ELVAKFADISTRLSNIMSMKEGDVIPIDKK--ESIEACVDGVPVFSGKYGYMNKQYALKV 318

Query: 301 TDRINF 306
              +N 
Sbjct: 319 EKILNP 324


>gi|241203098|ref|YP_002974194.1| surface presentation of antigens (SPOA) protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240856988|gb|ACS54655.1| surface presentation of antigens (SPOA) protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 316

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 169/305 (55%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
            + P LLA+LTG LGD+  + KI SS G +Y +F P + K +  LDV ++Y  C+ G  +
Sbjct: 12  AMDPALLAKLTGGLGDRGGVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
           H+I     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI +  +R LS +E
Sbjct: 72  HLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             LA     +I+ VL   ++      P+L   + +D   +      +EF   INM++T+ 
Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHALDARARPPEDRPDEFAAAINMSITLA 191

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            + S F LI+PQ  LLKT +     + ++  +S +  +    +  + +V ++ +I L+  
Sbjct: 192 GIVSEFALIVPQTALLKTKVTPPKPKRQATGKSPEWTEQLGDQVRRSHVTLEAKIRLQDL 251

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 252 TLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311

Query: 312 KNFLH 316
           ++ ++
Sbjct: 312 RHLMN 316


>gi|303240276|ref|ZP_07326795.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus
           CD2]
 gi|302592186|gb|EFL61915.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus
           CD2]
          Length = 329

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 98/307 (31%), Gaps = 8/307 (2%)

Query: 7   HKNTSPLHPILL-ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
           H  T+P    +            K   K  + +   Y + L       +   V ++  S 
Sbjct: 26  HMTTTPEEKKIRNHDFRRPSKFAKDHMKTLNIIHDNYARLLTNFLSGYLRTLVQVAVISV 85

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           ++  +    +S     V +    S  S +     +  +   L++ +LG     + ++  R
Sbjct: 86  EAIAYYEFNNSISNPAVLAIVDFSPLSGSIIFEMAPPIAYALIDRILGGKGSPMEKI--R 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             + VE  + +R I Q+  ++ +         P LE        +      +NE V  I 
Sbjct: 144 EFTEVELAIIERIIIQVLNLMREPWENVIAIRPRLEKIET--NAQFAQIISANEMVALIT 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242
           +   I +V     + IP   +              N  + ++ +  D    K     V +
Sbjct: 202 LGAKIGDVEGMINICIPHMVVEPIVSKLSTKFWFSNSEKEKTNESKDTIELKIENTKVPV 261

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +      + D + L+ G VIP          +       +    G       I++ +
Sbjct: 262 RAVLGRSTILVNDFLELQPGDVIPLDSSVSGNLEILVGDLLKFYGTPGVKKNRVAIKVNE 321

Query: 303 RINFDQK 309
            +  +++
Sbjct: 322 VVRGEEE 328


>gi|259908765|ref|YP_002649121.1| flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96]
 gi|224964387|emb|CAX55896.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
 gi|283478741|emb|CAY74657.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae DSM 12163]
          Length = 336

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+       +   +    +   + +         +    DI+  + +
Sbjct: 33  DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L        +  S +LV   ++NL G       ++  R 
Sbjct: 87  IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++ +R +       ++                 +     N     N+ V T   
Sbjct: 147 FTHTEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I N+   F + IP   +       ++     S  + E+  D   ++     + +   
Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVAN 265

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  +  ++ LK G V+P         I   +G  + + + G + K Y +R+   IN
Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKL--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323

Query: 306 F 306
            
Sbjct: 324 P 324


>gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
           DSM 12653]
          Length = 330

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 99/284 (34%), Gaps = 6/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   + + L       +   V+++  S     +    +S       +   
Sbjct: 48  SKEQLRTLQMIFENFSRSLTSFLSGYLRTIVNVAVVSVDQLTYYEFSNSLNNPVFIAIID 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
            S     F +  +NN    +L+ LLG   +   +  +R  + +E  L  + + QI  +L 
Sbjct: 108 ASPLEGLFLLELNNNTTYAILDRLLGGMGK--GEFLDRDYTEIEVNLLTKIVKQILPLLE 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   + +P+L         +       NE V    +++ I          +P  TL 
Sbjct: 166 EPWSNIIDLTPSLMRVET--NSQFAQIISPNETVALCTLSIKINETEGMMNFCMPHLTLE 223

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +    +  + + +   +    K  +  + +  ++     T+ D++  ++G VI
Sbjct: 224 PIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTYIPLTVQLGSTTVTVGDLLKFEVGDVI 283

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
               R      +  + K  +    G   K Y+++IT+ I    +
Sbjct: 284 MLDKRYNEPVEVIIDKKVKFKGIPGIKSKRYSVKITEVIYKGDE 327


>gi|312884904|ref|ZP_07744594.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367381|gb|EFP94943.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 348

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 11/302 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           + +         R+                +   + + L       +    ++S    Q 
Sbjct: 31  EGSVDFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 84

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF    ++       +            +     LV  L+EN  G       ++  R  
Sbjct: 85  MKFGEYQNTLYVPTSLNMVRFRPLKGTGLVTMEARLVFILVENFFGGEGRYHSRIEGREF 144

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++ +  +  I     +  S         E                 E +   + +
Sbjct: 145 TPTERRIVQLLLKIIFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 202

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + ++     F ++ P   +     +  +  Q+               +   + +N    +
Sbjct: 203 VEVDGGGGDFHVVFPYSMVEPIRELLDAGVQSDKMEADVRWSSALKEEIMDVPINFRVNL 262

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L+D++ L+ G +IP        A++       Y  ++GR      I+I++ I  
Sbjct: 263 LEHDIALRDLMELQPGDIIPVEMPPH--AVMFVEELPTYRVKMGRSSDKLAIQISEEIKR 320

Query: 307 DQ 308
             
Sbjct: 321 PD 322


>gi|73532540|dbj|BAE19828.1| flagellar motor switch protein [Edwardsiella tarda]
          Length = 337

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 98/304 (32%), Gaps = 10/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++   +  P  P    R+       +   +    +   + +         +    DI+  
Sbjct: 31  ENHDGDVRPYDPTTQRRVV------RERLQALEIVNERFARQFRMGLFNLVRRSPDITVG 84

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + +   +     +       +   L        +    +LV   ++NL G       ++ 
Sbjct: 85  AVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVD 144

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++ +R +               +          I     N     N+ V T
Sbjct: 145 GREFTHTEQRVIQRMLRLALDAYRDAWGAIFKLDVKYVR-SKIQVKFTNITTSPNDIVVT 203

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNI 242
               + +  ++  F + IP   +     + ++   + S+ + +   D  +++     + +
Sbjct: 204 TPFTVEVGALSGEFNICIPFSMIGTLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELEL 263

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                     L DV+ L+IG V+P         + + +G  + +C+ G     Y +R+  
Sbjct: 264 VANFVDVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321

Query: 303 RINF 306
            IN 
Sbjct: 322 MINP 325


>gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae 642]
          Length = 322

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 98/306 (32%), Gaps = 17/306 (5%)

Query: 5   SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
               N+ P            R+                +   + ++        +    D
Sbjct: 25  QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSAD 78

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           ++    Q  KF   +HS       + A +              LV  L++N  G      
Sbjct: 79  VAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-H 137

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  R  +  E ++ +  + Q    L +      E +   E                +E
Sbjct: 138 AKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSE 195

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQL 238
            V     ++ ++       + +P   +     +  +  Q+  ++Q E  ++        +
Sbjct: 196 AVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDV 255

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           NV + T I  ++  L+D++ ++ G VIP         +L ANG   +  +LG       +
Sbjct: 256 NVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--SDSLVLRANGVPSFKVKLGSHKGKMAL 313

Query: 299 RITDRI 304
           ++ + I
Sbjct: 314 QVIEPI 319


>gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
           27750]
 gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
           27750]
          Length = 327

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 101/308 (32%), Gaps = 13/308 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +  K          ++        K   +    +   + + L       +   V +   +
Sbjct: 30  TEEKQVKNYDFARPSKF------SKEHLRTLEIIFEHFGRLLATNLPAYLRKSVSVDVVN 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +S   ++     +     +   S N  +  ++NL   +++ LLG +  ++ +   
Sbjct: 84  SEVVIYSEFSNALSNPVLLGVVGMQPLSGNIIMEMASNLGFAIVDRLLGGAGNSLDK--E 141

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  S +E  + +R       ++ +      + +P LE        +       +E +  +
Sbjct: 142 RDFSEIELSILERIFTVCVNLMQEPWENVVKVNPRLERIET--NSQFAQIISPSETIAIV 199

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVN 241
            +N+ I +V     + +P  TL              N  E  +    D       +  + 
Sbjct: 200 TINLKIGDVEGLVNICLPFATLEPVMDKLNTKYWFSNMQEKDTNTYEDAIETVIDKAMIP 259

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +   K ++ D   L+IG +I    +      +     + +    G     Y +R+T
Sbjct: 260 VKAVLGTSKISVSDFANLQIGDIIRIDKKVDQELEVFVGNIKKFKALPGYYEDKYAVRVT 319

Query: 302 DRINFDQK 309
           + I  + +
Sbjct: 320 EVIRKESE 327


>gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
           4028]
 gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
           4028]
          Length = 325

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 95/292 (32%), Gaps = 10/292 (3%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
                   R+            +   +   + +         M   VD++  S    KF 
Sbjct: 37  AFDLANQDRIIRG------RMPVLEIINDRFSRLCTSALANTMRKRVDVNPISIDMSKFG 90

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
             + S       +   +     N  +     LV +L+EN  G +     ++  R  + +E
Sbjct: 91  DFMRSLPVPTSINIFKIDPLRGNALLVVDTRLVFSLVENFFGGAGSQP-KIEGRDFTPIE 149

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           + +  + +  I A L        E   ++E        +  T    ++ V  I+  + +E
Sbjct: 150 QSIIVKVVKIILANLEDAWRPVHEV--SIELLRSEINPQFATIVPPSDVVVVISFEVELE 207

Query: 192 NVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
           N   S VL +P  T+         + Q +        I  F  +  +  V+++      +
Sbjct: 208 NALGSMVLALPYATIEPIRSKLYAAFQTERLEIDHAWISRFRDRLMETPVDMNVTFGTTQ 267

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            T + ++ +K+G ++     E        +G   +    G V  N   +I  
Sbjct: 268 ITGRQLLDMKVGDILMLDQDEDDMLSGRIHGILKFFGLPGFVKGNKAFKIIK 319


>gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 328

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 96/285 (33%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K        +   Y + L      ++ + + +   S +   +   I S     + +  S
Sbjct: 48  SKDQIHTLQVIYENYARTLGTYLSGQLRVPLQVELLSVEQLTYEEFIRSIPNPTILNIFS 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L     +  +  + NL    L+ LLG       +   R+L+ +E+ + +R   ++   L 
Sbjct: 108 LYPLHGSAIMEINPNLGFAFLDRLLGGPGYAPSK--ARALTEIEQTVIERLSQRMLDYLE 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +   +  +  P+LE        +        E +  +++   + +V     + IP   L 
Sbjct: 166 EPWGSIIQIEPSLERVET--NPQFTQLVQPTEIMIIVSLETRMGDVMGMINICIPFLVLE 223

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                          ++ +S   I     K     + I   +     T++D++ L +G V
Sbjct: 224 PILDKLNVHYYYSTAAQERSPANIAAIRTKLENTTIPIKVVMGKTVITVRDLLALSVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           IP          +    +  +  + G       I++T  +  + +
Sbjct: 284 IPLNRNISQELDIVIGNRAKFLGKPGVFANRMAIQVTGIVEEESE 328


>gi|262166227|ref|ZP_06033964.1| flagellar motor switch protein FliM [Vibrio mimicus VM223]
 gi|262025943|gb|EEY44611.1| flagellar motor switch protein FliM [Vibrio mimicus VM223]
          Length = 300

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 5/278 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
                 +   + + L       +    ++S    Q  KF    ++       +       
Sbjct: 1   MPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPL 60

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
                +     LV  L+EN  G       ++  R  +  E+++ +  +  + A   +  S
Sbjct: 61  KGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWS 120

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
                    E                 E +   + ++ ++     F +++P   +     
Sbjct: 121 PVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRE 178

Query: 212 ISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +  +  Q+               +   + VN    +      L+D++ L++G VIP    
Sbjct: 179 LLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMP 238

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               A++       Y  ++GR G+   ++++++I    
Sbjct: 239 --EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 274


>gi|261209862|ref|ZP_05924163.1| flagellar motor switch protein FliM [Vibrio sp. RC341]
 gi|260841048|gb|EEX67573.1| flagellar motor switch protein FliM [Vibrio sp. RC341]
          Length = 349

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + L       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            +     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  + A   +  S         E                 E +   + ++ ++ 
Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +   + VN    +     
Sbjct: 209 GGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            L+D++ L++G VIP        A++       Y  ++GR G+   ++++++I    
Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893]
 gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893]
          Length = 332

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 12/301 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++              R+                +   + ++        +  + D+S  
Sbjct: 27  ETDEAGIKSYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRNADVSTG 80

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             Q  KF   IH+       +   +              LV  L++N  G       ++ 
Sbjct: 81  GVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGR-HAKIE 139

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E ++ +  + Q+   + +      +     E                +E V  
Sbjct: 140 GREFTPTETRIVQMVLDQVFHDMREAWHAVLKVD--FEYLSSEVNPAMANIVSPSEVVVV 197

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              ++ ++       + +P   +     +  +  Q+  ++  E  +         +NV I
Sbjct: 198 STFHIELDGGGGELHMALPYSMIEPIRDVLDAGVQSDIDDVDERWVSALQEDIKDVNVPI 257

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +T +  ++ +L+D+  LK G +IP          L+ANG  +Y   +G       +RI D
Sbjct: 258 NTTVCRRRISLRDIAKLKEGDIIPVEIP--ELLTLTANGIPVYKATMGTRDGKLALRIHD 315

Query: 303 R 303
           R
Sbjct: 316 R 316


>gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
           2522]
 gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
           2522]
          Length = 332

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 108/316 (34%), Gaps = 13/316 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++ +   K           R        K   +  + +   Y + L      ++   V +
Sbjct: 27  LKKEETQKKIKVYDFKRALRF------SKDQIRSLTRIHENYARLLTTQLSAQLRTYVQV 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  S     +   I S  +  + +          F I  + N+   +L+ +LG   E + 
Sbjct: 81  AVASVDQLPYDEFIRSVPKMTILNVFEPFPLDGRFVIEVNPNIAYAMLDRMLGGQGEALN 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++ +  L+ +E K+  +   +    L +   +  +  P +++       +       NE 
Sbjct: 141 KVES--LTEIETKILSQLFQRSLETLREAWESVVDLDPVMDEIEV--NPQFLQLVSPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  I+++ TI   +    + +P   +             Q K +++    +    +   Q
Sbjct: 197 VVVISLSTTIGEASGMMNICLPHVVIESILPKLSIHLWMQQKKKDRQPGELSALEKNLKQ 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             +++   +   + ++ + + L    VI          ++    +  Y  + G+V     
Sbjct: 257 APLDVIVELGQSQISIAEFLQLGENDVIELNQTIDDPLLVKLGNEPKYYSQPGKVKGKLA 316

Query: 298 IRITDRINFDQKSLKN 313
           ++ITD I  + +S   
Sbjct: 317 VQITDSIVKEGESDDE 332


>gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT]
 gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT]
          Length = 331

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 97/285 (34%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   + + +      ++  +V I+  + Q   +   IHS     + +   
Sbjct: 48  SKDHIRTLELIHDNFARTISNYLTAQVRTNVKINIETVQQITYEEFIHSVPNPTILTIFK 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +   S +     +      +++ LLG S     +   R  + ++K + K+    + A L 
Sbjct: 108 MPPLSGSILFETNPQFAYQIIDVLLGGSGT--GKYKTREFTDIDKNIIKQINKGLIANLK 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                  E  P +E          N     NE V  I  ++ +    +   + IP  ++ 
Sbjct: 166 LAWEDVMEVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNNTFINICIPYLSIE 223

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           K           +  +    E   +   ++   + + +   +     T+   +TL +G V
Sbjct: 224 KVLDKLVVQYWFRENNTETLEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I       +   +    +       G +GKN  ++I D I+ D +
Sbjct: 284 ITLDSLTSSPVKVVVGNEPYLLGRPGTIGKNRGVQILDIIDKDVE 328


>gi|51596032|ref|YP_070223.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
           32953]
 gi|153949279|ref|YP_001401268.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
           31758]
 gi|51589314|emb|CAH20935.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
           32953]
 gi|152960774|gb|ABS48235.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
           31758]
          Length = 333

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 88/303 (29%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +   +  P  P    R+       +        +   + +         +    DI+   
Sbjct: 29  ANETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L           + +LV   ++NL G       ++  
Sbjct: 83  IKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +           +   +          I     N     N+ V + 
Sbjct: 143 REFTHTEQRVITRMLRLALDAYRDAWAAIYKIDVEYVRSE-IQVKFTNITTSPNDIVVST 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
              + I  ++  F + IP   +     +  +   + S  +     +   ++     + + 
Sbjct: 202 PFQVEIGTLSGEFNICIPFAMIEPLRELLTNPPLENSRQEDNYWRETLVKQVQHSELELV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   
Sbjct: 262 ANFVDIPLRLSQILKLQPGDVLPIEKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHL 319

Query: 304 INF 306
           IN 
Sbjct: 320 INP 322


>gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium
           HP15]
          Length = 332

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 97/301 (32%), Gaps = 12/301 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++              R+                +   + ++        M  + D+S  
Sbjct: 27  ETDDTGIKSYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLMRRNADVSTG 80

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             Q  KF   IH+       +   +              LV  L++N  G       ++ 
Sbjct: 81  GVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGR-HAKIE 139

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E ++ +  + Q+   + +      +     E                +E V  
Sbjct: 140 GREFTPTETRIVQMVLDQVFHDMKEAWHAVLKVD--FEYLSSEVNPAMANIVSPSEVVVV 197

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              ++ ++         +P   +     +  +  Q+  ++  E  ++       +++V I
Sbjct: 198 STFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDERWVNALQEDIKEVSVPI 257

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +T +  ++ +L+D+  +K G +IP          ++ANG  IY   LG       +RI +
Sbjct: 258 NTTVCRRRISLRDIAKMKAGDIIPVEIP--EHLTVTANGIPIYKATLGTRDGKLALRIHE 315

Query: 303 R 303
           R
Sbjct: 316 R 316


>gi|22126366|ref|NP_669789.1| flagellar motor switch protein FliM [Yersinia pestis KIM 10]
 gi|45441387|ref|NP_992926.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807195|ref|YP_651111.1| flagellar motor switch protein FliM [Yersinia pestis Antiqua]
 gi|108812461|ref|YP_648228.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
 gi|145598589|ref|YP_001162665.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides F]
 gi|149366229|ref|ZP_01888264.1| flagellar motor switch protein FliM [Yersinia pestis CA88-4125]
 gi|165925921|ref|ZP_02221753.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938773|ref|ZP_02227328.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010886|ref|ZP_02231784.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210779|ref|ZP_02236814.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401189|ref|ZP_02306692.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420157|ref|ZP_02311910.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425859|ref|ZP_02317612.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467512|ref|ZP_02332216.1| flagellar motor switch protein FliM [Yersinia pestis FV-1]
 gi|170024624|ref|YP_001721129.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
           YPIII]
 gi|186895137|ref|YP_001872249.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928944|ref|YP_002346819.1| flagellar motor switch protein FliM [Yersinia pestis CO92]
 gi|229896268|ref|ZP_04511438.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides A]
 gi|229897205|ref|ZP_04512361.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897932|ref|ZP_04513083.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902837|ref|ZP_04517954.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
 gi|270486623|ref|ZP_06203697.1| flagellar motor switch protein FliM [Yersinia pestis KIM D27]
 gi|294504010|ref|YP_003568072.1| flagellar motor switch protein [Yersinia pestis Z176003]
 gi|21959351|gb|AAM86040.1|AE013852_2 flagellar motor switch protein [Yersinia pestis KIM 10]
 gi|45436247|gb|AAS61803.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776109|gb|ABG18628.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
 gi|108779108|gb|ABG13166.1| flagellar motor switch protein FliM [Yersinia pestis Antiqua]
 gi|115347555|emb|CAL20464.1| flagellar motor switch protein FliM [Yersinia pestis CO92]
 gi|145210285|gb|ABP39692.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides F]
 gi|149292642|gb|EDM42716.1| flagellar motor switch protein FliM [Yersinia pestis CA88-4125]
 gi|165913387|gb|EDR32009.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922125|gb|EDR39302.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990230|gb|EDR42531.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207959|gb|EDR52439.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961852|gb|EDR57873.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049578|gb|EDR60986.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055258|gb|EDR65055.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169751158|gb|ACA68676.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
           YPIII]
 gi|186698163|gb|ACC88792.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680284|gb|EEO76383.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
 gi|229688973|gb|EEO81038.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693542|gb|EEO83591.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701191|gb|EEO89220.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides A]
 gi|262361804|gb|ACY58525.1| flagellar motor switch protein [Yersinia pestis D106004]
 gi|262366060|gb|ACY62617.1| flagellar motor switch protein [Yersinia pestis D182038]
 gi|270335127|gb|EFA45904.1| flagellar motor switch protein FliM [Yersinia pestis KIM D27]
 gi|294354469|gb|ADE64810.1| flagellar motor switch protein [Yersinia pestis Z176003]
 gi|320015439|gb|ADV99010.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 333

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 88/303 (29%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +   +  P  P    R+       +        +   + +         +    DI+   
Sbjct: 29  ANETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L           + +LV   ++NL G       ++  
Sbjct: 83  IKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +           +   +          I     N     N+ V + 
Sbjct: 143 REFTHTEQRVITRMLRLALDAYRDAWAAIYKIDVEYVRSE-IQVKFTNITTSPNDIVVST 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
              + I  ++  F + IP   +     +  +   + S  +     +   ++     + + 
Sbjct: 202 PFQVEIGTLSGEFNICIPFAMIEPLRELLTNPPLENSRQEDNYWRETLVKQVQHSELELV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   
Sbjct: 262 ANFVDIPLRLSQILKLQPGDVLPIEKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHL 319

Query: 304 INF 306
           IN 
Sbjct: 320 INP 322


>gi|28899016|ref|NP_798621.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837001|ref|ZP_01989668.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ3810]
 gi|260365238|ref|ZP_05777795.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030]
 gi|260878788|ref|ZP_05891143.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AN-5034]
 gi|260897383|ref|ZP_05905879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           Peru-466]
 gi|260899942|ref|ZP_05908337.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ4037]
 gi|4322004|gb|AAD15907.1| polar flagellar switch protein FliM [Vibrio parahaemolyticus]
 gi|28807235|dbj|BAC60505.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749774|gb|EDM60519.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ3810]
 gi|308088268|gb|EFO37963.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           Peru-466]
 gi|308094184|gb|EFO43879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AN-5034]
 gi|308107409|gb|EFO44949.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ4037]
 gi|308115479|gb|EFO53019.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030]
 gi|328474447|gb|EGF45252.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 10329]
          Length = 348

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 84/295 (28%), Gaps = 11/295 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
             ++       +            I     LV  L+EN  G       ++  R  +  E+
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ +  +  +     +  S         E                 E +   + ++ ++ 
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               F +++P   +     +  +  Q+               +     VN    +  K  
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +L+D++ L+ G +IP        A +       Y  ++GR      ++++  I  
Sbjct: 269 SLRDLMELQPGDIIPIEMP--EHATMFIEDLPTYRVKMGRSEDKLAVQVSQEIER 321


>gi|70729040|ref|YP_258774.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5]
 gi|68343339|gb|AAY90945.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5]
          Length = 322

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 92/299 (30%), Gaps = 12/299 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + ++        +    D++    Q  
Sbjct: 34  SVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVM 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +HS       +   +              LV  L++N  G       ++  R  +
Sbjct: 88  KFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++ +  + Q    L +        +   E                +E +     ++
Sbjct: 147 PTELRVVRMVLEQAFVDLKEAWQAIMPVN--FEYINSEVNPAMANIVGPSEAIVVSTFHI 204

Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++       + +P   +     +  +  Q+  ++Q E            + V +   + 
Sbjct: 205 ELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWSKALREDVLDVAVPLSATVA 264

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            ++  L+D++ ++ G VIP    E    I+ ANG   +  +LG    N  +++ + I  
Sbjct: 265 RRQLRLRDILHMQPGDVIPVELPED--MIMRANGVPSFKVKLGSHKGNLALQVIEPIER 321


>gi|253990101|ref|YP_003041457.1| flagellar motor switch protein FliM [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781551|emb|CAQ84714.1| flagellar motor switch protein flim [Photorhabdus asymbiotica]
          Length = 334

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 91/313 (29%), Gaps = 10/313 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
              S      P  P    R+       +   +    +   + +         +    DI+
Sbjct: 26  NTASRENEVRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNMLRRSPDIT 79

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   L           + +LV   ++NL G       +
Sbjct: 80  VGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFAPSLVYIAVDNLFGGDGRFPTK 139

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++  R +            +  +          +     N     N+ V
Sbjct: 140 VEGREFTNTEQRVINRMLRMALDSYRDAWDSIFKIEVEYVRSE-MQVKFTNITTSPNDIV 198

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNV 240
            T    + I  ++  F + IP   +        +   ++   +     +   ++     +
Sbjct: 199 VTTPFQVEIGALSGEFNICIPFAMIEPLRERLTNPPLENVRQEDSLWRESLVKQVQHSEL 258

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          L  ++ L+ G ++P         I+  +G  + + + G +   Y +R+
Sbjct: 259 ELVANFVDIPLRLSKILQLQPGDILPIDKP--ERLIVHVDGVPVLTSQYGTLNGQYALRV 316

Query: 301 TDRINFDQKSLKN 313
              IN    +L  
Sbjct: 317 EHLINPVLNALDE 329


>gi|209963533|ref|YP_002296448.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
 gi|7025355|gb|AAF35846.1|AF220002_3 lateral flagellar motor switch protein FliM [Rhodospirillum
           centenum]
 gi|209956999|gb|ACI97635.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
          Length = 352

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 105/313 (33%), Gaps = 3/313 (0%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
           +  + S     ++ ++            +   +     + L   F+      V+++    
Sbjct: 42  VDDSKSVRTRSVIDQIVNSSFVNYDRLPMLDVVFDRLVRLLNTSFRNLTSGTVEVTVQQI 101

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
            S +F   +       + +      W ++  +   + L+ ++++ LLG        +  R
Sbjct: 102 ASVRFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSELIYSIVDILLGGRRSDPAPIDGR 161

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             + +E+ LA+R I  +   L    S         E        +      SN    +  
Sbjct: 162 PYTVIERALAERLIRTVLKDLGTAFSPLSAVGFACERVET--TPQFAVITRSNNACISAR 219

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
             + ++       L+IP  TL     + L     +   +          +  + +V++  
Sbjct: 220 FQVALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFGRDSMWETHLKNELRRTSVDLSA 279

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +   + +L D++  K G  +    R    A+L+     ++  E+G+   N  IRI   +
Sbjct: 280 VLGQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHVPMFVGEMGQRNGNVAIRIDADL 339

Query: 305 NFDQKSLKNFLHK 317
               + +   L +
Sbjct: 340 GAQDEVIHGLLQR 352


>gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato T1]
 gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato K40]
 gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato T1]
 gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 322

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +          R+                +   + ++        +    D++   
Sbjct: 30  SEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGG 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF   +HS       + A +              LV  L++N  G       ++  
Sbjct: 84  VQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E ++ +  + Q    L +      E +   E                +E V   
Sbjct: 143 REFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVIS 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ ++       + +P   +     +  +  Q+  ++Q E  ++        +NV + 
Sbjct: 201 TFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLT 260

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           T I  ++  L+D++ ++ G VIP         +L ANG   +  +LG       +++ + 
Sbjct: 261 TTIAQRQLPLRDILHMRPGDVIPVEL--SDTLVLRANGVPSFKVKLGSHKGKMALQVIEP 318

Query: 304 I 304
           I
Sbjct: 319 I 319


>gi|224534350|ref|ZP_03674928.1| flagellar motor switch protein FliM [Borrelia spielmanii A14S]
 gi|224514452|gb|EEF84768.1| flagellar motor switch protein FliM [Borrelia spielmanii A14S]
          Length = 352

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  SS    + ++        +   V +   S     +   I S       +  +
Sbjct: 58  SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + 
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  P           +        E +  + + + I  V       +P  T+ 
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                              + + +D    K     + +   I   K  ++++++L  G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLNKGDV 294

Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314
           +            L    KE + C +G +G   +++IT++I   +    LK  
Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGFDLLKEL 347


>gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae B728a]
 gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae FF5]
 gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 322

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 98/306 (32%), Gaps = 17/306 (5%)

Query: 5   SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
               N+ P            R+                +   + ++        +    D
Sbjct: 25  QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSAD 78

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           ++    Q  KF   +HS       + A +              LV  L++N  G      
Sbjct: 79  VAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-H 137

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  R  +  E ++ +  + Q    L +      E +   E                +E
Sbjct: 138 AKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSE 195

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQL 238
            V     ++ ++       + +P   +     +  +  Q+  ++Q E  ++        +
Sbjct: 196 AVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDV 255

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           NV + T I  ++  L+D++ ++ G VIP         ++ ANG   +  +LG       +
Sbjct: 256 NVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--SDSLVMRANGVPSFKVKLGSHKGKMAL 313

Query: 299 RITDRI 304
           ++ + I
Sbjct: 314 QVIEPI 319


>gi|222084857|ref|YP_002543386.1| flagellar C-ring protein [Agrobacterium radiobacter K84]
 gi|221722305|gb|ACM25461.1| flagellar C-ring protein [Agrobacterium radiobacter K84]
          Length = 314

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 2/316 (0%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M  QS H   + + P+L A+LTG LGD  T+ K+ ++ G +Y +FLP I K +  LDV +
Sbjct: 1   MSQQSTHPKQT-MDPVLFAKLTGGLGDPATLAKLGTAFGQVYAEFLPDIIKSETGLDVSV 59

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
            Y  C+SG  S ++     N      SL +WS NF +GC    V+TL+E+LLGA  ETI 
Sbjct: 60  GYAGCRSGLMSELVAGIGSNCALVNGSLRNWSQNFLLGCGTGFVMTLMEHLLGAQPETID 119

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               R LS +E  L+     +I+ VL   ++ T    P L+  Y+I+         +++F
Sbjct: 120 SPAARPLSVIELDLSVMVFDKIANVLRSAVNATGGFEPYLDPPYNIEDRPTPVAGQTDDF 179

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
              I M +++    S  V+I+PQ  LL+T + +  ++N S +      +    +  +  V
Sbjct: 180 AAAIAMTISLGKTVSEIVVIVPQYELLRTVVSAPRAKNPSAST-GAWAEQLNEQVRRSQV 238

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            ++ RI L+  TL  +  L +G VIPF+        +SAN K++Y CE GR G+NYT+R+
Sbjct: 239 TLEARIRLQSLTLDTISRLAVGDVIPFMDTSDVQVEVSANSKDLYVCEFGRSGENYTVRV 298

Query: 301 TDRINFDQKSLKNFLH 316
            D +N D + L++ ++
Sbjct: 299 KDTVNSDDELLRHLMN 314


>gi|238796938|ref|ZP_04640442.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
           43969]
 gi|238719198|gb|EEQ11010.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
           43969]
          Length = 332

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 94/306 (30%), Gaps = 10/306 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
              ++     P  P    R+       +        +   + +         +    DI+
Sbjct: 28  NNPALDVGIKPYDPNTQRRVV------RERLHSLEIINERFARQFRMGLFNLLRRSPDIT 81

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   ++          S NLV   ++NL G       +
Sbjct: 82  AGNIKIQPYHEFARNLPVPTNLNLVHMNPLRGTALFVFSPNLVFMAVDNLFGGDGRFPTK 141

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
              R  +  E+++ KR +       +   S+  +          I     N     N+ V
Sbjct: 142 ADGREFTPTEQRVIKRMLTMALEAYDFAWSSIFKLHTEYVRAE-IQVKFTNITSSPNDIV 200

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNV 240
            T    + I      F + IP   +     +  S     S  + +   +  A +  +  +
Sbjct: 201 VTTPFYVEIGPHRGEFDICIPFSIIEPLRELLTSPPMENSRQEEKQWRNTLASQVRETEL 260

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +        T L  V+ +K G VIP     +       +G  ++S + G V K Y +++
Sbjct: 261 ELVASFADIPTRLSQVMKMKEGDVIPIDK--QESIEACVDGVPVFSGKYGCVNKQYALKV 318

Query: 301 TDRINF 306
              +N 
Sbjct: 319 EKMMNP 324


>gi|203284199|ref|YP_002221939.1| flagellar motor switch protein [Borrelia duttonii Ly]
 gi|203287738|ref|YP_002222753.1| flagellar motor switch protein [Borrelia recurrentis A1]
 gi|201083642|gb|ACH93233.1| flagellar motor switch protein [Borrelia duttonii Ly]
 gi|201084958|gb|ACH94532.1| flagellar motor switch protein [Borrelia recurrentis A1]
          Length = 352

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 100/293 (34%), Gaps = 9/293 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  SS    + ++        +   V +   S     +   I S       +  +
Sbjct: 58  SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + 
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  P           +        E V  + + + I  V       +P  T+ 
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMVILVTLEVKIGKVEGLMNFCLPYITIE 234

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                              + + +D    K    N+ +   I   K  ++++++L+ G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDVLREKLEYTNMPLVAEIGEVKLKVREILSLEKGDV 294

Query: 265 IPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS--LKNF 314
           I   +       IL    KE + C +G VG   +++IT ++   +    LK  
Sbjct: 295 INLENSSIDQDLILKVGTKEKFKCRMGLVGNKISVQITRKVGEVEDFDLLKEL 347


>gi|92114085|ref|YP_574013.1| flagellar motor switch protein FliM [Chromohalobacter salexigens
           DSM 3043]
 gi|91797175|gb|ABE59314.1| flagellar motor switch protein FliM [Chromohalobacter salexigens
           DSM 3043]
          Length = 338

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 99/304 (32%), Gaps = 12/304 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S      P  P    R+       +        +   + +         M    DI+  S
Sbjct: 32  SREGKVRPFDPAKQHRII------RERLHALDIINERFARQFRVALFNLMRRSADITVES 85

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +S    +       +  ++     +  +    +LV  +++NL G     + +   
Sbjct: 86  VRYQSYSEFSRNLPVPTNLNLITMKPLRGSALVVFPPSLVFMVVDNLFGGDGRFLTKSEG 145

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-LSNEFVTT 183
           R  +  E+++  R +       ++   +       +E       +K        NE V  
Sbjct: 146 REFTRTEQRIIHRMLKMALEGYSESWKSVYPLD--IEYTRSELQVKFANITNSPNEIVVN 203

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNI 242
              ++ + N++S F + IP   +     I  S  + +  ++ +      A +    +V +
Sbjct: 204 STFHVEVGNLSSEFNICIPYSMIEPIRDILASPLHDTHPDEEQQWEARMAHEIRHSSVEL 263

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                     L+DV  L +G +IP          +S +G  + +C+ G       +R+  
Sbjct: 264 TADFVDIPLRLRDVTQLSVGDIIPIELP--EAVNVSVDGIPVMTCDYGSQKSQRALRVRH 321

Query: 303 RINF 306
            I  
Sbjct: 322 LIEH 325


>gi|224531918|ref|ZP_03672550.1| flagellar motor switch protein FliM [Borrelia valaisiana VS116]
 gi|224511383|gb|EEF81789.1| flagellar motor switch protein FliM [Borrelia valaisiana VS116]
          Length = 352

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  SS    + ++        +   V +   S     +   I S       +  +
Sbjct: 58  SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + 
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  P           +        E +  + + + I  V       +P  T+ 
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                              + + +D    K     + +   I   K  ++++++L  G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDV 294

Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314
           +            L    KE + C +G +G   +++IT++I   +    LK  
Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKISVQITEKIGDIKGFDLLKEL 347


>gi|187918152|ref|YP_001883715.1| flagellar motor switch protein FliM [Borrelia hermsii DAH]
 gi|119861000|gb|AAX16795.1| flagellar motor switch protein FliM [Borrelia hermsii DAH]
          Length = 352

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 100/293 (34%), Gaps = 9/293 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  SS    + ++        +   V +   S     +   I S       +  +
Sbjct: 58  SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I + + 
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILSNMR 176

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  P           +        E V  + + + I  V       +P  T+ 
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMVILVTLEVKIGKVEGLMNFCLPYITIE 234

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                              + + +D    K    ++ +   I   K  ++++++L+ G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDVLREKLENTDMLLVAEIGEVKLKVREILSLEKGDV 294

Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS--LKNF 314
           I           IL    K+ + C +G VG   +++IT+++   +    LK  
Sbjct: 295 INLEDSPIDKDLILKVGTKQKFKCRMGLVGSKISVQITEKVGEVEDFDLLKEL 347


>gi|15594623|ref|NP_212412.1| flagellar motor switch protein FliM [Borrelia burgdorferi B31]
 gi|111115103|ref|YP_709721.1| flagellar motor switch protein FliM [Borrelia afzelii PKo]
 gi|195941368|ref|ZP_03086750.1| flagellar motor switch protein FliM [Borrelia burgdorferi 80a]
 gi|216263834|ref|ZP_03435828.1| flagellar motor switch protein FliM [Borrelia afzelii ACA-1]
 gi|216264557|ref|ZP_03436549.1| flagellar motor switch protein FliM [Borrelia burgdorferi 156a]
 gi|218249869|ref|YP_002374801.1| flagellar motor switch protein FliM [Borrelia burgdorferi ZS7]
 gi|221217666|ref|ZP_03589134.1| flagellar motor switch protein FliM [Borrelia burgdorferi 72a]
 gi|223888930|ref|ZP_03623521.1| flagellar motor switch protein FliM [Borrelia burgdorferi 64b]
 gi|224533145|ref|ZP_03673745.1| flagellar motor switch protein FliM [Borrelia burgdorferi WI91-23]
 gi|224533778|ref|ZP_03674366.1| flagellar motor switch protein FliM [Borrelia burgdorferi CA-11.2a]
 gi|225549106|ref|ZP_03770081.1| flagellar motor switch protein FliM [Borrelia burgdorferi 94a]
 gi|225550153|ref|ZP_03771113.1| flagellar motor switch protein FliM [Borrelia burgdorferi 118a]
 gi|225552170|ref|ZP_03773110.1| flagellar motor switch protein FliM [Borrelia sp. SV1]
 gi|226320579|ref|ZP_03796139.1| flagellar motor switch protein FliM [Borrelia burgdorferi 29805]
 gi|226321596|ref|ZP_03797122.1| flagellar motor switch protein FliM [Borrelia burgdorferi Bol26]
 gi|3913687|sp|Q57511|FLIM_BORBU RecName: Full=Flagellar motor switch protein FliM
 gi|1165263|gb|AAA85602.1| FliM [Borrelia burgdorferi]
 gi|1185056|gb|AAB58965.1| switch protein [Borrelia burgdorferi]
 gi|2688188|gb|AAC66670.1| flagellar motor switch protein (fliM) [Borrelia burgdorferi B31]
 gi|110890377|gb|ABH01545.1| flagellar motor switch protein [Borrelia afzelii PKo]
 gi|215979878|gb|EEC20700.1| flagellar motor switch protein FliM [Borrelia afzelii ACA-1]
 gi|215981030|gb|EEC21837.1| flagellar motor switch protein FliM [Borrelia burgdorferi 156a]
 gi|218165057|gb|ACK75118.1| flagellar motor switch protein FliM [Borrelia burgdorferi ZS7]
 gi|221192343|gb|EEE18562.1| flagellar motor switch protein FliM [Borrelia burgdorferi 72a]
 gi|223885746|gb|EEF56845.1| flagellar motor switch protein FliM [Borrelia burgdorferi 64b]
 gi|224511872|gb|EEF82273.1| flagellar motor switch protein FliM [Borrelia burgdorferi WI91-23]
 gi|224513071|gb|EEF83434.1| flagellar motor switch protein FliM [Borrelia burgdorferi CA-11.2a]
 gi|225369265|gb|EEG98718.1| flagellar motor switch protein FliM [Borrelia burgdorferi 118a]
 gi|225370332|gb|EEG99770.1| flagellar motor switch protein FliM [Borrelia burgdorferi 94a]
 gi|225371168|gb|EEH00598.1| flagellar motor switch protein FliM [Borrelia sp. SV1]
 gi|226232785|gb|EEH31538.1| flagellar motor switch protein FliM [Borrelia burgdorferi Bol26]
 gi|226233998|gb|EEH32719.1| flagellar motor switch protein FliM [Borrelia burgdorferi 29805]
 gi|312147869|gb|ADQ30528.1| flagellar motor switch protein FliM [Borrelia burgdorferi JD1]
 gi|312149126|gb|ADQ29197.1| flagellar motor switch protein FliM [Borrelia burgdorferi N40]
          Length = 352

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  SS    + ++        +   V +   S     +   I S       +  +
Sbjct: 58  SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + 
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  P           +        E +  + + + I  V       +P  T+ 
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                              + + +D    K     + +   I   K  ++++++L  G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDV 294

Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314
           +            L    KE + C +G +G   +++IT++I   +    LK  
Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGFDLLKEL 347


>gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum
           BKT015925]
 gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum
           BKT015925]
          Length = 331

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 100/285 (35%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   + + +      ++  +V I   + Q   +   IHS     + +   
Sbjct: 48  SKDHIRTLELIHDNFARIISNYLTAQVRTNVKIKIETVQQITYEEFIHSVPNPTILTIFK 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +   S +     +      +++ LLG       +   R  + ++K + K+    + A L 
Sbjct: 108 MPPLSGSILFETNPQFAYQIIDVLLGGPGVGQYKT--REFTDIDKNIIKQINKGLIANLK 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                  +  P +E          N     NE V  I  ++ +   ++   + IP  ++ 
Sbjct: 166 LAWEDVIQVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIE 223

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           K           +    +  E+  +   R+   + + +   +   K T+ + +TL +G V
Sbjct: 224 KVLDKLVVQYWFRENDTDTLEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +       +   +    +     + G +GKN  ++I D I+ D +
Sbjct: 284 VTLDALTSSPVKMMVGNQPYLLAKPGTMGKNRGVQILDIIDKDVE 328


>gi|83647849|ref|YP_436284.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396]
 gi|83635892|gb|ABC31859.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396]
          Length = 340

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 97/299 (32%), Gaps = 12/299 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                      R+                +   + ++        +  + D++    Q  
Sbjct: 32  GVRSYDLTSQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRNADVASGGVQIL 85

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   IH+       +   +              LV  L++N  G       ++  R  +
Sbjct: 86  KFGEYIHTLYVPTSLNLVKIRPLRGTGLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 144

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++ +  + Q+   + +  +   +     E                +E V     ++
Sbjct: 145 PTEIRIVQMVLEQVFHDMKEAWNAVMKVD--FEYVNSEVNPAMANIVSPSEVVVVSTFHI 202

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++       + +P   +     +  +  Q+  ++  E  I    +   +  V ++  + 
Sbjct: 203 ELDGGGGDMHVAMPYSMIEPIREVLDAGVQSDVDDVDERWISALQQDILEARVPLNAAVV 262

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            +K +L+ +  LK G VIP          ++ANG  I+  ++G+   N  ++I D+I  
Sbjct: 263 RQKISLRSLSRLKPGDVIPVELP--ETITVTANGVPIFIAKVGQCNGNLALKIVDKIKR 319


>gi|51598538|ref|YP_072726.1| flagellar motor switch protein FliM [Borrelia garinii PBi]
 gi|219684519|ref|ZP_03539462.1| flagellar motor switch protein FliM [Borrelia garinii PBr]
 gi|219685746|ref|ZP_03540557.1| flagellar motor switch protein FliM [Borrelia garinii Far04]
 gi|51573109|gb|AAU07134.1| flagellar motor switch protein [Borrelia garinii PBi]
 gi|219671881|gb|EED28935.1| flagellar motor switch protein FliM [Borrelia garinii PBr]
 gi|219672685|gb|EED29713.1| flagellar motor switch protein FliM [Borrelia garinii Far04]
          Length = 352

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  SS    + ++        +   V +   S     +   I S       +  +
Sbjct: 58  SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + 
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  P           +        E +  + + + I  V       +P  T+ 
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                              + + +D    K     + +   I   K  ++++++L  G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLIAEIGEVKLKVREILSLDKGDV 294

Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314
           +            L    KE + C +G +G   +++IT++I   +    LK  
Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGFDLLKEL 347


>gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7]
          Length = 322

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 98/306 (32%), Gaps = 17/306 (5%)

Query: 5   SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
               N+ P            R+                +   + ++        +    D
Sbjct: 25  QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFPRYTRISMFNLLRRSAD 78

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           ++    Q  KF   +HS       + A +              LV  L++N  G      
Sbjct: 79  VAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-H 137

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  R  +  E ++ +  + Q    L +      E +   E                +E
Sbjct: 138 AKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSE 195

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQL 238
            V     ++ ++       + +P   +     +  +  Q+  ++Q E  ++        +
Sbjct: 196 AVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDV 255

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           NV + T I  ++  L+D++ ++ G VIP         +L ANG   +  +LG       +
Sbjct: 256 NVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--GDSLVLRANGVPSFKVKLGSHKGKMAL 313

Query: 299 RITDRI 304
           ++ + I
Sbjct: 314 QVIEPI 319


>gi|268589967|ref|ZP_06124188.1| flagellar motor switch protein FliM [Providencia rettgeri DSM 1131]
 gi|291314684|gb|EFE55137.1| flagellar motor switch protein FliM [Providencia rettgeri DSM 1131]
          Length = 335

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 84/307 (27%), Gaps = 10/307 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            N  P  P    R+  +             +   + +         +    DI+    + 
Sbjct: 33  DNVRPYDPNTQRRVIRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIKI 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +     +       +   +              LV   ++NL G       +   +  
Sbjct: 87  EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRQEGKEF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  R +               +          I     N     N+ V T    
Sbjct: 147 TNTEQRIINRMLKLALGAYRDAWKPIADIEVEYVRSE-IQVKFTNITTSPNDIVVTTPFL 205

Query: 188 MTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + I N    F + IP   +             +   ++E  +     +  +  + +    
Sbjct: 206 VEIGNTVGEFSICIPIAMIEPLRERLINPPMEQGHQENETWVTNLVTQVKRSELELVANF 265

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +  ++ L+ G VIP         I++ +G  + + + G     Y +R+   IN 
Sbjct: 266 VDIPMRISRLLQLQKGDVIPIEKP--DRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINP 323

Query: 307 DQKSLKN 313
              +L  
Sbjct: 324 VLNTLDE 330


>gi|332298232|ref|YP_004440154.1| flagellar motor switch protein FliM [Treponema brennaborense DSM
           12168]
 gi|332181335|gb|AEE17023.1| flagellar motor switch protein FliM [Treponema brennaborense DSM
           12168]
          Length = 344

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 97/285 (34%), Gaps = 8/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  S +   + +        ++   V +   S     +   I S       +  +
Sbjct: 48  SKEQIRTVSIMHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPTTLAVIN 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +     +  ++++ L G + +       R L+ +E+ + +  I +I A + 
Sbjct: 108 MDPLKGNAILEIDPAITFSMIDRLFGGTGQGAKV--QRDLTDIEQSVMEGIIVRILANMR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +   +  P L         +       +E V  + +   +          IP  T+ 
Sbjct: 166 EAWTQVIDLRPRLGQIET--NPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYLTIE 223

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                        +   + +   +     K   +++++   I      ++DV+ L++G +
Sbjct: 224 PIISKLSSQFWFSSVRRSSTTQYLGVLKEKLSDVDMDVVAEIGSVSLPIRDVLALRVGDI 283

Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +     R      LS   K+ + C+ G +GK   +++  +I   +
Sbjct: 284 VRLSNVRITDPITLSIGNKKKFLCQPGVIGKKMAVQVLSKITQGE 328


>gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1]
 gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
          Length = 322

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 94/277 (33%), Gaps = 6/277 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q    L +  
Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
               E +   E                +E +     ++ ++       + +P   +    
Sbjct: 169 QAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++Q E  ++   +    ++V I   +  ++  L+D++ ++ G VIP   
Sbjct: 227 EMLDAGFQSDLDDQDERWVNALRQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEM 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            E    I+ ANG   +  ++G    N  +++ + I  
Sbjct: 287 PED--MIMRANGVPAFKVKMGSHKGNLALQVIEPIER 321


>gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 322

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +          R+                +   + ++        +    D++   
Sbjct: 30  SEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGG 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF   +HS       + A +              LV  L++N  G       ++  
Sbjct: 84  VQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E ++ +  + Q    L +      E +   E                +E V   
Sbjct: 143 REFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPVMANIVGPSEAVVIS 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ ++       + +P   +     +  +  Q+  ++Q E  ++        +NV + 
Sbjct: 201 TFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLT 260

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           T I  ++  L+D++ ++ G VIP         +L ANG   +  +LG       +++ + 
Sbjct: 261 TTIAQRQLPLRDILHMRPGDVIPVEL--SDTLVLRANGVPSFKVKLGSHKGKMALQVIEP 318

Query: 304 I 304
           I
Sbjct: 319 I 319


>gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
 gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
 gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
 gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
 gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
 gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
 gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 332

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 98/284 (34%), Gaps = 6/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       +   V+++  S     +    +S       +   
Sbjct: 50  SKEQLRTLQMIFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIID 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
            +     F +  +NN    +L+ +LG   +   +L +R  + +E  L  + + Q+ ++  
Sbjct: 110 AAPLEGLFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQMLSLFK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   + +P+L         +       NE V    +++ I          +P  TL 
Sbjct: 168 EPWSNILDINPSLIRVET--NSQFAQIISPNETVALCTLSIKINETEGIMNFCMPHLTLE 225

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +    +  + + +   +    K  +  + +  ++     T+K+ +  +IG +I
Sbjct: 226 PIVPKLTTKFWFSSMKKEEKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLDFEIGDII 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 K    +  + K  +    G     Y++RIT+ I    +
Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329


>gi|308273526|emb|CBX30128.1| hypothetical protein N47_D29370 [uncultured Desulfobacterium sp.]
          Length = 322

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 96/301 (31%), Gaps = 4/301 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIE-KISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
              +   +   +     GK      +       +   +  FL +     + L  D+S   
Sbjct: 24  TESDVPEIDGAIGLYDFGKKSSPGHLSLPGLGMINERFINFLNESLPGTIGLSTDVSVDE 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
             S KF     S       +   +        +     LV   ++ + G    +  +L  
Sbjct: 84  IDSIKFGDFCRSLPVPTSLNIFKMEPLKGFALLVFEGWLVFAFVDAMFGGKGVSHVKLEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  + +E+K+  R +  +   L +  +  ++    +         +        + +   
Sbjct: 144 RGFTAIEQKIVSRIVDIVLVDLQKAWAEIKDLK--MVYTRSEMDPQFAGIAKPTDMIIAT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
              + I N      + +P + +         + +++             +K  +L++N+ 
Sbjct: 202 KFALNIGNFTGGMTICLPYDVIEPIGEKLKENYRSEKFEADPVWKQHIKKKIQELDINLK 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   K T ++ + +K+  V+    +     ++S      +   +G +     IRI D+
Sbjct: 262 CTLGRIKITGREFLEMKVDDVLLTGQKVDDPIVVSVGDLNKFKGHVGSMNNKKAIRIADK 321

Query: 304 I 304
           I
Sbjct: 322 I 322


>gi|119953077|ref|YP_945286.1| flagellar motor switch protein FliM [Borrelia turicatae 91E135]
 gi|119861848|gb|AAX17616.1| flagellar motor switch protein FliM [Borrelia turicatae 91E135]
          Length = 352

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 100/293 (34%), Gaps = 9/293 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  SS    + ++        +   V +   S     +   I S       +  +
Sbjct: 58  SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + 
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  P           +        E V  + + + I  V       +P  T+ 
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMVILVTLEVKIGKVEGLMNFCLPYITIE 234

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                              + + +D    K    ++ +   I   K  ++++++L  G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDILREKLENTDMLLVAEIGEVKLKVREILSLAKGDV 294

Query: 265 IPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS--LKNF 314
           +   +       IL    K+ + C +G VG   ++++T+++   +    LK  
Sbjct: 295 LNLENSPIDKDLILKVGTKQKFKCRMGLVGNKISVQVTEKVGEVEDFDLLKEL 347


>gi|291613061|ref|YP_003523218.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus
           ES-1]
 gi|291583173|gb|ADE10831.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus
           ES-1]
          Length = 333

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 11/302 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                  +     R+                +   + +         +    +IS    +
Sbjct: 31  EGGVRAYNMATQERIVRG------RMPTMEIINERFARLFRISLYNFIHRSSEISVGPVR 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KFS  I +       +   +     +       NLV  ++++L G       ++  R 
Sbjct: 85  VMKFSEFIRNLPVPANLNLVQVKPLRGSALFIFDPNLVFMVVDSLFGGDGRFHTRVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E ++ ++ +  +     +   T Q+     E        +       NE V     
Sbjct: 145 FTQTEHRIIQKLLDVVFQTYGKSWETVQKLD--FEFIRSEVNPQFANIATPNEVVVVTTF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            +    V  S  + +P   +     +  S  Q       +  +   +R+     V +   
Sbjct: 203 EVEFTGVGGSIHICMPYAMIEPIREMLYSTMQGDHVIADKRWLHMLSRQIQLAEVELTAV 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +    T ++ V+ ++ G +IP     +    +  +   +  C+ G     Y +++   + 
Sbjct: 263 LGHATTNVEHVLKMRAGDIIPLE--VEDTIQVLVDTVPVMECKYGSSNGQYALKVEKMLA 320

Query: 306 FD 307
            +
Sbjct: 321 TE 322


>gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 322

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 96/297 (32%), Gaps = 12/297 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + ++        +    D++    Q  
Sbjct: 34  SVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVM 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +HS       + A +              LV  L++N  G       ++  R  +
Sbjct: 88  KFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++ +  + Q    L +      E +   E                +E V     ++
Sbjct: 147 PTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHI 204

Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++       + +P   +     +  +  Q+  ++Q E  ++        +NV + T I 
Sbjct: 205 ELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIA 264

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            ++  L+D++ ++ G VIP         ++ ANG   +  +LG       +++ + I
Sbjct: 265 QRQLPLRDILHMRPGDVIPVEL--SDSLVMRANGVPSFKVKLGSHKGKMALQVIEPI 319


>gi|212709505|ref|ZP_03317633.1| hypothetical protein PROVALCAL_00547 [Providencia alcalifaciens DSM
           30120]
 gi|212687843|gb|EEB47371.1| hypothetical protein PROVALCAL_00547 [Providencia alcalifaciens DSM
           30120]
          Length = 335

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 87/307 (28%), Gaps = 10/307 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            N  P  P    R+  +             +   + +         +    DI+  + + 
Sbjct: 33  DNVRPYDPNTQRRVFRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGAIKI 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +     +       +   +              LV   ++NL G       +   +  
Sbjct: 87  EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  R +               +          I     N     N+ V T    
Sbjct: 147 TNTEQRIINRMLKLALGAYRDAWKPIADVEVEYVRSE-IQVKFTNITTSPNDIVVTTPFL 205

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + I N    F + IP   +        +    +   ++E  +     +  +  + +   +
Sbjct: 206 VEIGNTVGEFSICIPIAMIEPLRERLTNPPMEQGHQENEAWVTNLVTQVKRSELELIANL 265

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +  ++ L+ G V+P         I++ +G  + + + G     Y +R+   IN 
Sbjct: 266 VDIPLRISRLLQLQKGDVLPIEKP--DRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINP 323

Query: 307 DQKSLKN 313
              +L  
Sbjct: 324 VLNTLDE 330


>gi|150021178|ref|YP_001306532.1| flagellar motor switch protein FliM [Thermosipho melanesiensis
           BI429]
 gi|149793699|gb|ABR31147.1| flagellar motor switch protein FliM [Thermosipho melanesiensis
           BI429]
          Length = 329

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 98/292 (33%), Gaps = 7/292 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K  E+    L   + + L   F  ++   V ++        +   I S K 
Sbjct: 40  DFLRPRKFSKEQERTLQMLHENFARTLSTYFSGRLRSFVAVNLVGIDQMTYDEFIKSIKN 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
               +  S   +  +  +     +   +LE LLG          NR  +  E ++ ++ +
Sbjct: 100 PSFITIFSAKEFVGSAVLDIDLAIFYGILEILLGGPGSMTE--INRPPTETEIEVMRKEV 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             I   L+Q  +T     P +E        +       NE V  I   + I NV     +
Sbjct: 158 VNILTNLSQAWTTVYSFVPVIEAIET--NPQFVQVVALNEMVLVITFFVNIGNVEGYVNI 215

Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
             P   +             + K +  SE+ +        +  V +   I     TL D+
Sbjct: 216 CWPSSLIEPIGEKLTTQSWFKTKQKVVSEEDMKALKENLARTIVELSATIGETNLTLWDI 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           + L++G VI     ++    +  NGK+ +    G     Y ++I +  + ++
Sbjct: 276 LNLEVGDVIRLNTFKEDPLKIKLNGKDKFLGAPGVFKGKYAVKILEVFDEEE 327


>gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
           16841]
 gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
           16841]
          Length = 326

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 9/312 (2%)

Query: 2   RGQSIHKNTSPLHPILLA--RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
            G+   ++        +     T      K   +    +   Y + L       +   V 
Sbjct: 19  NGELDAEDMKEKDEKQVKNYDFTRPAKFSKEHLRTLEIIFEHYGRLLSTNLPVYLRKTVQ 78

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +   + ++  +S   ++     +    ++S  S +  I  ++NL   +++ +LG     +
Sbjct: 79  VEVMNSEAVTYSEFTNALSNPVLLGLVNVSPLSGSIIIELADNLGYAIVDRMLGGLGTPL 138

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            +   R  S +E  + +R      ++L +  S+  E SP LE        +        E
Sbjct: 139 DKP--RDFSEIELLILERIYNVCVSLLPEPWSSVCEISPRLERIET--NSQFAQIISPTE 194

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTY 236
            +  + +++ I +V     + +P  TL              N  E+  +   D       
Sbjct: 195 MIALVTLHIKIGDVEGLMNICLPYLTLESVMDKLNTKFWYSNLQEHDDKQYTDAIEALIS 254

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +  + +   +     ++ D V L++G +I           +     + ++   G VG NY
Sbjct: 255 KAKIPVKAVLGNSTISVDDFVNLQVGDIIRLDSGVNQDLNIFVGNIKKFTALPGAVGDNY 314

Query: 297 TIRITDRINFDQ 308
            +R+T  +  +Q
Sbjct: 315 AVRVTSVVREEQ 326


>gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 322

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +          R+                +   + ++        +    D++   
Sbjct: 30  SEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGG 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  KF   +HS       + A +              LV  L++N  G       ++  
Sbjct: 84  VQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E ++ +  + Q    L +      E +   E                +E V   
Sbjct: 143 REFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVIS 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ ++       + +P   +     +  +  Q+  ++Q E  I+        +NV + 
Sbjct: 201 TFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWINALKEDVLDVNVPLT 260

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           T I  ++  L+D++ ++ G VIP         ++ ANG   +  +LG       +++ + 
Sbjct: 261 TTIAQRQLPLRDILHMRPGDVIPVEL--SESLVMRANGVPSFKVKLGSHKGKMALQVIEP 318

Query: 304 I 304
           I
Sbjct: 319 I 319


>gi|189911092|ref|YP_001962647.1| flagellar motor switch protein FliM [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775768|gb|ABZ94069.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
          Length = 341

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 102/314 (32%), Gaps = 17/314 (5%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             K           +        K   +    +  ++ +        ++   V +   S 
Sbjct: 32  EQKKVKIYDFKRPDKF------SKNQIRTLQMMHEIFARLATTGLSAQLRALVVVHVASV 85

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
               +   I S       +  ++     +  +    ++  T+++ L G   E+     NR
Sbjct: 86  DQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGESSKV--NR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
            LS +E  + +  I +I   L +  ST  +  P L +       +       N+ V  I 
Sbjct: 144 ELSDIELSVMEGIIVRILGNLRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLIT 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242
           +   +  V     L IP  T+              +  + + ++       +  Q+ + +
Sbjct: 202 LETKVGEVEGMTNLCIPYITIEPIINKLSAQYWYSSIRKGEVDENRAVIQERLDQVKIPL 261

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            + +     +L D++ L +G VI       KT  ++    +  +    GRVG    I+I 
Sbjct: 262 ISEVGSVDISLNDLMNLHVGDVIKLENTPIKTDLMVKVGDRSKFKATPGRVGNRLAIQIG 321

Query: 302 DRINFDQKSLKNFL 315
           D I   +      L
Sbjct: 322 DSI---EDIPDELL 332


>gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
           39073]
 gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
           39073]
          Length = 323

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 98/281 (34%), Gaps = 8/281 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   Y + +       +   + +   S +   +   I S     + +  S
Sbjct: 47  SKEHLRTLYMIHENYGRLVANFLSAYLRASIQVKIVSVEQMTYEDFILSLPTPTLMNVFS 106

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +  +  + N +  +++ L G   E + +  NR L+ +E  + +R  +++   L+
Sbjct: 107 MEPLKGSAVLETNMNFIFPIIDLLFGGRGEMVAR--NRELTEIELHVLRRLNSRMLEQLS 164

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
              S  Q  +P LE+       +       NE V  I M  T+        L +P   L 
Sbjct: 165 YSWSDIQNITPKLENMET--NPQFTQAISPNETVAVITMGTTVGKYEGLLNLCLPYMLLE 222

Query: 208 KTTLISLSSQ----NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
                  +S             D      +   ++ V +   I   +  ++D + L++G 
Sbjct: 223 PVISRLSASHWFATGGEREARPDYRTVVEKILAEVPVELIAYIGRTRLPVRDFIQLQVGD 282

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           VI           L  +G   +  + G V K   +++T+ +
Sbjct: 283 VITLEKTVGEDLELYVDGHHKFQVQPGIVNKKIAVQVTEVV 323


>gi|226944505|ref|YP_002799578.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
 gi|226719432|gb|ACO78603.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
          Length = 350

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 109/330 (33%), Gaps = 19/330 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARL-----TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMD 55
           ++G S  +++SP  P    R+       +    +        +   + ++        + 
Sbjct: 16  LKGVSGEEDSSPSEPADTQRIRPYNPATQHRVIRERLHALDIINERFARYFRMSLFNLIR 75

Query: 56  LDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS 115
              DI+  S +   +S    +       +  ++        +    +LV  +++NL G  
Sbjct: 76  RSADITVDSVRYQSYSDFARNVPVPTNINLLAMKPLRGTALVVFPPSLVFMVVDNLFGGD 135

Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
              + +   R  +  E+++ +R +            +       ++        K     
Sbjct: 136 GRFLTKSEGREFTHTEQRIIRRLLGLALEAYQSAWKSVYPLE--IDYLRSEMQAKFANIT 193

Query: 176 -LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFAR 233
              NE V     ++ + N+AS F +++P   +     +     N S  ++        A 
Sbjct: 194 SSPNEIVINSTFHLEVGNLASDFNIVMPYLMIEPLRSLLNGPLNDSHPDEERQWGKRMAS 253

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q  + +          +  V+ LK+G V+P         +   +G  +  CE G   
Sbjct: 254 EIKQSQIELIADFAGIDLCIGQVMALKVGDVLPIELP--ETVVARVDGVPVMRCEYGSRN 311

Query: 294 KNYTIRITDRIN--------FDQKSLKNFL 315
               +++ + I+          ++ +K  L
Sbjct: 312 GQRALQVKELIDHSSANAGATTERFIKGSL 341


>gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea
           MMB-1]
 gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea
           MMB-1]
          Length = 329

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 97/285 (34%), Gaps = 7/285 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D+S    Q  KF   +H+       +      
Sbjct: 48  RMPTLEMINERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRP 107

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
             S         LV  L++N  G       ++  R  +  E ++ +  + Q+   L +  
Sbjct: 108 LRSTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAW 166

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           +   +    LE                +E V     ++ ++       + +P   +    
Sbjct: 167 APVLKLE--LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVR 224

Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  + + +       +    ++VN+   I  KK TL DV+  K G VIP   
Sbjct: 225 ELLDAGVQSDVDEKDDRWGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEM 284

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKN 313
                  + AN    +  +LG     Y++++ + I    ++SLKN
Sbjct: 285 P--EYVTVRANNVPTFRGKLGSSNGKYSVQMKESIKAQMKESLKN 327


>gi|330808225|ref|YP_004352687.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376333|gb|AEA67683.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 322

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 94/277 (33%), Gaps = 6/277 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q    L +  
Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
               E +   E                +E +     ++ ++       + +P   +    
Sbjct: 169 QAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++Q E  I+   +    ++V I   +  ++  L+D++ ++ G +IP   
Sbjct: 227 EMLDAGFQSDLDDQDERWINALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDIIPVEM 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            E    ++ ANG   +  ++G    N  +++ + I  
Sbjct: 287 PED--MVMRANGVPAFKVKMGSHKGNLALQVIEPIER 321


>gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
 gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
          Length = 322

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 95/299 (31%), Gaps = 12/299 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +          R+                +   + ++        +    D++    Q  
Sbjct: 34  SVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQGM 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +HS       +   +              LV  L++N  G       ++  R  +
Sbjct: 88  KFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++ +  + Q    L +      E +   E                +E +     ++
Sbjct: 147 PTELRVVRMVLEQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHI 204

Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++       + +P   +     +  +  Q+  ++Q E  +         ++V +   + 
Sbjct: 205 ELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVA 264

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            ++  L+D++ ++ G VIP         I+ ANG   +  +LG    N  +++ + IN 
Sbjct: 265 RRQLRLRDILHMQPGDVIPVELP--QEMIMRANGVPSFKVKLGSHKGNLALQVIEPINR 321


>gi|229591843|ref|YP_002873962.1| flagellar motor switch protein FliM [Pseudomonas fluorescens SBW25]
 gi|229363709|emb|CAY51095.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
          Length = 322

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 91/277 (32%), Gaps = 6/277 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q    L +  
Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
               E +   E                +E +     ++ ++       + +P   +    
Sbjct: 169 QAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++Q E  +         ++V +   +  ++  L+D++ ++ G +IP   
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDIIPVEL 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 I+ ANG   +  +LG    N  +++ + I  
Sbjct: 287 P--EEMIMRANGVPSFKVKLGSHKGNLALQVVESITR 321


>gi|303248092|ref|ZP_07334357.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans
           JJ]
 gi|302490491|gb|EFL50399.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans
           JJ]
          Length = 326

 Score =  234 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 89/297 (29%), Gaps = 10/297 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                        R+            +   +   + +         M    D++  S  
Sbjct: 32  DSGVVVFDLSNQDRIIRG------RMPVLEIINDRFARLASNAMANAMRKRADVNPISID 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF   + S       +   L     N  +   + LV  ++E+  G +     ++  R 
Sbjct: 86  MSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVDSRLVFAMVESFFGGAGSQP-KIEGRD 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E+ +  R +      + +      E   ++E        +       ++ V  +  
Sbjct: 145 FTPIEQAIINRVVRIALENMEESWQPVHEV--HIELVRSEVNPQFAAIVPPSDVVIVVTF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +EN   S ++ +P  T+         S Q +        I  F  +  +  V +  R
Sbjct: 203 EVELENAIGSLIVCLPYATIEPIRTKLYASFQTERLEVDHAWIARFKERLMETPVEMLVR 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
               + T + +++LK G +I   +           G   +    G V  N   +I  
Sbjct: 263 FGRSQVTGRQLLSLKPGDIIMLDNDVDALLEAEVQGVRKFRGIPGLVKSNKAFQIVK 319


>gi|192360300|ref|YP_001982201.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107]
 gi|190686465|gb|ACE84143.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107]
          Length = 339

 Score =  234 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 97/298 (32%), Gaps = 12/298 (4%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
                     R+                +   + ++        +    D+S    Q  K
Sbjct: 33  VRAYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRTADVSVGGVQIQK 86

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           F   +H+       +            I     LV  L++N  G       ++  R  + 
Sbjct: 87  FGEYVHTLYVPTSLNMVKFRPLRGTALIILDARLVFKLVDNFFGGDGR-HAKIEGREFTP 145

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E ++ +  + Q    L +          + E  +             +E V     ++ 
Sbjct: 146 TELRVVQMVLNQAFVDLGEAWKAVFPV--SFEYVHSEVNPSLANIVSPSEVVVVSTFHIE 203

Query: 190 IENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
           ++       + +P   +     +  +  Q+ SE Q E  +           V+++  +  
Sbjct: 204 LDGGGGEMHITVPYSMIEPIREVLDAGLQSDSEEQDERWVRALREDVLAAKVDLECDVVR 263

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +  TL+D+V LK G +IP         +++ANG  ++  +LG+   N  ++I + I+ 
Sbjct: 264 RDITLRDIVDLKEGDIIPVEFP--DYHVVTANGVPMFRTQLGQHNDNLALKILEFIDR 319


>gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
 gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
          Length = 329

 Score =  234 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 106/309 (34%), Gaps = 14/309 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q   K           R        K   +  + +   + + L   F  ++   V  S  
Sbjct: 30  QEEEKKVRQYDFKRAVRF------SKDQIRSLTRIHEHFTRMLTTFFSAQLRTYVQFSVN 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S +   +   IHS     + +       +  F I  + N+   +L+ LLG     + ++ 
Sbjct: 84  SVEQLPYDEFIHSIPSMTMINLIEAPPLNGRFIIEVNPNISYAMLDRLLGGPGVEMDKIE 143

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
           +   + +E ++  +   +  +       +  E    +         +       NE V  
Sbjct: 144 S--FTEIEMRILTQLYKRAFSTYGDAWESIAEIKAEMSAVEV--NPQFLQLVSPNETVVL 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS----SQNKSENQSEDLIDPFARKTYQLN 239
           I++ +TI  V+ +  + +P  T+        S     +    N S+   +P   +     
Sbjct: 200 ISIGVTIGEVSGTINVCLPFVTIEPVLSKLSSHYWMQEANRRNASQSSKEPLKAQLMNST 259

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V + + +     T  D++ L++G  +      K    +     +++  ++G  GK   ++
Sbjct: 260 VEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEPLSVMVGENKVFKGQVGVSGKRMAVQ 319

Query: 300 ITDRINFDQ 308
           +  R+  ++
Sbjct: 320 VLHRVKEEE 328


>gi|300722647|ref|YP_003711937.1| flagellar motor switch and energizing protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629154|emb|CBJ89750.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus nematophila ATCC 19061]
          Length = 335

 Score =  234 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 84/303 (27%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S      P  P    R+  +             +   + +         +    DI+  +
Sbjct: 30  SGESEVRPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L             +LV   ++NL G       ++  
Sbjct: 84  IKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFEPSLVYIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +            +  +          +     N     N+ V T 
Sbjct: 144 REFTYTEQRIINRMLKLALDAYRDAWDSIFKIEVEYVRSE-MQVKFTNITTSPNDIVVTT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNID 243
              + I  +   F + IP   +        +   ++   +         ++     + + 
Sbjct: 203 PFQVEIGALTGEFNICIPFAMIEPLRERLTNPPVENLRQEDGQWRKSLVKQVQHSELELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I+  +G  +   + G +   Y +R+   
Sbjct: 263 ANFVDIPLRLSKILELKAGDVLPIEKP--ERLIVHVDGVPVLISQYGTLHGQYALRVEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|238924157|ref|YP_002937673.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC
           33656]
 gi|238875832|gb|ACR75539.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC
           33656]
 gi|291524890|emb|CBK90477.1| flagellar motor switch protein FliM [Eubacterium rectale DSM 17629]
          Length = 326

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 103/308 (33%), Gaps = 13/308 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++  +          ++        K   +    +   Y + L       +   V +   
Sbjct: 29  ENSEQTVKDYDFARPSKF------SKEHLRTLEIIFEHYGRLLTTNLPVYLRKSVQVEVM 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + ++  +S   ++     +    + +    N  +  ++ L   +++ +LG   +++ +  
Sbjct: 83  NSEAVTYSEFTNALSNPVLLGIVNFAPLHGNIIVEMASGLGYAIVDRMLGGRGDSLDKT- 141

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  S +E  + +R +     +L +      + SP+LE        +       +E +  
Sbjct: 142 -REFSEIELLIIERILVICINLLQEPWQNVLDISPHLERIET--NSQYAQIISPSEVIAI 198

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
           I MN+ I +V     + +P  TL              N   +   +  +       +  +
Sbjct: 199 ITMNIKIGDVEGLMNICLPYITLESVIDKLNTRYWYSNIQNHDETNYRNAIESLIQKSQI 258

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     ++KD  TL  G VI           +     + ++   G  G  Y +RI
Sbjct: 259 PVKAVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTALPGSSGDKYAVRI 318

Query: 301 TDRINFDQ 308
           T  +  +Q
Sbjct: 319 TSVVREEQ 326


>gi|222147563|ref|YP_002548520.1| flagellar motor switch protein [Agrobacterium vitis S4]
 gi|221734551|gb|ACM35514.1| flagellar motor switch protein [Agrobacterium vitis S4]
          Length = 319

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 169/305 (55%)

Query: 11  SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
            P+   LLARLTG LGD K++EK+    G LY +FLP +F  + +L +++ Y   +SG  
Sbjct: 14  KPMDHALLARLTGGLGDMKSVEKLCQDFGQLYSEFLPDVFHSETNLTIEVGYLGFKSGLM 73

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
             +I S  +NFV +  SL +WS NF + C N  VITL+E LLG   E I +   R LS +
Sbjct: 74  RDLIASLGDNFVLANTSLRNWSQNFVMACGNGFVITLMETLLGGMQEFIGEPIKRPLSNI 133

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           E  LA     +I+ VL   ++ T    P  E  ++ +   +       EF   ++M++ +
Sbjct: 134 ELDLAVMVFERIANVLRSGVNATGGFEPIFERPHNWENRLRQDGEQIEEFGALVHMSIKL 193

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
             + S F LIIPQ+TLLKT + +  S+N+     ++  +  A +  +  V ++ RI+L+ 
Sbjct: 194 GKITSDFALIIPQKTLLKTNVTAPKSKNQVSKARKEWAEQLAEQVRKSQVTLEGRISLQS 253

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +L  V  L  G VIPFL +      +SANG+++Y+CE GR G +YT+R+    + D + 
Sbjct: 254 LSLLTVSKLAAGDVIPFLEKGDVTVDVSANGRDLYTCEFGRAGDHYTVRVKSMHSTDSEL 313

Query: 311 LKNFL 315
           L++ +
Sbjct: 314 LRHLM 318


>gi|291529031|emb|CBK94617.1| flagellar motor switch protein FliM [Eubacterium rectale M104/1]
          Length = 326

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 103/308 (33%), Gaps = 13/308 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++  +          ++        K   +    +   Y + L       +   V +   
Sbjct: 29  ENSEQTVKDYDFARPSKF------SKEHLRTLEIIFEHYGRLLTTNLPVYLRKSVQVEVM 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + ++  +S   ++     +    + +    N  +  ++ L   +++ +LG   +++ +  
Sbjct: 83  NSEAVTYSEFTNALSNPVLLGIVNFAPLQGNIIVEMASGLGYAIVDRMLGGRGDSLDKT- 141

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  S +E  + +R +     +L +      + SP+LE        +       +E +  
Sbjct: 142 -REFSEIELLIIERILVICINLLQEPWQNVLDISPHLERIET--NSQYAQIISPSEVIAI 198

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
           I MN+ I +V     + +P  TL              N   +   +  +       +  +
Sbjct: 199 ITMNIKIGDVEGLMNICLPYITLESVIDKLNTRYWYSNIQNHDETNYRNAIESLIQKSQI 258

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     ++KD  TL  G VI           +     + ++   G  G  Y +RI
Sbjct: 259 PVKAVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTALPGSSGDKYAVRI 318

Query: 301 TDRINFDQ 308
           T  +  +Q
Sbjct: 319 TSVVREEQ 326


>gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
 gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
          Length = 334

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 99/289 (34%), Gaps = 7/289 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +    +   + + L      ++   VD    S +   +   I S  E
Sbjct: 40  DFRRPDKLSKEQMRTLEMIHENFARILTTTLSTQLRSRVDFEVASIEQLTYEEFIRSLPE 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             +   + +  ++  F    + ++   +++ L G     + ++  R+ + +EK + ++ I
Sbjct: 100 PTIIGISEMEPFNGQFIFEINPDIGFAIIDRLFGGMGNPLDRV--RTYTDIEKVVLRKVI 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
           +   + L +         P L         +      SN+    I M+  I N      +
Sbjct: 158 SWFLSGLPEAWENIIRVKPRLR--EIESNPQFTQVVPSNDMTILITMSAKIANSEGLVNV 215

Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            IP   +              N  E ++   I+   +K  +  + +   +   + T+ D+
Sbjct: 216 CIPYIMIEPIVPQLNAQQWFSNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDL 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           + L+ G VI    + +    +       +    G   K+  ++ITD I+
Sbjct: 276 LYLQPGDVIRLDKKAEEKVDIRIGKNVKFQGVAGVSNKHMAVKITDVIS 324


>gi|326204614|ref|ZP_08194470.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM
           2782]
 gi|325985181|gb|EGD46021.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM
           2782]
          Length = 328

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 95/281 (33%), Gaps = 7/281 (2%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
           ++    +   Y + +       +   V +   S  + ++S   +S     +      +  
Sbjct: 52  KRTLQFINENYARLVQSFLSGYLRSLVQVDVLSVDALQYSEFSNSLANPIILGIVDFTPL 111

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
           + +       ++   L++ +LG    ++ ++  RS + +E  + +R I QI  ++ +   
Sbjct: 112 NGSVIFEMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMREPWE 169

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
           +     P LE        +       NE V  I +N+ +  V     + IP  T+     
Sbjct: 170 SIIAIKPRLEKIET--NAQFAQIIHPNEMVALITLNVVVGEVKGMINICIPHMTVEPIMP 227

Query: 212 ISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
                    N    + E        K     V +   +     ++ + + L+ G V+P  
Sbjct: 228 KLSTKLWFTNVENEKIEHNKSDIEFKIEHTYVPVRAVLGKTSISISEFLDLQSGDVLPLD 287

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                   +       ++ + G       ++IT+ +  ++ 
Sbjct: 288 TNVNGDLEILVGDLPKFNAKPGVKKNKVAVKITEVLRREED 328


>gi|168187522|ref|ZP_02622157.1| flagellar motor switch protein FliM [Clostridium botulinum C str.
           Eklund]
 gi|169294580|gb|EDS76713.1| flagellar motor switch protein FliM [Clostridium botulinum C str.
           Eklund]
          Length = 331

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 101/285 (35%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   + + +      ++  +V ++  + Q   +   IHS     + +   
Sbjct: 48  SKDHIRTLELIHDNFARIISNYLTAQVRTNVKVNIETVQQITYEEFIHSVPNPTILTVFK 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +   S +     +      +++ LLG S     +   R L+ ++K + K+    +   L 
Sbjct: 108 MPPLSGSILFETNPQFAYQIIDVLLGGSGTGQYKT--RELTDIDKNIIKQINNGLITNLK 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                  E  P +E          N     NE V  I  ++ +   ++   + IP  ++ 
Sbjct: 166 LAWEDVMEVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIE 223

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           K           +  +    E   +   ++   + + +   +   K  +++ ++L IG V
Sbjct: 224 KVLDKLVVQYWFRENNVESLEGSKEKLKKRMKVVELPMSVVLGSTKLDVREFLSLCIGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I       +   +    +     + G VGKN  ++I D I+ D +
Sbjct: 284 ITLDALTSSPVKVMVEDEPYLLAKPGIVGKNKGVQILDIIDKDVE 328


>gi|288962686|ref|YP_003452980.1| flagellar motor switch protein [Azospirillum sp. B510]
 gi|288914952|dbj|BAI76436.1| flagellar motor switch protein [Azospirillum sp. B510]
          Length = 374

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 105/302 (34%), Gaps = 3/302 (0%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
             + RL       K    +   +     + L    ++    +V+ S +  +  +++    
Sbjct: 74  SAIQRLVSSTTVNKDRLPMLDVVFDRMVRMLNTSLRQFASTNVEASLSKIEWLRYTDFQD 133

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           + +   +   A    W +   +   + L+  +++ LLG       ++  R+ +++E+K+ 
Sbjct: 134 AIELPALIGVARAEPWDNQMLVTIDSALIYCMMDVLLGGRRSRPGRIDGRAYTSIERKMT 193

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +R +  +   L Q      +     +        +  T   +   +  + + + +E    
Sbjct: 194 ERMMKVVLQDLGQSFDPLAQVDFVFDRLEV--NPQFATITRATNAIIRVRIAVEVERRTG 251

Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              ++IP  TL       +     +              +  +  + +   +   K  L 
Sbjct: 252 HIDIVIPYATLEPIRGKLVQMFMGEKFGHDTVWESHLKNELMRSKLELVAVLAETKVPLG 311

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           +V+  + GQ +       +  ++ +    +++  +G+   N  ++I   ++  Q+ +   
Sbjct: 312 EVLAWQKGQSLKLRISPDSTVMVFSKTIPLFAGHMGQRNDNIAVKIDTDLDTKQELIDGL 371

Query: 315 LH 316
           L 
Sbjct: 372 LS 373


>gi|291538507|emb|CBL11618.1| flagellar motor switch protein FliM [Roseburia intestinalis XB6B4]
          Length = 326

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 97/292 (33%), Gaps = 7/292 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +    +   Y + L       +  +V +   + ++  +S   ++   
Sbjct: 39  DFARPAKFSKEHLRTLEIIFEHYGRLLSTNLPVYLRKNVQVEVMNSEAVTYSEFSNALSN 98

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             +    + S  + +  I  + NL   +++ +LG     + +   R  S +E  + +R  
Sbjct: 99  PVLLGIVNASPLNGSIVIEMAQNLGYAVVDRMLGGKGVPLDKP--RDFSEIELLIIERIF 156

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
                +L +      E  P LE        +        E +  + +N+ I +V     +
Sbjct: 157 NVAVDLLVEPWENVCELEPRLERIET--NSQFAQIISPTEMIALVTLNVKIGDVEGLLNV 214

Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +P  TL              +  E   +   +       +  + I   +     ++ D 
Sbjct: 215 CLPYLTLESIMDKLNTKYWYSSLQEKDEQQYTETIEALISKAPMPIKAVLGNSSISVNDF 274

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           + L++G +I    +      +     + ++   G  G +Y +RIT  I  +Q
Sbjct: 275 LGLQVGDIIRLDTKVDQELSVFVGSIKKFTALPGETGDDYAVRITSVIREEQ 326


>gi|261344127|ref|ZP_05971771.1| flagellar motor switch protein FliM [Providencia rustigianii DSM
           4541]
 gi|282567719|gb|EFB73254.1| flagellar motor switch protein FliM [Providencia rustigianii DSM
           4541]
          Length = 335

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 89/307 (28%), Gaps = 10/307 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            N  P +P    R+  +             +   + +         +    DI+  + + 
Sbjct: 33  DNVRPYNPNTQRRVFRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGAIKV 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +     +       +   +              LV   ++NL G       +   +  
Sbjct: 87  EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  R +               +          I     N     N+ V T    
Sbjct: 147 TNTEQRIINRMLKLALNAYRDAWRPIADVEVEYVRSE-IQVKFTNITTSPNDIVVTTPFL 205

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTRI 246
           + I N    F + IP   +       ++   +    ++E  +     +  +  + +   +
Sbjct: 206 VEIGNTVGEFSICIPIAMIEPLRERLINPPTEQGHQENEAWVTNLVTQVKRSELELVANL 265

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +  ++ L+ G V+P         I++ +G  + + + G     Y +R+   IN 
Sbjct: 266 VEIPLRISSLLQLQKGDVLPIDKP--DRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINP 323

Query: 307 DQKSLKN 313
              +L  
Sbjct: 324 VLNTLDE 330


>gi|302037615|ref|YP_003797937.1| flagellar motor switch protein FliM [Candidatus Nitrospira
           defluvii]
 gi|300605679|emb|CBK42012.1| Flagellar motor switch protein FliM [Candidatus Nitrospira
           defluvii]
          Length = 323

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 86/276 (31%), Gaps = 3/276 (1%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + +     +   +   ++ S    Q  KF   I        F+  ++  
Sbjct: 50  RMPTMEMINDRFTRQQSISWSAVLREKIEFSVLGTQIMKFGDFIQKVPVPSSFNLFAMEP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
              N        LV  +++   G   +T  +   R  +T++ +L K+ + Q  A L +  
Sbjct: 110 MRGNGLFVMDAMLVYLIVDFFFGGKVQTHVKPEGREFTTIQLRLIKKLVQQALADLEKAW 169

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                    +         +      ++E V  + + + + +++    +  P   L    
Sbjct: 170 QAVMPVK--IGYLRSESNPQFAMVVTTSEIVVVVTLQVHLGDISREMFIAYPYSMLEPIK 227

Query: 211 LISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
               S     +  Q       F     + +V +  ++   +  ++D++    G V+    
Sbjct: 228 EKLYSGLFADNVEQDSSWGSRFKDSLQECDVALTVQLGTARINVQDLLNFNPGDVLMLDQ 287

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                 +    G   +  + G    N+  R+T  + 
Sbjct: 288 HPGDPMLCLVEGDPKFQGQPGIFKGNHACRVTKILG 323


>gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
           255-15]
 gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
           255-15]
          Length = 327

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 108/311 (34%), Gaps = 14/311 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +R Q   +           R        K   +  + +   + + L   F  ++   V  
Sbjct: 27  IRSQEEERRVKVYDFKRALRF------SKDQMRNLTRIHEQFARVLTTHFSAQLRTYVQF 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  + +   +   IHS     + +  +L           + N+   +L+ LLG   E + 
Sbjct: 81  TVNTVEQLPYDEFIHSIPNMTLINLVNLHPLDGRVIFEVNPNIAYAMLDRLLGGPGEGMN 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++ N  L+ +E ++  +   +          +  E     E        +       NE 
Sbjct: 141 KIEN--LTEIETRILTQLFKRAFVQYGAAWESIAEIEA--EYDDLEINPQFLQLVSPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQNKSENQSEDLIDPFARKTY 236
           V  +++ +T+  V+ +  + +P  TL        S     Q K ++      +    +  
Sbjct: 197 VILVSIYVTVGEVSGTLNVCLPFVTLEPIIPKLSSHFWMQQEKRKSADNQESEHMQTQLM 256

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
              V++   +   + +  +++ L++G  +    R      L  + ++++    G  GK+ 
Sbjct: 257 GSIVDLKAVLGQTELSFGELLHLEVGDCLSLQTRTSDPVELFVDDRKMFKARPGLNGKHL 316

Query: 297 TIRITDRINFD 307
            +++  RI  +
Sbjct: 317 ALQVLQRIEEE 327


>gi|116328061|ref|YP_797781.1| flagellar motor switch protein FliM [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331486|ref|YP_801204.1| flagellar motor switch protein FliM [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120805|gb|ABJ78848.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125175|gb|ABJ76446.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 341

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 103/315 (32%), Gaps = 17/315 (5%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S  K           +        K   +    +   + +        ++   V +   S
Sbjct: 31  SEQKKVKIYDFKRPDKF------SKDQIRTLQMMHETFARLATTGLSAQLRALVSVHVAS 84

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
                +   I S       +  ++     +  +    ++  T+++ L G   E      +
Sbjct: 85  VDQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGEQAK--IS 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R LS +E  + +  I +I   + +  ST  +  P L +       +       N+ V  I
Sbjct: 143 RELSEIEMSVMEGIIVRILGNMRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLI 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVN 241
            +   I  V     L IP  T+              +  + + ++       +  Q+ + 
Sbjct: 201 TLETKIGEVEGMTNLCIPYITIEPIINKLSAQYWYSSIRKGELDENRAVIQERLDQVAIP 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           +   +     ++ D + L +G V+   +   ++  I+    ++ + C  GRVG    I+I
Sbjct: 261 LIAEVGSVDVSINDFMNLSVGDVVKLENTSTRSEMIVKVGERKKFKCLPGRVGSRLAIQI 320

Query: 301 TDRINFDQKSLKNFL 315
            DR+   +      L
Sbjct: 321 GDRV---EDIPDELL 332


>gi|226327727|ref|ZP_03803245.1| hypothetical protein PROPEN_01600 [Proteus penneri ATCC 35198]
 gi|225203431|gb|EEG85785.1| hypothetical protein PROPEN_01600 [Proteus penneri ATCC 35198]
          Length = 343

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 88/308 (28%), Gaps = 10/308 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+  +             +   + +         +    DI+    +
Sbjct: 40  EPDIQPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIK 93

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L             NLV   ++NL G        +  R 
Sbjct: 94  IHPYHDFARNLPVPTNLNLVHLKPLRGTALFTFEPNLVYIAVDNLFGGDGRFPIPVEGRE 153

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  + +            +  +          +     N     N+ V T   
Sbjct: 154 FTNTEQRIINKMLKLALDAYRDAWDSIFKIQVEYVRSE-MQVKFTNITSSPNDIVVTTPF 212

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245
            + I ++   F + IP   +       ++   ++   +    +D    +     + +   
Sbjct: 213 QVEIGSMVGEFSICIPFAMIEPLRERLINPPIENVRQEDGVWLDSLVNQVQHSELELVAN 272

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  V+TLK G VIP         I   +G  + + + G V   Y +R+   IN
Sbjct: 273 FTDIPLRLSKVLTLKEGDVIPIDKP--ERLIAHVDGVPVLTSQYGTVNGQYALRVEHLIN 330

Query: 306 FDQKSLKN 313
               +L  
Sbjct: 331 PVLNALDE 338


>gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
           3776]
 gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
           3776]
          Length = 375

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 100/292 (34%), Gaps = 5/292 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +   +L   + +         +   V++   S     +S  + S +    F+   
Sbjct: 60  SKEQMRAFQALHEGFSREFGAALSGMLRAIVEVKLISVDQLTYSEFVFSLENPTCFNLLE 119

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                 +  +  S +++  +++ LLG   E+IP + +R L+ +E +L  R    +   L 
Sbjct: 120 SKGLEGHLILDLSPSIIFPIVDRLLGGGKESIPSIPSRPLTEIELQLVSRITLLVINGLE 179

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                       L+        +       NE +  ++  +T+  V     L IP  T+ 
Sbjct: 180 NAWHNVCSL--GLKVTQIESNPQLVQIVPPNEVIVLVSFEITMGEVRGIMNLCIPFNTIE 237

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +        S  + +               +  V +   +   + T +D+  L +G V
Sbjct: 238 PLSGKLSSDTWSAYQKKGLDPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLAHLAVGDV 297

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           I   H ++    +   G  ++  + G V     IR+T  +   +  L+  L 
Sbjct: 298 IMTEHPKEDGLEVVVEGCPMFMAKPGAVKGKKAIRVTGMVAHSRDILREKLQ 349


>gi|220929456|ref|YP_002506365.1| flagellar motor switch protein FliM [Clostridium cellulolyticum
           H10]
 gi|219999784|gb|ACL76385.1| flagellar motor switch protein FliM [Clostridium cellulolyticum
           H10]
          Length = 328

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 7/281 (2%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
           ++    +   Y + +       +   V +   S  + ++S   +S     +      +  
Sbjct: 52  KRTLQFINENYARLVQSFLSGYLRSLVQVDVLSVDALQYSEFSNSLANPVILGIVDFTPL 111

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
           + +       ++   L++ +LG    ++ ++  RS + +E  + +R I QI  ++ +   
Sbjct: 112 NGSVIFEMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMREPWE 169

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
           +     P LE        +       NE V  I +N+ +  V     + IP  T+     
Sbjct: 170 SIIAIKPRLEKIET--NAQFAQIIHPNEMVALITLNVVVGEVKGLINICIPHITVEPIMP 227

Query: 212 ISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
                    N    + E        K     V +   +     ++ + + L+ G V+P  
Sbjct: 228 KLSTKLWFTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGDVLPLD 287

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                   +       +  + G       I+IT+ +  ++ 
Sbjct: 288 TNVNGDLEILVGDLPKFKAKPGVKKNKVAIKITEVLRREED 328


>gi|299131782|ref|ZP_07024977.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2]
 gi|298591919|gb|EFI52119.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2]
          Length = 399

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 102/293 (34%), Gaps = 4/293 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +F+  
Sbjct: 86  DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFADY 145

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V +      W +       ++L+ ++++ LLG    +T  ++  R  +T+E 
Sbjct: 146 LNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIET 205

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR +  + A   Q        +  ++        +             + + + +E+
Sbjct: 206 NLVKRLVEVVLADAEQAFRPLSPVTFTIDRLET--NPRFAAISRPANAAILVRLRVDMED 263

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + L     +   +        A +  +  + +D  +     
Sbjct: 264 RGGNVELLLPYATIEPIRNVLLQMFMGEKFGRDPIWEGHLATEIAKAEMYVDAVLYEADM 323

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            LK +++LK+G  +P   R      +      +    +GRVG    IR++  +
Sbjct: 324 PLKQLMSLKVGDTLPLDIRPDAMVSVRCGDVTLSEGRMGRVGDRVAIRVSKPL 376


>gi|58039165|ref|YP_191129.1| flagellar motor switch protein FliM [Gluconobacter oxydans 621H]
 gi|58001579|gb|AAW60473.1| Flagellar motor switch protein FliM [Gluconobacter oxydans 621H]
          Length = 343

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 103/306 (33%), Gaps = 10/306 (3%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
           T       + R+    G       +   +   + + L    +     +V+ S     S +
Sbjct: 30  TGAADSSGIERVVSTSGVSSERLPMLEVVFDRFTRILTTSLRNFTSDNVEASMDRLGSQR 89

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-------TIPQL 122
           F   + +     +F+      W +   +  S++L+ ++++ LLG              + 
Sbjct: 90  FGDYLENVPGQAMFAVFKAEEWDNYGVVVLSSSLIYSIVDALLGGHVRGDSALTAPASRQ 149

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  + +E+ L +  +  I   L    S     + + E        +      +   V 
Sbjct: 150 TGRHHTAIERALIEPMVRIILDDLETSFSPLCAVNFHFERLEM--NSRFAMICRAGNGVV 207

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVN 241
           T    + +E       +++P  TL     I L     +         +  AR+ +Q ++ 
Sbjct: 208 TARFGIDMEGRGGDVDIVLPHATLEPVRDILLQQFMGEKFGHDGIWENHLARELWQTDLT 267

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +D  +  +   LKD++ L  G  +    +      L      +++  +GR      ++I 
Sbjct: 268 LDAVLEEQTMNLKDIMKLAPGDQLVLRRKPDASVSLRCGEHVLFTGRVGRKQGQVAVKIE 327

Query: 302 DRINFD 307
           D +N  
Sbjct: 328 DVLNQK 333


>gi|220905099|ref|YP_002480411.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869398|gb|ACL49733.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 326

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 86/297 (28%), Gaps = 10/297 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                        R+            +   +   + +         +   V+++  S  
Sbjct: 32  DSGIVAFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNSVRKRVELNPISID 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF   + S       +   +     N  +   + LV  L+E++ G +     ++  R 
Sbjct: 86  MTKFGEFMRSLPVPTSINIFKMDPLRGNAIMVVDSRLVFALVESVFGGAGSQP-KVEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E+ +  + +      + +      +    L         +       ++ V  I  
Sbjct: 145 FTRIEQAVVDKIVKIALDNMEESWRPVHDVKLELVR--SEINPQFAAIVPPSDVVVVITF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + ++    S ++ +P  T+         S Q +        +     +  +  V +   
Sbjct: 203 EVELDTALGSMIICLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLMETPVELKVC 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                 T   ++ +++G ++     E+     +  G   Y    G +    + +I  
Sbjct: 263 FGKTTITGNQLLRMQVGDILVLDKDEEDMLDCTVAGVCKYQGIAGTIKAMKSFQIIK 319


>gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
 gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
          Length = 331

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 107/309 (34%), Gaps = 13/309 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +   +   P       +        K   +    +   Y + +      ++  +V +   
Sbjct: 30  EEEKQKVKPYDFRSPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRTNVKVKVE 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S Q   +   IHS     V +   +   S +     +   V  +++ LLG + +   ++ 
Sbjct: 84  SVQQITYEEFIHSVPNPTVLTIFKMPPLSGSVLFEVNPQFVFQIIDLLLGGNGKGKYKV- 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            +  + ++K + K   A + + L             +E          N     N+ V  
Sbjct: 143 -KEFTDIDKNIIKVVNAGLISNLKLAWEDVMPIETEVEGLET--NPALNQTLAPNDPVAL 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
           I  ++ + N ++   + IP  ++ K           Q+  E+   +  +    +   ++V
Sbjct: 200 ITFSVEMGNSSTFINICIPYLSIEKVLDKLVVQYWFQDSDEDILNESREKLRNRLDIVDV 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     T+++ + L +G V+    +  +   L    K  Y  + G + KN  + I
Sbjct: 260 ELTAILGTVDVTVQEFLNLNVGDVLTLKEKTTSPVKLMVEDKVYYYGKPGVIDKNMGVEI 319

Query: 301 TDRINFDQK 309
            D ++ D +
Sbjct: 320 LDILDKDVE 328


>gi|289578422|ref|YP_003477049.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus
           Ab9]
 gi|297544698|ref|YP_003677000.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528135|gb|ADD02487.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus
           Ab9]
 gi|296842473|gb|ADH60989.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 332

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 92/285 (32%), Gaps = 8/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       +   V+++  S     +    +S       +   
Sbjct: 50  SKEQLRTLQMIFENLTRSLTSFLSGYLRTVVNVTVISVDQLTYYEFSNSLNNPVFIAIID 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
            +     F +  +NN    +L+ +LG   +   +L +R  + +E  L  + + Q+  +  
Sbjct: 110 AAPLEGPFLLEFNNNTTYAILDRILGGIGK--GELVDRDYTEIEISLLTKIVKQMLPLFK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +      + +P+L         +       NE V    +++ I          +P  TL 
Sbjct: 168 EPWGNIVDINPSLVRVET--NSQFAQIISPNETVALCTLSLKINETEGMMNFCMPHLTLE 225

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                        +  +       +    K  +  + +  ++     T+K+ +  +IG +
Sbjct: 226 PIVPKLTTKFWFSSLKKEGRVS-PELIKSKISKTYIPLTAQLGSTTITVKEFLNFEIGDI 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I      K    +  +    +    G     Y+++IT+ I    +
Sbjct: 285 ILLDKNFKDPVDIIIDKNVKFRGIPGIRNNKYSVKITEVIYKGDE 329


>gi|209884529|ref|YP_002288386.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans
           OM5]
 gi|209872725|gb|ACI92521.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans
           OM5]
          Length = 398

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 4/300 (1%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                      +  +            +   +     + +    +     +V++S     
Sbjct: 78  DSEVHLEDHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRIT 137

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNR 125
           S +F+  ++S     V +      W +       ++L+ ++++ LLG    +T  ++  R
Sbjct: 138 SVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRGQTSLRIEGR 197

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +T+E  L KR +  + A   Q        +  ++        +             + 
Sbjct: 198 PYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFTIDRLET--NPRFAAISRPANAAILVR 255

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + + +E+   +  L++P  T+     + L     +   +        A +  Q  + +D 
Sbjct: 256 LRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMGEKFGRDPIWEGHLATEIAQAELYVDA 315

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +   +  LK +++L++G  +P   R      +     ++    +GRVG    IR++  +
Sbjct: 316 VLYEAEIPLKQLMSLQVGDTLPLDIRPDALVSVRCGDVKLSEGRMGRVGDRVAIRVSKPL 375


>gi|163794148|ref|ZP_02188121.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199]
 gi|159180762|gb|EDP65281.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199]
          Length = 341

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 103/302 (34%), Gaps = 4/302 (1%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                      +  +            +   +     + +    +     +V++S  +  
Sbjct: 41  EAGDGDGDTSGIHAIVNSALVSYERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDNIT 100

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNR 125
           S +F   ++S     + S      W +   +   + L+ ++++ LLG        ++  R
Sbjct: 101 SIRFGDYLNSIPLPAMLSVFKAEEWDNFGLLVVDSALIYSIVDVLLGGRRGTAAMRIEGR 160

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +T+E+ L +R +  + + L+         +   +        +  T            
Sbjct: 161 PYTTIERNLVERMVTVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATIARPANAAVLAR 218

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + + +E+      L++P  TL     + L     +   +        A + +  +V +D 
Sbjct: 219 LRIDMEDRGGRLELMLPYATLEPVRELLLQMFMGEKFGRDSIWETHLANELWNTDVELDA 278

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            ++     L DV+ LK G  I       +   +      ++S ++GR   +  +RI++R+
Sbjct: 279 VLDEIVMPLHDVLNLKPGSRILLNAMPNSTIDMRCGNVSLFSGKMGRKNGSIAVRISNRL 338

Query: 305 NF 306
             
Sbjct: 339 RK 340


>gi|83594172|ref|YP_427924.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC
           11170]
 gi|83577086|gb|ABC23637.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC
           11170]
          Length = 384

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 107/297 (36%), Gaps = 4/297 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  + QS +F   
Sbjct: 89  DKSGIQAIISTALVSYERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDNIQSYRFGDY 148

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     + S      W +   +   ++++ ++++ LLG        ++  R  +T+E+
Sbjct: 149 LNSIPLPAMLSVFKAEEWDNYGLLTIDSSMIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 208

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R +  + A L+         +   +        +  T    +       + + +E+
Sbjct: 209 NLVERLVHVVLADLSAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMED 266

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 ++IP  TL     + L     +   +        A + +   V +D  ++    
Sbjct: 267 RGGRLDMLIPYATLEPVRELLLQMFMGEKFGRDSIWETHLAEEMWSTEVQMDAILDEVYM 326

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            L  ++++++G  I F     +   L      ++  ++GR G+N  IR+  + N  +
Sbjct: 327 PLNKILSMEVGSQILFNATPDSTVQLRCGDVPMFDGKMGRKGQNIAIRVDSKHNRAK 383


>gi|89895728|ref|YP_519215.1| hypothetical protein DSY2982 [Desulfitobacterium hafniense Y51]
 gi|89335176|dbj|BAE84771.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 338

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 103/285 (36%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K       ++   Y + L       +   ++   +S +   +   I S     + S  +
Sbjct: 55  SKDQIHSLQNIYENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYT 114

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L+       +  S  L   +++ LLG   +   +  NR L+ +E+ +      Q+  ++ 
Sbjct: 115 LNPLEGTLLMEMSPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIG 172

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S    + P  E        +       NE +  + + + +  +     + +P   L 
Sbjct: 173 EAWSEVIPNEP--EYIVLETNPQFTQIVAPNEMIILVTLEVQVGEMVGMVNMCLPYLVLE 230

Query: 208 KTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                  +      +++  S++ ++   RK     V++ T +   +  ++D++ L  G V
Sbjct: 231 PVLDKLSTLFLFSTQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDV 290

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           IP +   K    +       +    G  G++  ++IT+ +   + 
Sbjct: 291 IPLMQNVKEALPVYVGNFRKFKGIPGLHGEHLAVQITEIVEEGRD 335


>gi|144897829|emb|CAM74693.1| Flagellar motor switch protein fliM [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 382

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 103/281 (36%), Gaps = 4/281 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
                 +   +     + +    +     +V++S  +  S +F   ++S     + +   
Sbjct: 104 SYERLPMLEVVFDRLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFK 163

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
              W +   +   ++L+ ++++ LLG        ++  R  +T+E+ L +R +  + + L
Sbjct: 164 AEEWDNYGLLTVDSSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDL 223

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
           +         +   +        +  T    +       + + +E+      L++P  TL
Sbjct: 224 SAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMEDRGGRLELLLPYATL 281

Query: 207 LKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                + L     +   +        A + +   V ++  ++ +   L+DV+  K+G  I
Sbjct: 282 EPVRELLLQMFMGEKFGRDSIWETHLAEELWLTEVQMEAVLDEQVMGLRDVLNWKVGSKI 341

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
               +  +   L      ++   +GR G +  IR+ D+I  
Sbjct: 342 LLNAQPNSPIDLRCGDVSMFRGRMGRKGPHIAIRVDDKIKG 382


>gi|302338090|ref|YP_003803296.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM
           11293]
 gi|301635275|gb|ADK80702.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM
           11293]
          Length = 341

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 92/280 (32%), Gaps = 8/280 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  S +   + +        ++   V +   S     +   I S          +
Sbjct: 48  SKEQIRTVSIMHETFARLTTTALSAQLRSMVHVHVASVDQLTYEEFIRSIPNPTTLGIIN 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +  +     +  ++++ L+G   E      NR L+ +E+ + +  I +I   L 
Sbjct: 108 MDPLKGSAVLEIDPAITFSVIDRLMGGQGE--GSKVNRDLTDIEQTVMEGIIVRILGNLR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  P L         +        E V  + +   +  V       IP  T+ 
Sbjct: 166 EAWSQVIDLRPRLGQIET--NPQFAQIVPPTEMVVLVTLETKVGEVEGMMNFCIPYLTIE 223

Query: 208 KTTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                  +     +     + + ++    +   + + +   I     T++DV++L+ G V
Sbjct: 224 PIISKLSAQYMYSSVRSGATTENLNILKDRLSTVAIPVVAEIGEMNLTVRDVLSLRAGDV 283

Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           I     R      +    ++ + C  G VG    ++I  R
Sbjct: 284 IRLPDVRVGDPMTIKIGNRKKFECRPGLVGNKVAVQIVHR 323


>gi|307546956|ref|YP_003899435.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581]
 gi|307218980|emb|CBV44250.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581]
          Length = 347

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 96/307 (31%), Gaps = 10/307 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
                   P  P    R+       +        +   + +         +    DI+  
Sbjct: 29  GGSAPKVRPFDPASQHRII------RERLHTLDIINERFARHFRMGLFNLIRRSADITVD 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S +   +S    +       +  ++     +  I    NLV  +++NL G     + +  
Sbjct: 83  SVRYQSYSEFSRNVPVPTNINMIAMKPLKGSALIVFPPNLVFMVVDNLFGGDGRFLTKSE 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++ +R +       +    +      +      +     N     NE V  
Sbjct: 143 GREFTNTEQRIIQRMLRLAIEAYSDSWRSVYPLEISFLRSE-MQAKFANITNSPNEIVVN 201

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
            N N+ + N+ASSF + +P   +     + ++   +  ++Q        A +     V +
Sbjct: 202 TNFNLEVGNLASSFQICMPYSMIEPLRDLLINPLSDGHQDQDSTWTRRMAGEIRHSTVEL 261

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                   + + DV  L++G ++P             +G  +  CE G       +R+  
Sbjct: 262 VADFADLPSRIADVTALEVGDILPLELP--ETVTAKVDGVPVMECEYGSQHGQRALRVLR 319

Query: 303 RINFDQK 309
             +    
Sbjct: 320 LFDHAAD 326


>gi|56964023|ref|YP_175754.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16]
 gi|56910266|dbj|BAD64793.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16]
          Length = 329

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 96/307 (31%), Gaps = 13/307 (4%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             K           R        K   +  S +   Y + L      K+   V I   S 
Sbjct: 32  SEKKVRVYDFKRALRF------SKDQIRNLSRIHENYARLLTTNLSAKLRSLVQIQVASV 85

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +   +   + S       +       +    I  + N+   + + +LG    +  ++ N 
Sbjct: 86  EQVPYEEYVRSIPTMTFLNVIEPIPLNGRVLIEINPNIAYAMFDRVLGGHGMSFNKIDN- 144

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
            L+ +E K+       + A   +  +T  E  P  E+               NE V  I+
Sbjct: 145 -LTEIETKILSGLFESMLASFAEAWTTVIEMEPITENIEV--NPHFLQLVSPNETVVVIS 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242
           ++ +I N      + +P   L +           Q +    S +      ++  Q  + +
Sbjct: 202 LSTSIANTTGLMTICLPHVVLEEILPKLTSHHWFQEQRGALSTEDQALLNKQVRQTTLEV 261

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     T+++ + L  G V+           +   G++ +S + G       +++TD
Sbjct: 262 AAELGRSTITIEEFLRLGKGDVVALNQLIDEPLDVLVGGEKKFSGQPGVKRDRMALQVTD 321

Query: 303 RINFDQK 309
            +     
Sbjct: 322 VLGGTDD 328


>gi|290475711|ref|YP_003468600.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004]
 gi|289175033|emb|CBJ81836.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus bovienii SS-2004]
          Length = 335

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 85/310 (27%), Gaps = 10/310 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S      P  P    R+  +             +   + +         +    DI+  +
Sbjct: 30  SGESEIRPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L             +LV   ++NL G       ++  
Sbjct: 84  IKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFEPSLVYIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +            +  +          +     N     N+ V T 
Sbjct: 144 REFTYTEQRVINRMLKLALDAYRDAWDSIFKIEVEYVRSE-MQVKFTNITTSPNDIVVTT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243
              + I  +   F + IP   +        +        +     +   ++     + + 
Sbjct: 203 PFQVEIGALCGEFNICIPFAMIEPLRERLTNPPVENVRQEEGQWRESLVKQVQHSELELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   
Sbjct: 263 ANFVDIPLRLSKILQLRRGDVLPIERP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHL 320

Query: 304 INFDQKSLKN 313
           IN    +L  
Sbjct: 321 INPVLNALDE 330


>gi|303325483|ref|ZP_07355926.1| flagellar motor switch protein FliM [Desulfovibrio sp. 3_1_syn3]
 gi|302863399|gb|EFL86330.1| flagellar motor switch protein FliM [Desulfovibrio sp. 3_1_syn3]
          Length = 326

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 32/297 (10%), Positives = 84/297 (28%), Gaps = 10/297 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                        R+            +   +   + +         +   V+++  S  
Sbjct: 32  DSGIVAFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAVRKRVELNPISID 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF   + S       +   +     N  +   + LV  L+EN+ G +     ++  R 
Sbjct: 86  MTKFGEFMRSLPVPTSINIFKMDPLRGNAIMVVDSRLVFALVENVFGGAGTQP-KIEGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E+ +  + +      + +      +    L         +       ++ V  I  
Sbjct: 145 FTRIEQAVVDKIVKIALDNMEESWRPVHDVKLELVR--SEINPQFAAIVPPSDVVVVITF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + ++    S ++ +P  T+         S Q +        +     +  +  V +   
Sbjct: 203 EVELDTALGSMIICLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLLETPVELKVH 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                 T   ++ +++G V+      +     +  G   Y    G V      +I  
Sbjct: 263 YGNTTITGNQLLRMQVGDVLVLDTDVEDLLTCTVAGVGKYQGIAGTVKAMKAFQIIK 319


>gi|288958672|ref|YP_003449013.1| flagellar motor switch protein [Azospirillum sp. B510]
 gi|288910980|dbj|BAI72469.1| flagellar motor switch protein [Azospirillum sp. B510]
          Length = 357

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 99/302 (32%), Gaps = 4/302 (1%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                    +  L            +   +     + +    +     +V++S     S 
Sbjct: 54  GAGDGDNSGIMALVNSALVNYERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDQISSV 113

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSL 127
           +F   ++S     + S      W +   +   + L+ ++++ LLG        ++  R  
Sbjct: 114 RFGDYLNSIPLPAMLSVFKAEEWDNYGLMVVDSALIYSIVDVLLGGRRGTAAMRIEGRPY 173

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +T+E+ L +R +  + + L+         +   +        +  T          + + 
Sbjct: 174 TTIERNLVERMVHVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATIARPANAAVLVKLR 231

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + +E+      L+IP  TL     + L     +   +        A +    +V++   +
Sbjct: 232 IDMEDRGGRLELMIPYATLEPVRELLLQMFMGEKFGRDSIWETHLASELMVTDVDLSAVL 291

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +    TL DV+  ++G  I           L      ++   +GR G +  +R+   +  
Sbjct: 292 DEVTMTLHDVLNWRVGTRILLNATPDGAIELRCGDVSMFQGRMGRKGGHIAVRLEKELPK 351

Query: 307 DQ 308
            +
Sbjct: 352 QE 353


>gi|183220997|ref|YP_001838993.1| flagellar motor switch protein FliM [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167779419|gb|ABZ97717.1| Flagellar motor switch protein FliM [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 341

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 102/314 (32%), Gaps = 17/314 (5%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             K           +        K   +    +  ++ +        ++   V +   S 
Sbjct: 32  EQKKVKIYDFKRPDKF------SKDQIRTLQMMHEIFARLATTGLSAQLRALVVVHVASV 85

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
               +   I S       +  ++     +  +    ++  T+++ L G   E+     NR
Sbjct: 86  DQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGESSKV--NR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
            LS +E  + +  I +I   L +  ST  +  P L +       +       N+ V  I 
Sbjct: 144 ELSDIELSVMEGIIVRILGNLRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLIT 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242
           +   +  V     L IP  T+              +  + + ++       +  Q+ + +
Sbjct: 202 LETKVGEVERMTNLCIPYITIEPIINKLSAQYWYSSIRKGEVDENRAVIQERLDQVKIPL 261

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            + +     +L D++ L +G VI       KT  ++    +  +    GRVG    I+I 
Sbjct: 262 ISEVGSVDISLNDLMNLHVGDVIKLENTPIKTDLMVKVGDRSKFKATPGRVGNRLAIQIG 321

Query: 302 DRINFDQKSLKNFL 315
           D I   +      L
Sbjct: 322 DSI---EDIPDELL 332


>gi|219670152|ref|YP_002460587.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense
           DCB-2]
 gi|219540412|gb|ACL22151.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense
           DCB-2]
          Length = 331

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 103/285 (36%), Gaps = 7/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K       ++   Y + L       +   ++   +S +   +   I S     + S  +
Sbjct: 48  SKDQIHSLQNIYENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYT 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L+       +  S  L   +++ LLG   +   +  NR L+ +E+ +      Q+  ++ 
Sbjct: 108 LNPLEGTLLMEMSPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIG 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S    + P  E        +       NE +  + + + +  +     + +P   L 
Sbjct: 166 EAWSEVISNEP--EYIVLETNPQFTQIVAPNEMIILVTLEVQVGEMVGMVNMCLPYLVLE 223

Query: 208 KTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                  +      +++  S++ ++   RK     V++ T +   +  ++D++ L  G V
Sbjct: 224 PVLDKLSTLFLFSTQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           IP +   K    +       +    G  G++  ++IT+ +   + 
Sbjct: 284 IPLMQNVKEALPVYVGNFRKFKGIPGLHGEHLAVQITEIVEEGRD 328


>gi|217077700|ref|YP_002335418.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B]
 gi|217037555|gb|ACJ76077.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B]
          Length = 329

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 101/292 (34%), Gaps = 7/292 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K  E+    L   + + L   F  ++   V +         +   + S + 
Sbjct: 40  DFLRPRKFSKEQERTLQMLHENFARSLSTYFSGRLRSFVAVDLVGLDQMTYDEFVKSIRN 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
               +  S   +  +  +     +   +LE LLG     +    NR  +  E ++ ++ +
Sbjct: 100 PSYIAVFSAKEFVGSAILDIDLEIFFGVLEILLGGPGMNVE--INRPPTDTEIEVMRKEV 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             I   L Q  ST    +P +E        +      SNE V  I + + I N+     +
Sbjct: 158 VNILTNLVQAWSTVYSFTPVIEAIET--NPQFVQIVASNEMVLVITLLLKIGNIEGYINI 215

Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
             P   +             + K +  SE+ +        +  V +   +     TL D+
Sbjct: 216 CWPSSLVEPIGEKLTTQSWFKTKQKIVSEEDMKALRENLARTIVELSVAVGETNLTLWDI 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           + L++G VI     ++    +  NGK+ +    G     Y ++I + ++ ++
Sbjct: 276 LNLEVGDVIRLDTFKEDPLKIKLNGKDKFLGVPGVFKGKYAVKIVEVLDEEE 327


>gi|240145492|ref|ZP_04744093.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82]
 gi|257202307|gb|EEV00592.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82]
 gi|291536015|emb|CBL09127.1| flagellar motor switch protein FliM [Roseburia intestinalis M50/1]
          Length = 326

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 97/292 (33%), Gaps = 7/292 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +    +   Y + L       +  +V +   + ++  +S   ++   
Sbjct: 39  DFARPAKFSKEHLRTLEIIFEHYGRLLSTNLPVYLRKNVQVEVMNSEAVTYSEFSNALSN 98

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             +    + S  + +  I  + NL   +++ +LG     + +   R  S +E  + +R  
Sbjct: 99  PVLLGIVNASPLNGSIVIEMAQNLGYVVVDRMLGGKGVPLDKP--RDFSEIELLIIERIF 156

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
                +L +      E  P LE        +        E +  + +N+ I +V     +
Sbjct: 157 NVAVDLLVEPWENVCELEPRLERIET--NSQFAQIISPTEMIALVTLNVKIGDVEGLLNV 214

Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +P  TL              +  E   +   +       +  + I   +     ++ D 
Sbjct: 215 CLPYLTLESIMDKLNTKYWYSSLQEKDEQQYTETIEALISKAPMPIKAVLGNSSISVNDF 274

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           + L++G +I    +      +     + ++   G  G +Y +RIT  I  +Q
Sbjct: 275 LGLQVGDIIRLDTKVDQELSVFVGSIKKFTALPGETGDDYAVRITSVIREEQ 326


>gi|183598647|ref|ZP_02960140.1| hypothetical protein PROSTU_02052 [Providencia stuartii ATCC 25827]
 gi|188020831|gb|EDU58871.1| hypothetical protein PROSTU_02052 [Providencia stuartii ATCC 25827]
          Length = 335

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 87/307 (28%), Gaps = 10/307 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           +   P  P    R+  +             +   + +         +    DI+    + 
Sbjct: 33  EQVRPYDPNTQRRVIRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIKI 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +     +       +   +              LV   ++NL G       +   +  
Sbjct: 87  EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  R +    +          +          +     N     N+ V T    
Sbjct: 147 TNTEQRIIHRMLKLALSAYRDAWRPIADIDVEYVRSE-MQVKFTNITTSPNDIVVTTPFL 205

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTRI 246
           + I N    F + IP   +       ++   +    ++E  +     +  +  + +    
Sbjct: 206 VEIGNTIGEFSICIPIAMIEPLRERLINPPVEQGHQENEAWVSNLVTQVKRSELELVANF 265

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +  ++ L+ G VIP         I+S +G  + + + G     Y +R+   IN 
Sbjct: 266 VDIPLRISRLLQLQKGDVIPIEKP--DRLIVSVDGVPVLTSQYGTQNGQYALRVEHLINP 323

Query: 307 DQKSLKN 313
              +L  
Sbjct: 324 VLNTLDE 330


>gi|310659031|ref|YP_003936752.1| flim [Clostridium sticklandii DSM 519]
 gi|308825809|emb|CBH21847.1| FliM [Clostridium sticklandii]
          Length = 332

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 95/297 (31%), Gaps = 7/297 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   K    +   + + L       +     I   S +   +    +S   
Sbjct: 40  DFKSPKKLAKDQLKTLHMIHENFSRILNTYLSGYLRSITQIDVISVEELSYYEFNNSISN 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             + S               SN L  T+++ +LG + +   +  +R  + +E  +  + +
Sbjct: 100 PALISVIDFMPLPGQIIFEMSNRLAFTMIDRILGGNGKY--ESESRPFTEIETTILNKLM 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
           A +S +L +      E  P L+        +      SNE V  I +   + ++     +
Sbjct: 158 ANVSRLLIEPWENVIELDPELDKIET--NSQFAQIVSSNETVALITLRANVGDIEGLMNI 215

Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +P   L                 +  +ED       +  + N++I+  +     T+++ 
Sbjct: 216 CMPHIVLEPILPNLSTKFWFSTVKKELNEDDKGYLETRVKRANIDINAVVGDTYITVEEF 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           + L+ G VI    +      L   GK  Y    G +  N   +IT  +    +    
Sbjct: 276 IYLQEGDVIKLSRKIDEDLELHVEGKTKYLGRPGTLKNNMAFKITKVVEKGDEDYDE 332


>gi|288573016|ref|ZP_06391373.1| flagellar motor switch protein FliM [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568757|gb|EFC90314.1| flagellar motor switch protein FliM [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 334

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 95/306 (31%), Gaps = 13/306 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +   S  KN          +        K   +    +   + + L       +   V  
Sbjct: 28  ISQASAEKNVKGYDFRRPDKF------SKDQLRAIQMIHESFSRQLTTSLSTMVRSIVTC 81

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
              S     +   + S  +  V     +     N  +  + NLV  +++ LLG   E   
Sbjct: 82  EVASVDQVAYEEFVRSMVQPTVMGVLEMYPLEGNAVVEMNPNLVFAIIDRLLGGKGEVFG 141

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +   R L+ +E  + +R   ++  +L    ST  +     +                 + 
Sbjct: 142 KP--RDLTDIESTVIERVFMRMLELLEDSWSTVIDVRFRFD--SMESNPFFVQICPGTDM 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           V  + + ++I +V     L IP   +              +  +N+ +D           
Sbjct: 198 VLLVTLRVSIGDVEGMVSLCIPYFVMEPVMDKLSSQIWFASTGKNKDQDHRGFLTASLGT 257

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + V +   +     +L DV+ L++G VI           +    +  ++   G V   Y+
Sbjct: 258 VKVPVHLELGDTVLSLFDVMRLRVGDVIRLDSMLDDPVRVRVGSRIKFTGRPGTVDGRYS 317

Query: 298 IRITDR 303
           + + + 
Sbjct: 318 VEVLEV 323


>gi|24214781|ref|NP_712262.1| flagellar motor switch protein FliM [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45657699|ref|YP_001785.1| flagellar motor switch protein FliM [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24195784|gb|AAN49280.1| flagellar motor switch protein FliM [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600939|gb|AAS70422.1| FliM [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 341

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 103/315 (32%), Gaps = 17/315 (5%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S  K           +        K   +    +   + +        ++   V +   S
Sbjct: 31  SEQKKVKIYDFKRPDKF------SKDQIRTLQMMHETFARLATTGLSAQLRALVSVHVAS 84

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
                +   I S       +  ++     +  +    ++  T+++ L G   E      +
Sbjct: 85  VDQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGEQAK--IS 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R LS +E  + +  I +I   + +  ST  +  P L +       +       N+ V  I
Sbjct: 143 RELSEIEMSVMEGIIVRILGNMRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLI 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVN 241
            +   I  V     L IP  T+              +  + + ++       +  Q+ + 
Sbjct: 201 TLETKIGEVEGMTNLCIPYITIEPIINKLSAQYWYSSIRKGELDENRAVIQERLDQVAIP 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           +   +     ++ D + L IG V+   +   ++  I+    ++ + C  GRVG    I+I
Sbjct: 261 LIAEVGSVDVSINDFMNLSIGDVVKLENTSTRSEMIVKVGERKKFKCLPGRVGSRLAIQI 320

Query: 301 TDRINFDQKSLKNFL 315
            +R+   +      L
Sbjct: 321 GERV---EDIPDELL 332


>gi|209964207|ref|YP_002297122.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
 gi|7025351|gb|AAF35843.1|AF220001_1 polar motor switch protein FpiM [Rhodospirillum centenum]
 gi|209957673|gb|ACI98309.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
          Length = 362

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 97/281 (34%), Gaps = 4/281 (1%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
               +   +     + +    +     +V++S     S +F   ++S     + +     
Sbjct: 81  ERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLAVFKAE 140

Query: 90  SWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            W +   +   + L+ ++++ LLG        ++  R  +T+E+ L +R +  + + L+ 
Sbjct: 141 EWDNYGLMVIDSALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSA 200

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                   +   +        +  T          + + + +E+      L+IP  TL  
Sbjct: 201 AFDPLSPVTFRFDRLET--NPRFATIARQANAAVLVKLRIDMEDRGGRLELLIPYATLEP 258

Query: 209 TTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              + L     +   +        A + +  +V++   ++    +L DV+  +IG  +  
Sbjct: 259 VRELLLQMFMGEKFGRDSIWETHLASELWMTDVHLSAVLDEITLSLYDVLNWRIGSRVLL 318

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                    L      ++   +GR G N  +RI       +
Sbjct: 319 NVAPDDTIELRCGDVPMFLGRMGRKGGNIAVRIDREAPKPE 359


>gi|257457606|ref|ZP_05622773.1| flagellar motor switch protein FliM [Treponema vincentii ATCC
           35580]
 gi|257444992|gb|EEV20068.1| flagellar motor switch protein FliM [Treponema vincentii ATCC
           35580]
          Length = 344

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 108/321 (33%), Gaps = 12/321 (3%)

Query: 2   RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
            G +  +   P++    I +          K   +  S +   + +        ++    
Sbjct: 19  SGDTEAEEFRPVNDTRKIKIYDFKRPDKFSKEQMRTVSIMHETFARLTTTALSAQLRSMA 78

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
            +   S     +   I S       +  ++     N  +    ++  ++++ L G + ++
Sbjct: 79  HVHVASVDQLTYEEFIRSIPTPTTLAVINMDPLKGNAVLEIDPSVTFSIIDRLFGGTGQS 138

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
              +  R L+ +E  + +  I +I A + +  +   +  P L         +       +
Sbjct: 139 --TMVQRELTDIEASVMEGVIVRILANMREAWTQVIDLRPRLGQIET--NPQFAQIVPPS 194

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235
           E V  + +   +          IP  T+              +   + +   +     K 
Sbjct: 195 EMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGVLKEKL 254

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294
             +++++   +   K  ++DV+ L+ G V+     R      LS   ++ + C+ G VG 
Sbjct: 255 STVDMDVVAEVGSLKLPVRDVLNLRAGDVVRLTDTRVGHPFTLSVGSRKKFWCQPGVVGN 314

Query: 295 NYTIRITDRINF-DQKSLKNF 314
              ++I ++I   +Q   +  
Sbjct: 315 KVAVQILEKIEDINQDEFEEL 335


>gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 329

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 96/310 (30%), Gaps = 11/310 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +          P       +        K   +    +     +         +   V +
Sbjct: 27  IEENQQEAKVKPYDFRRPNKF------SKEQLRTLQMIFENMSRSFTTFLSGYLRTLVQV 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S  S +   +    +S       +            + C+NN   T+++ +LG    +  
Sbjct: 81  SIVSVEQITYYEFSNSLTNPVFIAVIDAKPLEGPIILECNNNTTFTIIDKILGGIGAS-- 138

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +   R  + +E  L  R   Q+  ++    S   E +P +         +       NE 
Sbjct: 139 ETVQRDYTEIEMGLLTRITTQLLPLIKDAWSNVIELNPEITRIET--NSQFTQVISPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL-IDPFARKTYQLN 239
           V    M++ I +        +P  T++    +  +    S  + +   I     K     
Sbjct: 197 VALCTMSLKINDNEGLINFCLPHITIVPILPLLTTKTWFSNAEKQTYDIGIIKDKISNTY 256

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   I   K T++D+++   G VI    R K    +  N +  +    G   K Y ++
Sbjct: 257 VPLKVVIGTSKITVRDLLSFDKGDVIEINKRYKDPIEVKINDETKFLGVPGIRNKKYCVQ 316

Query: 300 ITDRINFDQK 309
           IT+  +    
Sbjct: 317 ITEICSEGDD 326


>gi|150388448|ref|YP_001318497.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
 gi|149948310|gb|ABR46838.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
          Length = 331

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 94/294 (31%), Gaps = 7/294 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +    +   +   L       +   V     + +   +    +S   
Sbjct: 40  DFKSPKKLAKDQLRTLQIIHDNFSGMLNTFLAGYLRTYVQAEVLTVEELSYYEFSNSVVN 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             V S  + +       +  S ++  TL+E +LG   +   ++  R  + +E  L K  +
Sbjct: 100 PAVLSIINFTPLEGQIIVDISPSISFTLIERILGGMGKETEEI--RPFTEIETTLIKNLM 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
            Q+  ++        E  P L+        +       N+ V  I +N+ I +V     +
Sbjct: 158 RQVINLMIDPWENVIELQPKLDKIET--NSQFAQIVSPNDTVALITLNLKIGDVEGMMNI 215

Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            IP   +              N S+  +E       ++  +  V+I  ++     T+KD 
Sbjct: 216 CIPHIVIEPILDKLSTKLWFSNSSKPVTERDKKALQKRVEKSAVDITAQLGSTCVTVKDF 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + L++G VI   +       +    K  Y    G       +++T       + 
Sbjct: 276 LELQMGDVIMLDNPVDKELQILVGDKIRYRGLPGTSKNKLAVKVTGIDQKGDEI 329


>gi|197285496|ref|YP_002151368.1| flagellar motor switch protein FliM [Proteus mirabilis HI4320]
 gi|227355987|ref|ZP_03840379.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
 gi|194682983|emb|CAR43414.1| flagellar motor switch protein [Proteus mirabilis HI4320]
 gi|227163975|gb|EEI48877.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
          Length = 343

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 88/308 (28%), Gaps = 10/308 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P  P    R+  +             +   + +         +    DI+    +
Sbjct: 40  EPDIQPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIK 93

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L             NLV   ++NL G        +  R 
Sbjct: 94  IHPYHDFARNLPVPTNLNLVHLKPLRGTALFTFEPNLVYIAVDNLFGGDGRFPIPVEGRE 153

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  + +            +  +          +     N     N+ V T   
Sbjct: 154 FTNTEQRIINKMLKLALDAYRDAWDSIFKIQVEYVRSE-MQVKFTNITSSPNDIVVTTPF 212

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245
            + I ++   F + IP   +       ++   ++   +    +D    +     + +   
Sbjct: 213 QVEIGSMVGEFSICIPFAMIEPLRERLINPPIENLRQEDSVWLDSLVNQVKHSELELVAN 272

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  L  V+TLK G V+P         I   +G  + + + G V   Y +R+   IN
Sbjct: 273 FTDIPLRLSKVLTLKKGDVLPIDKP--ERLIAHVDGVPVLTSQYGTVHGQYALRVEHLIN 330

Query: 306 FDQKSLKN 313
               +L  
Sbjct: 331 PVLNALDE 338


>gi|320538201|ref|ZP_08038096.1| flagellar motor switch protein FliM [Treponema phagedenis F0421]
 gi|320145018|gb|EFW36739.1| flagellar motor switch protein FliM [Treponema phagedenis F0421]
          Length = 344

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 99/282 (35%), Gaps = 8/282 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  S +   + +        ++   V +   S     +   I S       +  +
Sbjct: 48  SKEQMRTLSLMHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPTTIAVIN 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +    ++  ++++ L G + +       R L+ +E  + +  I +I A + 
Sbjct: 108 MDPLKGNAILEIDPSVTFSIIDRLFGGTGQGTKV--QRDLTDIENSVMEGVIVRILANVR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +   +  P L         +       +E V  + +   + +        IP  T+ 
Sbjct: 166 EAWTQVIDLRPRLGQIET--NPQFTQIVPPSEMVVLVTLETKVGDEEGMMNFCIPYITIE 223

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                        +   + +   +     K   +++++   +     +++DV++L+IG V
Sbjct: 224 PIISKLSSQFWFSSVRRSSTTQYMGVLKDKLSTVDMDVVAEVGFLNLSVRDVLSLRIGDV 283

Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I            LS   ++ + C+ G VGK   ++I ++I 
Sbjct: 284 IRLKDTHVGDPFTLSVGNRKKFLCQPGVVGKKVAVQILNKIE 325


>gi|126665008|ref|ZP_01735991.1| flagellar motor switch protein M [Marinobacter sp. ELB17]
 gi|126630378|gb|EBA00993.1| flagellar motor switch protein M [Marinobacter sp. ELB17]
          Length = 331

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 93/296 (31%), Gaps = 12/296 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                      R+                +   + ++        +    D+S +  Q  
Sbjct: 32  GVKSYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRTADVSTSGVQIM 85

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +   +              LV  L++N  G       ++  R  +
Sbjct: 86  KFGEYVHTLYVPTSLNLCKIRPLRGTSLFVLDAKLVFKLVDNFFGGQGR-HAKIEGREFT 144

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++ +  + Q+   + +   T  + +   E                +E V     ++
Sbjct: 145 PTENRIVQMMLNQVFHDMQEAWQTVLKVN--FEYLSSEVNPSMANIVSPSEVVVVSTFHI 202

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++         +P   +     +  +  Q+  ++  E  +         ++V +++ I 
Sbjct: 203 ELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDTDERWVSALQEDIKTVSVAVNSTIC 262

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            +  +L++V   K G +IP          ++ANG  IY+  LG       +RI  R
Sbjct: 263 RRHISLREVAKFKAGDIIPIEMA--EHLTVTANGIPIYTATLGTRDDKLALRIHGR 316


>gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis
           HTE831]
 gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
          Length = 330

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 100/287 (34%), Gaps = 9/287 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  S +   Y + L   F  ++   V+IS TS     +   I S  +  + +   
Sbjct: 48  SKDQIRSISRIHENYARMLTTFFATQLRSYVNISVTSVDQVPYEEFIRSIPKKTILNLYG 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + N+   LL+ LLG    TI +  N  L+ +EK L  +   +    L 
Sbjct: 108 MEPLDGNLIMEINPNIAYALLDRLLGGKGSTITKDGN--LTEIEKTLFMQMFEKAEDALR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
              S+  E  P LE     +  +       NE V  +++   I        + IP   L 
Sbjct: 166 DAWSSVVEIEPVLE--EFEENPQFMQKIAPNETVVVVSLTTVIGETTGMINICIPHVILE 223

Query: 208 KTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                         + N+ E       +   +  V +   +     ++ D +  + G +I
Sbjct: 224 PIIPKLSVHYWMQSNSNKDEQAYGKMQQNLKKTEVELKAILGATTISIHDFLNFQQGDII 283

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI---NFDQK 309
                     +LS   +  +  + G+     +++I + I   N D +
Sbjct: 284 SLDQPIDAPLLLSIYDQPKFFAQPGKFKNKMSVQILEEIKGVNEDDE 330


>gi|27380936|ref|NP_772465.1| flagellar motor switch protein FliM [Bradyrhizobium japonicum USDA
           110]
 gi|27354102|dbj|BAC51090.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
          Length = 400

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 102/295 (34%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + L    +     +V++S     S +F   
Sbjct: 87  DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLLTTSLRNFTSDNVEVSLDRITSVRFGDY 146

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V S      W +       +NL+ ++++ LLG     +  ++  R  +T+E 
Sbjct: 147 MNSIPLPAVLSVFKAEEWDNFGMATVDSNLIYSMIDVLLGGRRGTSQLRIEGRPYTTIET 206

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           +L KR +  + A   Q        +  ++        +             + + + +E+
Sbjct: 207 ELVKRLVEVVLADAEQAFRPLSPVTFTIDRLET--NPRFAAISRPANAAILVRLRIDMED 264

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + L     +   +       FA +  Q  +++D  +     
Sbjct: 265 RGGNIELLLPYATIEPIRGVLLQMFMGEKFGRDPVWEGHFATEIGQAEISVDAVLYEADI 324

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK ++ LK+G  +P   R      +      I    +GRVG    IR+T  +  
Sbjct: 325 PLKQLMRLKVGDTLPLDMRADANVTVRCGDVTITEGRMGRVGDRVAIRVTKPLRK 379


>gi|283850275|ref|ZP_06367564.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B]
 gi|283574301|gb|EFC22272.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B]
          Length = 326

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 95/306 (31%), Gaps = 7/306 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTI---EKISSSLGYLYKKFLPKIFKEKMDLD 57
           + G  I   T  L       +       + I     +   +   + +         M   
Sbjct: 17  LSGGEIEAETDILEDDSGVVVFDLSNQDRIIRGRMPVLEIINDRFARLASNAMANAMRKR 76

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
            D++  S    KF   + S       +   L     N  +   + LV  ++E+  G +  
Sbjct: 77  ADVNPISIDMSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVDSRLVFAMVESFFGGAGS 136

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
              ++  R  + +E+ +  R +      + +      E   ++E        +       
Sbjct: 137 QP-KIEGRDFTPIEQAIINRVVRIALENMEESWQPVHEV--HIELVRSEVNPQFAAIVPP 193

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTY 236
           ++ V  +   + +EN   S ++ +P  T+         S Q +        I  F  +  
Sbjct: 194 SDVVVVVTFEVELENAIGSLIVCLPYATIEPIRSKLYASFQTERLEVDHAWIARFKERLM 253

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +  V +  R    + T + +++LK G +I   +           G   +    G V  N 
Sbjct: 254 ETPVELLVRFGRSQITGRQLLSLKPGDIIMLDNDVDALLDAEIQGVRKFRGIPGLVKSNK 313

Query: 297 TIRITD 302
             +I  
Sbjct: 314 AFQIVK 319


>gi|218778863|ref|YP_002430181.1| flagellar motor switch protein FliM [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760247|gb|ACL02713.1| Flagellar motor switch protein FliM [Desulfatibacillum alkenivorans
           AK-01]
          Length = 325

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 78/296 (26%), Gaps = 9/296 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +     +         M    DIS       KFS 
Sbjct: 38  YDFANQDRVIRG------RMPTLEVVNKRLARMFSSSLSATMRGAADISVRDTNMIKFSE 91

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
              S           +     +  +     LV  L+E   G +     ++  R  + +E 
Sbjct: 92  FQSSIPVPANIHMFKMEPLRGHALLVVDTPLVFQLIEYYFGGTPGGALKVEGRDFTRIEN 151

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++ ++ +       +   +      P           +     L  + +  +   + +E 
Sbjct: 152 QIIRKVVGIFLKDFDDAWAPIFPIKPVYVRSEM--NPQFAVIGLPIDLMIIVRFQVELET 209

Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L IP   L           Q+ +             +  ++ V I   +     
Sbjct: 210 TEGGMTLAIPYSMLEPIRDKLYSGFQSDNLEADASWRKRVESQVQEVLVEICVELGTAVI 269

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           T + +++L+ G VI               G    + + G V  +  I +  RI  D
Sbjct: 270 TAERLMSLRKGDVISLDQFADEPLTAKIQGVPKIAGKAGVVKGSKAIAVEGRITMD 325


>gi|42528263|ref|NP_973361.1| flagellar motor switch protein FliM [Treponema denticola ATCC
           35405]
 gi|4426948|gb|AAD20622.1| flagellar switch protein FliM [Treponema denticola]
 gi|41819533|gb|AAS13280.1| flagellar motor switch protein FliM [Treponema denticola ATCC
           35405]
 gi|325474547|gb|EGC77733.1| flagellar switch protein FliM [Treponema denticola F0402]
          Length = 344

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 95/282 (33%), Gaps = 8/282 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   + +        ++     +   + +   +   I S       +  +
Sbjct: 48  SKEQMRTVQMMHETFARLTTTSLSAQLRSMAHVHVATVEQLTYEEFIRSIPTPTTLAIIN 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +    ++  +    ++  ++++ L G   +       R L+ +E  + +  I +I A + 
Sbjct: 108 MDPLRASALLEIDPSVTFSIIDRLFGGKGQGSKV--QRELTEIESSVMEGVIVRILANMR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +T  +  P L +       +       +E V  + +   +        + +P  TL 
Sbjct: 166 EAWTTVVDLRPRLGNIDT--NPQFVQIVTPSEMVLLVTLETKVGEEEGMMNICLPYITLE 223

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                        +     +         K   + V++   +     +++DV+ L+ G V
Sbjct: 224 PIISKLSTQFWFSSVRRASTGQYAAAIKDKLSTVEVDMVAEVGSLDVSIRDVLNLRAGDV 283

Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     R      L+   +  +SC+ G  GK   ++I ++I 
Sbjct: 284 VRLPNVRVGDPFKLTVGSRPKFSCQPGVKGKKLAVQILEKIE 325


>gi|325109075|ref|YP_004270143.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM
           5305]
 gi|324969343|gb|ADY60121.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM
           5305]
          Length = 368

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 5/293 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +   +L   + +         +   +++   S     +   + S +    F+   
Sbjct: 54  SKEQMRAFQALHEGFSREFGASLSGMLRSIIEVKLISVDQLTYGEFVFSLENPTCFNLLF 113

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
               + +  +  + +++  +++ LLG    +     +R L+ +E +L  R        L 
Sbjct: 114 SDKLNGHLILDLNPSIIYPIVDRLLGGGKSSTQSYPSRPLTEIELRLVSRITKSAITALE 173

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                  E    +         +       NE +  I+  +++  +     L IP  T+ 
Sbjct: 174 NSWINISELQLRVTQIE--SNPQLVQIVPPNEVIVLISFEISMGEMRGIMNLCIPFNTIE 231

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             T        S    +  S               VN+   +     T  +++ L +G V
Sbjct: 232 PLTGKLSSDTWSAYTKQQISPQQKAQLEVGIGAAKVNLVAALAETHLTASELMNLDVGDV 291

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           I      K    +   GK  +S ++G++  +  I+I D++   +  +   L K
Sbjct: 292 ILTERDVKKGLTIFVEGKPTFSADVGQIKGHKAIQIRDKLPKTRDIVDQHLQK 344


>gi|306820127|ref|ZP_07453775.1| flagellar motor switch protein FliM [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551905|gb|EFM39848.1| flagellar motor switch protein FliM [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 332

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 91/293 (31%), Gaps = 7/293 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   K  S +   Y + L       + +  +I  +S +   +    +S   
Sbjct: 40  DFKSPKKLAKDQLKTLSIIHDNYARVLSTYLSGYLRVITEIEVSSVEELSYYEFNNSISN 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             + +  +         +  S+ L  T+++ +LG       +  NR  S +E  +  + +
Sbjct: 100 PAMIAVVNFEPLPGQIILETSSKLAYTMIDRILGGDGLYDEE--NRDFSEIELIILSKLV 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             I    ++      E SP LE        +       NE V  I +++ I  V     +
Sbjct: 158 RNIVGYFSEAWENVIELSPYLEKIE--PNSQFAQIVSPNETVALITLSVKIGEVEGLMNI 215

Query: 200 IIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +P   L        +        +   E           +  +     I     T++D 
Sbjct: 216 CLPNIVLEPIIQNLSTNFLFSGIKKEFDEKGKKNLESNVKKAKLEAVAIIGDTFITVEDF 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           + +++G VI    +      L   GK  Y    G   KN   +I   I    +
Sbjct: 276 IFMQVGDVIKLNKKVDEELELKVAGKTKYLGYPGTYKKNMAFKINKVIEKGDE 328


>gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM
           2228]
          Length = 335

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 100/315 (31%), Gaps = 17/315 (5%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
           + QS  K           +L       K   +    +     +        K+   V+  
Sbjct: 28  KEQSEEKEVKDYDFRRPDKL------SKEQMRTLQMIHENLSRLFTTTLSTKLRSMVNFE 81

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             S +   +S  IHS  E  +   + L      F    +  +   +++ L G     I  
Sbjct: 82  VASIEQLSYSEFIHSLPEPTIIGISKLEPLEGQFIFEINPEVGFAVIDRLFGGLGNPIDD 141

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  RS + +E+ + KR +  +    ++      +  P L         +       ++  
Sbjct: 142 I--RSFTDIEQVVIKRVMNWLLGDFSEAWENISKLKPKL--LELESNPQFTQIVPDSDMT 197

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQL 238
             I ++  I        + +P   L              +  E Q+ + I    ++  + 
Sbjct: 198 IIITLSARIGGSEGLMNICLPYIMLEPIVSNLNAQYWFSSTREKQTPEHIAKLRKRLNEA 257

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V +D  +   + T++D + L+ G V+    + +  A L       Y   +G    +  I
Sbjct: 258 LVEVDAVLGSTEITVEDFLYLQPGDVVRLDKKVEENAELKIGRSRKYEAVVGNKNNHKAI 317

Query: 299 RI----TDRINFDQK 309
           +I     + +   + 
Sbjct: 318 QIIGVAENLLEESED 332


>gi|283781536|ref|YP_003372291.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068]
 gi|283439989|gb|ADB18431.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068]
          Length = 362

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 99/302 (32%), Gaps = 12/302 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             +  +P       R+       K   +   SL   + +         +   V++  TS 
Sbjct: 45  TREKVTPYDFKRPERVG------KEQMRALQSLHEGFGRNFGAALSALLRSIVEVKLTSV 98

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
               +S  + S +    F+         N  +  + +++  +++ LLG   +    +  R
Sbjct: 99  DQLTYSEFVFSLENPTCFNLLRAEPLEGNLILDINPSILYPIIDRLLGG-GKEAGPVARR 157

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
            L+ +E +L  R        L            +++        +       NE V  I+
Sbjct: 158 PLTEIELRLVSRITHLFLQELKHAWEGVLPLKLSVDRVE--SNPQLVQIVPPNEVVVLIS 215

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242
             +T+ +V     L IP  ++ +                  +   I   +++  Q  V +
Sbjct: 216 FELTLNDVRGMINLCIPFNSIERIGSKLTSNNWVAYGKGGATPQSIAQISKRLDQSKVEL 275

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     T  D++ L++G +I      +T   ++  G   +    G +  +  +RI  
Sbjct: 276 VVTLAETTITTGDMIGLRVGDIITTDKDIRTPLEIAVQGMAKFQASCGALKGHKAVRIEQ 335

Query: 303 RI 304
            I
Sbjct: 336 SI 337


>gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
 gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
          Length = 331

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 96/294 (32%), Gaps = 7/294 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +    +   + + L       +   V     + +   +    +S   
Sbjct: 40  DFKSPKKLAKDQLRTLQIIHDNFSRMLNTFLAGYLRTYVQADVLTVEELSYYEFSNSVVN 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             V S  + +       +  S ++  TL+E +LG   +   ++  R  + +E  L K+ +
Sbjct: 100 PAVLSIINFTPLEGQIIVDISPSISFTLIERILGGVGKGTEEV--RPFTEIETTLIKKLM 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
            Q+  ++        E  P L+        +       N+ V  + +N+ I +V     +
Sbjct: 158 RQVINLMVDPWENVIELQPKLDKIET--NSQFAQIVSPNDTVALVTLNLKIGDVEGMMNI 215

Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            IP   +              N S+  +E       ++  +  VNI  ++     T+KD 
Sbjct: 216 CIPHIVIEPILDKLSTKLWFSNISKPVTESDKKALQKRVEKSTVNITAQLGGTCVTVKDF 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + L+IG VI   +       +    K  Y    G       +++T       + 
Sbjct: 276 LELQIGDVIMLDNPVNKELQILVGDKIRYRGLPGTSKNKLAVKVTGIDEKGDEI 329


>gi|261855321|ref|YP_003262604.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus
           c2]
 gi|261835790|gb|ACX95557.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus
           c2]
          Length = 347

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 99/303 (32%), Gaps = 6/303 (1%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +  +            LT +    +        L   + +         +   VDIS   
Sbjct: 25  ATEEGVGDPSEARSYDLTTQERIVRGRLPTLEMLNERFARNFRIRLVSMLRRTVDISIEG 84

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  K+S   H+       +   +            + LV  L++N  G       ++  
Sbjct: 85  VRMMKYSEYSHALYVPTSLTLVHVRPLKGTGLFMMESQLVFKLVDNFFGGFG-MHAKIEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E ++  R + Q    + +  +     +  ++        +        E V   
Sbjct: 144 RDFTPTELRVITRVLEQAIDEVQRSWTPVYPVN--IQTVSHEMNPQLANIVSGTEVVVVN 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNID 243
           +  + +E     F +++P   +     +     Q       E       R+  + ++ + 
Sbjct: 202 SFRIEVEGGGGKFDIVLPYSMIEPIRDLLDGGMQGDRLEVDERWTQALKRELGRADIELV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            ++   + +L D+  +++G V+PF        +L+A G  +Y  +LG    N ++RI   
Sbjct: 262 AQLGEMRMSLADIAHMEVGDVLPFEMP--EQVVLTAQGLPLYQGKLGVHRGNKSVRIQSP 319

Query: 304 INF 306
           +  
Sbjct: 320 VKE 322


>gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
 gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
          Length = 342

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 93/275 (33%), Gaps = 6/275 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D+S    Q  KF   +HS       +   +  
Sbjct: 69  RMPTLEMINERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 128

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q  A L +  
Sbjct: 129 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAW 187

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
               + +   E                +E V     ++ +++      + +P   +    
Sbjct: 188 HAVLDVN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIR 245

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+   +Q E  +         +NV +   +  ++  L+D++ ++ G VIP   
Sbjct: 246 EMLDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEM 305

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            E    I+ ANG   +  +LG    N  +++ + +
Sbjct: 306 PED--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 338


>gi|119476310|ref|ZP_01616661.1| flagellar motor switch protein M [marine gamma proteobacterium
           HTCC2143]
 gi|119450174|gb|EAW31409.1| flagellar motor switch protein M [marine gamma proteobacterium
           HTCC2143]
          Length = 320

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 6/278 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +H+       +   L  
Sbjct: 48  RMPTLEMVNERFSRYTRISLFNLLRRSADVAVGGIQVQKFGEYVHTLFVPTSLNMIKLRP 107

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 I     LV  L++N  G       ++  R  +  E ++ +  + +  A L +  
Sbjct: 108 LRGTGLIVLDAKLVFKLVDNYFGGDGR-HAKIEGREFTPTELRVVEMVLQEAFADLKEAW 166

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                      +               +E V     ++ ++       + +P   +    
Sbjct: 167 RAVLPVEFEFVNAEV--NPSMANIVSPSEVVVVSTFHIELDGGGGDMHITLPYAMIEPIR 224

Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
               S  Q   ++  +  I           VN+  ++  K+  L+D++ LK G VIP   
Sbjct: 225 ETLDSGLQTDVDDIDDRWIKSLREDILNATVNMGCKVAEKEVPLRDIIDLKEGDVIPMEM 284

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                 ++SANG  +   +LG+   N  +++ ++IN +
Sbjct: 285 PGD--LVISANGIPMMLAKLGQSKGNLALQVVEKINNE 320


>gi|298530627|ref|ZP_07018029.1| flagellar motor switch protein FliM [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510001|gb|EFI33905.1| flagellar motor switch protein FliM [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 325

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 91/298 (30%), Gaps = 10/298 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
                         R+            +   +   + +         M   VD +  S 
Sbjct: 31  EDSGVVTFDLSNQDRIIRG------RMPVLEIINDRFARLATNTMANAMRKRVDFNPISI 84

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
              KF   + S       +   +     N  +     LV  L+EN  G +     ++  R
Sbjct: 85  DMSKFGDFMRSLPVPTSINIFKIDPLRGNALMIIDTRLVFALVENFFGGTGSQP-KIEGR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             + +E+ +  +    + + L        E +  +E        +  T    ++ V  + 
Sbjct: 144 DFTPIEQSIVVKVSKMLLSNLEDAWRPVHEVN--IELTRSEVNPQFATIVPPSDVVVVVT 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
             + +EN   S V+ +P  T+         S Q++        +  F  +  ++ V+ + 
Sbjct: 202 FEVELENAIGSMVVCLPYATIEPIRSKLYASYQSERLEVDHAWLSRFKERLLEIPVDFNV 261

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            +   + T + ++ ++ G ++     ++        G   +    G    N   ++  
Sbjct: 262 TMGKTQITGRQLLNMEAGDILMLDTDQEDLLKAYVQGVLKFHGVPGFTKGNKAFQVVQ 319


>gi|154250207|ref|YP_001411032.1| flagellar motor switch protein FliM [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154143|gb|ABS61375.1| flagellar motor switch protein FliM [Fervidobacterium nodosum
           Rt17-B1]
          Length = 329

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 101/293 (34%), Gaps = 7/293 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +    +   + + +      K+     ++        +   + S   
Sbjct: 40  DFLRPQKFSKEQIRTVQMIHENFARSVSTYLSGKLRSFTSVNVVGIDQLTYDEYMKSIGN 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
               +  +   +  +  +  +  +   +L+ LLG   E I     R  + +E  + K+ I
Sbjct: 100 PSFITIFTAREFVGSSILNINLEIFYGILDVLLGGPGEVID--AKRVPTEIEIGIIKKEI 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             I   L+Q  ++     P +E        +      SNE V  +   +    +     +
Sbjct: 158 VNILTSLSQAWASVHPFIPVVE--STETNPQFVQVVPSNEMVLAVTFFVNFGKIEGYMSI 215

Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
             P   +             + K +  +++L++       +  +++  +I   K TL ++
Sbjct: 216 CWPSSVIEPIGEKLTTQSWFKIKQKEVTQELVENLKLNIKKAKLDVIAKIGETKLTLGEI 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +TL++G VI           +  NGK  +  + G+   NY ++IT  I   ++
Sbjct: 276 LTLEVGDVIRLREHYDEPIKIEVNGKTKFLGKPGQFKGNYAVKITKVIEEGEE 328


>gi|146307837|ref|YP_001188302.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp]
 gi|145576038|gb|ABP85570.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp]
          Length = 323

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 93/279 (33%), Gaps = 6/279 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q    L +  
Sbjct: 110 LRGTGLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
               + +   E                +E V     ++ ++       + +P   +    
Sbjct: 169 HAVMDIN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYSMIEPIR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++Q E  I         ++V +   +  ++  L+D++ ++ G VIP   
Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVEL 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            E    I+ ANG   +  +LG    N  +++ + I   +
Sbjct: 287 PEN--VIMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323


>gi|153954743|ref|YP_001395508.1| hypothetical protein CKL_2125 [Clostridium kluyveri DSM 555]
 gi|219855207|ref|YP_002472329.1| hypothetical protein CKR_1864 [Clostridium kluyveri NBRC 12016]
 gi|146347601|gb|EDK34137.1| FliM [Clostridium kluyveri DSM 555]
 gi|219568931|dbj|BAH06915.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 331

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 102/310 (32%), Gaps = 13/310 (4%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
            +   +   P       +        K   +    +   Y + +      ++  +V +  
Sbjct: 29  QEEEQQKVKPYDFRSPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKV 82

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            S Q   +   IHS     + +   +   S       +   V  +++ LLG S     + 
Sbjct: 83  ESVQQITYEEFIHSVPNPTILTIFKMPPLSGTVLFEINPQFVFEIIDLLLGGSGT--GKY 140

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  + ++K + K     + + L        E    +E          N     N+ + 
Sbjct: 141 KAREFTDIDKNIIKVVNEGLISNLKLAWEDVMEVETEVEGIET--NPALNQTLAPNDPIA 198

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLN 239
            I+ ++ +    +   + IP  ++ K           Q+  E    +  +    +   + 
Sbjct: 199 LISFSVELGKSTTFINICIPYLSIEKVLDKLVVQYWFQDGDEEVLAESREKLRERLNIVG 258

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +++   +   + T+ + + L IG V+    +      L    K  Y  + G +GKN  I 
Sbjct: 259 IHLTAVLGTVEVTVNEFLNLNIGDVLTLKEKTTDPVKLMLEDKIYYYGKPGIIGKNMGIE 318

Query: 300 ITDRINFDQK 309
           I D I+ D +
Sbjct: 319 ILDIIDKDVE 328


>gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
 gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
 gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 332

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 107/283 (37%), Gaps = 7/283 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   Y + +      +   +V +   + +   +   IHS +   + +   
Sbjct: 48  SKEHIRTLELVHDNYARIISNYLTGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITVFK 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +   + N     +    + +++ LLG + +   ++  +  S ++K + ++    + + L 
Sbjct: 108 MPPLAGNIIFETNPQFSLQVIDILLGGNGDR--KVEAKEFSDIDKNIMRQITTGMISNLK 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
               +  E  P +E          N     N+ V  I  ++ +   ++   + IP  ++ 
Sbjct: 166 LAWESILEVEPEVEGIET--NPAINQTLAPNDPVALITFSVEMNKRSTFINMCIPYLSIE 223

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           K         S +N  E+   +  +      ++++V++   +     T++D + L +G V
Sbjct: 224 KILDKLVVQYSFKNDDESLKAESREKIEEGIHKVDVDVIAELGKTSLTVEDFLKLNVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           I    R  +   +    +E Y  + G  GKN  + I D  + +
Sbjct: 284 IKLDTRSSSPIKVYVGNEECYCAKPGVSGKNMGVMILDITDKE 326


>gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans
           ISDg]
 gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans
           ISDg]
          Length = 325

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 30/291 (10%), Positives = 96/291 (32%), Gaps = 7/291 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +    +   Y + L       +  +V +   + ++  +    ++   
Sbjct: 39  DFHRPSKFSKEHLRTLDIIFEHYGRLLSTHLPAYLRKNVQVEVINSEAVVYQEFTNALSN 98

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             +      +    N  I  + N+   +++ +LG S   + +  +R  S +E  + +R  
Sbjct: 99  PVLLGIIDFAPLEGNIIIELAENVGYAIVDRMLGGSGNPLEK--SRDFSEIELVIIERIF 156

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             ++ +L +  +   + +P L         +       ++  + + +N+ I N+     +
Sbjct: 157 TVMTNILAEPWANVVKLNPRLIRIET--NSQFAQIISPSDMASIVTLNIKIGNIEGMMNV 214

Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +P   L                 E    +  +       +  + +   +     +L ++
Sbjct: 215 CLPYACLEVIIDKLNTKYWYSTMQEKGDSNYQEFIETAISRARIPVKAVLGKSSISLNEL 274

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           + ++ G +I    +      +     + ++   G    +Y ++I+  I  +
Sbjct: 275 INMQKGDIIKLDRKIDDELSVYVGNIKKFTALPGASSDSYAVKISTIIREE 325


>gi|15639708|ref|NP_219158.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|6225364|sp|P74927|FLIM_TREPA RecName: Full=Flagellar motor switch protein FliM
 gi|2196898|gb|AAB61256.1| flagellar switch protein [Treponema pallidum]
 gi|3323023|gb|AAC65687.1| flagellar motor switch protein (fliM) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|291060085|gb|ADD72820.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 344

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 106/312 (33%), Gaps = 11/312 (3%)

Query: 2   RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
            G +  ++  P+     I L          K   +  S +   + +        ++   V
Sbjct: 19  SGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFARLTTTSLSAQLRSMV 78

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
            +   S     +   I S       +  ++     N  +    ++  ++++ L G + + 
Sbjct: 79  HVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSITFSIIDRLFGGTGQA 138

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
                 R L+ +E  + +  I +I A + +  +   +  P L         +       +
Sbjct: 139 AKV--QRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQIET--NPQFAQIVPPS 194

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235
           E V  + +   +          IP  T+              +   + +   +     K 
Sbjct: 195 EMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGVLRDKL 254

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294
             +++++   +   + +++D++ L++G +I           +LS   ++ + C+ G VGK
Sbjct: 255 STVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGK 314

Query: 295 NYTIRITDRINF 306
               +I +RI  
Sbjct: 315 KIAAQILERIES 326


>gi|330502773|ref|YP_004379642.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01]
 gi|328917059|gb|AEB57890.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01]
          Length = 323

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 93/279 (33%), Gaps = 6/279 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D++    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q    L +  
Sbjct: 110 LRGTGLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
               + +   E                +E V     ++ ++       + +P   +    
Sbjct: 169 HAVMDIN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYSMIEPIR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++Q E  I         ++V +   +  ++  L+D++ ++ G VIP   
Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVEL 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            E    ++ ANG   +  +LG    N  +++ + I   +
Sbjct: 287 PEN--VVMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323


>gi|146341901|ref|YP_001206949.1| flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278]
 gi|146194707|emb|CAL78732.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278]
          Length = 400

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 98/295 (33%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +F   
Sbjct: 87  DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V S      W +       + L+ ++++ LLG     T  ++  R  +T+E 
Sbjct: 147 MNSIPLPAVLSVFKAEEWENFGLAMVDSTLIYSIIDVLLGGRRGNTQLRVEGRPYTTIET 206

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR I  + A   Q           ++        +             + + + +E+
Sbjct: 207 NLVKRLIEVVLADAEQAFRPLSPVRFTIDRLET--NPRFAAISRPANAAILVKLRIDMED 264

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + L     +   +       FA +  +  V +D  +     
Sbjct: 265 RGGNIELLLPYATIEPIRPVLLQMFMGEKFGRDPVWEGHFATEITRAEVAVDAVLYEADV 324

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK ++ LK+G  +P   R      +      +    +GRVG    IR+T  +  
Sbjct: 325 PLKQLMRLKVGDTLPLDIRPDALVAVRCGNTMLTEGRMGRVGDRVAIRVTKNLRK 379


>gi|319944169|ref|ZP_08018445.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC
           51599]
 gi|319742464|gb|EFV94875.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC
           51599]
          Length = 349

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 97/298 (32%), Gaps = 11/298 (3%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P       R+                +   + + L       M  + +I+++    G++S
Sbjct: 58  PYDLARQERIIRG------RMPALELIHERFARSLGLAMFTFMQRNPEITHSDPVVGRYS 111

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
             + + +     +       + +  +     LV T+++ + G +   + +   R  S  E
Sbjct: 112 DFLGTIQLPASINIMQTRPLAGSALLVLDGQLVSTIVDLMFGGTGRPMRKSEGREFSMTE 171

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           ++L K+ I   S+   +   +                 +     +  E V +    +   
Sbjct: 172 QRLIKKLIDLSSSEYGRAWESIHPMELVFTR--SESQPQFANIAIPAEMVVSTTFTLDFN 229

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKK 250
             + +  + IP   L        SS N +  + +   +   +++     V +   +    
Sbjct: 230 GQSGTIQICIPYSVLEPIRDTLSSSLNTNSGEEKRSWLGQMSKEIKPAGVELVAELTTAT 289

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            TL +++ L+ G VI         A+L      I++   G     Y +RI    ++  
Sbjct: 290 LTLGELMKLRTGDVIEIETGPG--AMLKIGQVPIFNGRYGEHNGRYAVRIDTVHSYTD 345


>gi|189025946|ref|YP_001933718.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
           pallidum SS14]
 gi|189018521|gb|ACD71139.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
          Length = 344

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 106/312 (33%), Gaps = 11/312 (3%)

Query: 2   RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
            G +  ++  P+     I L          K   +  S +   + +        ++   V
Sbjct: 19  SGDASIEDARPISDTRKIKLYDFRRPDKFSKEQMRTLSLMHETFARLTTTSLSAQLRSMV 78

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
            +   S     +   I S       +  ++     N  +    ++  ++++ L G + + 
Sbjct: 79  HVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSITFSIIDRLFGGTGQA 138

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
                 R L+ +E  + +  I +I A + +  +   +  P L         +       +
Sbjct: 139 AKV--QRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQIET--NPQFAQIVPPS 194

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235
           E V  + +   +          IP  T+              +   + +   +     K 
Sbjct: 195 EMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGVLRDKL 254

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294
             +++++   +   + +++D++ L++G +I           +LS   ++ + C+ G VGK
Sbjct: 255 STVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGK 314

Query: 295 NYTIRITDRINF 306
               +I +RI  
Sbjct: 315 KIAAQILERIES 326


>gi|90423020|ref|YP_531390.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
 gi|90105034|gb|ABD87071.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
          Length = 404

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 101/295 (34%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +FS  
Sbjct: 91  DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDY 150

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           + S     V S      W +       + L+ ++++ LLG    +   ++  R  +T+E 
Sbjct: 151 MSSIPLPAVLSVFKAEEWENFGLATVDSALIYSMIDVLLGGRRGQASMRVEGRPYTTIET 210

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR +  + A   Q        +  ++        +             + +++ +E+
Sbjct: 211 NLVKRLVEVVLADAEQAFRPLSPVTFKIDRLET--NPRFAAITRPANAAILVRLHIDMED 268

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + +     +   +        + +  Q  +++D  +   + 
Sbjct: 269 RGGNIELLLPYATIEPIRAVLMQMFMGEKFGRDPIWEGHLSTEIAQAEISVDAVLYEAEI 328

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK ++ LK+G  +P   R      +      +    +GRV     IR+T ++  
Sbjct: 329 PLKQLMRLKVGDTLPLELRADALVAVRCGNVTLTEGRMGRVADRVAIRVTKQLRK 383


>gi|66768580|ref|YP_243342.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573912|gb|AAY49322.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 337

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 18/303 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G++   + S    I+  R+                +   + +         +    D+
Sbjct: 31  LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S       KF+  +HS       +            I     LV T+++N  G       
Sbjct: 80  SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E ++ +  + Q  A L +  +   +     E                 E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197

Query: 181 VTTINMNMTIENVASSFVLIIPQ--ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
           V     ++ +E          P   +            Q+   ++ +        +    
Sbjct: 198 VVVCRFHVELEG-GGRRDPHHPAVLDAGADPRTARRRHQSDRNDRDDSWNVMLREQLDTA 256

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V + + +  K+ +L+ +  LKIG ++P     +    L      +++ E G    N  +
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAV 314

Query: 299 RIT 301
           +IT
Sbjct: 315 KIT 317


>gi|83312597|ref|YP_422861.1| flagellar motor switch protein FliM [Magnetospirillum magneticum
           AMB-1]
 gi|82947438|dbj|BAE52302.1| Flagellar motor switch protein fliM [Magnetospirillum magneticum
           AMB-1]
          Length = 393

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 101/291 (34%), Gaps = 4/291 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 99  DKSGIQAILNSALVSYERLPMLEVVFDRLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDY 158

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     + +      W +   +   ++L+ ++++ LLG        ++  R  +T+E+
Sbjct: 159 LNSIPLPAMLAVFKAEEWDNFGLLTVDSSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 218

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R +  + + L+         +   +        +  T    +       + + +E+
Sbjct: 219 NLVERMVHVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMED 276

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     + L     +   +        A + +   V ++  ++ +  
Sbjct: 277 RGGRLELLLPYATLEPVRELLLQMFMGEKFGRDSIWETHLAEELWLTEVELEAVLDEQVM 336

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            L++V+  K G          +   +      ++   +GR G++  I++ +
Sbjct: 337 NLREVLNWKPGSKFMLNATADSQIDMRCGEVAMFRGRMGRKGQHIAIQVDE 387


>gi|294500928|ref|YP_003564628.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551]
 gi|294350865|gb|ADE71194.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551]
          Length = 328

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 103/282 (36%), Gaps = 7/282 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   Y + L  +F  ++   V +S  S     +   I S  +  + +  +
Sbjct: 49  SKDQIRSLTRIHENYARMLINVFSAQLRNVVQVSVVSVDQIPYEEFIRSVPKVTILNVIA 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +  +  + N+   +L+ LLG   E+  ++ N  L+ +E  L +  + +    + 
Sbjct: 109 VPPLEGHIIMEVNPNIAYAMLDRLLGGQGESGGEISN--LTEIETSLVRNLLEKTLDSMR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S+  E  P  E        +       NE V  I++N+ I +      L IP  TL 
Sbjct: 167 EAWSSIAEIEP--ETSEFEVNPQFLQVISPNEIVIVISLNVQIGDETGMINLCIPHVTLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q+  +  +   ++    +     + +   +     +++D + L  G V
Sbjct: 225 PIVSKLSVHYWMQSSKKEPNVQEVEQLKEQINDAELQVVAELGTADISIEDFLALDAGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           I           +    +  +  + G+V + + ++I D +  
Sbjct: 285 IRLQTSVHNPLTIYVGEQPKFIAQPGKVSRKFAVQILDDVKR 326


>gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum
           JL354]
          Length = 339

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 4/293 (1%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L  +            +   +     +      +      +++S     S +F   ++  
Sbjct: 47  LRAVIESRVVSHARLPMLEVVCERMVRSFATSMRNLTSDAIEVSLDDIASVRFGDFMNRV 106

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAK 136
               + +   + +W     +    NL+  +++ LLG        ++  R+ +T+E  L  
Sbjct: 107 PLPCMIAVFKVPAWQDYGLVTIEANLIYAVVDALLGGRKGAAPRKIEGRAFTTIETTLVS 166

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
           + I  +    +         +  LE        +           +     + ++    +
Sbjct: 167 KMIELVLREFSTAFEPIAPITMELERIET--SPRFAAIAGPTNVASAATFAVDMDGRGGN 224

Query: 197 FVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
           F +++P  TL             +         D    +  +  V I T +  ++  L D
Sbjct: 225 FTILLPFATLEPVRGKLSQRFMGEKLGGDNTWRDHMRNEILRTEVEIYTVLGEREMRLAD 284

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           V +L+IGQ IPF         +   G  +   ++GR   +  I I D I   Q
Sbjct: 285 VHSLEIGQTIPFDVTPDDPFEVCCGGVPLARAQIGRQRNHVAIGIVDTIKQGQ 337


>gi|23015785|ref|ZP_00055552.1| COG1868: Flagellar motor switch protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 395

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 101/291 (34%), Gaps = 4/291 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 101 DKSGIQAILNSALVSYERLPMLEVVFDRLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDY 160

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     + +      W +   +   ++L+ ++++ LLG        ++  R  +T+E+
Sbjct: 161 LNSIPLPAMLAVFKAEEWDNFGLLTVDSSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 220

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R +  + + L+         +   +        +  T    +       + + +E+
Sbjct: 221 NLVERMVHVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMED 278

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     + L     +   +        A + +   V ++  ++ +  
Sbjct: 279 RGGRLELLLPYATLEPVRELLLQMFMGEKFGRDSIWETHLAEELWLTEVELEAVLDEQVM 338

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            L++V+  K G          +   +      ++   +GR G++  I++ +
Sbjct: 339 NLREVLNWKPGSKFMLNATADSQIDMRCGEVAMFRGRMGRKGQHIAIQVDE 389


>gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
           3645]
 gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
           3645]
          Length = 376

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 12/297 (4%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           +  +P       R+       K   +   S+   + +         +   V++  TS   
Sbjct: 58  EKITPYDFKRPERVG------KEQMRALQSMHEGFGRNFGAALSGLLRNIVEVKLTSVDQ 111

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +S  I S +    F+  + S    N  +  + +++  +++ LLG   +    +  R L
Sbjct: 112 LTYSEFIFSLENPSCFNLLTASPLEGNLILDINPSILYPIIDRLLGG-GKESSPVSRRPL 170

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           + +E  L  R        L        +   ++         +       NE +  I+  
Sbjct: 171 TEIELTLVARITNLFLRELRIAWENVLDLQLSVVRVE--SNPQLVQIVPPNEVIVLISFE 228

Query: 188 MTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +TI +V     L IP  ++ +              +   SE+     + +    +V +  
Sbjct: 229 LTIGDVRGMMNLCIPFNSIERIGGKLTANTWFAYGTSEVSEESRQALSTQIDGASVEVGV 288

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            +   K T +D++ L++G VI      +    +S NG   +    G       I++ 
Sbjct: 289 TLAETKITTEDLLELRVGDVITTPKDSREPLKVSVNGVTKFLAFPGAFKGRKAIQVD 345


>gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
 gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
 gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
          Length = 352

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       M   V+I   S     +   + S      F+  S
Sbjct: 50  SKEQLRAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +  + ++   +++ LLG   +       R  S +E  L    + Q+   L 
Sbjct: 110 MKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYEST--REFSDIELNLLDTILRQMMQNLK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +   E  PN++       +        NE V  + M + I + +    L  P  +L 
Sbjct: 168 EAWAPITEIFPNVDVKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLE 225

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  S        +  +              VN+   +   K TL++++ L++G ++
Sbjct: 226 SVLSRLASRDIMLSETSSKKSRNKELQALLGGAKVNVAAILGETKLTLREILDLEVGDIM 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                     I++ +G+E +   +G      TI I + I  ++  +K  L  
Sbjct: 286 RLDRPADDTVIINVDGREKFLASIGLHRYRKTIEIKEMIKTEKDQVKEILEM 337


>gi|255523752|ref|ZP_05390718.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
 gi|296186755|ref|ZP_06855157.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
 gi|255512621|gb|EET88895.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
 gi|296048792|gb|EFG88224.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
          Length = 332

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 104/310 (33%), Gaps = 14/310 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +   +   P       +        K   +    +   Y + +      ++  +V +   
Sbjct: 30  EEEKQKVKPYDFRSPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S Q   +   IHS     + +   +   S +     +      +++ LLG       +  
Sbjct: 84  SVQQITYEEFIHSVPNPTILTVFKMPPLSGSVLFETNPQFSFEIIDVLLGGKGT--GKYK 141

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + ++K +       + + L        E +  +E          N     NE V  
Sbjct: 142 AREFTDIDKNIMMVINTGLISNLKLAWDDVLEVNTEIEGLET--NPALNQTLAPNEAVAL 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQS-EDLIDPFARKTYQLN 239
           I  ++ +   ++   + IP  ++ K           Q+ ++    E+      ++   +N
Sbjct: 200 ITFSVEMGKSSTFINICIPYLSIEKVLDKLVVQYWFQDTNDEAILEESRVKLRQRLNIVN 259

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+   +     T+ D + L +G V+    +  T   L    K     + G +GKN  ++
Sbjct: 260 MNLTAVLGTTNITVDDFLRLGVGDVLTLNDKANTPIKLMVEDKPYCYGKPGVLGKNMGVQ 319

Query: 300 ITDRINFDQK 309
           I D I+ D +
Sbjct: 320 ILDIIDKDVE 329


>gi|75675317|ref|YP_317738.1| flagellar motor switch protein FliM [Nitrobacter winogradskyi
           Nb-255]
 gi|74420187|gb|ABA04386.1| Flagellar motor switch protein FliM [Nitrobacter winogradskyi
           Nb-255]
          Length = 401

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 103/295 (34%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +F   
Sbjct: 88  DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 147

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V S      W +       ++L+ ++++ LLG    ++  ++  R  +T+E 
Sbjct: 148 LNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRGQSSLRIEGRPYTTIET 207

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR +  + A   Q        S +++        +             + + + +E+
Sbjct: 208 NLVKRLVEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAITRPANAAILVRLRIDMED 265

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + L     +   +        A +  Q  + +D  +   + 
Sbjct: 266 RGGTIELLLPYATIEPIRNVLLQMFMGEKFGRDPIWESHLATEIAQAQIAVDAVLYEAEI 325

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            L+ ++TLK+G  +P   R      +      +    +GRVG    IR++  +  
Sbjct: 326 PLRQLMTLKVGDTLPLEMRPDASVAVRCGSVTLTEGRMGRVGDRVAIRVSRHLRK 380


>gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
           49176]
 gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
           49176]
          Length = 326

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 7/292 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K   +   S+   Y + L       +   V +     ++  +    +S   
Sbjct: 39  DFARPSKFSKDHLRTLESIFEHYGRLLSANLPAYLRKTVQVEVRGSEAITYQEFQNSLSN 98

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             + +  +L     +  +  SNNL  T+++ LLG     I +   R  S +E  + +R +
Sbjct: 99  PVLLAIMNLPPLKGSCIMEMSNNLGYTIIDRLLGGEGNPIEKT--RDFSEIEIVVLERIL 156

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
              +  L +      E +P L         +        E    I +++ I  V      
Sbjct: 157 NTCTNYLEEPWHNVVEITPTLMRIET--NAQYAQIISPQEMTALITLSIKIGTVEGFMSF 214

Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +P   L                 E    +  +       +  + I   +     ++ D 
Sbjct: 215 CLPFTALEDVMDRLNTKFWFSALQEKDDTNYGEQIEEIIDRAQIPIRAVLGKSVVSVNDF 274

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           V L+ G V+    +      +     + +    G     Y +RIT  I  ++
Sbjct: 275 VNLQPGDVVRLNAKVDDELDVFVGNMKKFKALPGASSGVYALRITKVIREEE 326


>gi|148256789|ref|YP_001241374.1| flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1]
 gi|146408962|gb|ABQ37468.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1]
          Length = 400

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 98/295 (33%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +F   
Sbjct: 87  DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V S      W +       + L+ ++++ LLG     T  ++  R  +T+E 
Sbjct: 147 MNSIPLPAVLSVFKAEEWENFGLATVDSTLIYSIIDVLLGGRRGNTQLRVEGRPYTTIET 206

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR I  + +   Q           ++        +             + + + +E+
Sbjct: 207 NLVKRLIEVVLSDAEQAFRPLSPVRFTIDRLET--NPRFAAISRPANAAILVKLRIDMED 264

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + L     +   +       FA +  Q  V +D  +     
Sbjct: 265 RGGNIELLLPYATIEPIRPVLLQMFMGEKFGRDPVWEGHFATEIAQAEVAVDAVLYEADV 324

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK ++ LK+G  +P   R      +      +    +GRVG    IR+T  +  
Sbjct: 325 PLKQLMRLKVGDTLPLDIRPDALVAVRCGSTMLTEGRMGRVGDRVAIRVTKNLRK 379


>gi|148380702|ref|YP_001255243.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934250|ref|YP_001384986.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934570|ref|YP_001388456.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           Hall]
 gi|170761147|ref|YP_001788060.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str.
           Loch Maree]
 gi|226950156|ref|YP_002805247.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290186|emb|CAL84305.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930294|gb|ABS35794.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930484|gb|ABS35983.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           Hall]
 gi|169408136|gb|ACA56547.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str.
           Loch Maree]
 gi|226842452|gb|ACO85118.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str.
           Kyoto]
 gi|322807053|emb|CBZ04627.1| flagellar motor switch protein FliM [Clostridium botulinum H04402
           065]
          Length = 331

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +   +   P       +        K   +    +   Y + +      ++  +V +   
Sbjct: 30  EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S Q   +   IHS     + +   +   + +     +   V  +++ LLG +     ++ 
Sbjct: 84  SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + ++K + K+    +   L        E    +E          N      E V  
Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
           I  ++ +    +   + IP  ++ K           +   E   E        +   +++
Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     T+++ + L +G V+    R +    L    +  Y  + G +GKN  ++I
Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVALDTRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319

Query: 301 TDRINFDQK 309
            D+I+ D +
Sbjct: 320 LDQIDKDVE 328


>gi|295706274|ref|YP_003599349.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319]
 gi|294803933|gb|ADF40999.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319]
          Length = 333

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 103/286 (36%), Gaps = 7/286 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  + +   Y + L  +F  ++   V +S  S     +   I S  +  + +  +
Sbjct: 49  SKDQIRSLTRIHENYARMLINVFSAQLRNVVQVSVVSVDQIPYEEFIRSVPKVTILNVIA 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     +  +  + N+   +L+ LLG   E+  ++ N  L+ +E  L +  + +    + 
Sbjct: 109 VPPLEGHIIMEVNPNIAYAMLDRLLGGQGESGEEISN--LTEIETSLVRNLLEKTLDSMR 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S+  E  P  E        +       NE V  I++N+ I +      L IP  TL 
Sbjct: 167 EAWSSIAEIEP--ETSEFEVNPQFLQVISPNEIVIVISLNVQIGDETGMINLCIPHVTLE 224

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                       Q+  +  +   ++    +     + +   +     +++D + L  G V
Sbjct: 225 PIVSKLSVHYWMQSSKKEPNVQEVEQLKEQINDAELQVVAELGKADISIEDFLALDAGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           I           +    +  +  + G+V +   ++I D +    + 
Sbjct: 285 IRLQTSVHNPLTIYVGEQPKFIAQPGKVSRKVAVQILDDVKRRNER 330


>gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
           16294]
 gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
           16294]
          Length = 366

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 107/315 (33%), Gaps = 6/315 (1%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +S  +N  P   + L          K   +    +     + L       M   V+I   
Sbjct: 26  ESDEENLLPQRQVTLYDFKRPNRVSKEQLRAFRGVHDKMARSLASQISSIMRSIVEIQLH 85

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S     +   + S      F+  S+     +  I  + ++   +L+ LLG   E      
Sbjct: 86  SVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGIIEINPSIAFPMLDRLLGGKGEPFD--A 143

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
           +R  S +E  L +  +  + + L +      E  P +E       +        NE V  
Sbjct: 144 SREFSDIELSLFETILRVMMSTLKEAWGPVMEIYPTIESKESSPNV--VQIVAQNEIVVM 201

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVN 241
           + M + I + +    +  P  +L        S        +  +              VN
Sbjct: 202 VVMEIIIGHSSGMMNICYPVISLEPVLPKLASRDLMLNETSSKKSRNTELKVLLGGAKVN 261

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           ++  +     ++ D++ LK+G VI           ++ +GKE +  E+G      +I IT
Sbjct: 262 VEANLGDADLSMHDILELKVGDVIRLSSAANDIVTVAVDGKERFRGEIGLRRFRKSISIT 321

Query: 302 DRINFDQKSLKNFLH 316
           + I  ++ ++K  L 
Sbjct: 322 EIIETEKDTVKRALE 336


>gi|3894104|emb|CAA11954.1| flagellar C-ring protein [Sinorhizobium meliloti]
          Length = 315

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 158/312 (50%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   N       L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y  
Sbjct: 4   STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            ++G  + +I +  +  +    SL +W ++F +GC + ++I L+E LLGA   +I +   
Sbjct: 64  FRTGLRNDLIAALGDGVLLGDFSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           RSLS +E  +A      I+ VL   ++      P +   Y+     K    L + F  +I
Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLEDVFAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M + +  V S+F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ 
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRIVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           RI L+  TL  +  L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D  
Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303

Query: 305 NFDQKSLKNFLH 316
             +Q  L++ + 
Sbjct: 304 GSEQDILRHIMS 315


>gi|254785477|ref|YP_003072906.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901]
 gi|237685691|gb|ACR12955.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901]
          Length = 332

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 97/277 (35%), Gaps = 6/277 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D+S    Q  KF   +H+       +      
Sbjct: 48  RMPTLEMINERFARYTRISMFNLLRRTADVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRP 107

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 I     LV  L++N  G       ++  R  +  E ++ +  + Q+   L++  
Sbjct: 108 LRGTALIILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLEQVFVDLHEAW 166

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
              +      E                +E V     ++ ++       + +P   +    
Sbjct: 167 KAVKLID--FEYINSEVNPSMANIVSPSEVVVVSTFHVELDGGGGELHITMPYSMVEPIR 224

Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            I  +  Q+ ++ + +  +        +  V+++  +  +  TL+++V LK+G +IP   
Sbjct: 225 EILDAGLQSDTDERDDRWVQALREDVMRARVDLECDVVRRDITLREIVDLKVGDIIPVTM 284

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            E   A   ANG  ++  ++G+   N  +RI D ++ 
Sbjct: 285 PEVHIAT--ANGVPMFQAKIGQCNNNLALRILDYVDR 319


>gi|118475490|ref|YP_892646.1| flagellar motor switch protein FliM [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414716|gb|ABK83136.1| flagellar motor switch protein FliM [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 363

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 100/292 (34%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       M   V+I   S     +   + S      F+  S
Sbjct: 50  SKEQLRAIKGIHDKLARNLASQISSIMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFS 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + ++   +++ LLG + +      NR L+ +E  L    +  +   L 
Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGNGDGFE--SNRELTDIEINLLDAILRIMMQRLK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  PN+E       +        NE V  + M + I N +    +  P   L 
Sbjct: 168 ESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMINICYPVIYLE 225

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +           +  V  +  +     ++ + + L+ G ++
Sbjct: 226 PILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGRTVISVNEFLNLQEGDIL 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    AI+  + K+++  ++G      +I+I + I  D+  +KN L +
Sbjct: 286 RLDKSADDKAIVCIDKKDVFLAQIGLHRFRKSIKIEELIKTDKDEIKNILEQ 337


>gi|115523559|ref|YP_780470.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
 gi|115517506|gb|ABJ05490.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
          Length = 403

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 105/295 (35%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +FS  
Sbjct: 90  DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDY 149

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V S      W +       ++L+ ++++ LLG    +T  ++  R  +T+E 
Sbjct: 150 MNSIPLPAVLSVFKAEEWENFGLATVDSSLIYSMIDVLLGGRRGQTSMRIEGRPYTTIET 209

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR +  + A   Q        +  ++        +             + +++ +E+
Sbjct: 210 NLVKRLVEVVLADAEQAFRPLSPVTFKIDRLET--NPRFAAITRPANAAILVRLHIDMED 267

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + +     +   +        A +  Q  +++D  +   + 
Sbjct: 268 RGGNIELLLPYATIEPIRAVLMQMFMGEKFGRDPIWEGHLATEITQAQISVDAVLYEAEL 327

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK +++LK+G  +P   R      +      +    +GRV     IR+T ++  
Sbjct: 328 PLKQLMSLKVGDTLPLEMRPDALVSVRCGSVILTEGRMGRVADRVAIRVTKQLRK 382


>gi|239906894|ref|YP_002953635.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1]
 gi|239796760|dbj|BAH75749.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1]
          Length = 326

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 89/297 (29%), Gaps = 10/297 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                        R+            +   +   + +         M    D++  S  
Sbjct: 32  DSGVVVFDLSNQDRIIRG------RMPVLEIINDRFARLASNAMANAMRKRADVNPISID 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF   + S       +   L     N  +   + LV  ++E+  G +     ++  R 
Sbjct: 86  MSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVDSRLVFAMVESFFGGAGSQP-KIEGRD 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E+ +  R +      + +      E   ++E        +       ++ V  +  
Sbjct: 145 FTPIEQAIINRVVRIALENMEESWQPVHEV--HIELVRSEVNPQFAAIVPPSDVVVVVTF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +EN   S ++ +P  T+         S Q +        I  F  +  +  V +  R
Sbjct: 203 EVELENAIGSLIVCLPYATIEPIRSKLYASFQTERLEVDHAWIARFKERLMETPVELLVR 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
               + T + +++LK G ++   +           G   +    G V  N   +I  
Sbjct: 263 FGRSQITGRQLLSLKPGDILMLENDVDELLEAEIQGVRKFQGIPGLVKSNKAFQIVK 319


>gi|218886491|ref|YP_002435812.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757445|gb|ACL08344.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 326

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 95/318 (29%), Gaps = 22/318 (6%)

Query: 1   MRGQSIHKNTS---------PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFK 51
           + G  I   T          P       R+            +   +   + +       
Sbjct: 17  LSGGEIESETDIPEDDSGIVPFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALS 70

Query: 52  EKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENL 111
             +   V+++  S    KF   + S       +   +     N  I   + LV  L+EN 
Sbjct: 71  NTVRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVDSRLVFALVENF 130

Query: 112 LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171
            G +     ++  R  + +E+ +  R I      + +      +   +LE        + 
Sbjct: 131 FGGAGSQP-KIEGREFTRIEQAIVDRVIKIALDNMEESWRPVHDV--SLELVRSEINPQF 187

Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDP 230
                 ++ V  I   + +E    S V+ +P  T+         S Q +        +  
Sbjct: 188 AAIVPPSDVVVVITFEVELETAIGSMVICLPYATIEPIRSKLHASFQTERLEVDHAWVSR 247

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +  +  VN+       K T   ++ L++G V+            +  G   +    G
Sbjct: 248 LKERLLETPVNLKIHFGESKITGNQLLRLQVGDVLLLDTDTDDLLECTVQGVTKFWGISG 307

Query: 291 RVGKNYTIRITDRINFDQ 308
            V  N   +I   I  ++
Sbjct: 308 TVKANKAFQI---IKEEE 322


>gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
           1]
 gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
           1]
          Length = 365

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 110/315 (34%), Gaps = 6/315 (1%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +S   N  P   + L          K   +    +     + L       M   V+I   
Sbjct: 26  ESSDDNMLPQRQVTLYDFKRPNRVSKEQLRAFRGVHDKMARSLASQISSIMRSIVEIQLH 85

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S     +   + S      F+  S+     +  I  + ++   +L+ LLG   E      
Sbjct: 86  SVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGVIEINPSIAFPMLDRLLGGKGEPFD--A 143

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
           +R  S +E  L +  +  + + L +      E  P +E       +        NE V  
Sbjct: 144 SREFSDIELSLFETILRVMMSTLKEAWGPVMEIYPTIESKESSPNV--VQIVAQNEIVVM 201

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVN 241
           + M + I + +    +  P  +L        S        +  +              VN
Sbjct: 202 VVMEIIIGHSSGMMNICYPVISLEPILPKLASRDLMLNETSSKKSRNTELQVLLGGAKVN 261

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           ++  +   + T++DV+ L+IG V+           +S +GKE +  ++G      +I+I+
Sbjct: 262 VEANLGDAELTMRDVLDLQIGDVVRLSSAANDIVTVSIDGKERFRGQIGLRRFRKSIQIS 321

Query: 302 DRINFDQKSLKNFLH 316
           + I+ ++ ++K  L 
Sbjct: 322 EIIDTEKDAVKRALE 336


>gi|153940240|ref|YP_001392022.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
           Langeland]
 gi|170756595|ref|YP_001782350.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str.
           Okra]
 gi|152936136|gb|ABS41634.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
           Langeland]
 gi|169121807|gb|ACA45643.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str.
           Okra]
 gi|295320037|gb|ADG00415.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
           230613]
          Length = 331

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +   +   P       +        K   +    +   Y + +      ++  +V +   
Sbjct: 30  EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S Q   +   IHS     + +   +   + +     +   V  +++ LLG +     ++ 
Sbjct: 84  SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + ++K + K+    +   L        E    +E          N      E V  
Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
           I  ++ +    +   + IP  ++ K           +   E   E        +   +++
Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     T+++ + L +G V+    + +    L    +  Y  + G +GKN  ++I
Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVALETKTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319

Query: 301 TDRINFDQK 309
            D+I+ D +
Sbjct: 320 LDQIDKDVE 328


>gi|150019115|ref|YP_001311369.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB
           8052]
 gi|149905580|gb|ABR36413.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB
           8052]
          Length = 332

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 105/283 (37%), Gaps = 7/283 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   Y + +      +   +V +   + +   +   IHS +   + +   
Sbjct: 48  SKEHIRTLELIHDNYARIISNYLTGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITIFK 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           ++  S       +    + +++ LLG   +   +   +  + ++K + ++    + + L 
Sbjct: 108 MAPLSGTIIFETNPQFSLQVIDVLLGGKGDR--KAQAKEFTDIDKNIMRQVTTGMISNLK 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
               +  E  P +E          N     N+ V  I  ++ +   ++   + +P  ++ 
Sbjct: 166 LAWDSVLEVEPEVETIET--NPAINQTLSPNDPVALITFSVEMNKRSTFINMCLPYLSVE 223

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           K         + +N +E    +  +   +   +++V I   +     T+ D + L +G V
Sbjct: 224 KILDKLVVQYAFKNDNEASMAESREKLEKGINKVDVEIVAELGTANITVDDFLKLTVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           I   ++  +   +    +E Y  + G VGKN  + I D  + +
Sbjct: 284 IKLDNKSSSPIKVYVGNEECYYAKPGVVGKNAGVMILDITDKE 326


>gi|168183192|ref|ZP_02617856.1| flagellar motor switch protein FliM [Clostridium botulinum Bf]
 gi|237796179|ref|YP_002863731.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str.
           657]
 gi|182673661|gb|EDT85622.1| flagellar motor switch protein FliM [Clostridium botulinum Bf]
 gi|229262117|gb|ACQ53150.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str.
           657]
          Length = 331

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +   +   P       +        K   +    +   Y + +      ++  +V +   
Sbjct: 30  EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S Q   +   IHS     + +   +   + +     +   V  +++ LLG +     ++ 
Sbjct: 84  SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + ++K + K+    +   L        E    +E          N      E V  
Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
           I  ++ +    +   + IP  ++ K           +   E   E        +   +++
Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     T+++ + L +G V+    R +    L    +  Y  + G +GKN  ++I
Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVSLETRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319

Query: 301 TDRINFDQK 309
            D+I+ D +
Sbjct: 320 LDQIDKDVE 328


>gi|187933524|ref|YP_001885005.1| flagellar motor switch protein FliM [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721677|gb|ACD22898.1| flagellar motor switch protein FliM [Clostridium botulinum B str.
           Eklund 17B]
          Length = 331

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 105/314 (33%), Gaps = 11/314 (3%)

Query: 1   MRGQSIHKNTSPLHPIL----LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL 56
           +    +   T+P         L          K   +    +   + +        ++  
Sbjct: 17  LSTGELEPETAPKDDEKHKIKLYDFKSPQKFSKDHIRTLELIHDNFARITSNYLTGQIRK 76

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V +   + +   +   IHS +   + +   +   + +     +      +++ LLG S 
Sbjct: 77  NVKVKIETVEQITYEEFIHSVQNPTIITIFKMPPLTGSIIFETNPQFSFQIIDILLGGSG 136

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
           +   ++ N+  S ++K + ++    + + L          SP +E          N    
Sbjct: 137 DR--KIGNKEFSDIDKNIIRQVTTGMISNLKLAWEDILNVSPEVEGIET--NPAINQTLA 192

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFAR 233
            NE V  I  ++     ++   + IP  ++ K           QN  E    +       
Sbjct: 193 PNEPVALITFSVEFGEHSTFMNMCIPYLSIEKVLDKLVVQYWFQNDDEALIAESRVKMEE 252

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
              ++++ +   +      + D + L  G +I   ++  +   +    +E Y  + G  G
Sbjct: 253 GIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYVGDEECYYAKPGVTG 312

Query: 294 KNYTIRITDRINFD 307
           KN  + I D I+ +
Sbjct: 313 KNMGVAILDIIDKE 326


>gi|15895484|ref|NP_348833.1| flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824]
 gi|15025214|gb|AAK80173.1|AE007722_2 Flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824]
 gi|325509631|gb|ADZ21267.1| Flagellar switch protein FliM [Clostridium acetobutylicum EA 2018]
          Length = 331

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 98/291 (33%), Gaps = 7/291 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
             T      K   +    +   Y + +      ++  +V +   + +   +   IHS   
Sbjct: 40  DFTSPQKFAKEHIRTLELIHDNYSRIMSNYLTAQLRDNVKVKIETVEQITYEEFIHSVPN 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             + +   +     +     +   +   ++ LLG +     +   R ++ ++K +  +  
Sbjct: 100 PTILTIFRMPPLKGSILYETNPQFIYQAIDILLGGNG--AGKYKPREITDIDKNIIMKIN 157

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             +   L           P +E          N     +E V  I  ++ + N  +   +
Sbjct: 158 QGLIDNLKLAWGEVINVEPEIESLET--NPALNQTLAPHEPVALITFSVDVGNSHTYINI 215

Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            IP  ++ K           Q   E   ++      ++   + V +  ++   + T++D 
Sbjct: 216 CIPYLSIEKILDKLVVQYWYQENDEEIVKESRVELRKRLDVVEVPVIAKLGQTEITVEDF 275

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           + L IG VI    +      +       Y    G +GKN  I+I D+I+ D
Sbjct: 276 LRLSIGDVITLNSKCSDPVPVYIYDNLHYLAAPGILGKNMGIKILDKIDKD 326


>gi|296531938|ref|ZP_06894735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
           49957]
 gi|296267736|gb|EFH13564.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
           49957]
          Length = 355

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 102/300 (34%), Gaps = 4/300 (1%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           + ++  +         +   +     + +    +     +V++S     S +F   +++ 
Sbjct: 44  IEKVIARGLVSYERLPMLEIVFDRLVRIMSTSLRNFTSDNVEVSIEGITSLRFGDYLNTI 103

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAK 136
               +        W +   +   + L+ ++++ LLG     T  ++  R  +T+E+ L +
Sbjct: 104 PLPAMLVVFKAEEWDNYGLVVVDSALIYSVVDVLLGGRRGTTAMRIEGRPYTTIERGLIE 163

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
           R    +   L+       E     E        +       +       + + +E+    
Sbjct: 164 RLTEVVLKDLSDAFGPLAEVEFRFERLEV--NPRFAAISRPSNAAVLARLRVDMESRGGQ 221

Query: 197 FVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P  TL     + L     +   +        A +  Q  V +D  ++ +   L D
Sbjct: 222 LQLLLPYATLEPVRELLLQQFMGEKFGRDSIWETHLAEELRQTEVALDVVLDEQTMRLSD 281

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           VV L++G +I           L      ++  ++G       +RI   +    + L++ +
Sbjct: 282 VVRLQVGDLITLGVGPGAPVRLRCGDTSLFEGQVGGRKGRLAVRIDRAMPRQAEGLRDPV 341


>gi|168180850|ref|ZP_02615514.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC
           2916]
 gi|182668347|gb|EDT80326.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC
           2916]
          Length = 331

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +   +   P       +        K   +    +   Y + +      ++  +V +   
Sbjct: 30  EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S Q   +   IHS     + +   +   + +     +   V  +++ LLG +     ++ 
Sbjct: 84  SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + ++K + K+    +   L        E    +E          N      E V  
Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
           I  ++ +    +   + IP  ++ K           +   E   E        +   +++
Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     T+++ + L +G V+    R +    L    +  Y  + G +GKN  ++I
Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVALETRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319

Query: 301 TDRINFDQK 309
            D+I+ D +
Sbjct: 320 LDQIDKDVE 328


>gi|152984239|ref|YP_001349238.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7]
 gi|150959397|gb|ABR81422.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7]
          Length = 323

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 95/304 (31%), Gaps = 12/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++   +          R+                +   + ++        +    D++  
Sbjct: 29  EATPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             Q  KF   +HS       +   +              LV  L++N  G       ++ 
Sbjct: 83  GVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIE 141

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E ++ +  + Q    L +      E +   E                +E V  
Sbjct: 142 GREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMN--FEYVNSEVNPAMANIVSPSEVVVV 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
              ++ ++       + +P   +     +  +  Q+  ++Q E  I         + V +
Sbjct: 200 STFHIELDGGGGDLHITMPYSMIEPIREMLDAGFQSDHDDQDERWIKALREDVLDVQVPL 259

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +  ++  L+D++ ++ G VIP         ++ ANG   +  +LG    N  ++I +
Sbjct: 260 GATVVRRQLKLRDILHMQPGDVIPVEMP--EHMVMRANGVPAFKVKLGAHKGNLALQIVE 317

Query: 303 RINF 306
            +  
Sbjct: 318 AVER 321


>gi|326791530|ref|YP_004309351.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM
           5427]
 gi|326542294|gb|ADZ84153.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM
           5427]
          Length = 328

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 97/312 (31%), Gaps = 13/312 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M+  +  K          ++        K   +    +   Y + +       +   V  
Sbjct: 27  MQEANEQKGVKSYDFARPSKF------SKEQLRTLEIIFESYGRAISTYLSGHLRTMVSA 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
              + ++  +S   ++     + +         +  +  S N+  T+++ +LG S   + 
Sbjct: 81  EVMNAEAVTYSEFSNALINPVILAVTDFRPLKGSILLELSPNMGYTIIDRVLGGSGSGLE 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
            +  R  + +E+ + ++   Q   +L +      E  P LE        +       NE 
Sbjct: 141 TI--REFTDIERVILEKIFIQFVQLLAEPWQNVVELDPMLEKIET--NSQVVQIISPNEI 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
           +  + +N+ I NVA    + IP   +               K +       +   +   +
Sbjct: 197 IALVTLNIKIGNVAGMMNICIPHLVIESIMDKLNTKFWFAQKEQELGPSYHEYIEKMIEK 256

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             + I   +     T+++ + L    ++       +   +       ++   G       
Sbjct: 257 SRIPIKAILGKTHITVREFLELSRSDIVKLDKDIDSGLDIYVGNILKFTGSPGEYKNKVA 316

Query: 298 IRITDRINFDQK 309
           I+I   I  + +
Sbjct: 317 IKINHVIQREDE 328


>gi|118588708|ref|ZP_01546116.1| flagellar motor switch protein M [Stappia aggregata IAM 12614]
 gi|118438694|gb|EAV45327.1| flagellar motor switch protein M [Stappia aggregata IAM 12614]
          Length = 412

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 101/303 (33%), Gaps = 4/303 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           ++T       +  L            +   +     +      +     +V++S  S  S
Sbjct: 95  EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 154

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRS 126
            +F   ++S     +        W     I   ++L+ ++++ LLG     +  ++  R 
Sbjct: 155 VRFGDYLNSIPLPAILGVFKAEEWDGFGLITVESSLIYSIIDVLLGGGRGTSAVRVEGRP 214

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +T+E  L ++ +A I        +       NLE        +             + +
Sbjct: 215 YTTIETGLVQQMVALILQDAEHAFAPLSPVHFNLERLET--NPRFAAISRPANAAILVEL 272

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +E+   S  +++P  TL     + L     +   +        A + +   V +D  
Sbjct: 273 RIDMEDRGGSVEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLATEIHAAEVEVDAV 332

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +      L  V++L +GQ + F        ++      +    LG+V  +  IR+   + 
Sbjct: 333 LYETYLPLGRVLSLDVGQTLVFDKEPTDPVMIKCGNIPLTEGTLGKVDDSIAIRVAKNLR 392

Query: 306 FDQ 308
             +
Sbjct: 393 KPK 395


>gi|92116939|ref|YP_576668.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14]
 gi|91799833|gb|ABE62208.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14]
          Length = 401

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 102/295 (34%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +F   
Sbjct: 88  DNSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 147

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V S      W +       ++L+ ++++ LLG    +T  ++  R  +T+E 
Sbjct: 148 MNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIET 207

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR +  + A   Q        + +++        +             + + + +E+
Sbjct: 208 NLVKRLVEVVLADAEQAFRPLSPVTFSIDRLET--NPRFAAITRPANAAILVRLRIDMED 265

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + L     +   +        A +  Q  + +D  +   + 
Sbjct: 266 RGGTIELLLPYATIEPIRNVLLQMFMGEKFGRDPIWESHLATEIAQAQIAVDAVLYEAEI 325

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK ++ LK+G  +P   R      +      +    +GRVG    IR++  +  
Sbjct: 326 PLKQLMALKVGDTLPLDMRPDASVAVRCGSVTLTEGRMGRVGDRVAIRVSRHLRK 380


>gi|152997440|ref|YP_001342275.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1]
 gi|150838364|gb|ABR72340.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1]
          Length = 324

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 91/273 (33%), Gaps = 6/273 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D+S    Q  KF   +H+       +      
Sbjct: 49  RMPTLEMINERFARYTRISLFNMLRRTADVSSGGLQVMKFGEYVHTLYVPTSLNLVKFRP 108

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
             S         LV  L++N  G       ++  R  +  E ++ +  + Q+   L +  
Sbjct: 109 LRSTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFKDLTEAW 167

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           +   +    LE                +E V     ++ ++       + +P   +    
Sbjct: 168 APVLKLE--LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVR 225

Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  + + +       +    ++V +   +  +K +L +V+  K G +IP   
Sbjct: 226 ELLDAGVQSDVDEKDDRWGKSLEQDVKDIDVRLSVSVANRKISLGEVLKFKAGDIIPIEM 285

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                  + ANG   +  +LG   + Y++++ +
Sbjct: 286 P--EFVTVRANGVPTFKGKLGVSNERYSVQMQE 316


>gi|328543159|ref|YP_004303268.1| flagellar motor switch protein FliM [polymorphum gilvum
           SL003B-26A1]
 gi|326412905|gb|ADZ69968.1| Flagellar motor switch protein FliM [Polymorphum gilvum
           SL003B-26A1]
          Length = 411

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 100/297 (33%), Gaps = 4/297 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           ++T       +  L            +   +     +      +     +V++S  S  S
Sbjct: 94  EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 153

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL-GASHETIPQLYNRS 126
            +F   ++S     +        W     +   ++L+ ++++ LL G    T  ++  R 
Sbjct: 154 VRFGDYLNSIPLPAILGVFKAEEWDGFGLVTVESSLIYSIIDVLLGGGRGTTAVRVEGRP 213

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +T+E  L +R +  I A   Q  +       NLE        +             + +
Sbjct: 214 YTTIETNLVRRMVEIILADAEQAFAPLSPVHFNLERLET--NPRFAAISRPANAAILVEL 271

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +E+   +  +++P  TL     + L     +   +        A + +   + +D  
Sbjct: 272 RIDMEDRGGTIEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLASEIHAAEIEVDAV 331

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +      L  V++L +GQ + F         +      +    LG+V  +  IR+T 
Sbjct: 332 LYETHLPLGRVLSLDVGQTLIFDVDPHDPITIKCGNVPLTEGTLGKVEDSIAIRVTR 388


>gi|15964406|ref|NP_384759.1| flagellar motor switch transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|307318903|ref|ZP_07598334.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti AK83]
 gi|17380372|sp|O54246|FLIM_RHIME RecName: Full=Flagellar motor switch protein FliM
 gi|15073583|emb|CAC45225.1| Flagellar motor switch transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|306895317|gb|EFN26072.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti AK83]
          Length = 315

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 158/312 (50%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   N       L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y  
Sbjct: 4   STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            ++G  + +I +  +  +    SL +W ++F +GC + ++I L+E LLGA   +I +   
Sbjct: 64  FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           RSLS +E  +A      I+ VL   ++      P +   Y+     K    L + F  +I
Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M + +  V S+F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ 
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           RI L+  TL  +  L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D  
Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303

Query: 305 NFDQKSLKNFLH 316
             +Q  L++ + 
Sbjct: 304 GSEQDILRHIMS 315


>gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 342

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 102/283 (36%), Gaps = 7/283 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K   +    +   + + L   F   +   V +   S +   +   I S  +  V     +
Sbjct: 50  KDQLRAIQMIHEFFSRQLTTAFSSFVRTMVSVEVASVEQLSYDEFIKSLVQPTVIVVMEM 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              SSN  +  +  LV  +++ +LG + +T  +   R L+ +E+ + +R + ++  +L +
Sbjct: 110 YPLSSNALLEINPRLVFAIIDRMLGGAGKTTYK--ARELTDIERTVTERVVMRMLELLEE 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             +T  +    +++              +++ V  I + + I +V     + IP   +  
Sbjct: 168 SWATIVDLRFRIQN--MESNPYFAQICPASDVVVVITLQVKIGDVDGFINICIPYFAIEP 225

Query: 209 TTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                       +    + +   +    +  ++ V +   I      LKD++ L++G VI
Sbjct: 226 VIDQLSSQRWFVSTGSREDDASQERIIERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVI 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                      +    +  +    G     ++++I      ++
Sbjct: 286 KLEETYSEPVKVRVGERVKFLGHAGIYNNKHSVQIIKTFISEK 328


>gi|15596640|ref|NP_250134.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1]
 gi|107100877|ref|ZP_01364795.1| hypothetical protein PaerPA_01001907 [Pseudomonas aeruginosa PACS2]
 gi|116049388|ref|YP_791809.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892684|ref|YP_002441553.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58]
 gi|254234542|ref|ZP_04927865.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719]
 gi|254239793|ref|ZP_04933115.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192]
 gi|296390190|ref|ZP_06879665.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAb1]
 gi|313106442|ref|ZP_07792673.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016]
 gi|12230925|sp|Q51465|FLIM_PSEAE RecName: Full=Flagellar motor switch protein FliM
 gi|9947394|gb|AAG04832.1|AE004574_3 flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1]
 gi|115584609|gb|ABJ10624.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166473|gb|EAZ51984.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719]
 gi|126193171|gb|EAZ57234.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192]
 gi|218772912|emb|CAW28724.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58]
 gi|310879175|gb|EFQ37769.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016]
          Length = 323

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 95/304 (31%), Gaps = 12/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++   +          R+                +   + ++        +    D++  
Sbjct: 29  EATPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVG 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             Q  KF   +HS       +   +              LV  L++N  G       ++ 
Sbjct: 83  GVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIE 141

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E ++ +  + Q    L +      E +   E                +E V  
Sbjct: 142 GREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMN--FEYVNSEVNPAMANIVSPSEVVVV 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
              ++ ++       + +P   +     +  +  Q+  ++Q E  I         + V +
Sbjct: 200 STFHIELDGGGGDLHITMPYSMIEPIREMLDAGFQSDHDDQDERWIKALREDVLDVQVPL 259

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +  ++  L+D++ ++ G VIP         ++ ANG   +  +LG    N  ++I +
Sbjct: 260 GATVVRRQLKLRDILHMQPGDVIPVEMP--EHMVMRANGVPAFKVKLGAHKGNLALQILE 317

Query: 303 RINF 306
            +  
Sbjct: 318 AVER 321


>gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88]
 gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88]
          Length = 332

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 97/285 (34%), Gaps = 6/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   Y + +       M  ++     S Q   +   IHS     V +   
Sbjct: 48  SKDHIRTLELIHDNYARIMSNYLTAHMRKNIKAKIESVQQITYEEFIHSIPNPTVLTVFK 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
               +       +   V  +++ LLG + E   +   R  + ++K + K+    +   + 
Sbjct: 108 APPLNGTVLFETNPKFVFEVMDVLLGGNAEG-REYKLREFTDIDKNIIKQVNEGLIEGIK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                  E  P +E          N     NE V  I  ++ +   ++   + IP  ++ 
Sbjct: 167 LAWEDILELYPEIESIET--NPALNQTLAPNEPVALITFSVDMGKSSTFINICIPYLSIE 224

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           K           Q  +E   E+       +   +   +   +   K T+++ + L +G V
Sbjct: 225 KILDKLVIQYWFQENNEAVREESNKQLRDRINIVETELVAVLGGAKITVEEFLRLSLGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +   ++      ++   +     + G V KN  I+I D ++ D +
Sbjct: 285 LILDNQIDKPISINVENQLYAYGKPGVVDKNMGIQILDILDKDVE 329


>gi|327481259|gb|AEA84569.1| flagellar motor switch protein FliM [Pseudomonas stutzeri DSM 4166]
          Length = 323

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 93/275 (33%), Gaps = 6/275 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D+S    Q  KF   +HS       +   +  
Sbjct: 50  RMPTLEMINERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 109

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                       LV  L++N  G       ++  R  +  E ++ +  + Q  A L +  
Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAW 168

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
               + +   E                +E V     ++ +++      + +P   +    
Sbjct: 169 HAVLDVN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIR 226

Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+   +Q E  +         +NV +   +  ++  L+D++ ++ G VIP   
Sbjct: 227 EMLDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEM 286

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            E    I+ ANG   +  +LG    N  +++ + +
Sbjct: 287 PED--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 319


>gi|88800464|ref|ZP_01116028.1| flagellar motor switch protein FliM [Reinekea sp. MED297]
 gi|88776794|gb|EAR08005.1| flagellar motor switch protein FliM [Reinekea sp. MED297]
          Length = 360

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 98/315 (31%), Gaps = 12/315 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
            +  +           R+                +   + ++        +    D++  
Sbjct: 27  GADAEGVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNFLRRSADVATG 80

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             Q  KF   +H+       +   +              LV  L++N  G       ++ 
Sbjct: 81  GIQILKFGEYVHTLYVPTSLNLVKVRPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIE 139

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E ++ +  ++Q+   + +      +     E                +E V  
Sbjct: 140 GREFTPTEIRVVQMILSQVFQDMKEAWGAVLDVD--FEYMSSEVNPAMANIVSPSEVVVV 197

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
              ++ ++       + +P   +     +  +  Q+  +   E  ++          V  
Sbjct: 198 STFHIELDGGGGDLHMTLPYSMIEPVRDVLDAGVQSDVDEIDERWVESLRHDILGAKVPT 257

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +  +  ++  L+++V L+ G VIP           +ANG  ++  +LG+ G N  +R+  
Sbjct: 258 NAVVAEREIKLRELVDLQAGDVIPIDLP--ETIKFTANGIPLFETKLGQCGDNLALRVER 315

Query: 303 RINFDQKSLKNFLHK 317
            +    + + +   +
Sbjct: 316 PVRKMSRDIGDMKTR 330


>gi|307311548|ref|ZP_07591189.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti BL225C]
 gi|306899565|gb|EFN30194.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti BL225C]
          Length = 315

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 158/312 (50%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   N       L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y  
Sbjct: 4   STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            ++G  + +I +  +  +    SL +W ++F +GC + ++I L+E LLGA   +I +   
Sbjct: 64  FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           RSLS +E  +A      I+ VL   ++      P +   Y+     K    L + F  +I
Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERGKPDPVLQDVFAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M + +  V S+F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ 
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           RI L+  TL  +  L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D  
Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303

Query: 305 NFDQKSLKNFLH 316
             +Q  L++ + 
Sbjct: 304 GSEQDILRHIMS 315


>gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
           27405]
 gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           2360]
 gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
 gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
           27405]
 gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           2360]
 gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
 gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           1313]
          Length = 328

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 92/294 (31%), Gaps = 7/294 (2%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
                     K   +  + +   Y + +       +   V +   S +   +    +S  
Sbjct: 39  HDFRRPSKFAKDHVRTLNVIHDNYARIITNFLSGYLRTLVQVEVISVEPIAYYEFNNSIS 98

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
              V +    +  + +  +  +  +   L++ +LG     I ++  R  + VE  + +R 
Sbjct: 99  NPAVLAVIDFAPLTGSIILEMAPPVAYALIDRILGGKGLPIERV--REFTEVEIAIIERI 156

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
           I Q+  ++ +      E  P LE        +      +NE V  I +   I  V     
Sbjct: 157 IIQLVNLMREPWENVVELKPRLEKIET--NAQFAQIVSANETVALITLGAKIGEVEGMIN 214

Query: 199 LIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
           L IP   +              +  +  +++  +   +K     V +   +      + D
Sbjct: 215 LCIPHIVVEPIVSKLNTKFWFSSVEKEATKEDKETIQKKIEYTKVPVRAILGRATIQVAD 274

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            + L+ G VI           +       +    G       I+IT+ I  + +
Sbjct: 275 FLELQPGDVITLDSNVNGNLDVLVGDLLKFRGSPGVKKNRNAIKITEVIRREDE 328


>gi|188588470|ref|YP_001920165.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251780168|ref|ZP_04823088.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188498751|gb|ACD51887.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243084483|gb|EES50373.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 331

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 105/314 (33%), Gaps = 11/314 (3%)

Query: 1   MRGQSIHKNTSPLHPIL----LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL 56
           +    +   T P         L          K   +    +   + +        ++  
Sbjct: 17  LSTGELEPETVPKDDEKHKIKLYDFKSPQKFSKDHIRTLELIHDNFARITSNYLTGQIRK 76

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V +   + +   +   IHS +   + +   +   + +     +  L   +++ LLG S 
Sbjct: 77  NVKVKIETVEQITYEEFIHSVQNPTIITIFKMPPLTGSIIFETNPQLSFQIIDILLGGSG 136

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
           +   ++ N+  S ++K + ++    + + L          SP +E          N    
Sbjct: 137 DR--KIGNKEFSDIDKNIIRQVTTGMISNLKLAWEDILNVSPEVEGIET--NPAINQTLA 192

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFAR 233
            NE V  I  ++     ++   + IP  ++ K           QN  E    +       
Sbjct: 193 PNEPVALITFSVEFGEHSTFMNMCIPYLSIEKVLDKLVVQYWFQNDDEALIAESRVKMEE 252

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
              ++++ +   +      + D + L  G +I   ++  +   +    +E Y  + G  G
Sbjct: 253 GIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYVGDEECYYAKPGVTG 312

Query: 294 KNYTIRITDRINFD 307
           KN  + I D I+ +
Sbjct: 313 KNMGVAILDIIDKE 326


>gi|307945662|ref|ZP_07660998.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4]
 gi|307771535|gb|EFO30760.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4]
          Length = 410

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 98/303 (32%), Gaps = 4/303 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           ++T       +  L            +   +     +      +     +V++S  S  S
Sbjct: 92  EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 151

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL-GASHETIPQLYNRS 126
            +F   ++S     +        W     I   ++L+ ++++ LL G    T  ++  R 
Sbjct: 152 VRFGDYLNSIPLPAILGVFKAEEWDGFGMITVESSLIYSIIDVLLGGGRGATAVRVEGRP 211

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +T+E  L ++ ++ I     Q  +        +E        +             + +
Sbjct: 212 YTTIETNLVQQMVSLILQDAEQAFAPLSPVHFTMERLET--NPRFAAISRPANAAILVEL 269

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +E+   +  +++P  TL     + L     +   +        A + +   V +D  
Sbjct: 270 RIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLATEVHAAEVEVDAV 329

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +      L  V+ L +GQ + F         L      +    +G+      I++T  + 
Sbjct: 330 LYETHLPLGRVMNLDVGQTLVFDIEPTDPVTLKCGNVPLTEGTMGKAEDAIAIQVTKNLR 389

Query: 306 FDQ 308
             +
Sbjct: 390 KPK 392


>gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM
           1740]
 gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes]
          Length = 354

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 98/304 (32%), Gaps = 6/304 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
           + L          K   +    +     + L       M   V+I   S     +   + 
Sbjct: 37  VTLYDFKRPNRVSKEQLRAFRGIHDKMARNLSSQISAIMRSIVEIQLHSVDQMTYGEFLM 96

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           S      F+  S+        +  + ++   +++ LLG   +       R  S +E  L 
Sbjct: 97  SLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYE--ATREFSDIELNLL 154

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
              + Q+   L +  +   E  P+++       +        NE V  + M + I + + 
Sbjct: 155 DTILRQMMQNLKEAWAPVAEIFPSVDAKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSG 212

Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
              L  P  +L        S        +  +              VNI   +      L
Sbjct: 213 MMNLCYPVISLESVLSRLASRDLMLSETSSKKSRNRELQALLGGAAVNISAVLGGTSLDL 272

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           K+V+ L +G ++          I++ +G+E Y   +G      T++I + I  ++  +K 
Sbjct: 273 KEVLELGVGDIVRLDRPADDTVIVNVDGREKYIATIGLQRYRKTVKIKEVIKTEKDQVKE 332

Query: 314 FLHK 317
            L  
Sbjct: 333 ILEM 336


>gi|90021820|ref|YP_527647.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40]
 gi|89951420|gb|ABD81435.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40]
          Length = 333

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 100/299 (33%), Gaps = 12/299 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                      R+                +   + ++        +    D+S    Q  
Sbjct: 32  GVRAYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRTADVSVGGIQIQ 85

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +H+       +            I     LV  L++N  G       ++  R  +
Sbjct: 86  KFGEYVHTLYVPTSLNMVKFRPLRGTALIILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 144

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++ +  + Q+   L +     +      E                +E V     ++
Sbjct: 145 PTELRVVQMVLEQVFIDLKEAWKAVKAID--FEYINSEVNPSMANIVSPSEVVVVSTFHV 202

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++       + +P   +     +  +  Q+ ++ + +  +        +  V+++  + 
Sbjct: 203 ELDGGGGELHITMPYSMVEPIREVLDAGLQSDTDERDDRWVRALQEDVMEARVDLEADLV 262

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            ++ TL+D+V L+ G +IP    E    IL+ANG  ++  +LG++  N  +RI   ++ 
Sbjct: 263 RREVTLRDIVDLREGDIIPITMPEYN--ILTANGVPMFKTQLGQLNDNLAMRILGFVDR 319


>gi|86750893|ref|YP_487389.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           HaA2]
 gi|86573921|gb|ABD08478.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           HaA2]
          Length = 401

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 105/295 (35%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +FS  
Sbjct: 88  ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDY 147

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V        W +       ++L+ ++++ LLG    +   ++  R  +T+E 
Sbjct: 148 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAAIRIEGRPYTTIET 207

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR +  + A   Q        + +++        +             + +++ +E+
Sbjct: 208 NLVKRLLEVVLADAEQAFRPLSPVAFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 265

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + +     +   + +      A +  Q ++++D  +   + 
Sbjct: 266 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEIGQADISVDAVLYEAEV 325

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            L+ ++ L++G  +P   R      +      +    +GRVG    IR+T  +  
Sbjct: 326 PLRQLMALQVGDTLPLDLRADALVAVRCGSVTLTEGRMGRVGDRVAIRVTKPLRK 380


>gi|304316897|ref|YP_003852042.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778399|gb|ADL68958.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 329

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 94/310 (30%), Gaps = 11/310 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++         P       +        K   +    +     +         +   V +
Sbjct: 27  IKESQQETRIKPYDFRRPNKF------SKEQLRTLQMIFENMSRSFTTFLSGYLRTLVQV 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S  S +   +    +S       +            +  +NN   T+++ +LG       
Sbjct: 81  SIVSVEQITYYEFSNSLTNPVFIAVIDAKPLDGPIILEFNNNTTFTIIDKILGGIGTADT 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               R  + +E  L  R   Q+  ++        E +P +         + +     NE 
Sbjct: 141 V--ERDYTEIEMGLLSRITTQLLPLIKDAWINVIELNPEITRIET--NSQFSQIISPNET 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLN 239
           +    M++ I +        +P  T++    +  +    S  + +   I     K     
Sbjct: 197 IALCTMSLKINDNEGLINFCLPHITIVPILPLLTTKTWFSNAEKQSCDIGIIKDKISNTY 256

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   I + K T++D++    G ++    + K    +  N +  +    G   K Y ++
Sbjct: 257 IPLKAVIGMSKITVRDLLNFNKGDILEINKKYKDPIEIKINDETKFLGVPGIKNKKYCVQ 316

Query: 300 ITDRINFDQK 309
           IT+  +    
Sbjct: 317 ITEICSEGDD 326


>gi|39936958|ref|NP_949234.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           CGA009]
 gi|192292786|ref|YP_001993391.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           TIE-1]
 gi|39650815|emb|CAE29338.1| possible flagellar motor switch protein FliM [Rhodopseudomonas
           palustris CGA009]
 gi|192286535|gb|ACF02916.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           TIE-1]
          Length = 400

 Score =  224 bits (572), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 104/295 (35%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +F   
Sbjct: 87  ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V        W +       ++L+ ++++ LLG    +   ++  R  +T+E 
Sbjct: 147 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAALRIEGRPYTTIET 206

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR +  + A   Q        S +++        +             + +++ +E+
Sbjct: 207 NLVKRLLEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 264

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + +     +   + +      A +  Q ++++D  +   + 
Sbjct: 265 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEIVQADISVDAVLYEAEL 324

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            L+ ++ L++G  +P   R      +      +    +GRVG    IR+T  +  
Sbjct: 325 PLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEGRMGRVGDRVAIRVTKPLRK 379


>gi|237753388|ref|ZP_04583868.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375655|gb|EEO25746.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 352

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 96/292 (32%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       M   V+I   S     +   + S      F+  S
Sbjct: 50  SKEQLRAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +  + ++   +++ LLG   +       R  S +E  L    + Q+   L 
Sbjct: 110 MKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYEST--REFSDIELNLLDTILRQMMQNLK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +   E  P ++       +        NE V  + M + I + +    L  P  +L 
Sbjct: 168 EAWAPITEIFPTVDVKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLE 225

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  S        +  +              VN+   +   K ++ +++ L++G ++
Sbjct: 226 SVLSRLASRDIMLSETSAKKSRNKELQALLGGAKVNVAAVLGETKLSMHEILDLEVGDIV 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                     I++ +G+E +   +G      TI + + I  ++  +K  L  
Sbjct: 286 RLDRPADDTVIINVDGREKFLASIGLHRYRKTIEVKEMIKTEKDQVKEILEM 337


>gi|170747253|ref|YP_001753513.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653775|gb|ACB22830.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
           JCM 2831]
          Length = 404

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 101/285 (35%), Gaps = 4/285 (1%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
               +   +     + L    +     +V+++  +  S +F   +++     +       
Sbjct: 110 ERLPMLEIVFDRMIRLLSTSLRNLFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFRAE 169

Query: 90  SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            W ++  +   +NL     + LLG     +  +L  R  + +E  L +R +  +   L  
Sbjct: 170 QWENSGLVTVDSNLAYATFDLLLGGKRGGSSSRLDGRPFTAIEMTLVRRLVEIVLGDLEM 229

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                   S  ++        +  T          I++ + ++       ++ P  T+  
Sbjct: 230 SFQPLSPVSFGIDRIET--NPRFATITRPGNAAILISLRLDVDGRGGMLQILFPYATIEP 287

Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              +   S   +   +        A + +Q +V +D  ++     LK V++LK+G+ + F
Sbjct: 288 IRELLTQSFMGEKLGRDHVWEGHLATEIWQADVTMDAVLHEMMLPLKQVMSLKVGETLMF 347

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             +      +      +    +GRV  +  +++T  +   + +++
Sbjct: 348 DAKPSDLITVRCGDWALTQGRIGRVDGHIAVQVTRPLRRSRTTIQ 392


>gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
           98-5489]
 gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
           98-5489]
          Length = 352

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 99/304 (32%), Gaps = 6/304 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
           + L          K   +    +     + L       M   V+I   S     +   + 
Sbjct: 38  VTLYDFKRPNRVSKEQLRAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLM 97

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           S      F+  S+        +  + ++   +++ LLG   +       R  S +E  L 
Sbjct: 98  SLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYEST--REFSDIELNLL 155

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
              + Q+   L +  +   E  PN++       +        NE V  + M + I + + 
Sbjct: 156 DTILRQMMQNLKEAWAPITEIFPNVDVKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSG 213

Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
              L  P  +L        S        +  +              VN+   +   K TL
Sbjct: 214 MMNLCYPVISLESVLSRLASRDIMLSETSSKKSRNKELQALLGGAKVNVTAMLGETKLTL 273

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           ++++ L+ G ++          I++ +G+E +   +G      TI + + I  ++  +K 
Sbjct: 274 REILELESGDIVRLDRPADDTVIINVDGREKFLASIGLHRYRKTIEVKEMIKTEKDQVKE 333

Query: 314 FLHK 317
            L  
Sbjct: 334 ILEM 337


>gi|331006682|ref|ZP_08329960.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC1989]
 gi|330419514|gb|EGG93902.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC1989]
          Length = 340

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 99/308 (32%), Gaps = 12/308 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
            G +     S        R+                +   + ++        +    D+S
Sbjct: 25  SGDTSAGGVSSYDLTTQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRTADVS 78

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
                  KF   +H+       +            +     LV  L++N  G       +
Sbjct: 79  VGGINIQKFGEYVHTLYVPTSLNMVKFRPLRGTALVVFDAKLVFKLVDNFFGGDGR-HAK 137

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E ++ +  + Q    + +            E                +E V
Sbjct: 138 IEGREFTPTELRVVRMVLEQAFIDMKEAWRAVLPID--FEHVNSEVNPSMANIVSPSEVV 195

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
              + ++ ++       + IP   +     +  +  Q+ S+ + +  ++       Q NV
Sbjct: 196 VVSSFHVELDGGGGEMHITIPYSMIEPIREMLDAGLQSDSDERDDRWVNSLREDIMQANV 255

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +DT     K  LKD+V LK G VIP         I +ANG  ++  ++G+   N+ +++
Sbjct: 256 RLDTNFVQSKILLKDIVDLKEGDVIPIELP--EEYITNANGVPMFKVDIGQSNGNFALKV 313

Query: 301 TDRINFDQ 308
            + I   +
Sbjct: 314 NEVIERTK 321


>gi|254504876|ref|ZP_05117027.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11]
 gi|222440947|gb|EEE47626.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11]
          Length = 412

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 101/303 (33%), Gaps = 4/303 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           ++T       +  L            +   +     +      +     +V++S  S  S
Sbjct: 95  EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 154

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL-GASHETIPQLYNRS 126
            +F   ++S     +     +  W     I   ++L+ ++++ LL G    T  ++  R 
Sbjct: 155 VRFGDYLNSIPLPAILGVFKVEEWDGFGLITVESSLIYSIIDVLLGGGRGTTAARVEGRP 214

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +T+E  L ++ +  I     Q  +       NLE        +             + +
Sbjct: 215 YTTIETNLVQQMVQLILQDAEQAFAPLSPVHFNLERLET--NPRFAAISRPANAAILVEL 272

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +E+   +  +++P  TL     + L     +   +        A + +   + +D  
Sbjct: 273 RIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLATEIHAAEIEVDAV 332

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +      L  V++L +GQ + F        ++      +    LG+   +  IR+   + 
Sbjct: 333 LYETYLPLGRVLSLDVGQTLVFDVAPTDPVLVKCGNIPLTEGTLGKTEDSIAIRVAKNLR 392

Query: 306 FDQ 308
             +
Sbjct: 393 KPK 395


>gi|316932826|ref|YP_004107808.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           DX-1]
 gi|315600540|gb|ADU43075.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           DX-1]
          Length = 400

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 104/295 (35%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +F   
Sbjct: 87  ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V        W +       ++L+ ++++ LLG    +   ++  R  +T+E 
Sbjct: 147 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAALRIEGRPYTTIET 206

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR +  + A   Q        S +++        +             + +++ +E+
Sbjct: 207 NLVKRLLEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 264

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + +     +   + +      A +  Q ++++D  +   + 
Sbjct: 265 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEIVQADISVDAVLYEAEL 324

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            L+ ++ L++G  +P   R      +      +    +GRVG    IR+T  +  
Sbjct: 325 PLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEGRMGRVGDRVAIRVTKPLRR 379


>gi|188582489|ref|YP_001925934.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
 gi|179345987|gb|ACB81399.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
          Length = 405

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 97/285 (34%), Gaps = 4/285 (1%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
               +   +     + L    +     +V+++  +  S +F   +++     +       
Sbjct: 111 ERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKAD 170

Query: 90  SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           SW  +  +     L  + ++ LLG     +  +L  R  +T+E  L +R +  I   L  
Sbjct: 171 SWEGSGLVTVEQTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLEM 230

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                      ++        +  T          I + + ++       ++ P  T+  
Sbjct: 231 SFQPLSPVRFGIDRIET--NPRFATITRPGNAAILITLKLDMDGRGGGMQILFPYATVEP 288

Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              +   S   +   + +      A + +Q +V ++  ++     LK V+ LK+G  + F
Sbjct: 289 IRDLLMQSFMGERLGRDQVWESHLATEIWQADVEMEAVLHEVTLPLKRVLNLKVGDTLMF 348

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             +      +      +    +GR+     +++   +   + +L+
Sbjct: 349 DRKPSDLITVRCGDWALTQGRIGRIDDAIAVQVARPLRQSRTTLQ 393


>gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM
           1251]
 gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
           switch protein FliM [Sulfurimonas denitrificans DSM
           1251]
          Length = 372

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 101/303 (33%), Gaps = 6/303 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
           + L          K   +    +     + L       M   V+I   S     +   + 
Sbjct: 41  VTLYDFKRPNRVSKEQLRAFKGIHDKMARSLSSQISSIMRSIVEIQLHSVDQMTYGEFLM 100

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           S      F+  S+     +  I  + ++   +L+ LLG   E      +R  S +E  L 
Sbjct: 101 SLPNPTSFNVFSMKPLEGSGVIEINPSIAFPMLDRLLGGKGEPFD--ASREFSDIELSLF 158

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +  +  + + L        E  PN+E       +        NE V  + M + I   + 
Sbjct: 159 ETILRVMMSTLKDAWGPVMEIFPNIESKESSPNV--VQIVAQNEIVVMVVMEIIIGQSSG 216

Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
              +  P   L        S        +  +              V I+  +   + TL
Sbjct: 217 MMNICYPVIALEPVLPKLASRDLMLNETSTKKSRNTELHVLLGGAKVGIEAMLGNAELTL 276

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           +DV+ L+ G ++           +  +GK+ +  ++G      ++++T+ I+ ++ ++K 
Sbjct: 277 RDVLDLQAGDIVRLTSPADDIVTICVDGKDRFRGKIGLRRFRKSVQVTEIIDTERDAVKR 336

Query: 314 FLH 316
            L 
Sbjct: 337 ALE 339


>gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
           4359]
 gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
           4359]
          Length = 328

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 99/301 (32%), Gaps = 15/301 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +   K   P      ++        K   +    +   + + L      ++   VD+   
Sbjct: 30  EEGEKKVKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI- 82

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S     +   I S          +   +  +       +L  T+L+ ++G          
Sbjct: 83  SIDQLTYEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTILDIIMGGPG---DNPP 139

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
           NR+ + +E  + +R +  I  +L Q  S  Q   P++E+       +       NE V  
Sbjct: 140 NRTPTDIETSIMRREVTNILTLLAQAWSDFQYFIPSIENIET--NPQFVQIVPPNEIVLL 197

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNV 240
           +  +++     S   +  P   L               +   + E+ ++     +  + +
Sbjct: 198 VTASVSWGEFTSFINVCWPFSLLEPFLEKLSNRFWMMGRKPERIEERVEELKVASQSVPL 257

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   I     TL++V+ L+ G VI      K    +   GK  +    G+    Y ++I
Sbjct: 258 TVQAVIGEAWLTLREVLNLQEGDVIRLNTHYKDEIRIDVEGKPKFRGIPGKYKGKYAVKI 317

Query: 301 T 301
           T
Sbjct: 318 T 318


>gi|258511384|ref|YP_003184818.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478110|gb|ACV58429.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 331

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 101/314 (32%), Gaps = 18/314 (5%)

Query: 10  TSPLHPILLAR-----------LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
           T  + P    R               +   K   ++   +   + + L      ++    
Sbjct: 19  TGEIDPAAEQRANAHPRVRVYDFRRAMRFSKDHLRVLRRMHEHFCRLLTSQLSGQLRSVP 78

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
            I   S     +   I S     V     +        +  +  +V  +L+  +G     
Sbjct: 79  QIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLEGRMVMEMNPQVVFAMLDKYMGGDSAG 138

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R L+ +E  L +R    + ++L +   +  +  P           +       N
Sbjct: 139 PYRV--RELTDIEVSLFRRLFENVPSILAEAWKSVIDLDPQFVSLE--SNPQFLQLTTPN 194

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLI-DPFARKT 235
           E V  + +++ +        L IP  T+        +    + +       + D    K 
Sbjct: 195 ETVLVVTISVRVGETTGLINLCIPHVTIEPVLSKLSNRYYMDPAFQSGRRQVNDELRAKL 254

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V++   +   + T+++V+ L  G  I      +  A++  +G+  +   +G+  + 
Sbjct: 255 LSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSVGKRNRV 314

Query: 296 YTIRITDRINFDQK 309
           Y ++I  +   D  
Sbjct: 315 YAVKIVGQWEADAD 328


>gi|296103632|ref|YP_003613778.1| Flagellar motor switch protein fliM [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058091|gb|ADF62829.1| Flagellar motor switch protein fliM [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 330

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 10/301 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                P  P    R+       +        +   + +         +    DI+  + +
Sbjct: 31  DAGIKPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAGNIK 84

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
              +     +       +   L+       +  S  LV   ++NL G       +   R 
Sbjct: 85  IQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGLVFMAVDNLFGGDGRFPTKADGRE 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E+++  R ++          S+  +          I     N     N+ V T   
Sbjct: 145 FTPTEQRVIHRMLSMAREAYEFAWSSIYKIKTEYIRSE-IQVKFTNITSSPNDVVVTTPF 203

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++ I +    F + IP  T+     +  +   + S ++        A +  +  + +  R
Sbjct: 204 SVEIGSHRGEFNICIPFSTIEPLRELLSNPPMDNSRHEDSHWRGLLASQMRETELELTAR 263

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                T L  V+ +K G +I      +     S  G  +++   G V   Y +++   I 
Sbjct: 264 FADIGTRLSRVMQMKKGDIIALDK--QEFIEASVGGVPVFTARYGAVNNQYALKVEQMIQ 321

Query: 306 F 306
            
Sbjct: 322 P 322


>gi|281411906|ref|YP_003345985.1| flagellar motor switch protein FliM [Thermotoga naphthophila
           RKU-10]
 gi|281373009|gb|ADA66571.1| flagellar motor switch protein FliM [Thermotoga naphthophila
           RKU-10]
          Length = 328

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 99/297 (33%), Gaps = 15/297 (5%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K   P      ++        K   +    +   + + L      ++   VD+   S   
Sbjct: 34  KKVKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQ 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   I S          +   +  +       +L  T+L+ ++G          NR  
Sbjct: 87  LTYEEFIRSVMIPSFIVIFTGDIFEGSAIFEMRLDLFYTMLDIIMGGPG---DNPPNRPP 143

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           + +E  + ++ +  +  +L Q  S  Q   P++E+       +       NE V  +  +
Sbjct: 144 TEIETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTAS 201

Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           ++     S   +  P   L               +   + E+ I+   + + ++ V +  
Sbjct: 202 VSWGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPERVEERIEELKKASQKVPVTVQA 261

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            I   +  LK+++ L++G VI      K    +   G+  +    G     Y +++T
Sbjct: 262 VIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVT 318


>gi|91976164|ref|YP_568823.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB5]
 gi|91682620|gb|ABE38922.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB5]
          Length = 400

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 103/295 (34%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +F   
Sbjct: 87  ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V        W +       ++L+ ++++ LLG    +   ++  R  +T+E 
Sbjct: 147 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAALRIEGRPYTTIET 206

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR +  + A   Q        + +++        +             + +++ +E+
Sbjct: 207 NLVKRLLQVVLADAEQAFRPLSPVAFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 264

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + +     +   + +      A +  Q  +++D  +   + 
Sbjct: 265 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEVVQAEISVDAVLYEAEV 324

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK ++ L++G  +P   R      +      +    +GRVG    IR+T  +  
Sbjct: 325 PLKQLMALQVGDTLPLDLRADALVAVRCGSVTLTEGRMGRVGDRVAIRVTKPLRR 379


>gi|149194333|ref|ZP_01871430.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2]
 gi|149135508|gb|EDM23987.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2]
          Length = 356

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 97/304 (31%), Gaps = 6/304 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
           + L          K   +   ++     + L       M   V+I   S     +   + 
Sbjct: 39  VTLYDFKRPNRVSKEQLRSIRAIHDKMVRNLASDISSLMRSIVEIHLHSVDQMTYGEFLM 98

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           S      F+  SL        I  + ++V  +++ LLG           R  + +E  L 
Sbjct: 99  SLPSPTSFNVFSLKPLDGKGVIELNPSIVFPMIDRLLGGPGLPFENT--REFTDIELNLL 156

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
            + +  I+  + +  +   E  P +E       +        NE V  I M + I   + 
Sbjct: 157 DQILRTITQNMKEAWAPIMEMYPVIEAKESSPNV--VQIVAQNEIVVMIVMEIVIGQTSG 214

Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
              +  P  T+        S        +  +              V ++  +     T+
Sbjct: 215 MMNICYPVITIESLLPKLASRDLMLSETSSRKSRNKELRALLGGAKVELEAVLGYANLTM 274

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           ++++ L +G +I          ++  +G+E +  + G       I+I + +  +   +K 
Sbjct: 275 QEILDLVVGDIIKLNRPADDTVVVKVDGREKFIADFGIKRFRRAIKIREILKTEHDEVKE 334

Query: 314 FLHK 317
            L K
Sbjct: 335 ILSK 338


>gi|187778682|ref|ZP_02995155.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC
           15579]
 gi|187772307|gb|EDU36109.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC
           15579]
          Length = 331

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 104/309 (33%), Gaps = 13/309 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +   +   P       +        K   +    +   Y + +      ++  +V +   
Sbjct: 30  EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S Q   +   IHS     + +   +   + +     +   V  +++ LLG +     ++ 
Sbjct: 84  SVQQITYEEFIHSVPNPTILTIFKMPPLNGSVLFETNPQFVFQMIDVLLGGNGNGNYKM- 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + ++K + K+    +   L        E    +E          N      E V  
Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
           I  ++ +    +   + IP  ++ K           +   E   E+       +   +++
Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEESSSKIKERINIVSM 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     T++D + L +G V+    + +    L    +  Y  + G +GKN  ++I
Sbjct: 260 ELTAELGRTSVTVEDFLRLSVGDVVALDTKTEEPVHLLIEKEPGYYAKPGVIGKNIGLQI 319

Query: 301 TDRINFDQK 309
            D+I+ D +
Sbjct: 320 LDQIDKDVE 328


>gi|163852467|ref|YP_001640510.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           PA1]
 gi|218531223|ref|YP_002422039.1| flagellar motor switch protein FliM [Methylobacterium
           chloromethanicum CM4]
 gi|240139804|ref|YP_002964281.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           AM1]
 gi|254562219|ref|YP_003069314.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           DM4]
 gi|163664072|gb|ABY31439.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           PA1]
 gi|218523526|gb|ACK84111.1| flagellar motor switch protein FliM [Methylobacterium
           chloromethanicum CM4]
 gi|240009778|gb|ACS41004.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           AM1]
 gi|254269497|emb|CAX25463.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           DM4]
          Length = 406

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 98/285 (34%), Gaps = 4/285 (1%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
               +   +     + L    +     +V+++  +  S +F   +++     +       
Sbjct: 112 ERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKAD 171

Query: 90  SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +W  +  +     L  + ++ LLG     +  +L  R  +T+E  L +R +  I   L  
Sbjct: 172 AWEGSGLVTVEQTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLEL 231

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                      ++        +  T          I + + ++       ++ P  T+  
Sbjct: 232 SFQPLSPVRFGIDRIET--NPRFATITRPGNAAILITLKLDMDGRGGGMQILFPYATVEP 289

Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              +   S   +   + +      A + +Q +V+++  ++     LK V+ LK+G  + F
Sbjct: 290 IRDLLMQSFMGERLGRDQVWESHLATEIWQADVDMEAVLHEVTLPLKRVLNLKVGDTLMF 349

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             +      +      +    +GR+     ++I   +   + +L+
Sbjct: 350 DRKPSDLITVRCGDWALTQGRIGRIDDAIAVQIARPLRQSRTTLQ 394


>gi|254519440|ref|ZP_05131496.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA]
 gi|226913189|gb|EEH98390.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA]
          Length = 331

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 96/283 (33%), Gaps = 7/283 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   + + +      ++   V +   S +   +   +HS     + +   
Sbjct: 48  SKDHIRTLEMVHDAFARIISNYLSGQLRKHVKVDIQSVEQITYEEFVHSIANPTILTIFK 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  +      +L+ LLG + +   +   +  S ++K +     +++   L 
Sbjct: 108 MPPLQGNILLEMNPQFSFQILDILLGGTGDRDEK--AKEFSEIDKNILANITSEMIKSLI 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                  E  P  E          N     NE V  ++  + +    +   L IP  ++ 
Sbjct: 166 LAWDGILEVKPEFEGLET--NPSANQTLAPNEPVALLSFLVELGKSTTYMNLCIPYLSVE 223

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           K           +       ++  +   +    + VN+   +   + T+ D + L  G V
Sbjct: 224 KVLDKLVVQYWFKTDESELEDEAREKLKKGLDPVKVNMHVELGKTEITVDDFLELVNGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +    +      +    +E +  + G VGKN  I++ D ++ D
Sbjct: 284 LVLNSQYSDPVRVFVENEECFIAKPGIVGKNMGIQLLDILDKD 326


>gi|218288306|ref|ZP_03492605.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241665|gb|EED08838.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 331

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 101/314 (32%), Gaps = 18/314 (5%)

Query: 10  TSPLHPILLAR-----------LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
           T  + P    R               +   K   ++   +   + + L      ++    
Sbjct: 19  TGEIDPAAEQRANAHPRVRVYDFRRAMRFSKDHLRVLRRMYEHFCRLLTSQLSGQLRSVP 78

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
            I   S     +   I S     V     +        +  +  +V  +L+  +G     
Sbjct: 79  QIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLEGRMVMEMNPQVVFAMLDKYMGGDSAG 138

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R L+ +E  L +R    + ++L +   +  +  P           +       N
Sbjct: 139 PYRV--RELTDIEVSLFRRLFENVPSILAEAWKSVIDLDPQFVSLE--SNPQFLQLTTPN 194

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLI-DPFARKT 235
           E V  + +++ +        L IP  T+        +    + +       + D    K 
Sbjct: 195 ETVLVVTISVRVGETTGLINLCIPHVTIEPVLSKLSNRYYMDPAFQSGRRQVNDELRAKL 254

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V++   +   + T+++V+ L  G  I      +  A++  +G+  +   +G+  + 
Sbjct: 255 LSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSVGKRNRV 314

Query: 296 YTIRITDRINFDQK 309
           Y ++I  +   D  
Sbjct: 315 YAVKIVGQWEADAD 328


>gi|85715055|ref|ZP_01046040.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gi|85698252|gb|EAQ36124.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 400

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 102/295 (34%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S     S +F   
Sbjct: 87  DNSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     V S      W +       ++L+ ++++ LLG    +T  ++  R  +T+E 
Sbjct: 147 LNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIET 206

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L KR +  + A   Q        S +++        +             + + + +E+
Sbjct: 207 NLVKRLVEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAITRPANAAILVRLRIDMED 264

Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  L++P  T+     + L     +   +        A +  Q  + +D  +   + 
Sbjct: 265 RGGTIELLLPYATIEPIRNVLLQMFMGEKFGRDPIWESHLATEIAQAQIAVDAVLYEAEI 324

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK ++TLK+G  +    R      +      +    +GRVG    IR++  +  
Sbjct: 325 PLKQLMTLKVGDTLALEMRPDASVAVRCGSVTLTEGRMGRVGDRVAIRVSRNLRK 379


>gi|78357750|ref|YP_389199.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220155|gb|ABB39504.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 326

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 87/289 (30%), Gaps = 10/289 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+            +   +   + +         +   V+++  S    KF  
Sbjct: 38  FDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAVRKRVELNPISIDMTKFGD 91

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
            + S       +   +     N  I   + LV  L+EN  G +     ++  R  + +E+
Sbjct: 92  FMRSLPVPTSINIFKMEPLRGNAIIVVDSRLVFALVENFFGGAGSQP-KIEGREFTRIEQ 150

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            +  R I      + +      E +  L         +       ++ V  I   + +E+
Sbjct: 151 AIVDRVIKIALDNMEESWRPVHEVNLELVR--SEINPQFAAIVPPSDVVVVITFEVELES 208

Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              S V+ +P  T+         S Q +        +     +  +  V +  R    K 
Sbjct: 209 AIGSLVMCLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLLETPVEMKIRFGETKI 268

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           T   ++ LK+G V+            +  G   +    G V  N   ++
Sbjct: 269 TGNQLLRLKVGDVLLLDTDTDDLLEGTVEGVRKFWGISGIVKANKAFQV 317


>gi|315498450|ref|YP_004087254.1| flagellar motor switch protein flim [Asticcacaulis excentricus CB
           48]
 gi|315416462|gb|ADU13103.1| flagellar motor switch protein FliM [Asticcacaulis excentricus CB
           48]
          Length = 387

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 105/307 (34%), Gaps = 5/307 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 83  ERSGIRAIINSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 142

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     + +        +   +   +NL+ ++++ LLG        ++  R  +T+E+
Sbjct: 143 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIER 202

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R +  I              + NL+        +             + + + +E+
Sbjct: 203 VLVQRMVEVILHDAKMAFEPLTPVNFNLDRLET--NPRFAAIARPANAAILVKLRIDMED 260

Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     ++      +   +        A + +   + +   ++ ++ 
Sbjct: 261 RGGRVELLLPYATLEPIRKMLLQQFMGEKFGRDNIWESHLATELWTTQMEVRAVLDEQQM 320

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI-NFDQKS 310
            L +V+ LK+G+ I       +   L      + + ++GR G N  +R+   +    ++ 
Sbjct: 321 PLSEVLNLKVGETIVLNATADSPIELRCGTIPLTNGKMGRKGHNIAVRVDHPLAASTKRR 380

Query: 311 LKNFLHK 317
           L     K
Sbjct: 381 LTQIRKK 387


>gi|295097219|emb|CBK86309.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 330

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 94/304 (30%), Gaps = 10/304 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G        P  P    R+       +        +   + +         +    DI
Sbjct: 25  LHGSMGDAGIKPYDPNTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSSDI 78

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  + +   +     +       +   L+       +  S+ LV   ++NL G       
Sbjct: 79  TAGNIKIQPYHEFARNLPVPTNLNLLHLNPLRGTALMAFSSGLVFMAVDNLFGGDGRFPT 138

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +   R  +  E+++  R +            +  +          I     N     N+ 
Sbjct: 139 KADGREFTPTEQRVIHRMLTMAREAYEFAWGSIYKIKTEYIRSE-IQVKFTNITSSPNDV 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLN 239
           V T   ++ I +    F + IP  T+     +  +   + S ++  +     A +  +  
Sbjct: 198 VVTTPFSVEIGSHRGEFNICIPFSTIEPLRELLSNPPMDNSRHEDSEWRSMLASQMRETE 257

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +  +     T L +V+ +K G +IP     +     +     +++ + G V   Y ++
Sbjct: 258 LELVAQFADINTRLSNVMKMKKGDIIPLDK--QEFIEANVGSVPVFTAKYGSVNNQYALK 315

Query: 300 ITDR 303
           +   
Sbjct: 316 VDRM 319


>gi|157164910|ref|YP_001467212.1| flagellar motor switch protein FliM [Campylobacter concisus 13826]
 gi|112799933|gb|EAT97277.1| flagellar motor switch protein FliM [Campylobacter concisus 13826]
          Length = 367

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 100/303 (33%), Gaps = 6/303 (1%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           ++          K   +    +     + L       M   V++   S     +   + S
Sbjct: 40  IIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVELRLHSVDQMTYGEFLMS 99

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
                 F+  S+     N  +  + ++   +++ LLG + E      NR L+ +E  L  
Sbjct: 100 LPSPTSFNVFSIKPLDGNCILEINPSIAFPMIDRLLGGTGENFE--ANRELTDIEVNLLD 157

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
             +  I   L +  S   +  PN+E       +        NE V  + M + +   +  
Sbjct: 158 AVLRMIMQRLKESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGGSSGM 215

Query: 197 FVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
             L  P   L        +        +  +           +  V  +  +     ++ 
Sbjct: 216 INLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKSIVSVN 275

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           + + LK G ++         AI+  + KE++  E+G      +I+I   I  D+  +K+ 
Sbjct: 276 EFLNLKEGDILRLDRGADDKAIVCIDKKEVFLAEVGLHRFRKSIKIEQLIRSDKDEIKHI 335

Query: 315 LHK 317
           L K
Sbjct: 336 LEK 338


>gi|57168742|ref|ZP_00367873.1| flagellar motor switch protein FliM [Campylobacter coli RM2228]
 gi|305432516|ref|ZP_07401678.1| flagellar motor switch protein FliM [Campylobacter coli JV20]
 gi|57019789|gb|EAL56472.1| flagellar motor switch protein FliM [Campylobacter coli RM2228]
 gi|304444555|gb|EFM37206.1| flagellar motor switch protein FliM [Campylobacter coli JV20]
          Length = 358

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       M   V+    S     +   + S      F+  S
Sbjct: 49  SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + ++   +++ LLG   ++     +R L+ +E  L    +  I   L 
Sbjct: 109 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +T  E  P++E       +        NE V  + M + I N +    +  P   L 
Sbjct: 167 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 224

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +           +  V  +  +      + + + LK G ++
Sbjct: 225 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    AI+S + K+++  ++G      +I+I + I  D+  +K  L K
Sbjct: 285 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 336


>gi|259907613|ref|YP_002647969.1| flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96]
 gi|224963235|emb|CAX54719.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96]
 gi|310764881|gb|ADP09831.1| Flagellar motor switch protein FliM [Erwinia sp. Ejp617]
          Length = 332

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 90/304 (29%), Gaps = 10/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
            S+ +   P  P    R+       +        +   + +         +    DI+  
Sbjct: 30  GSVTREAQPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAG 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + +   +     +       +   L+       +  S  +V   ++NL G       +  
Sbjct: 84  NIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKAD 143

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++  R +           ST  +          I     N     N+ V T
Sbjct: 144 GREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEYIRSE-IQVKFTNITSSPNDVVVT 202

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
              ++ I +    F + IP  ++     +  +     S  +          +  +  + +
Sbjct: 203 TPFSIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELEL 262

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                   T L +V+  K G VIP           S  G  +++ + G V   + +++  
Sbjct: 263 VATFPDVPTRLTNVMKFKKGDVIPLDKP--ELIAASVGGVPVFTAKYGSVNNQFALKVEQ 320

Query: 303 RINF 306
            I  
Sbjct: 321 MIPS 324


>gi|283477455|emb|CAY73371.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae DSM 12163]
          Length = 334

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 90/304 (29%), Gaps = 10/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
            S+ +   P  P    R+       +        +   + +         +    DI+  
Sbjct: 32  GSVTREAQPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAG 85

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + +   +     +       +   L+       +  S  +V   ++NL G       +  
Sbjct: 86  NIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKAD 145

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++  R +           ST  +          I     N     N+ V T
Sbjct: 146 GREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEYIRSE-IQVKFTNITSSPNDVVVT 204

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
              ++ I +    F + IP  ++     +  +     S  +          +  +  + +
Sbjct: 205 TPFSIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELEL 264

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                   T L +V+  K G VIP           S  G  +++ + G V   + +++  
Sbjct: 265 VATFPDVPTRLTNVMKFKKGDVIPLDKP--ELIAASVGGVPVFTAKYGSVNNQFALKVEQ 322

Query: 303 RINF 306
            I  
Sbjct: 323 MIPS 326


>gi|292489155|ref|YP_003532042.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
 gi|292900273|ref|YP_003539642.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291200121|emb|CBJ47247.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291554589|emb|CBA22223.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
 gi|312173313|emb|CBX81568.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC
           BAA-2158]
          Length = 334

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 90/304 (29%), Gaps = 10/304 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
            S+ +   P  P    R+       +        +   + +         +    DI+  
Sbjct: 32  GSVAREAQPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAG 85

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + +   +     +       +   L+       +  S  +V   ++NL G       +  
Sbjct: 86  NIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKAD 145

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  +  E+++  R +           ST  +          I     N     N+ V T
Sbjct: 146 GREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEYIRSE-IQVKFTNITSSPNDVVVT 204

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
               + I +    F + IP  ++     +  +     S  +          +  +  + +
Sbjct: 205 TPFFIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELEL 264

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                   T L +V+ LK G VIP           S  G  +++ + G V   + +++  
Sbjct: 265 VATFPDLPTRLTNVMKLKKGDVIPLDKP--ELIAASVGGVPVFTAKYGSVNNQFALKVEQ 322

Query: 303 RINF 306
            I  
Sbjct: 323 MIPS 326


>gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 332

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 97/301 (32%), Gaps = 8/301 (2%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
           P  L          K   +   ++   Y + L       +   + +   S     F   +
Sbjct: 35  PYKLYDFRRPNKFSKEQLRTLQTVHEGYARILSNFLSGYLRSTIVVRVASVDQFTFDDFV 94

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            S     V +  +L        +  +   +  +++ L G   E   ++  R L+ +E  +
Sbjct: 95  RSVPIPTVLTIITLKPLKGMAVMETNPQFLFPIIDLLFGGPGEPPKRV--RELTDIELSV 152

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
            ++   ++               P +E        + +     +E V  I +   +   A
Sbjct: 153 VRKLNKKLLENFQLAWQDIYRMEPEIESVET--NPRLHQIISPSEIVAVITLTAVVGATA 210

Query: 195 -SSFVLIIPQETLLKTTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
                + +P   L    +   S     + +                +  V +   +   +
Sbjct: 211 RGLINICLPHIMLDPVLMHLSSFYRHVHGALVPDGTEGKRMEYWIERAPVELSAVVGESE 270

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            T++D++ L++G V+P   R      L  + +  +  + G +G+   +++T  +    ++
Sbjct: 271 ITVQDLLQLQVGDVVPLSRRVTQDLDLYVSDQLKFKAQAGVLGRYLAVQVTSLVEGGDRA 330

Query: 311 L 311
           +
Sbjct: 331 V 331


>gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 308

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 6/278 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K + +    +     + L       +   V I+  S     FS          +     L
Sbjct: 34  KDLIRTLVLVHENLARLLQSYLSAGLRTWVQITVRSTNQYTFSEFTQLLPNPTIALSFRL 93

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +       +  S+N+   ++E + G           R L+ +E  + +R +      + +
Sbjct: 94  NPLPGMCLLEISHNIAFAIVERVFGGPGS--DLQPQRELTEIELGIIQRVVRDTFGPMKE 151

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P +E                 E V  I + + I           P  T+  
Sbjct: 152 AWRNVAEIDPAIEAVET--NPVFIQIENPTEVVAAITLAVEIGEHLGHMTFAFPYSTVEP 209

Query: 209 T--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
               L   S   +++++S    +   R   +  + +   +   +  L + + L++G VI 
Sbjct: 210 VLSRLSPQSWLAETKHKSPSDEESLRRAVQEAPLPVKALLGKTRMRLGEFLALQVGDVIR 269

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
              R      +    K  +  + G VG+   ++IT R+
Sbjct: 270 LDARVGGELPVFVGNKLAFQAKPGVVGERMAVQITRRV 307


>gi|153951200|ref|YP_001397325.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938646|gb|ABS43387.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 359

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       M   V+    S     +   + S      F+  S
Sbjct: 50  SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + ++   +++ LLG   ++     +R L+ +E  L    +  I   L 
Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +T  E  P++E       +        NE V  + M + I N +    +  P   L 
Sbjct: 168 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 225

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +           +  V  +  +      + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    AI+S + K+++  ++G      +I+I + I  D+  +K  L K
Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337


>gi|260772330|ref|ZP_05881246.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP
           69.14]
 gi|260611469|gb|EEX36672.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP
           69.14]
          Length = 281

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 84/257 (32%), Gaps = 5/257 (1%)

Query: 53  KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112
            +    ++S    Q  KF    ++       +            +     LV  L+EN  
Sbjct: 1   MLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFF 60

Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
           G       ++  R  +  E+++ +  +  + A   +  S         E           
Sbjct: 61  GGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMA 118

Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPF 231
                 E +   + ++ ++     F +++P   +     +  +  Q+             
Sbjct: 119 NIVSPTEVIVVCSFHIEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSSAL 178

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +   + +N    +  +   L+D++ L++G +IP        AI+       Y  ++GR
Sbjct: 179 RDEIMDVPINFRVNLLEQDIALRDLMDLQVGDIIPIKMP--EHAIMFVEELPTYRVKMGR 236

Query: 292 VGKNYTIRITDRINFDQ 308
            G    ++I+ +I   +
Sbjct: 237 SGDKLAVQISQKIKRPE 253


>gi|57237070|ref|YP_178082.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221]
 gi|86149575|ref|ZP_01067805.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86151492|ref|ZP_01069707.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86154028|ref|ZP_01072229.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88597737|ref|ZP_01100970.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|121613064|ref|YP_999786.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|148926866|ref|ZP_01810544.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157414374|ref|YP_001481630.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|167004761|ref|ZP_02270519.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|205356443|ref|ZP_03223207.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218561745|ref|YP_002343524.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|283955504|ref|ZP_06372999.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|315123665|ref|YP_004065669.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|57165874|gb|AAW34653.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221]
 gi|85839843|gb|EAQ57102.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85841839|gb|EAQ59086.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85842442|gb|EAQ59656.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87248986|gb|EAQ71948.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|88190041|gb|EAQ94017.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359451|emb|CAL34234.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|145844443|gb|EDK21551.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157385338|gb|ABV51653.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205345630|gb|EDZ32269.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|283792965|gb|EFC31739.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|284925356|gb|ADC27708.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|307747020|gb|ADN90290.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315017387|gb|ADT65480.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315057501|gb|ADT71830.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315927743|gb|EFV07070.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929164|gb|EFV08389.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931622|gb|EFV10587.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 359

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       M   V+    S     +   + S      F+  S
Sbjct: 50  SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + ++   +++ LLG   ++     +R L+ +E  L    +  I   L 
Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +T  E  P++E       +        NE V  + M + I N +    +  P   L 
Sbjct: 168 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 225

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +           +  V  +  +      + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    AI+S + K+++  ++G      +I+I + I  D+  +K  L K
Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337


>gi|302383953|ref|YP_003819776.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194581|gb|ADL02153.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 356

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 98/282 (34%), Gaps = 4/282 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
                 +   +     + +    +     +V++S  +  S +F   ++S     + +   
Sbjct: 67  SYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFR 126

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                +   +   +NL+ ++++ LLG        ++  R  +T+E+ L +R +  I A  
Sbjct: 127 AEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILADA 186

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
                       NL+        +             + + + +E+      L++P  TL
Sbjct: 187 QAAFEPLTPVHFNLDRLET--NPRFAAIARPANAAILVKLRIDMEDRGGRVELLLPYATL 244

Query: 207 LKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                ++      +   +        A + +  +  +   ++ +   L  V+ LK+G  +
Sbjct: 245 EPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTDTEVRAVLDEQSCPLSTVLNLKVGDTL 304

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                  +   +      + +  +GR G++  IR+   I+ +
Sbjct: 305 MLNATPDSDISIRCGSIPVTTGRMGRKGQHIAIRVEGPISVE 346


>gi|154253006|ref|YP_001413830.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans
           DS-1]
 gi|154156956|gb|ABS64173.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans
           DS-1]
          Length = 374

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 101/280 (36%), Gaps = 4/280 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
                 +   +     + +    +     +V++S  +  S +F   ++S     + +   
Sbjct: 63  SYERLPMLEIVFDRLVRLMTVSLRNFTSDNVEVSLDNVSSIRFGDYLNSIPLPAILAVFR 122

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
              W +       +NL+ ++++ LLG        ++  R  +T+E  L +R I  +   +
Sbjct: 123 AKQWDNYGMFTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIELNLVQRMIEVVLQDV 182

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
                     +  L+        +             + + + +E+      L++P  TL
Sbjct: 183 QSAFEPLSPVTLELDRMET--NPRFAAIARPANAAILVKLRVDMEDRGGRIELLLPYATL 240

Query: 207 LKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                + L     +   +        A + +   V ++  ++ ++ +L++V+  ++GQ +
Sbjct: 241 EPIRELLLQMFMGEKFGRDTIWESHLATELWATKVPLEAVLDEQQLSLREVMDFRVGQTL 300

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                 +    L   G  +   ++GRVG +  +R+   I 
Sbjct: 301 MLNSGPEGAIDLRCGGVRLGKGKMGRVGNHVAVRVEQAIK 340


>gi|301165893|emb|CBW25466.1| flagellar motor switch protein FliM [Bacteriovorax marinus SJ]
          Length = 343

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 89/296 (30%), Gaps = 9/296 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           N          R+            I   +   + +         +     IS  S    
Sbjct: 43  NIQAYDLTNQDRVIRG------RMPILEIISERFIRSFRVSLSNSLRKISTISMISTDLL 96

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +++            +       +   + L   ++++  G +     ++  +  +
Sbjct: 97  KFGEFVNTLPIPSCMCIMRFNELRGPALLVFESKLAYAIIDSYFGGTDRPFTKIEGKEFT 156

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E    K+ +      L +  +                  +       ++ +    + +
Sbjct: 157 MIELSFMKKVMDMAINDLEEAWAPVHRIDAQ--YLRTEINPQFVGVVPPSDVIIATTLEV 214

Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
             E+ + + ++++P  T+         S Q  ++               Q +  +  ++ 
Sbjct: 215 EFESASGTIMIVVPYSTIEPIKQKLSSSFQTDNDMADSIWTQAMNEHIKQAHATMVVKLG 274

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
               T+ D+VTL+ G +IP         ++   G E   C +G    N  ++IT+ 
Sbjct: 275 ETNITVGDLVTLEKGDIIPLNQEASGEVVVEVEGVEKMKCLIGTHKGNRAVQITNV 330


>gi|283955445|ref|ZP_06372943.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793072|gb|EFC31843.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           414]
          Length = 359

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       M   V+    S     +   + S      F+  S
Sbjct: 50  SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + ++   +++ LLG   ++     +R L+ +E  L    +  I   L 
Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +T  E  P++E       +        NE V  + M + I N +    +  P   L 
Sbjct: 168 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 225

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +           +  V  +  +      + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    AI+S + K+++  ++G      +I+I + I  D+  +K  L K
Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337


>gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
           YUAN-3]
 gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
           YUAN-3]
          Length = 335

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 104/305 (34%), Gaps = 15/305 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S  K   P    +  +        K   K  S +   Y + L       +     +   +
Sbjct: 31  STEKKVRPYDFKIPKKF------NKEQMKTLSIIYENYGRLLSSYLSGTLRSYCKVEVLT 84

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  +F    ++ + N +     +     +  +  S ++   +++ LLG   E      +
Sbjct: 85  IEEQRFFEYSNALESNVLMGVLDMKPLEGSSMVTLSQSVAFGIIDRLLGGPGEIYE--AD 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  + +E +L ++ +  +  ++           P+       +  +++     NE V  +
Sbjct: 143 RDYTDIEMQLLRQVVQTVCRLVGDAWENVYALQPDFVRLE--NNSRQSQLVSPNETVVIV 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-----QNKSENQSEDLIDPFARKTYQLN 239
            +++ I +V  +    IP   L        +              +   +   RK  Q+ 
Sbjct: 201 MLDVEIRDVVGNISFCIPYVILEPVLEHLNTRYWFTESRSKTGDEQASRENLLRKVRQIP 260

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   + TL + + L++G V+P        A + +  ++ +   LG    N  IR
Sbjct: 261 IELRAVLGTARITLHEALQLQVGDVVPLDQHLDEKAAVYSGKEKWFEGTLGTWHNNRAIR 320

Query: 300 ITDRI 304
           +   +
Sbjct: 321 VDRIM 325


>gi|220924581|ref|YP_002499883.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS
           2060]
 gi|219949188|gb|ACL59580.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS
           2060]
          Length = 403

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 98/281 (34%), Gaps = 4/281 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
                 +   +     + L    +     +V+++  +  S +F   +++     +     
Sbjct: 107 SYERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPMPTLLGVFK 166

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
              W ++  +   ++L    L+ LLG     T  +L  R  +++E  L +R +  I   L
Sbjct: 167 ADLWENSGLLTVDSSLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDL 226

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
                        ++        +  T          I++ + +E       ++ P  T+
Sbjct: 227 EASFQPLSPVRFQIDRIE--SNPRFATITRPANAAILIDLKLDMEGRGGLLQILFPYATI 284

Query: 207 LKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                + L S   +   +        A + +Q ++ ++  ++     L+ V++L++G  I
Sbjct: 285 EPIRDLLLQSFMGEKLGRDHVWEGHLATEIWQADLAVEAVLHEMTLPLRRVLSLEVGDTI 344

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            F  +      L      +    +GR+  +  +++T  +  
Sbjct: 345 MFDAKPTDLITLRCGDWALTQGRIGRLDDSIAVQVTRPLRR 385


>gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
 gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
          Length = 367

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 6/304 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
           +++          K   +    +     + L       M   V+I   S     +   + 
Sbjct: 37  VIIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVEIRLHSVDQMTYGEFLM 96

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           S      F+  S+     N  +  + ++   +++ LLG + E      +R L+ +E  L 
Sbjct: 97  SLPSPTSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGNGEGFE--ASRELTDIEVNLL 154

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
              +  +   L +  S   +  PN+E       +        NE V  + M + + N + 
Sbjct: 155 DAILRMMMQRLKESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGNSSG 212

Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
              +  P   L        +        +  +           +  V  +  +     ++
Sbjct: 213 MINICYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKSVVSV 272

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
            + + LK G ++         AI++ + KE++  E+G      +IRI + I  D+  +KN
Sbjct: 273 NEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGLHRFRKSIRIEELIRSDKDEIKN 332

Query: 314 FLHK 317
            L +
Sbjct: 333 ILEQ 336


>gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 332

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 111/313 (35%), Gaps = 10/313 (3%)

Query: 1   MRGQSIHKNT---SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57
           +   S+ +     S  H + L          K       ++   + + L       M   
Sbjct: 17  LSDGSVDEEAIALSNSHKVRLYDFKRPNKFSKGQLNSLRNIHENFCRNLVTYLAGAMHTV 76

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           ++    S +   +     S     +    S+     N  I  S  L   +++ LLG   +
Sbjct: 77  IEAKVLSTEQVTYDEYTRSLPYPSILGIYSMDPLEGNALIELSPGLGFHMVDRLLGGYGK 136

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
               + NR L+ +E+++ +  + ++ +V+ +  S     +P   D      ++       
Sbjct: 137 --DAMKNRDLTEIERRIVQGMLRKMISVIGEAWSEIYTITPQYVDMET--NVQFIQIVAP 192

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARK 234
           NE V  + M + IE+      + +P   +        +     +  + Q+ +      RK
Sbjct: 193 NEMVVVVTMEVKIEDSIGMINICLPYIVMKPILDKLNNILLFSSAGKAQNPEDQRTIRRK 252

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             ++ V +   +   + T+++++ L+ G VIP     +    +     + ++   G    
Sbjct: 253 IERVRVPLKVFLGQTQITVRELLGLEKGDVIPLQQHIQEPLDIYVGKFKKFAGIPGLHSN 312

Query: 295 NYTIRITDRINFD 307
              ++I+  +N +
Sbjct: 313 RLAVQISGVLNEE 325


>gi|170288054|ref|YP_001738292.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2]
 gi|170175557|gb|ACB08609.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2]
          Length = 328

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 98/295 (33%), Gaps = 15/295 (5%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
             P      ++        K   +    +   + + L      ++   VD+   S     
Sbjct: 36  VKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLT 88

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           +   I S          +   +  +       +L  T+L+ ++G          NR  + 
Sbjct: 89  YEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTMLDIIMGGPG---DNPPNRPPTE 145

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +E  + ++ +  +  +L Q  S  Q   P++E+       +       NE V  +  +++
Sbjct: 146 IETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVS 203

Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
                S   +  P   L               +   + E+ ++   + + ++ V +   I
Sbjct: 204 WGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPEKVEERMEELRKASQKIPVTVQAVI 263

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
              +  LK+++ L++G VI      K    +   G+  +    G     Y +++T
Sbjct: 264 GETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGTFKGKYAVKVT 318


>gi|170742328|ref|YP_001770983.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
 gi|168196602|gb|ACA18549.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
          Length = 403

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 4/281 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
                 +   +     + L    +     +V+++  +  S +F   +++     +     
Sbjct: 107 SYERLPMLEIIFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFK 166

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
              W ++  +   +NL    L+ LLG     T  +L  R  +++E  L +R +  I   L
Sbjct: 167 ADLWENSGLVTVDSNLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDL 226

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
                        ++        +  T          I++ + +E       ++ P  T+
Sbjct: 227 EASFQPLSPVRFQIDRLE--SNPRFATITRPANAAILIDLKLDMEGRGGLLQILFPYATI 284

Query: 207 LKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                + L S   +   +        A + +Q  V ++  ++     LK V+ L++G  I
Sbjct: 285 EPIRDLLLQSFMGEKLGRDHVWEGHLATEIWQAEVEVEAVLHQMTLPLKRVLALEVGDTI 344

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            F  +      L      +    +GR+  +  +++T  +  
Sbjct: 345 LFDAKPTDLITLRCGDWALSQGRIGRLEDSIAVQVTRPLRR 385


>gi|329888223|ref|ZP_08266821.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC
           11568]
 gi|328846779|gb|EGF96341.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC
           11568]
          Length = 352

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 102/296 (34%), Gaps = 4/296 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 49  ERSGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDTISSIRFGDY 108

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     + +        +   +   +NL+ ++++ LLG        ++  R  +T+E+
Sbjct: 109 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIER 168

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R +  I     Q          NL+        +             + + + +E+
Sbjct: 169 VLVQRMVEVILNDARQAFEPLTPVHFNLDRLET--NPRFAAIARPANAAILVKLRIDMED 226

Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     ++      +   +        A + +     +   ++ ++ 
Sbjct: 227 RGGRVELLLPYSTLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTETEVRCVLDEQQM 286

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            L  V+ LK+G  +      ++   + A    + +  +GR G++  +R+   I+ D
Sbjct: 287 PLSKVLDLKVGDTLMLNVTPESEVSVRAGSIPLTTGRMGRKGQHIAVRVEGPISTD 342


>gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
 gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
          Length = 319

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 116/303 (38%), Gaps = 4/303 (1%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           +  RL    G       +   +     + +    ++K      IS +  ++ +   ++  
Sbjct: 19  IADRLLDAAGISVDRLPMLPVVFDRMARLMADAMRQKSPSPSYISVSYVENNRIGDVLDE 78

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           F+ N + +      W +   +G   + + TL++ L GA     P    R  S +E ++A+
Sbjct: 79  FESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDDERPFSNIETRIAR 138

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
                 +  L +  +   E++  +E       +        N       +          
Sbjct: 139 TMFEVAAKALAESFAPIAETTLKIERIE--SRMDFAVVGRRNNPAVVARLLQQAIGRGGE 196

Query: 197 FVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             +++P  TL             +  ++ +     F  +  +  V ++  +  ++ +L D
Sbjct: 197 VFIVMPHSTLNPLRQRLSQVLSGEMSSRDKQWTQHFHNEIQRTEVKLEAILEEREMSLGD 256

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKNF 314
           +  L++GQVI      ++   L+ N + +++C+LG++  +YT++I + I   ++    + 
Sbjct: 257 LANLRVGQVIELQATARSPVTLACNDQPVFTCQLGQLNGSYTLQIDELIHEEEKDLFDDL 316

Query: 315 LHK 317
            ++
Sbjct: 317 RNR 319


>gi|227820849|ref|YP_002824819.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234]
 gi|227339848|gb|ACP24066.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234]
          Length = 315

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 157/312 (50%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   N       LLAR+TG LGD KTI + +  LG+++ + LP++ K++   D+ I Y  
Sbjct: 4   STDSNVYAFDKKLLARMTGALGDDKTIGRTALELGHVFSERLPEMLKQETGRDIAIGYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            + G  + +I    E  + S  SL +W + F IGC + ++I L+E LLGA    I +   
Sbjct: 64  VKMGFRNELIADLGEAVLLSDVSLRNWCAEFQIGCDSPVLIALVEALLGAEPIDIEEPLP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R+LS +E  +A     +I+  +   +       P +   ++          L + +  +I
Sbjct: 124 RALSKIEIDVAVPVFERIAEAVRMAVDAPGGFEPVVGRPHNGAERLPPDPALEDVYAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M   +  V S+F +IIPQ  LLKT ++   +  ++E+   D  +    +  +  V ++ 
Sbjct: 184 DMTFGLGPVLSTFSVIIPQNVLLKTQIVPPGNAGRNESMKTDWSEQLEEQIRRSAVTLEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           RI L+  TL  +  L+ G VIPF   +     ++ANG+++Y CE GR G  YT+R+ D  
Sbjct: 244 RIQLESLTLDTISRLQPGDVIPFHDGQDVRVEVNANGRDLYVCEFGRSGSRYTVRVKDTH 303

Query: 305 NFDQKSLKNFLH 316
             +Q  L++ + 
Sbjct: 304 GSEQDILRHIMS 315


>gi|15643443|ref|NP_228487.1| flagellar motor switch protein FliM [Thermotoga maritima MSB8]
 gi|4981202|gb|AAD35762.1|AE001740_8 flagellar motor switch protein FliM [Thermotoga maritima MSB8]
          Length = 328

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 100/295 (33%), Gaps = 15/295 (5%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
             P      ++        K   +    +   + + L      ++   VD+   S     
Sbjct: 36  VKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLT 88

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           +   I S          +   +  +       +L  T+L+ ++G   E  P   NR  + 
Sbjct: 89  YEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTE 145

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +E  + ++ +  +  +L Q  S  Q   P++E+       +       NE V  +  +++
Sbjct: 146 IETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVS 203

Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
                S   +  P   L               +   + E+ ++   + + ++ V +   I
Sbjct: 204 WGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPEKVEERMEELRKASQKIPVTVQAVI 263

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
              +  LK+++ L++G VI      K    +   G+  +    G     Y +++T
Sbjct: 264 GETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVT 318


>gi|23009967|ref|ZP_00050822.1| COG1868: Flagellar motor switch protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 316

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 98/285 (34%), Gaps = 4/285 (1%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
               +   +     + L    +     +V+++  +  S +F   +++     +       
Sbjct: 22  ERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKAD 81

Query: 90  SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            W  +  +     L  + ++ LLG     +  +L  R  +T+E  L +R I  I + L  
Sbjct: 82  PWEGSGIVTVEQTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMNLVRRLIDIILSDLEL 141

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                      ++        +  T          I++ + ++       ++ P  T+  
Sbjct: 142 SFQPLSPVRFGIDRLET--NPRFATITRPGNAAILISLKLDMDGRGGGMQILFPYATVES 199

Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              +   S   +   + +      A + +Q ++ ++  ++     LK V+ LK+G  + F
Sbjct: 200 IRDLLMQSFMGERLGRDQVWESHLATEIWQADLEMEAVLHEVTLPLKRVLGLKVGDTLMF 259

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             +      +      +    +GR+     ++I   +   + +L+
Sbjct: 260 DRKPTDLITVRCGDWALTQGRIGRIDDAIAVQIARPLRQSRTTLQ 304


>gi|78044874|ref|YP_359866.1| flagellar motor switch protein FliM [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996989|gb|ABB15888.1| flagellar motor switch protein FliM [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 335

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 96/284 (33%), Gaps = 7/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   Y + +       +  ++ +   S     +   + S     + +   
Sbjct: 53  SKENLRTLHLIHDNYARLISNFLTGYLRTNISVKVASVDQATYEDFLVSVPTPTLITTFK 112

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L     +  +  +   +  ++  L G S +  P++  R L+ +E  + K+   ++   L 
Sbjct: 113 LHPLKGSMVMETNLQFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLA 170

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           Q  +   +  P +E     +  + +     NE V  I     I        L +P E L 
Sbjct: 171 QAWAEIIKVEPEIEALE--NNPRLHQVLSPNEIVAIITFTTEILGNNGLINLCLPFEVLD 228

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                        + +    E           +  + +   +   +  +++ + +++G +
Sbjct: 229 PLLAKLSASYWFSHATAADREAFARHMEGFLAESELEVSAILGGTELRVREFLKIEVGDI 288

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +    +      L    ++++  + GRVG+    +IT  I  D+
Sbjct: 289 VVLNRKVDEELELFVEDQKLFKVQPGRVGEKLCCQITGMIERDE 332


>gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198]
 gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198]
          Length = 357

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 105/319 (32%), Gaps = 6/319 (1%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +   +  +  SP   I L          K   +    +     + L       M   V+I
Sbjct: 22  VDSSANEQGISPKRQITLYDFKRPNRVSKEQLRAFKGIHDKMARNLSSQISAIMRSIVEI 81

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
              S     +   + S      F+  S+        +  + ++V ++++ LLG   ET  
Sbjct: 82  QLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMDGTGVLEINPSIVFSMIDRLLGGKGETYD 141

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               R  S +E  L    + QI   L        E  P+++       +        NE 
Sbjct: 142 H--QREFSDIELNLLDTILRQIMQTLKDAWGPVAEIFPSVDAKESSPNV--VQIVAQNEV 197

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQL 238
           V  + M M I + +    L  P  +L        S        +  +             
Sbjct: 198 VIMVVMEMIIGHSSGMLSLCYPVISLEAVLSRLGSRDLVLSETSSKKSRNKELQALIGGA 257

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +++   +     +L++++ L+ G +I           ++ +GK+ +  ++G      TI
Sbjct: 258 GISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVAIDGKDKFLADIGLQRYRKTI 317

Query: 299 RITDRINFDQKSLKNFLHK 317
           RI + I  ++  +K  L  
Sbjct: 318 RIKEAIRTEKDQVKEILEM 336


>gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
           1]
 gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
           1]
          Length = 325

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 97/307 (31%), Gaps = 6/307 (1%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +  +  +   P+ +          K   +    +   + + L       +   V ++  S
Sbjct: 23  AEEEPQTSDTPVQVYDFRRPNKFSKDQMRTLQIVHENFARILSNFLTAYLRTPVQVTLAS 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
                F   I S     + S    S    +  +  +   V  +++ L G   +T  Q+  
Sbjct: 83  VSQVTFEEFIFSLPTPTLMSIFKASDNMGSAMLETNPQFVFPIIDLLFGGEGKTPKQI-- 140

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R L+ +E  + +R + +I   L        E SP +E+       + N    SNE V  +
Sbjct: 141 RELTEIELTVMRRIVNKILENLRYAWEDINELSPQIENMDT--NPQFNQMIASNETVALL 198

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVNI 242
            ++  I +      +  P  TL        +    + S+                ++V +
Sbjct: 199 TLSTKIRDSEGLINVCFPFITLEPVIANLTAQHWFSNSQISGGVHSRMLETGLEDVDVEL 258

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +      ++D +  + G VI    R      L    K ++  + G       ++   
Sbjct: 259 TAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEKPMFKIQAGVSKGRRAVQFLH 318

Query: 303 RINFDQK 309
               + +
Sbjct: 319 AEGGEAE 325


>gi|221235077|ref|YP_002517513.1| flagellar motor switch protein FliM [Caulobacter crescentus NA1000]
 gi|300680949|sp|B8GXB5|FLIM_CAUCN RecName: Full=Flagellar motor switch protein FliM
 gi|220964249|gb|ACL95605.1| flagellar motor switch protein fliM [Caulobacter crescentus NA1000]
          Length = 374

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 96/288 (33%), Gaps = 4/288 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 72  DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 131

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEK 132
           ++S     + +        +   +   +NL+ ++++ LLG        ++  R  +T+E+
Sbjct: 132 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 191

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R I  +   L          S +L+        +             + + + +E+
Sbjct: 192 VLVQRMIEVVLHDLKSAFEPLHPVSFSLDRLET--NPRFAAIARPANAAILVKLRIDMED 249

Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     ++      +   +        A + +   + +   ++ ++ 
Sbjct: 250 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQV 309

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
            L  V+ +++G  +       +   L A    +    +GR   +  +R
Sbjct: 310 PLSRVLNMQVGDTLMLNATPDSLVELRAGAIPLTRGRMGRRNHSIAVR 357


>gi|254418956|ref|ZP_05032680.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3]
 gi|196185133|gb|EDX80109.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3]
          Length = 346

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 98/282 (34%), Gaps = 4/282 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
                 +   +     + +    +     +V++S  +  S +F   ++S     + +   
Sbjct: 58  SYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFR 117

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                +   +   +NL+ ++++ LLG        ++  R  +T+E+ L +R +  +    
Sbjct: 118 AEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVVLNDA 177

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
                     + NL+        +             I + + +E+      L++P  TL
Sbjct: 178 RLAFEPLTPVTFNLDRLET--NPRFAAIARPANAAILIKLRIDMEDRGGRIELLLPYATL 235

Query: 207 LKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                ++      +   +        A + +     +   ++ +   L  V+ LK+G  +
Sbjct: 236 EPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTETEVRAVLDEQMMPLSTVLNLKVGDTM 295

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                  +   + A    + +  +GR G++  +RI   +N +
Sbjct: 296 MLNATPDSEVSIRAGAIPLTTGRMGRKGQHIAVRIEGPVNPE 337


>gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
 gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
          Length = 366

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 101/303 (33%), Gaps = 6/303 (1%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           ++          K   +    +     + L       M   V+I   S     +   + S
Sbjct: 40  IIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVEIRLHSVDQMTYGEFLMS 99

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
                 F+  S+     N  +  + ++   +++ LLG + E      NR L+ +E  L  
Sbjct: 100 LPSPTSFNVFSIKPLDGNCILEINPSIAFPMIDRLLGGTGENFET--NRELTDIEVNLLD 157

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
             +  I   L +  +   +  PN+E       +        NE V  + M + + N +  
Sbjct: 158 AVLRMIMQRLKESWAMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGNSSGM 215

Query: 197 FVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
             L  P   L        +        +  +           +  V  +  +     ++ 
Sbjct: 216 INLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKAIVSVS 275

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           + + LK G ++         AI+  + KE++  E+G      +I+I   I  D+  +KN 
Sbjct: 276 EFLDLKEGDIVRLDRSADDKAIVCIDKKEVFLAEVGLHRFRKSIKIEQLIRSDKDEIKNI 335

Query: 315 LHK 317
           L K
Sbjct: 336 LEK 338


>gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 252

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 89/254 (35%), Gaps = 6/254 (2%)

Query: 52  EKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENL 111
             +    D++    Q  KF   +HS       + A +              LV  L++N 
Sbjct: 1   NLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNF 60

Query: 112 LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171
            G       ++  R  +  E ++ +  + Q    L +      E +   E          
Sbjct: 61  FGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAM 117

Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDP 230
                 +E V     ++ ++       + +P   +     +  +  Q+  ++Q E  ++ 
Sbjct: 118 ANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNA 177

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  +NV + T I  ++  L+D++ ++ G VIP         ++ ANG   +  +LG
Sbjct: 178 LKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--SDSLVMRANGVPSFKVKLG 235

Query: 291 RVGKNYTIRITDRI 304
                  +++ + I
Sbjct: 236 SHKGKMALQVIEPI 249


>gi|148269397|ref|YP_001243857.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1]
 gi|147734941|gb|ABQ46281.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1]
          Length = 328

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 98/295 (33%), Gaps = 15/295 (5%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
             P      ++        K   +    +   + + L      ++   VD+   S     
Sbjct: 36  VKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLT 88

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           +   I S          +   +  +       +L  T+L+ ++G          NR  + 
Sbjct: 89  YEEFIRSVMIPSFIVIFTGDIFEGSAIFEMRLDLFYTMLDIIMGGPG---DNPPNRPPTE 145

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +E  + ++ +  +  +L Q  S  Q   P++E+       +       NE V  +  +++
Sbjct: 146 IETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVS 203

Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
                S   +  P   L               +   + E+ ++   + + ++ V +   I
Sbjct: 204 WGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPERVEERMEELKKVSQKVPVTVQAVI 263

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
              +  LK+++ L++G VI      K    +   G+  +    G     Y +++T
Sbjct: 264 GETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVT 318


>gi|150395476|ref|YP_001325943.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           medicae WSM419]
 gi|150026991|gb|ABR59108.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           medicae WSM419]
          Length = 315

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 156/311 (50%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              N       LLAR+ G LGD K I++++  L  ++ + LP + + +   DV I+Y   
Sbjct: 5   TASNIHAFDKRLLARMIGALGDDKVIDRLALELAQIFDELLPGVLRSETGCDVTIAYAGF 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           ++G  + ++    +  +    SL +W ++F IGC + ++I L+E LLGA    I +   R
Sbjct: 65  RAGLRNELVAGLGDGVLIGDLSLRNWCTDFQIGCDSPVLIALVEALLGAEPAGIEEPAPR 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
           SLS +E  +A      I+ VL   ++      P +   Y+     K    L + +  +I+
Sbjct: 125 SLSKIEIDVALPVFHGIAEVLRIAVNAPGGFEPVVGRPYNSAERAKPDPALEDVYAASID 184

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           M + +  V S+F +I+PQ TLLKT  +S     K +N   +  +    +  +  V ++ R
Sbjct: 185 MTIGLGPVLSTFSVIVPQSTLLKTRFVSPKGAGKDQNAKTEWTEQLEEQVRRSAVALEAR 244

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I L+  TL  +  L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D   
Sbjct: 245 IRLESLTLDTIARLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSKYTVRVKDTHG 304

Query: 306 FDQKSLKNFLH 316
            +Q  L++ + 
Sbjct: 305 SEQDILRHIMS 315


>gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
 gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
 gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
          Length = 353

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 106/318 (33%), Gaps = 11/318 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
           +    H+       + L          K   +   S+     + L       M   V+I 
Sbjct: 28  KQGITHQKQ-----VTLYDFKRPNRVSKEQLRAFKSIHDKMARSLSSQVSAVMRSIVEIQ 82

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             S     +   + S      F+  S+        +  + ++   +++ LLG   +    
Sbjct: 83  LHSVDQMTYGEFLMSLPSPTSFNIFSMKPLEGAAILEINPSIAFPMIDRLLGGKGDPYEN 142

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
             +R  S +E  L    + QI   L +  S+  E  P+++       +        NE V
Sbjct: 143 --SREFSDIELNLLDTLLRQIMQNLKEAWSSITEIFPSVDAKESSPNV--VQIVAQNEIV 198

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLN 239
             + M + I + +    +  P  +L        S        +  +             N
Sbjct: 199 IMVVMEIIIGHSSGMMSICYPVISLETVLSRLASRDLMLSDTSSKKSRNKELQALIAGAN 258

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +     +LK+V+ L++G ++          ++S +G+E Y   +G      T++
Sbjct: 259 VVVSGYLGNATLSLKEVLDLQVGDIVRLDRAADDTILVSVDGREKYIASIGLQRYRKTLQ 318

Query: 300 ITDRINFDQKSLKNFLHK 317
           I + I  ++  +K  L  
Sbjct: 319 IKEVIKTEKDQVKEVLEM 336


>gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
 gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
          Length = 368

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 6/304 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
           +++          K   +    +     + L       M   V+I   S     +   + 
Sbjct: 38  VIIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVEIRLHSVDQMTYGEFLM 97

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           S      F+  S+     N  +  + ++   +++ LLG + E      +R L+ +E  L 
Sbjct: 98  SLPSPTSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGNGEGFET--SRELTDIEVNLL 155

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
              +  +   L +  S   +  PN+E       +        NE V  + M + + N + 
Sbjct: 156 DAILRMMMQRLKESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGNSSG 213

Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
              +  P   L        +        +  +           +  V  +  +     ++
Sbjct: 214 MINICYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKSIVSV 273

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
            + + LK G ++         AI++ + KE++  E+G      +IRI + I  D+  +KN
Sbjct: 274 NEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGLHRFRKSIRIEELIRSDKDEIKN 333

Query: 314 FLHK 317
            L +
Sbjct: 334 ILEQ 337


>gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC30]
 gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC10]
 gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC20]
 gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC30]
 gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC10]
 gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC20]
          Length = 332

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 10/299 (3%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K        +   + K    +   ++  +V +   + +   +   IHS  +
Sbjct: 36  DFRRPTKLSKEYVNTLHMIFEDFSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPK 95

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL------YNRSLSTVEKK 133
             +         S    I  +  L + L+E L G       +         +S + +E  
Sbjct: 96  FTLLGLFHSQPLSGIQMIEMNPQLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETA 155

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
           + +  +AQ   V              L+        +   N   NE V  +   + I  V
Sbjct: 156 ILEEVVAQFVRVYQNVWKDIVALDSVLDGIDT--NPQLMQNMSPNEPVVLVTFTIKIFEV 213

Query: 194 ASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                L IP              +  + ++  ++D      +    + +N++  +   + 
Sbjct: 214 KHFINLCIPYVFFEGIIDKLSFRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQM 273

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +L + + L+ G VI    +         +GK  +  + G+      I + D++  +Q+ 
Sbjct: 274 SLSEFLHLEEGDVIKLDKKITEPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQEL 332


>gi|295688787|ref|YP_003592480.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756]
 gi|295430690|gb|ADG09862.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756]
          Length = 369

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 96/288 (33%), Gaps = 4/288 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 67  DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 126

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEK 132
           ++S     + +        +   +   +NL+ ++++ LLG        ++  R  +T+E+
Sbjct: 127 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 186

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R I  +   L          + +L+        +             + + + +E+
Sbjct: 187 VLVQRMIEVVLHDLKSAFEPLHPVAFSLDRLET--NPRFAAIARPANAAILVKLRIDMED 244

Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     ++      +   +        A + +   + +   ++ ++ 
Sbjct: 245 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQL 304

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
            L  V+ +++G  +       +   L A    +    +GR   +  +R
Sbjct: 305 PLSRVLNMQVGDTLMLNATPDSLVELRAGAIPLTRGRMGRRNHSIAVR 352


>gi|312879599|ref|ZP_07739399.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM
           12260]
 gi|310782890|gb|EFQ23288.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM
           12260]
          Length = 334

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 104/307 (33%), Gaps = 13/307 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++  +           +        K   +    +   + + L       +   V     
Sbjct: 30  ETEERKVKIYDFRRPDKF------SKDQLRAIQMIHDSFARQLTTSLSTLVRSMVSAEVA 83

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S     +   I S  +  V     +   S N  +  + +LV ++++ +LG   E + +  
Sbjct: 84  SVDQMAYDEFIRSLVQPTVIGVLEMYPLSGNAVLEMNPHLVFSIIDRMLGGKGEPLRKP- 142

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R L+ +E+ + +R + +I   L +  ST  +     E                 + V  
Sbjct: 143 -RDLTDIERTVVERVMMKILEHLEESWSTVVDVRFRFE--SMESNPFFVQICPGTDMVLL 199

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL---IDPFARKTYQLNV 240
           + + + +        L IP   +        S    +    ++L    D  +++ ++++V
Sbjct: 200 VTLKIQVGETEGIMNLCIPYFVMEPMIDKLSSQHWFASTGKKNLEGIRDMLSKRLHEVSV 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     TL DV+ L++  VI    +      L    +  + C+ G   K+Y   +
Sbjct: 260 PLALELGHCALTLGDVLQLQVNDVIRLDGKATDPLGLRVGNRVKFLCQAGLSEKHYAGSV 319

Query: 301 TDRINFD 307
            + +  +
Sbjct: 320 LEVVQDE 326


>gi|328545470|ref|YP_004305579.1| flagellar motor switch protein FliM [polymorphum gilvum
           SL003B-26A1]
 gi|326415211|gb|ADZ72274.1| Flagellar motor switch protein FliM, putative [Polymorphum gilvum
           SL003B-26A1]
          Length = 314

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 115/302 (38%), Gaps = 3/302 (0%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           +  RL    G       +   L     +      ++K      IS +  ++ +   ++  
Sbjct: 15  ITDRLLDAAGISVDRLPMLPVLFDRMARVFADAMRQKSTSPSYISVSCIENERIGDVLDE 74

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           ++ N + +      W +   +G   + + T+++ L GA     P    RS S +E ++A+
Sbjct: 75  YEANALVAVLYSPEWDTRMLVGFDRDFIFTMIDVLFGADGTEPPIDEERSFSNIETRIAR 134

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
                 +  L +  S   E++  +E       +        N       + +        
Sbjct: 135 SVFEVAAKALQESFSPIAETTLKIERVE--SRMDFAVVGRRNNPAVVARLLLQAIGRGGE 192

Query: 197 FVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             +++P  TL             +   + +     F  +  +  V +   +  ++ TL +
Sbjct: 193 IFVVMPHSTLNPLRQRLSQVLSGEMSGRDKQWTQHFQTEIQRTEVRLQAVLEERELTLGE 252

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L++GQ+I      ++   L  N + I++C LG++  +YT+++ D I+ ++  + + L
Sbjct: 253 IANLQVGQIIELQATPRSPVKLECNQQPIFNCLLGQLDGSYTLQVEDLIHLEKDIVDDLL 312

Query: 316 HK 317
            +
Sbjct: 313 SR 314


>gi|87119476|ref|ZP_01075373.1| flagellar motor switch protein FliM [Marinomonas sp. MED121]
 gi|86164952|gb|EAQ66220.1| flagellar motor switch protein FliM [Marinomonas sp. MED121]
          Length = 322

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 88/273 (32%), Gaps = 6/273 (2%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                  +   + ++        +    D+S    Q  KF   +H+       +      
Sbjct: 49  RMPTLEMINERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRP 108

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
             S         LV  L++N  G       ++  R  +  E ++ +  + Q+   L +  
Sbjct: 109 LRSTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAW 167

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           +        L+                +E V     ++ ++       + +P   +    
Sbjct: 168 APVLSVE--LDYIGSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVR 225

Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  + + +       +   +LNV +   +      L+DV+  K G +IP   
Sbjct: 226 ELLDAGVQSDVDEKDDRWGKSLQQDVKELNVELSAAVAHVDVPLQDVLKFKAGDIIPVDI 285

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                  + ANG      +LG   + Y++++ +
Sbjct: 286 P--EFITVRANGLPTIKGKLGVSNEKYSVQVVE 316


>gi|114570494|ref|YP_757174.1| flagellar motor switch protein FliM [Maricaulis maris MCS10]
 gi|114340956|gb|ABI66236.1| flagellar motor switch protein FliM [Maricaulis maris MCS10]
          Length = 376

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 103/295 (34%), Gaps = 4/295 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 74  DKSGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 133

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     + +        +   +   +NL+ ++++ LLG     +  ++  R  +T+E+
Sbjct: 134 LNSIPLPAILAVFRAQQLDNYGLLTVDSNLIYSIVDVLLGGRRGTSAMRIEGRPYTTIER 193

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R I  +     Q  +   +   +LE        +             + + + +E+
Sbjct: 194 MLVQRMIEVVLGDAKQAFAPLTDVEFDLERVET--NPRFAAIARPANAAILVKLRIDMED 251

Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     ++      +   +        A + +   + +   ++ ++ 
Sbjct: 252 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWSTKMEVQAVLDEQRV 311

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +L  V  LK+G  +       +   L      +    +GR+G N  +R++  ++ 
Sbjct: 312 SLGTVANLKVGDTLYLDASPSSDVELRCGQVPLTRGRMGRIGHNVALRLSGPLSP 366


>gi|32266646|ref|NP_860678.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC
           51449]
 gi|32262697|gb|AAP77744.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC
           51449]
          Length = 353

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 103/304 (33%), Gaps = 6/304 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
           + L          K   +   S+     + L       M   V+I   S     +   + 
Sbjct: 37  VTLYDFKRPNRVSKEQLRAFKSIHDKMARSLSSQVSAVMRSIVEIQLHSVDQMTYGEFLM 96

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           S      F+  S+        +  + ++   +++ LLG   +      +R  S +E  L 
Sbjct: 97  SLPSPTSFNIFSMKPLEGAAILEINPSIAFPMIDRLLGGKGDPYE--SSREFSDIELNLL 154

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
              + Q+   L +  S+  E  P+++       +        NE V  + M + I + + 
Sbjct: 155 DTLLRQVMQNLKEAWSSITEIFPSVDAKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSG 212

Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
              +  P  +L        S        +  +             NV +   +     TL
Sbjct: 213 MMSICYPVISLETVLSRLASRDLMLSDTSSKKSRNKELQALIAGANVIVSGYLGDATLTL 272

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           K+++ L++G ++          I+S +G+E Y   +G      T++I + I  ++  +K 
Sbjct: 273 KEILDLQVGDIVRLDTIADDTIIVSVDGREKYIASIGLQRYRKTLQIKEVIKTEKDQVKE 332

Query: 314 FLHK 317
            L  
Sbjct: 333 VLEM 336


>gi|330721397|gb|EGG99462.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC2047]
          Length = 329

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 99/306 (32%), Gaps = 12/306 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
               +              +                +   + +F  +     +     ++
Sbjct: 31  SQPPVDGGVKAYDLTSQDHIVRG------RLPTLEMINERFARFTEQSMFNLLRETPVVT 84

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               ++ KFS            S   +             +LV+ L++   G        
Sbjct: 85  AAKIENIKFSEYTQMLGIPSSLSLVKIHPLRGTAMFVLDADLVVNLVDRFFGG-GVHDNA 143

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ ++ ++Q+   + Q   T  +     E   + +          +E V
Sbjct: 144 IGEREFTVTEQRIIQKVLSQVFVDMKQAWQTIMDID--FEYLSNEENPAMIKAISPSEVV 201

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
                 + IE       + IP   L        S  Q  +E    +  +   R     +V
Sbjct: 202 VLSTFEIKIEEKGGRIQVAIPYSMLEPVREALDSGVQVDNEYTDGNWAEALQRDLRYASV 261

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            I  R+  +K TL++++  K G VIP    E +  IL ANG  IY   +G   ++  ++I
Sbjct: 262 PISCRVAERKITLREILNFKAGDVIPIDMPESS--ILMANGVPIYEAAVGASNEHLALKI 319

Query: 301 TDRINF 306
             +I+ 
Sbjct: 320 KRQIDR 325


>gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
           ATCC 12755]
          Length = 336

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 10/299 (3%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K        +   + K    +   ++  +V +   + +   +   IHS  +
Sbjct: 40  DFRRPTKLSKEYVNTLHMIFEDFSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPK 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL------YNRSLSTVEKK 133
             +         S    I  +  L + L+E L G       +         +S + +E  
Sbjct: 100 FTLLGLFHSQPLSGIQMIEMNPQLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETA 159

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
           + +  +AQ   V              L+        +   N   NE V  +   + I  V
Sbjct: 160 ILEEVVAQFVRVYQNVWKDIVALDSVLDGIDT--NPQLMQNMSPNEPVVLVTFTIKIFEV 217

Query: 194 ASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                L IP              +  + ++  ++D      +    + +N++  +   + 
Sbjct: 218 KHFINLCIPYVFFEGIIDKLSFRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQM 277

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +L + + L+ G VI    +         +GK  +  + G+      I + D++  +Q+ 
Sbjct: 278 SLSEFLHLEEGDVIKLDKKITEPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQEL 336


>gi|329298601|ref|ZP_08255937.1| flagellar motor switch protein FliM [Plautia stali symbiont]
          Length = 269

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 82/259 (31%), Gaps = 4/259 (1%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
                +    DIS  + +   +     +       +   L        +  S +LV   +
Sbjct: 2   ALFNLLRRSPDISVGAIKIQPYHEFARNLPVPTNLNLIHLQPLRGTALVVFSPSLVFIAV 61

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           +NL G       ++  R  +  E+++ +R +       +                  +  
Sbjct: 62  DNLFGGDGRFPTKVEGREFTHTEQRVIRRMLKLALEGYSDAWKAIYPLEVEYVRSE-MQV 120

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDL 227
              N     N+ V      + I N+   F + IP   +     + ++   + S  +    
Sbjct: 121 KFINITTSPNDIVVNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHW 180

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            D   ++     + +          L  ++ LK+G V+P         I   +G  + + 
Sbjct: 181 RDNLVKQVQHSELELIAHFAETSLRLSRILQLKLGDVLPIEKP--DRIIAHVDGVPVLTS 238

Query: 288 ELGRVGKNYTIRITDRINF 306
           + G +   Y +R+  +IN 
Sbjct: 239 QYGTLNGQYALRVEHQINP 257


>gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 335

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 7/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   + + L       +   V     S     +   I S  +  V     
Sbjct: 48  SKDQLRAIQMIHDSFARQLTTSLSTLVRSMVSSEVVSVDQLAYDEFIRSLVQPTVIGVLE 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +   S N  +  + +LV  +++ +LG   E I +   R L+ +E+ + +R + +I   L 
Sbjct: 108 MYPLSGNAVLEMNPHLVFAIIDRMLGGKGEPIRKP--RDLTDIERTVVERVMLKILEHLE 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  ST  +     E                 + V  + + + +        L IP   + 
Sbjct: 166 ESWSTVVDIRFRFE--SMESNPFFVQICPGTDMVLLVTLKVQVGEAEGIMNLCIPYFVME 223

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                        +      E   +    +  ++ V +   +     +L DV+ L+ G V
Sbjct: 224 PMIDKLSSQHWFASTGRKNVEGAREIIEARLSKVAVPVALELGHTVLSLGDVLQLREGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           I    +      L    +  + CE G   K+Y  R+ + ++ ++
Sbjct: 284 IRLDAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLEVLSSEE 327


>gi|255022053|ref|ZP_05294059.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
           51756]
 gi|254968539|gb|EET26095.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
           51756]
          Length = 366

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 92/309 (29%), Gaps = 12/309 (3%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           PL  +   R+       ++       L   + +         + ++ DI   S Q  K+ 
Sbjct: 62  PLDLLNQDRM------NRSRMPTMEVLNDRFARSFRGSLFNYLRVNADIISLSAQIQKYG 115

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
             I        F   SL+    +        L   ++E   G +    P+L  R  S +E
Sbjct: 116 EYIGKIALPSYFVMVSLTPLRGSMLFIMDPYLCYAVIEAFFGGNGRLEPKLEGRDFSVIE 175

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +++  + I               +  P +         +  +   S E V      + +E
Sbjct: 176 QRVFNKIIDHAVEDFTSAWEPIIKLRPKVLRSDVKS--QFVSIASSTEGVVGSVFEIEME 233

Query: 192 NVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
             +      IP  T+       +S                         V++   +  + 
Sbjct: 234 RWSGKLYTCIPYNTVEPLREQLVSGVAADQSEMDPSWKQMLHMDIQNAMVDVSVILASQD 293

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR-ITDRINFDQK 309
             L    TL+ G V+ F   +   A +      I     G     Y ++ ++ R   ++ 
Sbjct: 294 IPLSRARTLQKGDVLSFDRVQD--ARVYVEDILIGEGRYGAFKNQYAVKLVSYRTPSEED 351

Query: 310 SLKNFLHKR 318
            L++   K+
Sbjct: 352 VLQSIRLKK 360


>gi|224370777|ref|YP_002604941.1| FliM [Desulfobacterium autotrophicum HRM2]
 gi|223693494|gb|ACN16777.1| FliM [Desulfobacterium autotrophicum HRM2]
          Length = 326

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 88/286 (30%), Gaps = 3/286 (1%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
             T +    +        +     + +       +  +VD++     + KF+  + S   
Sbjct: 40  DFTSQDKVVRARMPTFDVINERLSREIRTSLSGLLQTNVDVTANPLDTLKFTEFVRSLPV 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
                   +     +  +   + LV  L++   G       ++  R  + +E+ + K+ +
Sbjct: 100 PTSLHVFRMEPLRGHGLVVLESQLVYNLIDTFFGGEGLGKARVEGREFTAIEEVMIKKVV 159

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
                 + +     +    +L         +     L  + V      + +E  A + VL
Sbjct: 160 VACLKDIEKAWLPIEPVKTSLIRSEM--NPQFAAIVLPTDLVIVTRFEIELEQAAGNLVL 217

Query: 200 IIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
            +P   +        S  Q ++E               +  VN+  ++   + + + ++ 
Sbjct: 218 CLPYAMIEPLRAKLASGFQAETEEIDVAWRKRLQEIILESTVNLRVQLGTTEISGERLIY 277

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           L+ G VI   +  K       +G        G        R+  ++
Sbjct: 278 LQPGDVIQLDNDAKDMLTGYVDGLPKVRGFAGVQRGFQAFRVEKKL 323


>gi|254470104|ref|ZP_05083508.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
 gi|211960415|gb|EEA95611.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
          Length = 409

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 100/298 (33%), Gaps = 4/298 (1%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                +  L            +   +     +      +     +V++S  S  + +F  
Sbjct: 97  GDEGGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSMTNVRFGD 156

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVE 131
            ++S     +        W     +   ++L+ ++++ LLG     +  ++  R  +T+E
Sbjct: 157 YLNSIPLPAILGVFKAKEWDGFGLVTVESSLIYSIIDVLLGGGRGSSPTRVEGRPYTTIE 216

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             L +R I  I     Q        S  LE        +             + + + +E
Sbjct: 217 SNLVRRMIEIILLDAEQAFGPLSPVSFPLERLET--NPRFAAISRPANAAIMVELRIDME 274

Query: 192 NVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
           +      +++P  TL     + L     +   +     +  A + Y   V +D  +    
Sbjct: 275 DRGGKVEIVLPYATLEPIRDLLLQMFMGEKFGRDPIWEEHLATEVYSSEVQVDAVLYENT 334

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             L+ V+ L++GQ + F    +    +   G ++    +G V    +I I+ ++   +
Sbjct: 335 IPLQRVLNLEVGQTLLFDTGPRDPVQVKCGGVQLTEGLMGHVDDRISIEISKKLKQPK 392


>gi|168334557|ref|ZP_02692713.1| flagellar motor switch protein FliM [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 327

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 86/291 (29%), Gaps = 6/291 (2%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
                   +   +    +G  Y + + +     M   V I   S ++  FS    S    
Sbjct: 41  FARPTKFSREHLRTLELMGENYARLISQYLSGLMRTLVPIKVVSSEAITFSDFTSSLSNP 100

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
              +        +N  +  S N+    LE LLG     +  +  R  +++E  +  R + 
Sbjct: 101 IALAIVDPYPLKNNMLLELSTNVAFAFLERLLGGEGTELEHV--REFTSIELVILIRVLE 158

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
                + +         P +         +        E V  I  ++    V     L 
Sbjct: 159 HFVDYMREPWENMVALKPRMSRVET--NSQILNMIAPTEMVALITFSIQFGAVDGLMNLC 216

Query: 201 IPQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           IP  T+        +S     +  +  +          + N+ +   +     T+K+ + 
Sbjct: 217 IPYLTVEPIMDKLNTSYQFQSSDDKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIE 276

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           L+IG +I       +   +       +    G       ++I   ++ +  
Sbjct: 277 LQIGDIIRLDTTIDSLIDVYVGNVVKFKAVPGIHKNKSAVQIKQILDKEDD 327


>gi|39995529|ref|NP_951480.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA]
 gi|39982292|gb|AAR33753.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA]
 gi|298504529|gb|ADI83252.1| flagellar motor switch protein FliM [Geobacter sulfurreducens
           KN400]
          Length = 328

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 96/282 (34%), Gaps = 4/282 (1%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K +      +   + ++       ++   V+I      S KF   I +       +    
Sbjct: 47  KGLVPNLDIIYDGFIRYQRGTLSNRLGRIVEIKKLGAGSYKFDDFIQTLPSPVCMAIYKA 106

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQL-YNRSLSTVEKKLAKRTIAQISAVLN 147
                   I   + LV T+++ +LG +  T  Q   NR  +++E +L ++ +  +   L 
Sbjct: 107 DPLKGAALIAFDSTLVFTIVDCILGGTGMTSVQTSANRMFTSIELRLVQKIVQDMLVDLE 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +    +  +L         +          V T+ M + I+ +    V  +P  T+ 
Sbjct: 167 KAWAPLYAAKMSL--LRMEMNPRLVNIVPPEYQVVTMEMQIQIDQLEGKMVFAVPYMTIE 224

Query: 208 KTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                    +Q              +++  +  +++   +     +L D+++L  G  I 
Sbjct: 225 PIRDKLKSGAQFDLMAIDPQWSFRLSKELLEAPLDVSVEVGGAVISLNDLLSLVPGDTIM 284

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                 +   +   G   ++   G    N  ++IT+ +   +
Sbjct: 285 LDTPCTSDLTVKVGGVPKFTGMPGIRHGNKALQITNVVGKGE 326


>gi|83858803|ref|ZP_00952325.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853626|gb|EAP91478.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
          Length = 385

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 102/294 (34%), Gaps = 4/294 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 83  ERSGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 142

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     + +        +   +   +NL+ ++++ LLG     +  ++  R  +T+E+
Sbjct: 143 LNSIPLPAILAVFRAKQLDNYGLLTVDSNLIYSIVDVLLGGRRGTSAMRVEGRPYTTIER 202

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R I  + A   Q  +   E   +L+        +             + + + +E+
Sbjct: 203 TLVQRMIEVVLADARQAFAPLTEVDFDLDRVET--NPRFAAIARPANAAILVKLRIDMED 260

Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     ++      +   +        A + +   + +   ++  + 
Sbjct: 261 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWESHLATELWSTKMEVSAVLDEMQK 320

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
            L +V+ LK+G  +           L      +    +GR+G N  +R+   ++
Sbjct: 321 PLGEVMQLKVGDTLMLDAGPDGLIELRCGTVPLAHGHMGRIGHNIGVRLDRPLS 374


>gi|167645399|ref|YP_001683062.1| flagellar motor switch protein FliM [Caulobacter sp. K31]
 gi|167347829|gb|ABZ70564.1| flagellar motor switch protein FliM [Caulobacter sp. K31]
          Length = 377

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 94/288 (32%), Gaps = 4/288 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 75  DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 134

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     + +        +   +   +NL+ ++++ LLG        ++  R  +T+E+
Sbjct: 135 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 194

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R +  +              S  L+        +             + + + +E+
Sbjct: 195 VLVQRMVEVVLHDAKAAFEPLHPVSFTLDRLET--NPRFAAIARPANAAILVKLRIDMED 252

Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     ++      +   +        A + +   + +   ++ ++ 
Sbjct: 253 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQL 312

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
            L  V+ LK+G  +       +   L A    +    +GR   +  +R
Sbjct: 313 PLSRVLDLKVGDTLMLNATTDSLVELRAGSIPLTRGRMGRRNHSIAVR 360


>gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
 gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
          Length = 332

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 94/299 (31%), Gaps = 10/299 (3%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    K        +   + K    +   ++  +V +   + +   +   IHS  +
Sbjct: 36  DFRRPTKLSKEYVNTLHMIFEDFSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPK 95

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL------YNRSLSTVEKK 133
             +         S    I  +  L + L+E L G       +         +S + +E  
Sbjct: 96  FTLLGLFHSQPLSGIQMIEMNPQLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETA 155

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
           + +  +AQ   V              L+        +   N   NE V  +   + I  V
Sbjct: 156 ILEEVVAQFVRVYQNVWKDIVALDSVLDGIDT--NPQLMQNMSPNEPVVLVTFTIKIFEV 213

Query: 194 ASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                L IP              +  + ++  ++D      +    + +N++  +   + 
Sbjct: 214 KHFINLCIPYVFFEGIIDKLSFRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQM 273

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +L + + L+ G VI    +         +GK  +  + G+      I + D++  +QK 
Sbjct: 274 SLSEFLHLEEGDVIKLDKKITEPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQKL 332


>gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
           DFL-11]
 gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
           DFL-11]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 120/316 (37%), Gaps = 7/316 (2%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           QS   +   +   +  RL    G       +   +     + +  + ++K      IS +
Sbjct: 9   QSTSNSERAM---ITDRLLDAAGISVDRLPMLPVVFDRMARLMADVMRQKSPSPSYISVS 65

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
             ++ +   ++  F+ N + +      W +   +G   + + TL++ L GA     P   
Sbjct: 66  YVENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDE 125

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  S +E ++A+      +  L +  +   E++  +E       +       SN     
Sbjct: 126 ERPFSNIETRIARTIFEIAAKSLAESFAPIAETTLKIERIE--SRMDFAVVGRSNNPAVV 183

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
             +            +++P  TL             +   + +     F  +  +  V +
Sbjct: 184 GRLLQQAIGRGGEVFVVLPHATLNPLRQALSQVLSGEMSGRDKQWTQHFHNEIQRTEVKL 243

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +  +  ++  L ++  LK+GQVI      ++   L+ N + I++C+LG++  +YT++I +
Sbjct: 244 EAILEEREMHLGELSNLKVGQVIELQATARSPVTLACNDQPIFTCQLGQLDGSYTLQIEE 303

Query: 303 RI-NFDQKSLKNFLHK 317
            I   ++    +  ++
Sbjct: 304 LIHEEEKDLFDDLRNR 319


>gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
 gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
 gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
          Length = 331

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 97/275 (35%), Gaps = 7/275 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   Y + +      ++  +V +   S +   +   IHS +   + +   
Sbjct: 48  SKDHIRTLELIHDNYARIISSYLTAQVRSNVKVKIESVEQTTYEEFIHSIQNPTILTVFK 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +   + N     +   V  +++ LLG + E   +  NR  + ++K +  R    + + L 
Sbjct: 108 MPPLAGNILFETNPQFVYQIIDILLGGTGE--GKYKNREFTDIDKNIITRINEGLISNLK 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
              S   E +P +E          N     +E V  I   + I    +   + IP   + 
Sbjct: 166 LAWSEVLEVNPEIETIET--NPALNQTLAPHEPVALIIFTIEIGESRTYINICIPFICIE 223

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           K            + S+ + E   +    K   + +  +  +     T++D + L +G V
Sbjct: 224 KYLDHLEIKHWYHDSSDEEDEVTKEYLRMKLDSVQLVSEVILGNASVTVEDFLNLTVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +    + +    +    +  +  + G +GK   ++
Sbjct: 284 VTLERKFEDPLEVVIEERPHFLAKPGIIGKKTGVQ 318


>gi|222823278|ref|YP_002574851.1| flagellar motor switch protein FliM [Campylobacter lari RM2100]
 gi|222538499|gb|ACM63600.1| flagellar motor switch protein FliM [Campylobacter lari RM2100]
          Length = 363

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       M   V+I   S     +   + S      F+  S
Sbjct: 51  SKEQLRSIKGIHDKLARNLASQISSMMRSIVEIKLHSVDQMTYGEFLMSLPSPTSFNVFS 110

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + ++   +++ LLG   ++   L  R L+ +E  L    +  I   L 
Sbjct: 111 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSFDTL--RELTEIELNLLDSILRIIMQRLK 168

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +      E  P++E       +        NE V  + M + I N +    +  P   L 
Sbjct: 169 ESWMNVTEIYPSVEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 226

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +           +  V  +  +      + + + LK G ++
Sbjct: 227 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVIYEAMLGKTFINVNEFLDLKQGDIL 286

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    AI++ + KE++  ++G      +I+I + I  D+  +K  L K
Sbjct: 287 KLDRSADDKAIVAIDKKEVFLAQVGLHRFRKSIKILELIKTDKDEIKEMLEK 338


>gi|134300220|ref|YP_001113716.1| flagellar motor switch protein FliM [Desulfotomaculum reducens
           MI-1]
 gi|134052920|gb|ABO50891.1| flagellar motor switch protein FliM [Desulfotomaculum reducens
           MI-1]
          Length = 330

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 98/277 (35%), Gaps = 7/277 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K   +    L   Y + L       +   + I   S     +   I+S     V +  SL
Sbjct: 49  KEQLRTLHVLHEGYARLLSNFLSGYLRTPITIEIASIGQFTYEEFINSVPSPTVMTIFSL 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +    +  +  +   +  +++   G   E  P+   R L+ +E  ++ R I ++   L  
Sbjct: 109 APLKGSALMETNLQFLFPIIDLQFGGLGEMPPKT--RELTDIELSVSNRIIKRLLDHLTI 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI-ENVASSFVLIIPQETLL 207
                   SP +E          +     N+ V  I  +  + E V     L +P   L 
Sbjct: 167 SWKDIMSVSPKVESIDA--NPHLHQLMSPNDIVVVITFSTGVAEEVRGLINLCLPYSLLD 224

Query: 208 KTTLI--SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                    +   K+  Q +  +        + +V I   +   + T+KD + L++G V+
Sbjct: 225 PILSKFSMANQFTKTTEQDQKELMALEYWLGESDVAISVVMGEAQITVKDFLQLQVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           P          +  + +  Y  ++G VG++  +++T 
Sbjct: 285 PLGRGLTQDLDMYVDEELKYKVQVGTVGQSLAVQVTS 321


>gi|208434362|ref|YP_002266028.1| flagellar motor switch protein [Helicobacter pylori G27]
 gi|208432291|gb|ACI27162.1| flagellar motor switch protein [Helicobacter pylori G27]
          Length = 334

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 9   KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 68

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 69  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 126

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 127 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 184

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 185 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 244

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 245 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 304

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 305 SEKERTKEILEM 316


>gi|242281039|ref|YP_002993168.1| flagellar motor switch protein FliM [Desulfovibrio salexigens DSM
           2638]
 gi|242123933|gb|ACS81629.1| flagellar motor switch protein FliM [Desulfovibrio salexigens DSM
           2638]
          Length = 326

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 93/302 (30%), Gaps = 10/302 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                        R+            +   +   + +         M   VDI+  S  
Sbjct: 32  DSGVVSFDLANQDRIIRG------RMPVLEIVNDRFARLATNNLANTMRKRVDINPISID 85

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             KF   + S       S   +     N  +   + LV  L+E+  G S     ++  R 
Sbjct: 86  MSKFGDFMRSLPVPTSLSIFKMDPLRGNAILVVDSRLVFALVESFFGGSGSQP-KVEGRD 144

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            + +E+ +  R +    + L        E    L         +       ++ V  I  
Sbjct: 145 FTPIEQAIVDRVVKIALSNLEDSWRPVHEVHLELVR--SEVNPQFAAIVPPSDVVVVITF 202

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            + +EN   S ++ +P  TL         S Q++        +  F  +  +  V++  R
Sbjct: 203 EVELENAIGSLIVCLPYSTLEPIRSKLHASFQSERLEIDHVWVSRFKERLLETPVDLLVR 262

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   K T + ++ L+ G ++     E+        G   Y    GRV  N   +I   I 
Sbjct: 263 LGKTKITGRQLLNLEEGDLLLLDTDEEDMLECEVGGVLKYLGSPGRVKANRAFQIAQAIE 322

Query: 306 FD 307
             
Sbjct: 323 PK 324


>gi|291519586|emb|CBK74807.1| Flagellar motor switch protein [Butyrivibrio fibrisolvens 16/4]
          Length = 272

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 96/275 (34%), Gaps = 7/275 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
             +   Y + L       +  ++ +   + ++  +    +S     +      +   +N 
Sbjct: 2   EIIFEHYGRLLSTNLPIFLRKNIQVEVINSEAVTYMEFSNSLSNPVLLGIVDFAPLETNI 61

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  ++NL   +++ +LG   E + ++  R  S +E  + +R +     +L +      +
Sbjct: 62  IVEMASNLGFAMVDRMLGGVGEPLDKV--RDFSEIELLIIERVMTSCVELLREPWENVLD 119

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL- 214
           + P LE        +       +E +  + +N+ I +V     + +P  TL         
Sbjct: 120 AHPRLERIET--NSQFAQIISPSEMIAIVTLNIKIGDVEGLMNICLPFITLEPVMDKLNT 177

Query: 215 --SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                ++ E       D       +  + +   +     T+ D   L++G ++    +  
Sbjct: 178 KFWYSSQKEKTGASFSDTVEALISRAKIPVKAVLGNSVITVADFSQLQVGDIVKLDTKVD 237

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +       ++   G  GK Y +R+T  I  +
Sbjct: 238 EELDVFVGDIRKFAALPGASGKEYAVRVTQIIREE 272


>gi|323490151|ref|ZP_08095371.1| flagellar motor switch protein FliM [Planococcus donghaensis
           MPA1U2]
 gi|323396199|gb|EGA89025.1| flagellar motor switch protein FliM [Planococcus donghaensis
           MPA1U2]
          Length = 327

 Score =  216 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 93/299 (31%), Gaps = 13/299 (4%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           +N          R        +   +  S +   + + L   F  ++   V +       
Sbjct: 29  RNVQAYDFKKALRF------SQDQIRTLSRIHENFSRLLSSYFSAQLRTYVQVGVEVVAE 82

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + + ++  +      +    +  +  S N+V  + + LLG     + +     L
Sbjct: 83  ISYEEFVENVQKKSMLGVFEAAPLQGSMVMEFSPNVVHVMFDRLLGGQGHVLEKDS--EL 140

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           + +E  + +R  A+      +   +  + SP L         +  T    NE V  + + 
Sbjct: 141 TEIEISVIERVFAKALDCFQEAWLSVVKLSPEL--KEIEVNSQFLTTSPPNETVILVKLQ 198

Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
             I NV     + +P   L +            N+ +      +     K +   + I  
Sbjct: 199 TKIGNVEGVINICLPHVVLEQILPKLSAKHWLANQKKAIEAHEVVALEEKLHGTKMEIKA 258

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            +        D + LK G VI       +   L  + K  +  + G       I++T+ 
Sbjct: 259 VLGQSMIEFGDFLNLKKGDVIRLDESYDSPVTLQVDNKLKFYAQPGVSKGRMAIQVTEV 317


>gi|197104384|ref|YP_002129761.1| flagellar motor switch protein FliM [Phenylobacterium zucineum
           HLK1]
 gi|196477804|gb|ACG77332.1| flagellar motor switch protein FliM [Phenylobacterium zucineum
           HLK1]
          Length = 358

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 101/281 (35%), Gaps = 4/281 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
                 +   +     + +    +     +V++S  +  S +F   ++S     + S   
Sbjct: 70  SYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILSVFR 129

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
               ++   +   +NL+ ++++ LLG        ++  R  +T+E+ L +R +  + A  
Sbjct: 130 AEELNNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMVEVVLADA 189

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            +        S  L+        +             + + + +E+      L++P  TL
Sbjct: 190 REAFEPLTPVSFTLDRLET--NPRFAAIARPANAAILVKLRIDMEDRGGRIELLLPYATL 247

Query: 207 LKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                ++      +   +        A + +  N+ +   ++ ++ +L+ V+ LK+G  +
Sbjct: 248 EPIRKMLLQQFMGEKFGRDNIWESHLATELWTTNMEVRAVLDEQQVSLQKVLDLKVGDTL 307

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                  +   L A    +    +GR   +  +R+   ++ 
Sbjct: 308 MLNATPDSLIELRAGAIPLTRGRMGRRNHHIAVRVEAPLSP 348


>gi|329849711|ref|ZP_08264557.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum
           C19]
 gi|328841622|gb|EGF91192.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum
           C19]
          Length = 388

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 101/290 (34%), Gaps = 4/290 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 84  ERSGIRAIINSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 143

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
           ++S     + +        +   +   +NL+ ++++ LLG        ++  R  +T+E+
Sbjct: 144 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIER 203

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R +  +     Q        + NL+        +             + + + +E+
Sbjct: 204 VLVQRMVEVVLNDARQAFEPLTAVNFNLDRLET--NPRFAAIARPANAAILVKLRIDMED 261

Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     ++ L    +   +        A + +   + +   ++ ++ 
Sbjct: 262 RGGRIELLLPYATLEPIRKMLLLQFMGEKFGRDNIWESHLATELWTTQMEVRAVLDEQQV 321

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            L  V+ LK+G+ I    +  +   L      + +  +GR G +  +R+ 
Sbjct: 322 PLSRVLNLKVGETIVLNAQADSPVQLRCGQIPLTTGRMGRKGHSIAVRVD 371


>gi|268678938|ref|YP_003303369.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616969|gb|ACZ11334.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 353

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 103/310 (33%), Gaps = 6/310 (1%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   + +    ++L          K   +    +     + L       M   V+I   S
Sbjct: 25  SSELDNTESKQVILYDFKRPNRVSKEQLRAVKGIHDKMARNLASQISAIMRSIVEIQLHS 84

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
                +   + S      F+  S+     N  I  + ++   +++ LLG   E+      
Sbjct: 85  VDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCIIEINPSIAFPMIDRLLGGLGESYE--AT 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R L+ +E  L    +  I   L +  +   +  P +E       +        NE V  +
Sbjct: 143 RELTDIELNLLDAILRIIMQRLKEGWAPITDMYPAIETKESSPNV--VQIVSQNEIVIMV 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNI 242
            M + I N +    L  P   L        +        +  +           +  V  
Sbjct: 201 VMEIIIGNSSGMINLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKELNTLISRAEVFN 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +  I   + ++ +++ LK G ++         AI+  + KE++  E+G    + +I+I  
Sbjct: 261 EAIIGQAELSVGELLELKKGDIVRLDRAADDKAIVMIDKKELFLAEIGLHRFHKSIKIER 320

Query: 303 RINFDQKSLK 312
            +  D+  +K
Sbjct: 321 LVKTDKDEVK 330


>gi|109947667|ref|YP_664895.1| flagellar motor switch protein FliM [Helicobacter acinonychis str.
           Sheeba]
 gi|109714888|emb|CAJ99896.1| fliM [Helicobacter acinonychis str. Sheeba]
          Length = 354

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 103/312 (33%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+ +P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDITPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNRELQALLSSVSVDMIVL 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKEHTKEILEM 336


>gi|323703196|ref|ZP_08114849.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531855|gb|EGB21741.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans
           DSM 574]
          Length = 330

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 7/286 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K   +    L   Y + L       +   + I   S     +   I+S     V +  SL
Sbjct: 49  KEQLRTLQVLHEGYARLLSNFLSGYLRTTITIEVASIGQFTYEEFINSVPTPTVMTIFSL 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S       +  +   +  L++   G S +   ++  R L+ +E  +A R I ++   L  
Sbjct: 109 SPLKGTALMETNLQFLFPLIDLQFGGSGDMPMKV--RELTDIELSVANRIIKRLLDHLTV 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207
                   +P +E          +     N+ V  +  +  + N V     + +P   L 
Sbjct: 167 TWKDIATITPKIESIDA--NPHLHQLMSPNDIVAVLTFSTAVGNEVKGLINMCLPYNFLD 224

Query: 208 KTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +     +   Q E  ++       + +V I   +     ++KD + L++G V+
Sbjct: 225 PVLAKFSAANQFTRDNEQKEQDLEALEFWLGESDVEISVVVGETDISVKDFLQLQVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           P          +  + +  Y  ++G VG++  +++T       + +
Sbjct: 285 PLARGFNQDLDMYVDNELKYKVQVGTVGQSLAVQVTSLAEEAWEIV 330


>gi|149179192|ref|ZP_01857759.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797]
 gi|148841965|gb|EDL56361.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797]
          Length = 349

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 5/293 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +   +L   + +         +   +++   S     +S  + S +    F+   
Sbjct: 53  SKEQMRAFRALHESFSREFGAALSGMLRSIIEVKLISVDQLTYSEFVFSLENPTCFNLLE 112

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
             +   +  +  S +++  +++ LLG    +     NR+L+ +E +L  R        + 
Sbjct: 113 SETLDGHIILDISPSIIFPIIDRLLGGDGHSHGAYPNRALTEIEIRLVSRITGLAIEGIE 172

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
              S   +    +         +       NE +  I+  +T+        L IP  T+ 
Sbjct: 173 SAWSNLCDWKLRVS--QVESNPQLVQIVPPNEVIVLISFEVTMGETRGIINLCIPFNTIE 230

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +        S  K ++              +  + +   ++  K T  +V+ L +G V
Sbjct: 231 PLSNKLTSDTWSAYKKKSPDLRQQLNLEASVSKSKIAMRVELDNSKLTAGEVLNLAVGDV 290

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           I           +   G  +++   G    +  I I   +   +  ++  L K
Sbjct: 291 IMCNKGSAQSLTVELEGSPVFTAFPGVYKGHKAISIEKMLAIPRDVIEERLKK 343


>gi|170741398|ref|YP_001770053.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
 gi|168195672|gb|ACA17619.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
          Length = 303

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 113/303 (37%), Gaps = 3/303 (0%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +  RL    G       + + +            K      +  S  S +SG F  ++ 
Sbjct: 3   DVRDRLLDASGLSPDRLPMLNVIFDRLATACADNLKHLAVSPIFYSLMSVESGLFGDLLE 62

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
            ++ N V        W  +  +G   + V T++E LLGA     P    R+ S++E ++A
Sbjct: 63  PYEANAVVGIFYSPQWDGHLLVGLDRDFVFTMVEVLLGADGSEPPVEEARNFSSIELRIA 122

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           + T  QI   L    +    ++  LE       +        +         +   N   
Sbjct: 123 QMTFEQIGKALEAAFALVSVATLKLERTET--RMDFAIIGRRSNKAVAAKFLLQALNRGG 180

Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              LIIPQ  L             +S ++        + +  +  V +   +  +  TL 
Sbjct: 181 EMFLIIPQAVLNPMRQSLSKVLTGESTSRDPRWEKQISTEVRKTEVTLRAVLEERTLTLG 240

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           ++  LK+GQV+      ++   L  N + ++ C++G+    Y +R+ D+I+ D++ +   
Sbjct: 241 EIADLKVGQVLTLDATPRSRVKLQGNDQALFWCQVGQANGAYVLRVEDQIDQDKEFMDGV 300

Query: 315 LHK 317
           L +
Sbjct: 301 LAR 303


>gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
 gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
          Length = 329

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 99/306 (32%), Gaps = 13/306 (4%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             K  S        R+       K   +   +L   + +         +    D++  S 
Sbjct: 33  TKKKVSLYDFKRPDRV------SKDQMRSIKNLHDKFARNFSSSLSGYLRSITDMNLISV 86

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
               +   + S      F+  S+     N  +  + +LV  +++ LLG   E I ++  R
Sbjct: 87  DQMTYGEFLMSLPNPTSFNIISMLPLDGNAVLEVNPSLVFPIIDKLLGGQGEPIDEV--R 144

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
            ++ +E+ +    +A     L +           +E                NE V  + 
Sbjct: 145 EITDIEQNVIGGVLAIALRELAEVWQPIINIRFKIELRET--SPHVIQIVSQNEVVILLV 202

Query: 186 MNMTIENVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
             + + +V+    + IP   L                 +  +   +        +   N+
Sbjct: 203 FEIKVGDVSGMMNICIPAIVLEPIMQKIDSQDWLIGAKKMHATANVQQITSIVSKSRTNL 262

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     TL++++ L+IG ++    + +   +L     + Y  E+G +  N   +I  
Sbjct: 263 QAVLGESTMTLREILDLEIGDILTLSTKVRDPMVLQVGDMKKYYGEIGIIDNNKAFKIHR 322

Query: 303 RINFDQ 308
           +I  + 
Sbjct: 323 KIVKED 328


>gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
           12809]
          Length = 336

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 102/305 (33%), Gaps = 12/305 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K  S        R+       K   +   +L   + +         +    DI+ TS   
Sbjct: 36  KKISVYDFRRPDRV------SKEQLRSIRNLHDKFARNFSSTLSNYLRTITDITLTSVDQ 89

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S  +   F+  S+     N  +  + +LV  +++ LLG + + + Q   R L
Sbjct: 90  MTYGEFLMSLPDPTSFNIISMIPMEGNAVLEINPSLVFPIVDKLLGGTGKPLFQT--REL 147

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +++E+ +    +  I   L +        +  L+     +          NE V  +   
Sbjct: 148 TSLEQHIMDGILGLILKDLEEVWRQIIP-NIRLKKELSENSPHIIQIVSQNEVVILVVCE 206

Query: 188 MTIENVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +    V     L IP   L         S       +    +  D          V    
Sbjct: 207 VKFGEVLGMMNLCIPAIVLEPVLGKISSSDWLIGAKKGLQGEKEDEIMHMLNDTEVPTSI 266

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +   K T++DV+ L+ G ++ F  ++     +  N K+ +  E+G +G    ++IT  I
Sbjct: 267 YLGHNKLTIEDVLGLQNGDLVMFNVKQDRPVEIHFNNKQKFLGEVGTLGVKKAVKITQFI 326

Query: 305 NFDQK 309
                
Sbjct: 327 TESDD 331


>gi|332702324|ref|ZP_08422412.1| flagellar motor switch protein FliM [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552473|gb|EGJ49517.1| flagellar motor switch protein FliM [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 325

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 93/299 (31%), Gaps = 10/299 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
                          R+            +   +   + +         M   VD++  S
Sbjct: 30  QEDDGAVTFDLSNQDRIIRG------RMPVMEIINDRFARLATNALANAMRKRVDVNPIS 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
               KF   + S       +   +     N      + LV  L+EN  G S     ++  
Sbjct: 84  IDMSKFGDFMRSLPVPTSINIFKMEPLRGNALCVVDSRLVFALVENFFGGSGTQP-KVEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  + +E+ +  + +      + +  +   E   ++E        +       +E V  +
Sbjct: 143 RDFTHIEQAIIGKVVDLALTNMEEAWAPVHEV--HIELIRAEINPQFAAIVPPSEVVVVV 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
              + +EN   SF++ +P  T+         S Q++        I  F  +  +  V + 
Sbjct: 201 TYEVELENAIGSFIVCLPYATIEPIRAKLYASFQSERLEVDHAWISRFKERLMETPVEMV 260

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            R+     T + ++ + IG ++          +   +G   +    GRV  N   ++  
Sbjct: 261 VRMGKTSITGRQLLNMDIGDILLLDTDVDDLLVAEVDGVRKFHGIPGRVKGNRAFQVLK 319


>gi|224373367|ref|YP_002607739.1| flagellar motor switch protein FliM [Nautilia profundicola AmH]
 gi|223588573|gb|ACM92309.1| flagellar motor switch protein FliM [Nautilia profundicola AmH]
          Length = 356

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 97/292 (33%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +   ++     + L       M   V+I   S     +   + S      F+  S
Sbjct: 51  SKEQLRSIRAIHDKMARSLASDISSLMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 110

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L        I  + ++V  +++ LLG S         R  + +E  L  + +  ++  + 
Sbjct: 111 LKPLDGKGVIELNPSIVFPMIDRLLGGSGAPFETT--REFTDIELNLLDQILKVVTQNMK 168

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   +  P +E       +        NE V  + M + I   +    +  P  T+ 
Sbjct: 169 EVWSPIMDLYPIIEAKESSPNV--VQIVAQNEIVIMVIMEIIIGQTSGMMNICYPVITIE 226

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +              + ++  +   +  +K V+ L++G +I
Sbjct: 227 SLLPRLANRDLMLNETSGRKSRNKELRALLRGAKIELEAVLGYAELNMKQVLDLEVGDII 286

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                     I+  +G+E +  E G      +I+I + +  +   +K  L K
Sbjct: 287 KLNRPADDTVIVKVDGREKFIAEFGVRRYRRSIKIKEILKTEHDEIKEILQK 338


>gi|207092363|ref|ZP_03240150.1| flagellar motor switch protein FliM [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|317012255|gb|ADU82863.1| flagellar motor switch protein FliM [Helicobacter pylori
           Lithuania75]
          Length = 354

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + I 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|148266212|ref|YP_001232918.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4]
 gi|146399712|gb|ABQ28345.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4]
          Length = 328

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 92/268 (34%), Gaps = 3/268 (1%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +   + ++       ++   VDI     ++ KF   +         +   +        +
Sbjct: 56  IYDGFIRYNRVTMSNRLGKMVDIKKDGARTYKFDDFLQILPSPVCMAIYKIEPLKGAALV 115

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
              N LV T+++++LG +        NR  + +E +L ++ +      + +  +      
Sbjct: 116 AMDNTLVFTIVDSILGGTGAPSIPSNNRLFTPIELRLMEKIVKDALVDMEKAWAPLLAVK 175

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
            NL         +      S   V T+++ + IE    + +L +P  T+        S  
Sbjct: 176 MNL--LRMEMNPRLVNIVPSEYQVVTMSLKIQIEETVGTMILAVPYMTIEPVRDKLKSGM 233

Query: 218 N-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                          + +  +  + I   +     TL +++ L  G  I   +R ++  +
Sbjct: 234 QVDMMAVDPQWSYRLSEELAEAPLEISVEMGNSVITLDELLNLAPGDTIMLNNRGRSELL 293

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304
           +   G   ++   G    N  ++I+  +
Sbjct: 294 VKVGGVNKFTGIPGVRDGNKAVKISRIL 321


>gi|217031646|ref|ZP_03437151.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128]
 gi|298736644|ref|YP_003729170.1| flagellar motor switch protein FliM [Helicobacter pylori B8]
 gi|216946846|gb|EEC25442.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128]
 gi|298355834|emb|CBI66706.1| flagellar motor switch protein FliM [Helicobacter pylori B8]
          Length = 354

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + I 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|189426342|ref|YP_001953519.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ]
 gi|189422601|gb|ACD96999.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ]
          Length = 331

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 97/271 (35%), Gaps = 4/271 (1%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +   + +F       ++   V+I     +S KF   + +       +   L        I
Sbjct: 56  VYDGFIRFNRITLSNRLRKVVEIKKVGARSYKFDDFLQTLPSPVCMAIFKLDPLKGAALI 115

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
              ++L   +++++LG +  T   L NR  +T+E +L +  +A + A L +  +    + 
Sbjct: 116 AMDSSLAFAIVDSVLGGTSRTALAL-NRLFTTLELRLVEMVLADVLADLEKSWAPLYPAK 174

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSS 216
            +L         +  T       V T+ + + IE    + + ++P  T+           
Sbjct: 175 LSL--LRMEMNPRLVTIVPPEYQVVTMTVKVHIEENVGTMIFVVPIMTIEPIRDKLKEGM 232

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q              + +     + +   +     +L++++ L++G  I       +  +
Sbjct: 233 QFDLMAIDPQWSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDKPCTSELL 292

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +   G   Y    G    N  ++I+D I+  
Sbjct: 293 VKVEGVPKYQGIPGIRHGNKAMQISDIISTK 323


>gi|317013858|gb|ADU81294.1| flagellar motor switch protein FliM [Helicobacter pylori
           Gambia94/24]
          Length = 354

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|15611461|ref|NP_223112.1| flagellar motor switch protein FliM [Helicobacter pylori J99]
 gi|4154924|gb|AAD05972.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
 gi|307637112|gb|ADN79562.1| flagellar motor-switch protein [Helicobacter pylori 908]
 gi|325995703|gb|ADZ51108.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997299|gb|ADZ49507.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 354

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|322379819|ref|ZP_08054116.1| flagellar motor switch protein FliM [Helicobacter suis HS5]
 gi|321147787|gb|EFX42390.1| flagellar motor switch protein FliM [Helicobacter suis HS5]
          Length = 353

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 101/291 (34%), Gaps = 6/291 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +   S+     + L       M   V+I   S     +   + S      F+  S
Sbjct: 49  SKEQLRSFRSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + ++V  +++ LLG       Q+  R  S +E  L    + Q+  +L 
Sbjct: 109 MKPVGGNGILEVNPSIVFPMIDRLLGGKGSAYDQM--REFSDIELNLLDTILKQVMQILK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   E  P ++       +        NE V  + M + I +      L  P  ++ 
Sbjct: 167 EIWSPVTEFYPTIDAKESSANV--VQIVAQNEIVIMVVMEIVIGHSRGMMNLCYPVISIE 224

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +             +V++   +   + TLK+V+ L +G  I
Sbjct: 225 GILSKMGNRDVMLTETSSKKSRNKELQALVGGASVDVAAFLGGVQLTLKEVLDLVVGDTI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                     +++ + KE Y   +G  G   TI+I + I  ++  +K  L 
Sbjct: 285 RLNKVANDVVVVNIDKKERYLATVGYKGYRKTIQIKEVIQTEKDRVKEILE 335


>gi|322378965|ref|ZP_08053379.1| flagellar motor switch protein FliM [Helicobacter suis HS1]
 gi|321148641|gb|EFX43127.1| flagellar motor switch protein FliM [Helicobacter suis HS1]
          Length = 353

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 101/291 (34%), Gaps = 6/291 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +   S+     + L       M   V+I   S     +   + S      F+  S
Sbjct: 49  SKEQLRSFRSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + ++V  +++ LLG       Q+  R  S +E  L    + Q+  +L 
Sbjct: 109 MKPVGGNGVLEVNPSIVFPMIDRLLGGKGSAYDQM--REFSDIELNLLDTILKQVMQILK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S   E  P ++       +        NE V  + M + I +      L  P  ++ 
Sbjct: 167 EIWSPVTEFYPTIDAKESSANV--VQIVAQNEIVIMVVMEIVIGHSRGMMNLCYPVISIE 224

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +             +V++   +   + TLK+V+ L +G  I
Sbjct: 225 GILSKMGNRDVMLTETSSKKSRNKELQALVGGASVDVAAFLGGVQLTLKEVLDLVVGDTI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                     +++ + KE Y   +G  G   TI+I + I  ++  +K  L 
Sbjct: 285 RLNKVANDVVVVNIDKKERYLATVGYKGYRKTIQIKEVIQTEKDRVKEILE 335


>gi|254779108|ref|YP_003057213.1| flagellar motor switch protein FliM [Helicobacter pylori B38]
 gi|308184220|ref|YP_003928353.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180]
 gi|254001019|emb|CAX28963.1| Flagellar motor switch protein FliM [Helicobacter pylori B38]
 gi|308060140|gb|ADO02036.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180]
          Length = 354

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + I 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|210134611|ref|YP_002301050.1| flagellar motor switch protein FliM [Helicobacter pylori P12]
 gi|210132579|gb|ACJ07570.1| flagellar motor switch protein [Helicobacter pylori P12]
          Length = 354

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + I 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|188579889|ref|YP_001923334.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
 gi|179343387|gb|ACB78799.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
          Length = 335

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 105/301 (34%), Gaps = 3/301 (0%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            L AR+    G       + S +            K         S +  +SG+F   + 
Sbjct: 36  DLRARIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHFAASSTFYSLSGVESGRFGEFLD 95

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           ++  N V      + W  +  +G   + + T++E L G+     P    R+ S +E ++A
Sbjct: 96  AYDANAVVGIFHAAEWDGHVLVGLDRDFLYTMVEVLFGSDGSEPPVEDERTFSAIELRIA 155

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +    Q+   L        +++  LE       ++       +         +   N   
Sbjct: 156 QMVFEQVGKALESSFGLVSQTAFRLERTET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 213

Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              LIIPQ  L             +S  +        A +  +  V +   +  +  TL 
Sbjct: 214 EMFLIIPQTVLNPLRPALAKVLTGESAARDPRWAQQIAAEVQKTTVRLRAVLEERHLTLG 273

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           ++  LK+GQV+       T   L  N + ++ C  G+    Y +R+ D IN +++     
Sbjct: 274 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGAYVLRVEDAINPEKEGGHGL 333

Query: 315 L 315
           L
Sbjct: 334 L 334


>gi|157364676|ref|YP_001471443.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO]
 gi|157315280|gb|ABV34379.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO]
          Length = 330

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 101/295 (34%), Gaps = 8/295 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L          K   ++   +   + + +      ++    +I+  S     +   I S 
Sbjct: 37  LYDFRRPSKFSKEHIRVFDMIHENFARSISTYLSGRVRTFTNINLASIDQISYEEFIRSL 96

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
                 +  S   +  +  +  +  +  T+L+ +LG       +   R+ S +E  + ++
Sbjct: 97  PAPSFITVFSAPEFVGSAILEMNLEIFYTILDLILGGPGIPNVK---RTPSDIELSIMRK 153

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
            +  I   L+Q  S   +  P +E     +  +       NE +  +++ +TI       
Sbjct: 154 EVMNILTNLSQAWSEVYQFVPTIE--SVENNPQFVQIAPPNEMILLVSLYVTIAKTEGFL 211

Query: 198 VLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
            +  P                   K E  SE +++   +    + + I   +     ++K
Sbjct: 212 NICWPSSLTEPFMDKLSSRTWFTAKREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVK 271

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +++ L++G VI     +    ++    K  +    G    +  +++T  +  + +
Sbjct: 272 EILDLEVGDVIRLQTHKDDDVMVEVQSKPKFMARPGVFKGHRAVKVTRILKPEVE 326


>gi|15645645|ref|NP_207821.1| flagellar motor switch protein FliM [Helicobacter pylori 26695]
 gi|108562841|ref|YP_627157.1| flagellar motor switch protein FliM [Helicobacter pylori HPAG1]
 gi|2314176|gb|AAD08075.1| flagellar motor switch protein (fliM) [Helicobacter pylori 26695]
 gi|107836614|gb|ABF84483.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
 gi|317009061|gb|ADU79641.1| flagellar motor switch protein FliM [Helicobacter pylori India7]
          Length = 354

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + I 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|163850084|ref|YP_001638127.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           PA1]
 gi|163661689|gb|ABY29056.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           PA1]
          Length = 344

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 3/301 (0%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +  R+    G       + S +            K         S +  +SG+F   + 
Sbjct: 45  DIRTRIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLD 104

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           ++  N V        W  +  +G   + + T++E L G+     P    R+ S +E ++A
Sbjct: 105 AYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIA 164

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +    Q+   L        +++  LE       ++       +         +   N   
Sbjct: 165 QMVFEQVGKALESSFGLVSQTAFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 222

Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              LIIPQ  L             +S  +     +  A +  +  V +   +  +  TL 
Sbjct: 223 EMFLIIPQTVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLG 282

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           ++  LK+GQV+       T   L  N + ++ C  G+   +Y +R+ + IN +++     
Sbjct: 283 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINPEKEGGHGL 342

Query: 315 L 315
           L
Sbjct: 343 L 343


>gi|308182586|ref|YP_003926713.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4]
 gi|308064771|gb|ADO06663.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4]
          Length = 354

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + I 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
 gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
          Length = 359

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 104/277 (37%), Gaps = 5/277 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +   +    +   + + L      +    VD+ Y S     FS    S          S
Sbjct: 51  SREQLRTLQLIHESFARELSTYLSGRSRTFVDVKYASIDQITFSEFQKSLNSPTFIVIFS 110

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
             ++S +  +    +L   +++ LLG    T+ ++  R  + +E  + ++  A +  +L+
Sbjct: 111 SEAFSGSAILQMGLDLGYVIIDRLLGGPGNTLEEI--RPPTEIEMNILRKESAVMLRMLS 168

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  S  +E   NLE+       +       NE    I +++TI+NV     L  P  +L 
Sbjct: 169 KSWSNIEEFDANLENLET--NPQFVQVAPPNEMTILITLSVTIKNVQGFVNLCFPSSSLE 226

Query: 208 KTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                  +     S   +E+  +   +      +N+   +   +  L D + L++G VI 
Sbjct: 227 PLNDKLTTRMWTTSYRHTEEFKENLRQSLLLSKLNLSAILGKTEIYLNDFLNLEVGDVIR 286

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                     L    + I+   +G+    Y+++I ++
Sbjct: 287 LDSFYDEPIDLEIEERPIFKVNVGKSKGFYSVKIVEK 323


>gi|322421724|ref|YP_004200947.1| flagellar motor switch protein FliM [Geobacter sp. M18]
 gi|320128111|gb|ADW15671.1| flagellar motor switch protein FliM [Geobacter sp. M18]
          Length = 325

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 95/284 (33%), Gaps = 3/284 (1%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           +          +   + ++       ++   VDI        KF   +         +  
Sbjct: 44  EAHRAIPNLDIVYDGFIRYNRVTMSNRLGRMVDIKKEEAVPYKFGDFLSVLPSPVCMAIY 103

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
            +        I   + LV T+++++LG S     Q  NR  +++E +L ++ +    A L
Sbjct: 104 KMDPLKGAALIAFDSTLVFTIVDSILGGSGVPSGQGMNRLFTSIELRLVEKIVKDALADL 163

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            +  +    +S NL         +      +   V T++M + IE    S +L IP  T+
Sbjct: 164 EKAWAPLCPASMNLLRLEM--NPRLVNIVPAEYQVVTMSMKIQIEETVGSMILAIPFLTI 221

Query: 207 LKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                      Q              + +     ++I   +     +L D++ L  G VI
Sbjct: 222 EPIRDKLKRGVQMDMMVMDPLWSYRLSEELMGAPMDISVEMGGATVSLADLLGLTPGDVI 281

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 K    +   G + +    G  G N  ++IT  +   + 
Sbjct: 282 MLDSSGKDELSVKVGGTKKFMGIAGVSGGNKAVQITRALTGGED 325


>gi|213646780|ref|ZP_03376833.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 293

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 83/271 (30%), Gaps = 8/271 (2%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  D   R+     + 
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +          L  ++ LK G V+P    ++
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKPDR 291


>gi|315453793|ref|YP_004074063.1| flagellar motor switch protein [Helicobacter felis ATCC 49179]
 gi|315132845|emb|CBY83473.1| flagellar motor switch protein [Helicobacter felis ATCC 49179]
          Length = 353

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 100/291 (34%), Gaps = 6/291 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +   S+     + L       M   V+I   S     +   + S      F+  S
Sbjct: 49  SKEQLRSFRSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +  + ++V  +++ LLG    +  Q   R  S +E  L    + Q+  +L 
Sbjct: 109 MKPVGGTGVLEVNPSIVFPMIDRLLGGKGSSYDQT--REFSDIELNLLDTILKQVMQILK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
              +   E  P ++       +        NE V  + M + I +      L  P  ++ 
Sbjct: 167 DIWNPVTEFFPTIDAKESSANV--VQIVAQNEIVIMVVMEIVIGHSRGMMNLCYPVISIE 224

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +             +V++   +   + TLK+V+ L +G  I
Sbjct: 225 GILSKMGNRDVMLTETSSKKSRNKELQALVGGASVDVSAFLGSVRLTLKEVLDLVVGDTI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                     +++ + KE Y   +G  G   TI+I + I+ ++  +K  L 
Sbjct: 285 RLNKVANDTVVVNIDKKERYLATVGYQGYRKTIKIKEVIHTEKDRVKEVLE 335


>gi|297379637|gb|ADI34524.1| flagellar motor switch protein FliM [Helicobacter pylori v225d]
          Length = 354

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIVPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|317177228|dbj|BAJ55017.1| flagellar motor switch protein FliM [Helicobacter pylori F16]
          Length = 354

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 103/312 (33%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P H + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQHSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  +R  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|317010690|gb|ADU84437.1| flagellar motor switch protein FliM [Helicobacter pylori
           SouthAfrica7]
          Length = 354

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|197120188|ref|YP_002140615.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem]
 gi|197089548|gb|ACH40819.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem]
          Length = 325

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 93/284 (32%), Gaps = 4/284 (1%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           +          +   + ++       ++   VDI        KF   +         +  
Sbjct: 44  EAHRAIPNLDIVYDGFIRYNRVTMSNRLGRMVDIKKEEAVPYKFGDFLSVLPNPVCMAIY 103

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
            +        I     LV T+++++LG S     Q  NR  +++E +L ++ +    A L
Sbjct: 104 KMDPLKGAALIAFDATLVFTIVDSILGGSGVQP-QGMNRLFTSIELRLVEKIVKDALADL 162

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            +  +    +S NL         +          V T++M + IE    S +L IP  T+
Sbjct: 163 EKAWAPLCPASMNLLRLEM--NPRLVNIVPPEYQVVTMSMKIQIEETVGSMILAIPFLTI 220

Query: 207 LKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                      Q              + +     +++   +     +L D++ L  G  I
Sbjct: 221 EPIRDKLKRGVQMDMMAVDPFWSYRLSEELMGAPMDLSVEMGGATISLSDLLHLTPGDTI 280

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 K    +   G + +    G  G N  ++IT  +N   +
Sbjct: 281 MLEASGKDELTVKVGGTKKFMGIAGVSGGNKAVQITRALNAGGE 324


>gi|317180688|dbj|BAJ58474.1| flagellar motor switch protein FliM [Helicobacter pylori F32]
          Length = 354

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  +R  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKEHTKEILEM 336


>gi|159184367|ref|NP_353588.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58]
 gi|159139681|gb|AAK86373.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58]
          Length = 319

 Score =  212 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   LLA+LTG L D+KTI KI + +G+LY +FLP  F  +  + +D+ Y   +SG  + 
Sbjct: 14  IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 73

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +  +N   +  SL +W  NF +   N  VI L+E +LGAS ++I     R+LS +E 
Sbjct: 74  LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 133

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA   + +I+ VL   ++        ++  ++ +        ++  +  TI M + I  
Sbjct: 134 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 193

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V+S F LI+PQ  LLKT++++  +  ++  + E+ +D  +++  +  V ++ RI L+  T
Sbjct: 194 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 253

Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           L+ +  L  G VIPF    ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + 
Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313

Query: 311 LKNFL 315
           L++ +
Sbjct: 314 LRHLM 318


>gi|240137217|ref|YP_002961686.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
           AM1]
 gi|240007183|gb|ACS38409.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
           AM1]
          Length = 344

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 3/301 (0%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +  R+    G       + S +            K         S +  +SG+F   + 
Sbjct: 45  DIRTRIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLD 104

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           ++  N V        W  +  +G   + + T++E L G+     P    R+ S +E ++A
Sbjct: 105 AYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIA 164

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +    Q+   L        +++  LE       ++       +         +   N   
Sbjct: 165 QMVFEQVGKALESSFGLVSQTAFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 222

Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              LIIPQ  L             +S  +     +  A +  +  V +   +  +  TL 
Sbjct: 223 EMFLIIPQTVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLG 282

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           ++  LK+GQV+       T   L  N + ++ C  G+   +Y +R+ + IN +++     
Sbjct: 283 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINPEKEGGHGL 342

Query: 315 L 315
           L
Sbjct: 343 L 343


>gi|218528687|ref|YP_002419503.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|254559229|ref|YP_003066324.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           DM4]
 gi|218520990|gb|ACK81575.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|254266507|emb|CAX22271.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
           DM4]
          Length = 340

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 3/301 (0%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +  R+    G       + S +            K         S +  +SG+F   + 
Sbjct: 41  DIRTRIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLD 100

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           ++  N V        W  +  +G   + + T++E L G+     P    R+ S +E ++A
Sbjct: 101 AYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIA 160

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +    Q+   L        +++  LE       ++       +         +   N   
Sbjct: 161 QMVFEQVGKALESSFGLVSQTAFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 218

Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              LIIPQ  L             +S  +     +  A +  +  V +   +  +  TL 
Sbjct: 219 EMFLIIPQTVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLG 278

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           ++  LK+GQV+       T   L  N + ++ C  G+   +Y +R+ + IN +++     
Sbjct: 279 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINPEKEGGHGL 338

Query: 315 L 315
           L
Sbjct: 339 L 339


>gi|222053613|ref|YP_002535975.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32]
 gi|221562902|gb|ACM18874.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32]
          Length = 328

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 89/267 (33%), Gaps = 3/267 (1%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +   + ++       ++   V+I     +  KF   + S       +   +        I
Sbjct: 56  IYDGFIRYNRVNMSNRLGKMVEIKKVGARPYKFDDFLQSLPSPVCMAIYKIEPLKGAALI 115

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
              +  V T+++++LG          NR  + +E +L ++ I  + A + +  +      
Sbjct: 116 AVDSTFVYTVVDSILGGVGVPNIPANNRLFTPIELRLVEKIIRDVLADMEKAWAPLLAVK 175

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS- 216
            NL         +          V T+++ + IE    S +L +P  T+        S  
Sbjct: 176 MNL--LRMEMNPRLVNIVPPEYQVVTMSLKIQIEETVGSMILAVPYMTVDPIRDKLKSGL 233

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q              + +  +  + I   +     TL +++ L  G  +      +   +
Sbjct: 234 QVDMMAVDPQWSIRLSEELKEAPLEISVEMGNSSITLAELLNLSPGDTVMLEESGRNELL 293

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDR 303
           +   G + +    G  G N  ++I+  
Sbjct: 294 VKVGGVKKFMGLPGVRGGNKAVQISRI 320


>gi|188527225|ref|YP_001909912.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470]
 gi|188143465|gb|ACD47882.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470]
 gi|308061768|gb|ADO03656.1| flagellar motor switch protein FliM [Helicobacter pylori Cuz20]
 gi|308063277|gb|ADO05164.1| flagellar motor switch protein FliM [Helicobacter pylori Sat464]
          Length = 354

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|20141429|sp|Q44457|FLIM_AGRT5 RecName: Full=Flagellar motor switch protein FliM
          Length = 321

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   LLA+LTG L D+KTI KI + +G+LY +FLP  F  +  + +D+ Y   +SG  + 
Sbjct: 16  IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +  +N   +  SL +W  NF +   N  VI L+E +LGAS ++I     R+LS +E 
Sbjct: 76  LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA   + +I+ VL   ++        ++  ++ +        ++  +  TI M + I  
Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V+S F LI+PQ  LLKT++++  +  ++  + E+ +D  +++  +  V ++ RI L+  T
Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255

Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           L+ +  L  G VIPF    ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + 
Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315

Query: 311 LKNFL 315
           L++ +
Sbjct: 316 LRHLM 320


>gi|1480838|gb|AAC45322.1| FliM [Agrobacterium tumefaciens]
 gi|2459705|gb|AAB71781.1| FliM [Agrobacterium tumefaciens]
          Length = 321

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   LLA+LTG L D+KTI KI + +G+LY +FLP  F  +  + +D+ Y   +SG  + 
Sbjct: 16  IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +  +N   +  SL +W  NF +   N  VI L+E +LGAS ++I     R+LS +E 
Sbjct: 76  LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA   + +I+ VL   ++        ++  ++ +        ++  +  TI M + I  
Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPCGFVATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V+S F LI+PQ  LLKT++++  +  ++  + E+ +D  +++  +  V ++ RI L+  T
Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255

Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           L+ +  L  G VIPF    ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + 
Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315

Query: 311 LKNFL 315
           L++ +
Sbjct: 316 LRHLM 320


>gi|261837849|gb|ACX97615.1| flagellar motor switch protein [Helicobacter pylori 51]
 gi|261839264|gb|ACX99029.1| flagellar motor switch protein FliM [Helicobacter pylori 52]
 gi|317181758|dbj|BAJ59542.1| flagellar motor switch protein FliM [Helicobacter pylori F57]
          Length = 354

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  +R  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|332673263|gb|AEE70080.1| flagellar motor switch protein FliM [Helicobacter pylori 83]
          Length = 354

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRNVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  +R  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
 gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
          Length = 327

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 91/284 (32%), Gaps = 7/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    L   + + L       +  ++ ++ +      F   I S     +    +
Sbjct: 47  SKEQLRTLQLLHENWARILSGFLSGYLRTNISVTVSGVDQLTFDDFIRSLPAPTLLIIFT 106

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L        +  + + +  +++ L G   E   ++  R  + +E  + ++   ++   L+
Sbjct: 107 LEPLPGAAVMETNPSFLFPVIDLLFGGPGEMPEKI--REFTEIEVSVGRKLAEKLLENLS 164

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETL 206
                  + +P +E        +       +E V  I +  ++         L  P   L
Sbjct: 165 FAWRDVFKVTPAVEGVET--NPRLQQIISPSEVVAVITLTTSVGTESRGLINLCFPHMML 222

Query: 207 LKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                          SE               ++ V +   +   + ++++ + L++G V
Sbjct: 223 EPVLSQLSRFYHMRPSEPPDASATRNLRYWLEKVPVEVSVVVGETRLSVQEFLDLEVGDV 282

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +    R      +     + Y  + G +G++  ++IT      +
Sbjct: 283 LVLDRRFGEDLDVYVGKIKRYRAQPGLLGRHLAVQITGLAEGGE 326


>gi|217033289|ref|ZP_03438720.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10]
 gi|216944230|gb|EEC23655.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10]
 gi|317179190|dbj|BAJ56978.1| flagellar motor switch protein FliM [Helicobacter pylori F30]
          Length = 354

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  +R  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKERTKEILEM 336


>gi|57241942|ref|ZP_00369882.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           RM3195]
 gi|315638332|ref|ZP_07893512.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           JV21]
 gi|57017134|gb|EAL53915.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           RM3195]
 gi|315481599|gb|EFU72223.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           JV21]
          Length = 360

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +     + L       M   V+    S     +   + S      F+  S
Sbjct: 50  SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + ++   +++ LLG   ++     +R L+ +E  L    +  I   L 
Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  ST  E  P++E       +        NE +  + M + I N +    +  P   L 
Sbjct: 168 ESWSTVTEIYPSIEAKESSPNV--VQIVSQNEIIIMVVMEIIIGNSSGMVNICYPVVHLE 225

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +        +  +           +  V  +  +      + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVNEFLELKQGDIL 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    A++S + K+++  ++G      +I+I + I  D+  +K  L K
Sbjct: 286 RLDREADDKAVVSIDKKDVFLAQIGLHRFRKSIKIIELIRTDKDEIKEILEK 337


>gi|315586408|gb|ADU40789.1| flagellar motor switch protein FliM [Helicobacter pylori 35A]
          Length = 354

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 103/312 (33%), Gaps = 6/312 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  +R  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       +        NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + I +      +  P  ++        S        N  +            ++V++   
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           + + + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGVVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLHK 317
            +++  K  L  
Sbjct: 325 SEKEHTKEILEM 336


>gi|323341356|ref|ZP_08081600.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC
           25644]
 gi|323091233|gb|EFZ33861.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC
           25644]
          Length = 336

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 94/309 (30%), Gaps = 15/309 (4%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
                       RL       K        +   + K    +   ++  +V +   + + 
Sbjct: 35  PKVREYDFRRPTRL------SKEYINTLHMIFEDFSKMTGNVLSTQLRTNVSVDLAAIEQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR-- 125
             +   +HS     +           +  +  +  L   ++E L G           +  
Sbjct: 89  ISYDEFMHSIPRVTLLGMFHSEPLKGSQLLEINPQLCSLMVELLCGGLDVRTQHPDEKIP 148

Query: 126 ---SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
              S S ++  L +    +I  V         E +   +        + +     NE V 
Sbjct: 149 SIESFSDIDLALMRELFKEIVNVYKTSWKDIVELNSKFDTIDT--NPQLSQAMSPNEPVV 206

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNV 240
            +   + +  +++   L IP              +  + S + +ED      R    + +
Sbjct: 207 LVTFTVKVFGISTFINLCIPYVFFEGILDKLSIRNWFDSSSDDNEDDSLEIKRGLNNVEM 266

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            I+T++   + +  D + L+ G VI    +  +       G+  +  + G+      I +
Sbjct: 267 VIETKLGDAQMSFADFLNLEAGDVIRLDKKTTSPLETYIEGEPFFYVKPGQKDGQLAIEL 326

Query: 301 TDRINFDQK 309
            D++  ++ 
Sbjct: 327 LDKMEGEED 335


>gi|253702497|ref|YP_003023686.1| flagellar motor switch protein FliM [Geobacter sp. M21]
 gi|251777347|gb|ACT19928.1| flagellar motor switch protein FliM [Geobacter sp. M21]
          Length = 325

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 4/284 (1%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           +          +   + ++       ++   VDI        KF   +         +  
Sbjct: 44  EAHRAIPNLDIVYDGFIRYNRVTMSNRLGRMVDIKKEEAVPYKFGDFLSVLPNPVCMAIY 103

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
            +        I     LV T+++++LG S     Q  NR  +++E +L ++ +    A L
Sbjct: 104 KMDPLKGAALIAFDATLVFTIVDSILGGSGVQP-QGMNRLFTSIELRLVEKIVKDALADL 162

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            +  +    ++ NL         +          V T++M + IE    S +L IP  T+
Sbjct: 163 ERAWAPLCPATMNLLRLEM--NPRLVNIVPPEYQVVTMSMKIQIEETVGSMILAIPFLTI 220

Query: 207 LKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                      Q              + +     +++   +     +L D++ L  G  I
Sbjct: 221 EPIRDKLKRGVQMDMMAVDPLWSYRLSEELMGAPMDLSVEMGGATISLSDLLHLTPGDTI 280

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 K    +   G + +    G  G N  ++IT  +    +
Sbjct: 281 MLEASGKDELTVKVGGTKKFMGIAGVSGGNKAVQITRALTAGGE 324


>gi|32474773|ref|NP_867767.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1]
 gi|32445313|emb|CAD75314.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1]
          Length = 428

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 80/282 (28%), Gaps = 6/282 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K   +   SL     +         +   +++   S     +S  + S      F+    
Sbjct: 89  KDQMRAMHSLHESIARNFGASISGLLRTMIEVKLLSVDQLTYSEFVFSLDNPSCFNVIKP 148

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                ++ +  +  L   +++ +LG       +   R L+ +E +L  R +      +  
Sbjct: 149 LPLEGHWVLDIAPGLAYAIIDRMLGGDPV-PGETIRRPLTEIETRLMCRVVELFLEQIVP 207

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 +  P++         +       NE    +   + +        L IP  ++ K
Sbjct: 208 AWENVIQLEPSIHT--TESNPQLAQIVPPNEVAILVGFEVLLGKNRGMMNLCIPFNSIEK 265

Query: 209 TTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                           N +       A       V++   +   K    D++ L +G +I
Sbjct: 266 YNAKLSRNGWVGYGKTNPTPQSRRKIADSIDAAPVDVVVTLARSKIRTSDLLDLNVGDII 325

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                  +   LS      ++   G       +++   +   
Sbjct: 326 TTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQSTVEPK 367


>gi|85058024|ref|YP_453726.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
           'morsitans']
 gi|84778544|dbj|BAE73321.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
           'morsitans']
          Length = 340

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 83/304 (27%), Gaps = 13/304 (4%)

Query: 11  SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
           SP       R  G         K    +   +           M    DIS  +     +
Sbjct: 43  SPFDAAQRRRQGG------ERLKGLEMINQDFAGRFRSALFILMQRRTDISAEAILIQPY 96

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
                  +     +   L     N     +  L+ T L+ L G S         R+ +  
Sbjct: 97  REFAAQLRPPASLNLIDLKPLRGNTLFAFTPGLIFTTLDTLFGGSGRLPDAQE-RAFTPA 155

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           E+++  R +  +               P        +   + T     E V      + I
Sbjct: 156 EQRVIDRLLKLMLQAYGDAWLGLHPLEPEFI---TAETSCRFTGFSDGEMVVISPFRVAI 212

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE-DLIDPFARKTYQLNVNIDTRINLK 249
             +   F ++  Q  L     I      +   Q +       AR+     + +  R    
Sbjct: 213 GAMQGEFAIVFSQAALEPLYEILSKPLPEHIRQDQGHWRQNLARQLQGTELELVARFADL 272

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              L  V+ L+ G ++P             +G  ++    G +   Y +R+   IN    
Sbjct: 273 PLCLSRVMELRRGDILPIPRP--DRLTACVDGVPVFLGNYGSLNGRYALRVEHVINQGID 330

Query: 310 SLKN 313
            L N
Sbjct: 331 QLNN 334


>gi|237751752|ref|ZP_04582232.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879]
 gi|229373118|gb|EEO23509.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879]
          Length = 356

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 100/292 (34%), Gaps = 6/292 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +   +   S+     + L       M   V+I   S     +   + S      F+  S
Sbjct: 49  SREQLRSFRSIHDKMARNLSNQISAIMRSIVEIQLHSVDQMTYGEFLMSLPTPTSFNVFS 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +  + ++   +++ LLG   +       R  S +E  L    + QI   L 
Sbjct: 109 MKPMDGAGVLEINPSIAFPMIDRLLGGRGDQYD--DTREFSNIELNLLDTILRQIMQNLK 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +   E  P+++       +        NE V  + M + I + +    +  P  +L 
Sbjct: 167 ESWAAVAEIFPSIDAKESSPNV--VQIVAQNEVVVMVVMEIVIGHSSGMMNICYPVISLE 224

Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  S        +  +             +V+I   +   + + K+++ LK+G VI
Sbjct: 225 TILSRLASRDLMMSETSGKKSRNRELQALIGGADVHIAAMLGGTQLSFKEILELKVGDVI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                      +S +G++ Y  ++G      TI+I D I  ++  +K  +  
Sbjct: 285 MLDRVADDTVHVSIDGRDKYRAKIGLQRFRKTIQILDEIKTEKDQVKEMIEM 336


>gi|330902572|gb|EGH33587.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 244

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 80/242 (33%), Gaps = 4/242 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
                 +   + ++        +    D++    Q  KF   +HS       + A +   
Sbjct: 1   MPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPL 60

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
                      LV  L++N  G       ++  R  +  E ++ +  + Q    L +   
Sbjct: 61  RGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQ 119

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
              E +   E                +E V     ++ ++       + +P   +     
Sbjct: 120 AIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIRE 177

Query: 212 ISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +  +  Q+  ++Q E  ++        +NV + T I  ++  L+D++ ++ G VIP    
Sbjct: 178 MLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELS 237

Query: 271 EK 272
           + 
Sbjct: 238 DS 239


>gi|327540553|gb|EGF27130.1| flagellar motor switch protein fliM [Rhodopirellula baltica WH47]
          Length = 428

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 80/282 (28%), Gaps = 6/282 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K   +   SL     +         +   +++   S     +S  + S      F+    
Sbjct: 89  KDQMRAMHSLHESIARNFGASISGLLRTMIEVKLLSVDQLTYSEFVFSLDNPSCFNVIKP 148

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                ++ +  +  L   +++ +LG       +   R L+ +E +L  R +      +  
Sbjct: 149 LPLEGHWVLDIAPGLAYAIIDRMLGGDPV-PGETIRRPLTEIETRLMCRVVELFLEQIVP 207

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 +  P++         +       NE    +   + +        L IP  ++ K
Sbjct: 208 AWENVIQLEPSIHT--TESNPQLAQIVPPNEVAILVGFEVLLGKNRGMMNLCIPFNSIEK 265

Query: 209 TTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                           N +       A       V++   +   K    D++ L +G +I
Sbjct: 266 YNAKLSRNGWVGYGKTNPTPQSRRKIADSIDAAPVDVVVTLARSKIRTSDLLDLNVGDII 325

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                  +   LS      ++   G       +++   +   
Sbjct: 326 TTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQSTVEPK 367


>gi|313681608|ref|YP_004059346.1| flagellar motor switch protein flim [Sulfuricurvum kujiense DSM
           16994]
 gi|313154468|gb|ADR33146.1| flagellar motor switch protein FliM [Sulfuricurvum kujiense DSM
           16994]
          Length = 364

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 106/314 (33%), Gaps = 6/314 (1%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++  ++  P   I L          K   +    +     + +       M   V+I   
Sbjct: 26  ETTEESLYPQRQITLYDFKRPNRVSKEQLRAFRGIHDKMARSIASQISAIMRSIVEIQLH 85

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S     +   + S      F+  S+     N  +  + ++   +L+ +LG   E      
Sbjct: 86  SVDQMTYGEFLMSLPNPTSFNVFSMKPLEGNGVLEINPSIAFPMLDRILGGKGEPFE--A 143

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
           NR  S +E  L +  +  +   L +      +  P +E       +        NE V  
Sbjct: 144 NREFSDIELSLFETILRVMMGTLREAWGPVTDLYPQVESKESSPNV--VQIVAQNEIVVM 201

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVN 241
           + M + I + +    +  P   L        S        +  +             +VN
Sbjct: 202 VVMEIIIGHSSGMMNICYPVIALEPVLPKLASRDLMLNETSSKKSRNQELQVLLGGAHVN 261

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           ++  +   + +L +++ L  G +I           +S +GK+ +  ++G      +I+IT
Sbjct: 262 VEVNLGEAELSLHELLELGEGDIIRLNIPADDVVNVSVDGKDRFVGQMGLRRFRKSIQIT 321

Query: 302 DRINFDQKSLKNFL 315
             I+ ++ ++K  L
Sbjct: 322 SLIDTEKDAVKRAL 335


>gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
           DSM 14796]
 gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
           DSM 14796]
          Length = 323

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 104/289 (35%), Gaps = 6/289 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    +   +    +   Y + +       +   + + +++     +   I+S   
Sbjct: 39  DFKRPSKFSRDHLRTLELIHETYGRLVATSLSSLVRGSMRLDFSAIDQVPYEEFINSLIP 98

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             +    S  +   +  +  + N+ + L++ LLG S    P    R+ + +E  L  + +
Sbjct: 99  PAMIVIISWENTGLSMVLEMNLNITLALVDRLLGGSGLPPPSP--RAPTDIENALIAKLV 156

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
            +    L +   T    S            +      +NE V  I M++ I +++    L
Sbjct: 157 DRHLVALEEAWRTVYPVSLTFVGTET--NPEFAQIVPANEMVVLITMDIGIGDLSGIMSL 214

Query: 200 IIPQETLLKTTLISLSSQN--KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
            IP   L        + +   K + +++   +   +    + VN+   +      L+D++
Sbjct: 215 AIPYSLLEPIVNHLSAQRFFVKKKAENDIEREYVYQHVLNVMVNLQVCLGHMHIPLRDLI 274

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            L++G  +    +      +    K+ +    GRVGKN  I+IT+ +  
Sbjct: 275 NLRVGDTLLLDTKVDKPLDVKIEKKQKFLGVPGRVGKNLAIKITEVLRE 323


>gi|330880582|gb|EGH14731.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 242

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 84/243 (34%), Gaps = 6/243 (2%)

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              Q  KF   +HS       + A +              LV  L++N  G       ++
Sbjct: 2   GGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKI 60

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E ++ +  + Q    L +      E +   E                +E   
Sbjct: 61  EGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAGV 118

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVN 241
               ++ ++       + +P   +     +  +  Q+  ++Q E  I+        +NV 
Sbjct: 119 ISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWINALKEDVLDVNVP 178

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           + T I  ++  L+D++ ++ G VIP         ++ ANG   +  +LG       +++ 
Sbjct: 179 LTTTIAQRQLPLRDILHMRPGDVIPVEL--SESLVMRANGVPSFKVKLGSHKGKMALQVI 236

Query: 302 DRI 304
           + I
Sbjct: 237 EPI 239


>gi|78485773|ref|YP_391698.1| flagellar motor switch protein FliM [Thiomicrospira crunogena
           XCL-2]
 gi|78364059|gb|ABB42024.1| flagellar motor switch protein FliM [Thiomicrospira crunogena
           XCL-2]
          Length = 339

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 32/323 (9%), Positives = 103/323 (31%), Gaps = 11/323 (3%)

Query: 1   MRGQSIH---KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57
           M G  +     N +      +   T +    +        +   + +   + F E +   
Sbjct: 17  MGGGDVDTEGDNPAEGTSAKVYDFTNQERIVRGRLPALDIINERFARGFQRHFNEMIMSS 76

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+++    +  K    + +       +   ++  +        + L+ T ++   G +  
Sbjct: 77  VEVTAGEVKIIKMIDYLRNLFVPTSLNIYRINPLNGVSLFTLDSKLIFTAVDMYFGGTGL 136

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
              ++  R  + VE  + +  +   S  L +  +   +    ++  +     K  +   +
Sbjct: 137 LPFKIEGREYTPVEMSMVRSILDMSSDNLRKAWAPVMDIE--IDYMHSEMNPKFASIVDA 194

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTY 236
            + +    +N+  E V     +++P   L           +                +T 
Sbjct: 195 TDMIVVSPINVRFEGVEGRVDIVMPYAMLEPVRDKLEEGMSNLQGESDNRWSRTLKEETK 254

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + + +   +   + ++ D++ ++ G +IP          + A G  +   ++G      
Sbjct: 255 NIEIELAVNLLELQMSMDDLMKMEKGDIIPIEMP--ELVTVKAEGIGVLKGKVGESRDRK 312

Query: 297 TIRITDRINF---DQKSLKNFLH 316
            ++I   +      ++ ++N   
Sbjct: 313 AVKIEQILRHPAYQERMVENVKE 335


>gi|297569682|ref|YP_003691026.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925597|gb|ADH86407.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 330

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 88/286 (30%), Gaps = 3/286 (1%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
             T +    +T      ++   + + +       +   +D++    +  +F   + +   
Sbjct: 41  DFTRQQRIVQTRMPAMDAISDAFMRSMRNSLASALRRILDVTAVPMELERFGAFVRTLPV 100

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
                   ++ +  +  I     LV  L+E+ LG S     ++  R  + +E++L +R +
Sbjct: 101 PSSLQIFKMAPFRGHALIVLEPRLVFNLVESFLGGSGSRNVRIEGRDFTAIEQRLIRRVV 160

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             +   + +   + Q               +        + V      + ++    S   
Sbjct: 161 NLLLTDMEKAWYSLQPLKVQYVR--SEINPQFAKICQPEDVVIINRYEVDMDRAVGSITT 218

Query: 200 IIPQETLLKTTL-ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
            IP   L      +  + Q +   +   +            V     +       ++++ 
Sbjct: 219 CIPMSNLESVRNRLMTTFQREQSEEDIAIQRTITENIKNAEVEFKVELGRTTVPAREIIN 278

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           L++G  +    R      +    K  Y    G   KN  + I  ++
Sbjct: 279 LQVGDTLTLDRRTDEQLPVFVASKRKYMATPGVHRKNNAVLIKKKV 324


>gi|114765265|ref|ZP_01444397.1| Flagellar motor switch protein fliM [Pelagibaca bermudensis
           HTCC2601]
 gi|114542400|gb|EAU45428.1| Flagellar motor switch protein fliM [Roseovarius sp. HTCC2601]
          Length = 313

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 94/313 (30%), Gaps = 4/313 (1%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S  +  +P    +   +  +         +   +   +   L +  K  +    ++S   
Sbjct: 2   STARTLTPDTRAVEELIVERAKLSYARLPMLEVVFDRFSLSLAQTLKSYLGAMAEVSLGG 61

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
                    +    +  + S  +   W        +  L+  ++E   G       +   
Sbjct: 62  IDYLSCQDALKDQPDPSLISVTTAEEWGGTIAAIMTPELLFGIIEITFGGRTVATGEKKT 121

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R+ +++EK++ +     +   L+   +     + ++         K              
Sbjct: 122 RNFTSIEKRIGQNFTETVLTELSNAFAKVTPVNFDISHLET--NPKALLLAPPTSACVRA 179

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNID 243
            + + IE      V ++P     K + I                           NV + 
Sbjct: 180 RLTIDIEGRIGEMVFVLPNTAFEKVSHILSQQFTGGQLGGDSGWRLKMTDMLGSTNVPMS 239

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG-RVGKNYTIRITD 302
             +      ++DV+    GQV+    +      L   GKEI   E+G R      +++++
Sbjct: 240 AVMGQAVLPMRDVLAWAPGQVLDLGIQVDDPVTLCCAGKEIARAEVGHRKNGRIALKLSE 299

Query: 303 RINFDQKSLKNFL 315
           ++  ++ S  +  
Sbjct: 300 KLYEEKDSPDDLR 312


>gi|170748130|ref|YP_001754390.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654652|gb|ACB23707.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
           JCM 2831]
          Length = 309

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 110/303 (36%), Gaps = 3/303 (0%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +  RL    G       +   +      F     +      V  S ++ +S +F  I+ 
Sbjct: 9   DIRDRLLDAAGLSLERLPMLHVILDRVATFCADQLRHFAASPVYFSLSNVESQRFGDILE 68

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
            ++ N +        W S+  +G   + + T++E LLG+     P    RS S +E ++A
Sbjct: 69  PYESNAIAGIFQAPEWDSHILVGFDRDFIFTMVEVLLGSDGSEPPLDEERSFSNIEMRIA 128

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +R   Q+   +    +   ++   LE       +        N         +   N   
Sbjct: 129 QRLFEQVGRAVQSAFALVADTPFKLER--TELRMDFAVIGRRNNQAVAAKFLLQALNRGG 186

Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              ++IPQ  L             ++  +        A +  +  V +   +  K   L 
Sbjct: 187 EMFIVIPQSVLNPMRQSLARILVGETSARDSRWTRQIAGEVQKTPVTLKAILEEKPLALG 246

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           ++  L +GQV+      ++   L  N ++++ C++G+      +R+   I+ DQ+ + + 
Sbjct: 247 EIADLAVGQVLELRATPRSRVKLVGNDRDLFWCDVGQEDGAIVLRVDHFIDQDQEFIDDV 306

Query: 315 LHK 317
           L +
Sbjct: 307 LAR 309


>gi|300680950|sp|P0CG26|FLIM_CAUCR RecName: Full=Flagellar motor switch protein FliM
 gi|144253|gb|AAA62449.1| FliM [Caulobacter crescentus CB15]
          Length = 373

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 101/303 (33%), Gaps = 4/303 (1%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
               +  +            +   +     + +    +     +V++S  +  S +F   
Sbjct: 72  DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 131

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEK 132
           ++S     + +        +   +   +NL+ ++++ LLG        ++  R  +T+E+
Sbjct: 132 LNSIPLPGILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 191

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +R I  +   L          S +L+                      + + + +E+
Sbjct: 192 VLVQRMIDVVLHDLKSAFEPLHPVSFSLDRLET--NPPFAAIARPANAAILVKLRIDMED 249

Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 L++P  TL     ++      +   +        A + +   + +   ++ ++ 
Sbjct: 250 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQV 309

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
            L  V+ +++G  +      +     +     +    +GR   +  +R    ++  +K++
Sbjct: 310 PLSRVLNMQVGDTLMLNATSRQPGGAARRRIPLTRGRMGRRNHSIAVRAEAPVDRRKKAV 369

Query: 312 KNF 314
           +  
Sbjct: 370 QKL 372


>gi|94264049|ref|ZP_01287849.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
           switch protein FliM [delta proteobacterium MLMS-1]
 gi|93455560|gb|EAT05747.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
           switch protein FliM [delta proteobacterium MLMS-1]
          Length = 330

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 97/309 (31%), Gaps = 7/309 (2%)

Query: 1   MRGQSIHKNTSPLHPILLA----RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL 56
           + G  I +    +    L       T +    +       ++   + + +       +  
Sbjct: 18  ISGGDIDEPEEAVDAESLGYTPYDFTRQQRIVQVKMPAMDAISDTFMRSVRTSLSAALRR 77

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
            +DI+    +  +F   + +           ++ +  +  I     LV TL+E+ LG S 
Sbjct: 78  ILDITAAPMEMERFGAFVRTLPVPSSLQVFKMAPFRGHALIVLEPKLVFTLVESFLGGSG 137

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
               ++  R  + +E++L +R +  +   L +   + Q               +      
Sbjct: 138 ARNVRVEGRDFTAIEQRLIRRVVNLLLTDLEKAWYSLQPLKVQYVR--SEINPQFAKICQ 195

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKT 235
             + V     ++ ++  A S    IP   L       + + Q +   +   +        
Sbjct: 196 PEDVVVINRYDVDMDRAAGSITTCIPLANLESVKSKLMTTFQREQSEEDIAIQRTIVDNI 255

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
               V+I   +   K    D++ L +G  I    R +    +   G   Y    G    N
Sbjct: 256 KNAEVDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQLPVYVAGMRKYMATPGVHRNN 315

Query: 296 YTIRITDRI 304
             + I  ++
Sbjct: 316 NAVLIKRKV 324


>gi|162147486|ref|YP_001601947.1| flagellar motor switch protein FliM [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545593|ref|YP_002277822.1| flagellar motor switch protein FliM [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786063|emb|CAP55645.1| putative flagellar motor switch protein fliM [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533270|gb|ACI53207.1| flagellar motor switch protein FliM [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 395

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 101/291 (34%), Gaps = 6/291 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R+            +   +     + L    +   + +V+I+    +S  F   +++ 
Sbjct: 81  LERVIKAGFVAYERLPMLEIVFDRLVRMLSSTLRSFTNDNVEITIDGMRSMSFGDYMNAV 140

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAK 136
             + +F+      W +   I   + L  ++++ L+G         +  R  + +E+ L +
Sbjct: 141 PSSSLFAVFKAVQWENYGLIVIDSALSYSIIDILMGGPRGVGYAGVEARPHTAIERALIE 200

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
           + +      L+   +         E        +      ++  V    +++ +E+ + S
Sbjct: 201 KLVTLTLNDLSTAFNPVCTIDLTFERLEV--SARFAAIARASNAVVMTKLHIDMEDRSGS 258

Query: 197 FVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             LIIP  TL             +   +          +  + ++ +      K   L +
Sbjct: 259 LDLIIPYVTLEPVRDQLSQQFMGERFGRDSKWEGHLVSEILETDIQVSAVFEEKTILLSE 318

Query: 256 VVTLKIGQVIPFLHREKTCAILS--ANGKEIYSCELGRVGKNYTIRITDRI 304
           V+ L+ G +I F H+  T   +        ++   LG++     ++I  R+
Sbjct: 319 VLGLRPGMLISFPHQNGTPIHVRLQCGQTPLFEGRLGKLQDKAAVKIEKRL 369


>gi|254292908|ref|YP_003058931.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814]
 gi|254041439|gb|ACT58234.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814]
          Length = 376

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 101/286 (35%), Gaps = 4/286 (1%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           +  +            +   +     + L    +     +V++S  S  S +F   ++S 
Sbjct: 77  IRSIINSAHVSYERLPMLEVVFDRLVRLLTTSLRNFTSDNVEVSLDSIASMRFGDYLNSI 136

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAK 136
               + S        +   +   +NL+ ++++ LLG        ++  R  +T+E+ L  
Sbjct: 137 PLPAILSVFRARQLDNYGLVTVDSNLIYSIVDVLLGGRRGTAAMRVEGRPYTTIERMLVT 196

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
           R +  I A   +  +   E   +L+        +             + + + +E+    
Sbjct: 197 RLVEVILADAKKAFNPLTEVDFDLDRIET--NPRFAAIAQPANAAILVRLRVDMEDRGGR 254

Query: 197 FVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P  TL     ++  +   +            A + +    N+   ++  +  L  
Sbjct: 255 CELMLPYATLEPIRKMLLQNFMGEKFGNDNIWEGHLATEIWTAPTNVRVVMDEFEQPLGR 314

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +++L++G  +     + +   L      +   ++GR+GK   +R+ 
Sbjct: 315 MMSLEVGDTLLMTAGQNSKVSLRCGDIYLTEGQIGRIGKKVAVRVD 360


>gi|90422602|ref|YP_530972.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
 gi|90104616|gb|ABD86653.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
          Length = 311

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 102/300 (34%), Gaps = 3/300 (1%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
            +L G  G       +   +         +  +         S +   S + S I+  ++
Sbjct: 14  DQLLGAAGISVERMPMLHVIFDQMTNLCAEALRSMSPSQSYFSLSGVGSDRLSDIVDRYE 73

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
              + +     +W +   IG   + + T++E L GA     P    R  S VE  +A+  
Sbjct: 74  GEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPPLDMPRVFSNVEMHVAQAL 133

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
             +    L    S   + +  LE       +        N      N+ +   +      
Sbjct: 134 FERFGKALQSSFSRASDVNFTLERVET--RMDYLAVGRLNNMAVCANILLQGLDRGGEMF 191

Query: 199 LIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
           ++IP   L             +S +   +       +  +  V +   +  +  TL +V 
Sbjct: 192 IVIPHAALNPIRQALSQIVTGESASTDPNWSRQLHSEIKRTEVVLKAVLEERPFTLGEVA 251

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
              +GQVI       T   L  N + ++ C+LG++   Y++++ +  +  ++ +   L +
Sbjct: 252 GFHVGQVIKLNATPNTMVRLECNNQRLFWCQLGQLNGVYSLQVKESADQKREFIDGILSR 311


>gi|182679717|ref|YP_001833863.1| flagellar motor switch protein FliM [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635600|gb|ACB96374.1| flagellar motor switch protein FliM [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 313

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 108/297 (36%), Gaps = 3/297 (1%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
            RL    G       +   +         +  ++        + +S  + +   I+ +++
Sbjct: 16  ERLLDTAGVSIDRMPMLHVIFDRMVAQCSESLRQYSAAPAVFTVSSIGTERIGDILDAYE 75

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
            N V +   + +W S   +G     + TL+E   G      P +  R LS +E KLA+  
Sbjct: 76  NNTVVAIIHVQAWDSRILVGFDRAFISTLIETFYGGDGSEPPNIEKRPLSNIEIKLAQTI 135

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
              +   L    ST  E+    E       L        N F     +N+ I        
Sbjct: 136 FDLLPKALQTSFSTISETVFKFERLETK--LDFAVIAPRNTFGFITRINLRILGRHGEMF 193

Query: 199 LIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
           ++IPQ +L            N +  +          +  +  V +   I      L D  
Sbjct: 194 VVIPQSSLNSIRQELGRDLANDAVVRDPRWTKQIQNEISRTEVEVRAIIEDSHFVLGDFT 253

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
            LKIGQV+P     K+ A L  N + ++ C++G+    YT+R+ D I+ ++  ++  
Sbjct: 254 ELKIGQVLPLQATTKSRAKLECNAEPLFWCQVGQEDGFYTLRVEDFIDQEKDFIEGI 310


>gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
 gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
          Length = 327

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 99/280 (35%), Gaps = 6/280 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +   +L   + +         +   V+I   S     ++  + S   N  F+  S
Sbjct: 52  SKEQIRAIKNLHDKFSRNFSSKLSAFLRSIVEIEVVSVDQMTYAEFVLSLSNNVSFNVVS 111

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           LS    N       ++   L++ LLG   E+     NR  + +E+ +    + Q    + 
Sbjct: 112 LSPLDGNAVFSLEPDIGFALIDRLLGGIGESSN--INRPFTDIEQSILLDVVRQAMEEMR 169

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                  + S  +        +        +E V  +   + +          +P   L 
Sbjct: 170 SSWEPIIDISFEVVGQESSPNV--VQIVAPSEIVVLVVFEVKLGETTGIINWCLPVIVLE 227

Query: 208 KTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  +     +S+  +ED I+  AR   ++ V ++ R+      ++D ++LK G ++
Sbjct: 228 PVLNKIGTHDILARSKKATEDRIEDIARTLKEVLVYLEFRLGTAAMKVEDFLSLKEGDLL 287

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               +      +  NG E Y  +LGR G N  ++I   I 
Sbjct: 288 TLDKKVDDELPVFINGVEKYGVKLGRKGYNKAVKINRIIG 327


>gi|295696124|ref|YP_003589362.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912]
 gi|295411726|gb|ADG06218.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912]
          Length = 332

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 96/314 (30%), Gaps = 16/314 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M+ +   +           R        K   +  + +   Y + L   F  ++   + +
Sbjct: 27  MKEEEEQRRIRAYDFKRAMRF------SKDQLRSLTRIYENYARMLSTYFSAQLRTWMHL 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
              S +   +   I S  +        L+  S  + IG   ++   +L+ LLG     + 
Sbjct: 81  DVISVEQLPYEEFIRSMPQLSTLLVVDLAPLSGRWVIGIGPDVAFVMLDRLLGGPGLELA 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE-SSPNLEDFYDIDYLKKNTNRLSNE 179
               R+ + +E  + +R+ ++   VL        E   P L         +       N+
Sbjct: 141 --GARAFTEIETTVFERSWSRSLGVLGDAWKGIVEDLRPTLSFIEF--NPQFLQIAAPND 196

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-----NKSENQSEDLIDPFARK 234
            V  ++++M I        + +P  TL +      S                  +    +
Sbjct: 197 TVAVVSVSMRIMETTGLMHIGMPHLTLERLLPKLSSQHMLGMGQAGRALDPAREEALRER 256

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V I   +        D++ L  G VIP          +    +  Y    G    
Sbjct: 257 LRAAPVEIRAVLGRTSIDFYDLMHLAAGDVIPLHQSVNRPVEIYVGDRVKYLGRPGVDHG 316

Query: 295 NYTIRITDRINFDQ 308
              ++IT+  + ++
Sbjct: 317 RLAVQITEIADDER 330


>gi|147678396|ref|YP_001212611.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
 gi|146274493|dbj|BAF60242.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
          Length = 330

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 8/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    L  ++ + L       +  +V I   S     +   I S     V +  S
Sbjct: 47  SKDQLRTLQVLHGVFARLLSNFLTGYLRSNVQIEVASVDQLTYEDFIRSIPTPTVLAIFS 106

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L+           +  +  +++   G + E    +  R L+ +E  + ++   +I   L 
Sbjct: 107 LNPLKGTAIAQLDSMFLFPIIDLFFGGNGEAPKAV--RELTDIELSVVRKISMKILEHLA 164

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETL 206
                     P +E          +     +E V  I +   +   A     L +P   L
Sbjct: 165 LAWKDIVHVEPVIETVET--NPYLHQIFSFSEIVALITLTTQVGESARGFINLCLPFPLL 222

Query: 207 LKTTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
                     +    ++   +++ +           + +       + T+ D + L+ G 
Sbjct: 223 DPVVSQLSFQRRFGPQTSAVNDEEVKRLQYWLGFPKIELTVLAGQTQITVDDFLQLQEGD 282

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           V+    +      L       +  + G +G    ++IT      +
Sbjct: 283 VLILDKKVDQDLDLYIGEHLKFKVQAGALGSKLAVQITALATEGE 327


>gi|325291948|ref|YP_004277812.1| Flagellar motor switch protein [Agrobacterium sp. H13-3]
 gi|45479283|gb|AAS66685.1| FliM [Agrobacterium sp. H13-3]
 gi|325059801|gb|ADY63492.1| Flagellar motor switch protein [Agrobacterium sp. H13-3]
          Length = 319

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 165/305 (54%), Gaps = 2/305 (0%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   LLA+LTG L D+KTI K+ S +G+LY +FLP IF  +  + +D+ Y   +SG  + 
Sbjct: 14  IDTSLLAKLTGGLSDRKTIAKVGSDIGHLYSEFLPDIFHSETGIAIDVEYIGSESGLMTD 73

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +   NF  +  SL +W  NF +   N  VI L+E +LGA+ +TI +   RSLS +E 
Sbjct: 74  LIANIGGNFSVADCSLRNWCPNFMMAVGNGFVIALMERMLGAAADTIGEPDERSLSHIEL 133

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA   + +I  VL   ++        ++  +  +        ++  +  T+ M + I  
Sbjct: 134 DLAAMVLGRIGGVLRSGVNAPGGFEATIDLPFTANGKSAFEEMIAGLYGVTVRMKIAIGK 193

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V+S F LI+PQ  LLKT++ +  +  ++  +  + +D  + +  +  V ++ RI L+  T
Sbjct: 194 VSSEFALIVPQRPLLKTSIAAPKASAQALKKQAEWVDLISEQVKRSQVTLEARIKLETLT 253

Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           L+ +  L  G VIPF    ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + 
Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313

Query: 311 LKNFL 315
           L++ +
Sbjct: 314 LRHLM 318


>gi|254473349|ref|ZP_05086746.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
 gi|211957465|gb|EEA92668.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
          Length = 321

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 3/302 (0%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            L +RL    G       +   +     +      ++       ++  S  + +    + 
Sbjct: 21  DLPSRLLDAAGLGVDRLPMLHVVFDRMARQYIDTLRQMAATAPYLAVQSVSNERIGDALE 80

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
            +++  V +      W +   +G     + +++E LLG   E  P L +RSL+ VE++LA
Sbjct: 81  QYEDRAVVAVLHAQEWDARILLGFDRTFIFSMVEVLLGGDGEEEPFLEDRSLTNVEQRLA 140

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
            R   + +  L        ++S  +E     + ++       +       M   I     
Sbjct: 141 YRMFEEAATALETAFEAIADTSLKVERLE--NRMEFAQTGRKSNPCVLAKMTAEIIGREG 198

Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              +IIPQ  L             +   +       F ++  +  V +   +  ++ TL+
Sbjct: 199 EIFIIIPQSVLNPLRENLTQVLSGEVAGRDTRWTKQFQQEVQRTEVKLTAILEEQRMTLE 258

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           +V   ++G V+      KT   L  N + +++C LG+V  +YT+R+ + I  + + L + 
Sbjct: 259 EVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSYTVRVEELIEQEGELLDDI 318

Query: 315 LH 316
           L 
Sbjct: 319 LS 320


>gi|258514031|ref|YP_003190253.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777736|gb|ACV61630.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 334

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 88/273 (32%), Gaps = 7/273 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +    L   Y + L       +   + +   S     F   + S     + +  SL   +
Sbjct: 56  RTLQMLHEGYGRLLSSYLTGYLRASIVVRVISVDQFTFDDFVGSVPSPTLLTVFSLPPLT 115

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               +  +   +  +++ L G + +   ++  R L+ +E  + K+ I ++   L      
Sbjct: 116 GPAVLETNPQFLFPIIDLLFGGTGKMSDRV--RELTDIELSVIKKLIPKLLEQLVLAWQD 173

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTL 211
             E +  L+        +        E +  +  +  I   +     L +P   L     
Sbjct: 174 LYEVTAELQSIET--NPRLMQVMNPGEIIALLTFSTVIGGTSRGLINLCLPYLMLEPVLS 231

Query: 212 ISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                    + +   ED +        Q  + +       K +++D + L+ G V+    
Sbjct: 232 KLSIHYRNTRKDMAKEDDLRRLEYWMGQAELTLTAVAGETKISVRDFLQLQEGDVLTLDR 291

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           R      L    K  Y  + G +G+   ++IT 
Sbjct: 292 RIDEDVDLFLEEKLKYKVQPGTMGRFMAVQITS 324


>gi|291278835|ref|YP_003495670.1| flagellar motor switch protein FliM [Deferribacter desulfuricans
           SSM1]
 gi|290753537|dbj|BAI79914.1| flagellar motor switch protein FliM [Deferribacter desulfuricans
           SSM1]
          Length = 333

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 100/301 (33%), Gaps = 12/301 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K  S        R+       K   +   +L   + +         +    DI+  S   
Sbjct: 35  KKVSVYDFRRPDRV------SKEQLRSLRNLHDKFARNFSSALSNVLRAITDINLVSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S  +   F+  S+     N  +  + ++V  +++ LLG + + + ++  R L
Sbjct: 89  MTYGEFLMSLPDPTSFNVISMIPLEGNLVLEINPSIVFPIVDKLLGGTGQPLYKI--REL 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           + +E+KL    I  +   L          +   +     +  +       NE V  I   
Sbjct: 147 TDLEQKLLDGVINLLLKELEDVWRQVIP-NVKFKKEVSENSPQVIQIVAQNEVVVLIVFE 205

Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +     +    L  P  TL                 + +  +  +        + V+++ 
Sbjct: 206 VKFGEASGLINLCFPAITLEPVLGKISSQDWIIGGKKGKFGNYEEQIFLLLEDIFVDVEA 265

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     T+ ++++LK G  I    +    A+L  N  + +  ELG  G    +++   I
Sbjct: 266 VLGENIFTVDEILSLKAGDTILLNKKSTHPAVLILNNLKKFEVELGISGVKKAVKVKRII 325

Query: 305 N 305
            
Sbjct: 326 E 326


>gi|158422267|ref|YP_001523559.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571]
 gi|158329156|dbj|BAF86641.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571]
          Length = 309

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 112/310 (36%), Gaps = 3/310 (0%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           N +  H  +   L    G       +   +         +  ++        S +S ++G
Sbjct: 2   NAAHSHQDIRDMLLDAAGLSIDRMPMLHVIFDRLGTLCAEGLRQLAASQAFYSLSSIETG 61

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +   ++  ++   V     +  W S+  +G   + V T++E L GA     P    RS S
Sbjct: 62  RIGDVLEMYEGMAVAGVFHVPMWDSHIIVGFDRDFVFTMIEALFGADGSEPPVDDERSFS 121

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E ++++    Q+   L+   +   ++    E       +        N    T    +
Sbjct: 122 NIELRISQAIFEQMQKALHNAFTMVSDTQFKFERQET--RMDFAVIGRRNNLAVTAKFLL 179

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
              N      +IIPQ  L         +   ++  +          +  +  V +   + 
Sbjct: 180 QALNRGGEMFVIIPQSALTPMRQALARTTPAETSGRDPIWTKQIRDEVNRTQVKVRAILE 239

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            +   L ++   K+GQV+      +T   L +  + ++ C LG+    Y +R+ ++IN +
Sbjct: 240 ERHYPLGEIADFKVGQVLHLQATPRTLVKLESADQPLFWCHLGQAEGAYVLRVEEQINLN 299

Query: 308 QKSLKNFLHK 317
           Q+ + + L +
Sbjct: 300 QEFVDDILPR 309


>gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
 gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
          Length = 333

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 98/311 (31%), Gaps = 12/311 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
            +              ARL       K      + +   + K +  I   ++  +VD+  
Sbjct: 30  QEQEKNKVKSYDFRRPARL------SKEYITTLNMIFEEFAKIIGNILSTQIRTNVDVKL 83

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS--HETIP 120
            S +   F   +HS     +      +       I  +  L + L++ L G+S   +   
Sbjct: 84  ASIEQVSFDEFVHSVPRFTLMGLFRSAPLEGTQIIELNPQLCLQLVDLLCGSSEIRKNDE 143

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
            +   S + +E  + +  +   S           +    ++        +       NE 
Sbjct: 144 VMSKNSFTDIEMAILEEILTNFSQSFELAWRDVVDLKVKID--STETNPQILQTMSPNEP 201

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQL 238
           V  + + + +  V +   + +P              +  +  +           +  +  
Sbjct: 202 VVLVTLTVELHGVKTFINVCVPYIFFEGILEKLSLRNWFHSEKETDHTDSGKLEKSLHSA 261

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            VN++  +     TL++ + L++G +IP   +     +LS      Y  + G  GKN  +
Sbjct: 262 PVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLSVEELPRYFVKPGLKGKNMAV 321

Query: 299 RITDRINFDQK 309
            +   I  +  
Sbjct: 322 EVLQYIGGETD 332


>gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
 gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
          Length = 348

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 96/280 (34%), Gaps = 7/280 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +   ++   +   + + L      ++   VDIS ++     +S  + S           
Sbjct: 55  SQDQMRVLHYVHEAFARDLSVYLSAQLRTLVDISLSAIDQVLYSEFVMSSAPPSALYVVD 114

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +     L I ++E L G     + +   R LS +E+++  + + +    L 
Sbjct: 115 VHPLHQKIVLELDPRLAIFMVEKLFGGPGIFLRKP--RELSQIERRIMDKVMMRAFRELE 172

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +      +   +LE+       +        E        ++I    S   +  P   L 
Sbjct: 173 KAWKQIHDI--HLEEAGFESNAEFVQILPGVEPALVATFEVSIYEQRSFINICYPYILLE 230

Query: 208 KTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           +      +     + +      +   +  +  ++ V +   +   +  L +++TL++G V
Sbjct: 231 RMLGHSAMKQWRSSSTTEVPPAVRQRYEEQLEKIEVELRAVMGRTRIKLSEMMTLEVGDV 290

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           I    R      +    +E +    GR GK+  +RI + +
Sbjct: 291 IVLERRVNQPVQVYIGEREKFRAIPGRSGKHRALRILEVV 330


>gi|85060031|ref|YP_455733.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
           'morsitans']
 gi|84780551|dbj|BAE75328.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
           'morsitans']
          Length = 317

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 79/285 (27%), Gaps = 13/285 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S      P  P +  R+       +   +    +   + +         +    DI+  +
Sbjct: 28  SAEPEIKPYDPYIQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 81

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q   +     +       +   L           S  LV    +NL G       ++  
Sbjct: 82  IQIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPILVFIAADNLFGGDGRFPIRMEG 141

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +        +      + +        +     N     N+ + T 
Sbjct: 142 REFTHTEQRIIRRMLRLALEGYQEAWQAIYQLTIEYVHAE-MQVKLTNITSSPNDIMVTT 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
             ++ I ++   F + IP   +     +  +   +     +   +   R+     + +  
Sbjct: 201 PFHVEIGSLIGEFYICIPFSMIEPLRELLANPPLE----DQSWRENLVRQIQHSELELVA 256

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
                   L +++ L    V+              +G  + +  +
Sbjct: 257 NFTDVSLQLSEILKLAPADVLNIEKP--EHITAYVDGVPVLTGHV 299


>gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
 gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
          Length = 331

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 94/313 (30%), Gaps = 12/313 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +  +               RL       K      + +   + K    I   ++  +V +
Sbjct: 27  LDEKEQENKVKSYDFRRPVRL------SKEYISTLNMVFEEFAKISGNILSTQVRTNVGV 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS--HET 118
              S +   F   +HS     +              I  S  L + L++ L G++     
Sbjct: 81  QLASIEQVSFDEFVHSVPRFTLMGLFHSVPLDGTQIIEISPQLCLQLVDLLCGSTEIRSN 140

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
           I +L   S + +E  + +  +               E    L+        +       N
Sbjct: 141 IDELSKESFTDIEMAILEEILNNFINAFELAWRDVVEVKGKLD--STETNPQMMQTMSPN 198

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTY 236
           E V  +   + +  V +   L +P              +  +  +           +  +
Sbjct: 199 EPVVLVTFTVELYGVKTFINLCVPYIFFEGILEKLSLRNWFHSEKETDHTDSGKIEKSLH 258

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
              VN++  +     TL++ + L++G +IP   +     ILS      Y  + G  GKN 
Sbjct: 259 SAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLILSVEKLPRYFVKPGLQGKNM 318

Query: 297 TIRITDRINFDQK 309
            + +   I  +  
Sbjct: 319 AVEVLQYIGGETD 331


>gi|315121854|ref|YP_004062343.1| flagellar motor switch protein fliM [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495256|gb|ADR51855.1| flagellar motor switch protein fliM [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 318

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 208/318 (65%), Positives = 254/318 (79%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           MR +   K+ SPLHP+LLARLTGKLGDKKTIE+IS +LG LY K LPK FKE++D+D+++
Sbjct: 1   MREKRTSKDISPLHPVLLARLTGKLGDKKTIERISYNLGQLYTKLLPKSFKEELDVDLNV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           SY + QSGKFSHI+HSFKE FVF + SL+  SSN FIGCSNNLVI LLE LL AS ET  
Sbjct: 61  SYGNYQSGKFSHILHSFKERFVFYKTSLNGRSSNLFIGCSNNLVIVLLETLLRASCETTQ 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           + +NRSLST+EKKLA   + +I+ VL+QCIST Q +   L++ Y++D+LK+NTN LSNEF
Sbjct: 121 KSHNRSLSTIEKKLAHLIVTKIATVLDQCISTAQNNRVTLDENYELDFLKQNTNLLSNEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
           VT I M +TI+N+AS F LIIPQETLLK TLISLS Q KS    ED  D     TY+++V
Sbjct: 181 VTAITMVVTIDNIASLFTLIIPQETLLKITLISLSEQGKSAIPLEDCPDQLNGNTYKIHV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            I++RINL+K TLKDV+ LKIGQV+PFL +EK  AIL+ANGKEIYSCELGR+GKNYT+RI
Sbjct: 241 KIESRINLQKITLKDVLNLKIGQVMPFLDKEKVYAILNANGKEIYSCELGRIGKNYTVRI 300

Query: 301 TDRINFDQKSLKNFLHKR 318
            DRINFDQ+SL+NFLHK 
Sbjct: 301 QDRINFDQESLRNFLHKE 318


>gi|118581837|ref|YP_903087.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM
           2379]
 gi|118504547|gb|ABL01030.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM
           2379]
          Length = 325

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 3/265 (1%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +   + ++       ++   V+I     +S KF   I +       +   +        I
Sbjct: 56  IYDSFIRYNRVSLSNRLRKVVEIKKIGARSYKFDDFIQTLPSPVCMAIFKIEPLKGAALI 115

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
              + LV++L+++LLG +  +   + NR  +++E +L ++ +A I   L +  +    + 
Sbjct: 116 SFDSTLVLSLVDSLLGGTGTSKVSMANRMFTSIELRLVEKIVADILQDLEKAWAPLYATH 175

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
            NL         +          + T+++ + IE+++ + V  +P  T+        +  
Sbjct: 176 MNL--LRMEMNPRLINIVPPEYQIVTMSLKIQIEDISGNMVFAVPYMTIEPIRDKLKAGM 233

Query: 218 N-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                          +    +  + I   +     TL +++ L  G  I       +  +
Sbjct: 234 QFDLMAIDPQWSSRLSSGLMEAPLEIVVEMGNANITLGELLDLAAGDTIMLDKPCSSELL 293

Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301
           +   G   Y    G    N  I+IT
Sbjct: 294 VKVEGTTKYFAIPGIRHGNRAIQIT 318


>gi|27381992|ref|NP_773521.1| hypothetical protein bll6881 [Bradyrhizobium japonicum USDA 110]
 gi|27355162|dbj|BAC52146.1| bll6881 [Bradyrhizobium japonicum USDA 110]
          Length = 313

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 104/298 (34%), Gaps = 3/298 (1%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
           L    G       + + +            +         S     + +   II  ++ N
Sbjct: 18  LLDAAGISIERMPMLNVIFDRMAASCTDSLQPMAGTPCYFSVNGITNDRVGDIIKDYEAN 77

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            V +      W S   I    + V T++E + G+     P    RS S +E +L +    
Sbjct: 78  AVAAVLYAEQWDSRIIIMLDRDFVFTMVEAMFGSDGAEPPLDVERSFSNIEIRLVQALFE 137

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
           + +  L    + T   +  +E       +       S       N+ +          LI
Sbjct: 138 RFAKALQSAFAGTSNVTFRVERVETA--MASLAIGRSGNMSICANIMLQALYRGGQMFLI 195

Query: 201 IPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           IP   L            +          +    + ++  V +   ++ K  TL DVV  
Sbjct: 196 IPHSALNPLRQKLAHVVVSDGRASDPRWREQMESEVHRTEVTLSAVLDEKMVTLGDVVKF 255

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           ++GQV+      +T A L +N + ++ C++G++   Y +++ D ++  ++ + + L +
Sbjct: 256 QVGQVLELEATPRTLARLESNNQVLFWCQIGQLDGYYAMQVADPVDQKREFVDDILSR 313


>gi|258592491|emb|CBE68800.1| putative Flagellar motor switch protein fliM [NC10 bacterium 'Dutch
           sediment']
          Length = 333

 Score =  202 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 86/284 (30%), Gaps = 7/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    L   + K +       +   V+I  T  +   ++  I S           
Sbjct: 47  SKEQLQALQMLHDRFAKQMGGTLSPLLRTFVEIRPTLVEQMAYAEYIASVAYPACLGIFG 106

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +     L+  +++ +LG +         R L+ +E+ L  + + +    L 
Sbjct: 107 MKPLKGGAIVELPPRLISYIIDRILGGAGRISDV--ARELTEIERALVSKLLRRTLEDLR 164

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
              S        L +                + V  I  ++ I +V     L  P   L 
Sbjct: 165 NAWSRVSLFQFELLNLEV--NPGFLQLAAPTDMVILIGFDVKIGDVEGMMSLCFPFSMLE 222

Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                           E   E      A+    + +++   +     T+ ++  LK G +
Sbjct: 223 PVIPNLSLRRWIAGHREETDEVGAAEIAKAMPAVGLSVRALLGSIPLTVHELSFLKAGDI 282

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +       +  +L   G   Y  ++G   +   ++I   I+ ++
Sbjct: 283 VRLDIGASSLGVLEVEGVPKYVVKVGTSHRKRAVQIVADISEEK 326


>gi|54294679|ref|YP_127094.1| flagellar motor switch protein FliM [Legionella pneumophila str.
           Lens]
 gi|53754511|emb|CAH15995.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
           Lens]
          Length = 353

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 78/286 (27%), Gaps = 5/286 (1%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
            TG+    K    +   +     +            D +I        K    + S    
Sbjct: 71  FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNP 130

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            +              I   +  V  L++   G + +   Q      +  E ++ +    
Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
           ++   L        +    +  F D    +        E +      +       +F  I
Sbjct: 191 KLVTNLTHAWEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFLLNFGKETGAFYFI 248

Query: 201 IPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           +P   L        L +    +    + I+    +   + + +   +    +TL  V+  
Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAW 308

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           K+G  +P          L   G   ++  LG   +   ++I   I 
Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSANEKRALKIIKIIR 352


>gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
 gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8]
 gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
 gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8]
          Length = 372

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 103/290 (35%), Gaps = 7/290 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T ++I + +   + + L      ++   VDIS T+     +S  + S           
Sbjct: 55  SQTQKRILNQVHESFARDLSVYLSAQLRTIVDISLTAVDQVLYSEFVMSSAPPSALYVLR 114

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                          LV+  +E L+G   + + +  +R +S +E+++  R + +    L 
Sbjct: 115 EDELEYRSIFEIDPRLVVYTIEKLMGGDGQLMDE--SREVSPIEQRIMSRVMKRAYRKLE 172

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +      E   ++E+       +      + E     + ++ + +  S   +  P   L 
Sbjct: 173 ESWRKAYEL--SVEEVAFESNAEFVQIIPAAEPALVASFDVRVYDEPSFINICYPYLMLE 230

Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           +    S       + +     ++ D +     +  VN+   +      + ++  L+ G V
Sbjct: 231 QMLGRSGMEQWISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDV 290

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           IP          +  NG++ +    GR G+   +RIT   + +     + 
Sbjct: 291 IPLDRETDDPIKVFVNGEQKFEAVPGRSGRQRALRITAAESPENVEFDSL 340


>gi|254497501|ref|ZP_05110294.1| flagellar motor switch protein FliM [Legionella drancourtii LLAP12]
 gi|254353316|gb|EET12058.1| flagellar motor switch protein FliM [Legionella drancourtii LLAP12]
          Length = 358

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 88/300 (29%), Gaps = 11/300 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
                 L+     R+            +   +     +       +    D +I+     
Sbjct: 68  DSEVKTLNFSSQERIVKGK------LPVLDRIYDRAVRSFATDIYQLTAKDFEITQDQML 121

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             K    + S     + S            I   +  V  L++   G S + + Q     
Sbjct: 122 IIKHRDFMESLPNPSLMSIYKFKPLRGKGIIMFDSTFVYDLVDYYFGGSTQFLAQKDRTD 181

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            +  E ++ +    ++ A L        +    +  F D    +       +E +  +  
Sbjct: 182 FTATELRVMEAVTTKLIANLTLAWKPIIQLD--ISKFNDETNPQLVNIAEPDEMLLVVRF 239

Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           ++        F  I+P   +        L +    +    + +     +   + + I + 
Sbjct: 240 SLDFGKETGDFYFILPYTMVEPIKEQLELGASRPDDEIDPNWVKSLKEELMDVELVISSA 299

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   K+TL  V++ + G  IP   +      L   G   Y+  LG   +   ++I   I+
Sbjct: 300 MAQTKSTLGTVMSWQAGDFIPMEMK--EIVTLDVEGTPGYTATLGTANEKRALKIIKNIS 357


>gi|54297705|ref|YP_124074.1| flagellar motor switch protein FliM [Legionella pneumophila str.
           Paris]
 gi|53751490|emb|CAH12908.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
           Paris]
          Length = 353

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 81/286 (28%), Gaps = 5/286 (1%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
            TG+    K    +   +     +            D +I        K    + S    
Sbjct: 71  FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMKSLPNP 130

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            +              I   +  V  L++   G + +   Q      +  E ++ +    
Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
           ++ A L        +    +  F D    +        E +      +       SF  I
Sbjct: 191 KLVANLIHAWEPIIQLD--ITKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGSFYFI 248

Query: 201 IPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           +P   L        L +    +    + I+    +   + +++   +    +TL  V++ 
Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELSVSASMAETVSTLGQVMSW 308

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           K+G  +P          L   G   ++  LG   +   ++I   I 
Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSTNEKRALKIIKIIR 352


>gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 322

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 10/302 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K   P     + ++                +   + K   +  +    +   +S  S   
Sbjct: 26  KREKPFDFSKVEKIKKGGF------PGLEVIFERWAKIFREEIRSLFPVINMVSKNSITV 79

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF   I+       ++  ++   + +  +   + +V  L+  L G       ++  R  
Sbjct: 80  MKFGDFINKIPLPASYTIFTMKPLNESALLVIDSRVVFNLISALFGG-GARPFKIEGRDF 138

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           + +E  +    +  +     +   T       +E                 E V  + M 
Sbjct: 139 TKLELNIIHDFVDTVLTSFEKIWQTVYPVE--VERKSVELNPFLVRIVSPAEKVIVVEMI 196

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
           + IE +   F    PQ   L    I  S +  S     D  +   +K  ++ +N    ++
Sbjct: 197 LDIEGLEVPFSFAFPQMMFLPLKDIIFS-ETSSLEIPADWKENILKKLSKVELNFTLELS 255

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                +++++ L++G  I    ++     L   GK  ++ +LGR  K Y   I DR+  +
Sbjct: 256 RFTMLVEELLNLEVGSDIILNVKKDDSINLMVEGKPKFTAKLGRYDKKYAAMIVDRVKGE 315

Query: 308 QK 309
           + 
Sbjct: 316 ED 317


>gi|84502561|ref|ZP_01000697.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597]
 gi|84389373|gb|EAQ02170.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597]
          Length = 317

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 96/298 (32%), Gaps = 4/298 (1%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           +   +  K         I   +   +   +    K  +    + S  +         + S
Sbjct: 18  VEEEIIQKAKRSYERLPILEVILERFSLAVGPAIKHYVGAICESSIDAIDYLPTGDALES 77

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
                + S      W   F +    + +I+ LE   G       +   RS + +EKK+  
Sbjct: 78  MPSPALISVIESPDWDGPFALVIDPSFLISTLEITFGGRMAGRSEWVPRSFTAIEKKIGT 137

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
                +   L++      +    +         +       N     + M++T+++    
Sbjct: 138 EVTQLMLNELSETFGQLAQIEFTISHIET--NAQAMVLAPPNTGCVRLRMHVTMDDRDGY 195

Query: 197 FVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
           F +++P   L     + +      S    +             +V +  R+   K  L++
Sbjct: 196 FYIVMPFNALSNIRNMLVQPFHGGSLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQE 255

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLK 312
           V+  K GQV+           L  +G E+Y  + G R      ++IT+++  +++   
Sbjct: 256 VLEWKRGQVLDLGIEVDQPVSLICSGHEMYMAQTGKRKNGRMALKITEQLKDEEEMTD 313


>gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens
           GS-15]
 gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens
           GS-15]
          Length = 327

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 96/287 (33%), Gaps = 4/287 (1%)

Query: 25  LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84
             + K        +   + ++       ++   V+I      S KF   +H+       +
Sbjct: 42  SSESKGNIPNLDIIYDSFIRYQRGTLSNRLGRIVEIKKVGAASFKFDDFLHTMPSPVAMA 101

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQIS 143
                       I   + LV T+++ +LG +  ++ P + NR  +++E +L ++ +  + 
Sbjct: 102 VYKADPLKGAALIAFDSTLVFTIVDCILGGTGSSVVPTVGNRMFTSIELRLVQKIVMDVL 161

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
           A L +  +    +             +          V T+ M + IE +    +  +P 
Sbjct: 162 ADLEKAWAPIYATKMGF--LRMEMNPRLVNIVPPEYQVVTMEMEIQIEEIIGKMIFAVPL 219

Query: 204 ETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            T+        +  Q              +++  +  +++   +     ++ +++ L  G
Sbjct: 220 TTIDPVREKLKNGAQVDMMAIDPQWSFRLSKELLEAPLDLSVEVGGAIISMDELLNLTPG 279

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             I       +  ++   G   +    G    N   +IT  I   ++
Sbjct: 280 DTIMLDTPCNSDLVVKVGGVSKFMSAPGLRHGNKAAQITTIIGKGRE 326


>gi|115523171|ref|YP_780082.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
 gi|115517118|gb|ABJ05102.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
          Length = 275

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 96/274 (35%), Gaps = 3/274 (1%)

Query: 45  FLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
              +  +         S +   S + S I+  ++   + +     +W +   IG   + +
Sbjct: 4   LCAESLRSMSPSQSYFSLSGVGSDRLSEILDRYEGEAIAAVFYAQAWDARVLIGFDRDFI 63

Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
            T++E L GA     P    R  S VE  +A+    +    L    S   + +  L+   
Sbjct: 64  YTMIELLFGADGAEPPLDMPRVFSNVELHVAEALFERFGKALQSSFSMASDVTFTLDRVE 123

Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQ 223
               +        N    +  + +   +      ++IP   L             +S + 
Sbjct: 124 T--RMDYLAIGRPNNMAVSAQILLQGLDRGGEMFIVIPHAALNPIRTALSQIVTGESAST 181

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
             +       +  +  V +   +  +  TL +V    +GQVI       T   L  N + 
Sbjct: 182 DPNWSRQLHSEIQRTEVVLRAVLEERPFTLGEVAKFHVGQVIKLNATPNTMVRLECNNQR 241

Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           ++ C++G++   Y++++ +  +  ++ +   L +
Sbjct: 242 LFWCQMGQLNGAYSLQVKESADQKREFIDGILSR 275


>gi|148359336|ref|YP_001250543.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
           Corby]
 gi|148281109|gb|ABQ55197.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
           Corby]
          Length = 353

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 81/286 (28%), Gaps = 5/286 (1%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
            TG+    K    +   +     +            D +I        K    + S    
Sbjct: 71  FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMKSLPNP 130

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            +              I   +  V  L++   G + +   Q      +  E ++ +    
Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
           ++ A L        +    +  F D    +        E +      +       +F  I
Sbjct: 191 KLVANLIHAWEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFI 248

Query: 201 IPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           +P   L        L +    +    + I+    +   + +++   +    +TL  V++ 
Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELSVSASMAETVSTLGQVMSW 308

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           K+G  +P          L   G   ++  LG   +   ++I   I 
Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSTNEKRALKIIKIIR 352


>gi|148259983|ref|YP_001234110.1| flagellar motor switch protein FliM [Acidiphilium cryptum JF-5]
 gi|326403062|ref|YP_004283143.1| flagellar motor switch protein [Acidiphilium multivorum AIU301]
 gi|146401664|gb|ABQ30191.1| flagellar motor switch protein FliM [Acidiphilium cryptum JF-5]
 gi|325049923|dbj|BAJ80261.1| flagellar motor switch protein [Acidiphilium multivorum AIU301]
          Length = 337

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 102/312 (32%), Gaps = 7/312 (2%)

Query: 3   GQSIHKNTSPLHPILL---ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
           G ++  +     P      +RL     D      ++  +     + L    +     +V+
Sbjct: 28  GGALEDDALQPEPEAEQEASRLLYGRADSYERLPMAEVVFERLSRILAGSLRNLFQDNVE 87

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +  T   S + +          +        W +   I      V  L E LLG      
Sbjct: 88  VRLTRLASRRLADSFAEIAPMALLGVFRAREWDNLGLIHVDAMTVSNLTEILLGGRRVAA 147

Query: 120 PQ-LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
                 + ++++ + L +R I  +   L    +   + + + E        +  T   ++
Sbjct: 148 ATGQLPKPVTSISRNLTERLIRVVLHDLRNSFAPICDVTFDFERTET--DPRFATIGRNS 205

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQ 237
               T  +++          +I+P  TL     + L     +   +        A + + 
Sbjct: 206 GVALTARLSLHSAGRNCMIDIILPFATLEPVRELLLQQFMGEKFGRDSIWESHLAEELWH 265

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
            ++ ++  ++ +   L  V+ L++G +IP      +   L     ++++  LG       
Sbjct: 266 TDIELEAVLDEQTMKLGAVMDLRVGDIIPINAPRGSDVTLRCGSVDLFAGRLGVRHGRLA 325

Query: 298 IRITDRINFDQK 309
             I   I+ +++
Sbjct: 326 AEIRGWISRERE 337


>gi|296107383|ref|YP_003619083.1| flagellar motor switch protein FliM [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649284|gb|ADG25131.1| flagellar motor switch protein FliM [Legionella pneumophila 2300/99
           Alcoy]
          Length = 353

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 77/286 (26%), Gaps = 5/286 (1%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
            TG+    K    +   +     +            D +I        K    + S    
Sbjct: 71  FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNP 130

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            +              I   +  V  L++   G + +   Q      +  E ++ +    
Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
           ++   L        +    +  F D    +        E +      +       +F  I
Sbjct: 191 KLVTNLIHACEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFI 248

Query: 201 IPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           +P   L          +    +    + I+    +   + + +   +    +TL  V+  
Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAW 308

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           K+G  +P          L   G   ++  LG   +   +++   I 
Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSANEKRALKVIKIIR 352


>gi|52842019|ref|YP_095818.1| flagellar motor switch protein FliM [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629130|gb|AAU27871.1| flagellar protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 355

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 77/286 (26%), Gaps = 5/286 (1%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
            TG+    K    +   +     +            D +I        K    + S    
Sbjct: 73  FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNP 132

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            +              I   +  V  L++   G + +   Q      +  E ++ +    
Sbjct: 133 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 192

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
           ++   L        +    +  F D    +        E +      +       +F  I
Sbjct: 193 KLVTNLIHACEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFI 250

Query: 201 IPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           +P   L          +    +    + I+    +   + + +   +    +TL  V+  
Sbjct: 251 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAW 310

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           K+G  +P          L   G   ++  LG   +   +++   I 
Sbjct: 311 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSANEKRALKVIKIIR 354


>gi|317121825|ref|YP_004101828.1| flagellar motor switch protein FliM [Thermaerobacter marianensis
           DSM 12885]
 gi|315591805|gb|ADU51101.1| flagellar motor switch protein FliM [Thermaerobacter marianensis
           DSM 12885]
          Length = 322

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 93/310 (30%), Gaps = 6/310 (1%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M   +  K       I L          K   +  + +     +        ++   V++
Sbjct: 1   MNQGTARKGGRRSPVIRLYDFRRPDKFSKEQLRTLAMIHENVARLATGFLSGQLRTVVEV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
                +   +   I       V +  +L    S+  +    ++   +++ L         
Sbjct: 61  DVLEVEETTYGEFITGLANPTVVAVFNLPPLESSAVMDLEPSIAFPMVDRLF--GGPGTG 118

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               R L+ +E  + +  +  +   + +      +    L              +  NE 
Sbjct: 119 AAAGRGLTEIETVVMRVILQGLLGAVAEGWGQLVQVQGELVT--VAANPLFVQVQPPNEI 176

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQL 238
              + M +       ++ L +P   L          Q  +          + +      +
Sbjct: 177 AVRVVMAVRFGQQEGAWRLCLPYPLLEPVLPRLAVHQYYARETKSHARSRERWEEGLRHV 236

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +   +   + T+++++ L+ GQV+    R      +   G+  +    GR G    +
Sbjct: 237 PLPVTVVLGRTRLTVRELLALEPGQVLRLDTRAGGLVDVLVAGRPKFRGLPGRAGPRLAV 296

Query: 299 RITDRINFDQ 308
           ++ +R+  ++
Sbjct: 297 QVVERVAEEE 306


>gi|291558209|emb|CBL35326.1| Flagellar motor switch protein [Eubacterium siraeum V10Sc8a]
          Length = 319

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 109/315 (34%), Gaps = 20/315 (6%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +      +           + T      K   KI   +   Y + L       + L   +
Sbjct: 14  LNTHEEKEEIKEYDFRTPKKFT------KEQIKILERIFENYSRHLSSYITGLLRLYCKV 67

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-----SNFFIGCSNNLVITLLENLLGAS 115
           S  S +  K+    ++  +  +     L         SN  +  SN+L  T+++ +LG  
Sbjct: 68  SLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNAVLQLSNSLTFTMIDRMLGGR 127

Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
                   +R  + +E  + +  + + +++++Q      +++P LE        +  +  
Sbjct: 128 GTYQDT--DRDFTEIEINVMRGIVERFTSLMSQAWDGYVDTNPKLESIET--NSRVISAA 183

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-----SLSSQNKSENQSEDLIDP 230
            ++E +  + M +T+ +  S     +   T+ +         S   +  S  +  +  + 
Sbjct: 184 DADETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAKFSSGKRAGSPTKETERKEN 243

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 Q  + +   ++    TL+DV+ L++  +IP          L       +  +LG
Sbjct: 244 LMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITDNVQLKVGSTCWFDGKLG 303

Query: 291 RVGKNYTIRITDRIN 305
            +      RI + + 
Sbjct: 304 TLNGKKAFRIDNILK 318


>gi|258404714|ref|YP_003197456.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM
           5692]
 gi|257796941|gb|ACV67878.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM
           5692]
          Length = 336

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 81/271 (29%), Gaps = 4/271 (1%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +   + +        ++   V +   + ++  F + +   +E  +    S     S   +
Sbjct: 60  ILDAFARNSGISMANRLKRSVSVKRVAIETETFENFLQDLQEQSLIGIVSFEPLRSGGLL 119

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
                L   LLE + G + E    + +R L+++E  + K  +               E  
Sbjct: 120 IFDCPLSFCLLEVMFGGNSEAGISIPDRELTSIEINVLKNVMRDSCQDWEAAFEPLDELK 179

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
            NL         +  +       V     ++   N+     L+IP   +        +  
Sbjct: 180 TNLV--QAEINPRLVSIVSPETEVLVSRFSVKAGNIFGQMSLVIPFFAIEPYKEKLKNRM 237

Query: 218 NKSENQS--EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
                 S  +        +  ++   +  +      T+++++ LK G +I      +   
Sbjct: 238 FDVITVSGGQAWTKTIHDEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQ 297

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            +    K  +    G       +RIT     
Sbjct: 298 RVLVEQKPKFQAVAGTRKGKKAVRITGTTGQ 328


>gi|95929861|ref|ZP_01312602.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM
           684]
 gi|95134157|gb|EAT15815.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM
           684]
          Length = 329

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 107/302 (35%), Gaps = 4/302 (1%)

Query: 4   QSIHKNTSPLHPILLA-RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           +S  ++ SP    + +  L    G           L   + + L      ++   V +  
Sbjct: 27  ESSDEDYSPEPRAVSSFSLVQSKGQATMRLANFDILLDGFARNLSFSLSNRLQRAVSVLR 86

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            S  S ++  +IH    + ++   SL     N  +   +++    +E +LG   E    L
Sbjct: 87  ESISSMEYETLIHECSNHELYGILSLDPLKKNGLLIFDSSISFAQVEIMLGGVAEHSGDL 146

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R ++T+E  + K  I +    LN+  S  +    +L         +  T   ++  + 
Sbjct: 147 PQRGMTTIETNILKEVIRESCLELNKAFSPIEGLESDLVRVE--SNPRLVTIVPADTEMM 204

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
                + I  ++    L+IP  +L        S    +           A +   ++V +
Sbjct: 205 VAAFRVKINEISGLLRLVIPYSSLDPIREKLKSELG-ASGPGGQWRSHLAHEVEDMDVAV 263

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             ++      +++++ L++G ++           +   GK  +S   G       +R+ +
Sbjct: 264 SAQLAQITLNVREILDLRVGDILQLDCSVDQPVSVMVEGKGKFSGLAGLRDGKKAVRVLE 323

Query: 303 RI 304
           R+
Sbjct: 324 RL 325


>gi|330940699|gb|EGH43710.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 222

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 79/224 (35%), Gaps = 6/224 (2%)

Query: 82  VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
             + A +              LV  L++N  G       ++  R  +  E ++ +  + Q
Sbjct: 1   SLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQ 59

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
               L +      E +   E                +E V     ++ ++       + +
Sbjct: 60  AFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTM 117

Query: 202 PQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           P   +     +  +  Q+  ++Q E  ++        +NV + T I  ++  L+D++ ++
Sbjct: 118 PYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMR 177

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            G VIP         ++ ANG   +  +LG       +++ + I
Sbjct: 178 PGDVIPVEL--SDSLVMRANGVPSFKVKLGSHKGKMALQVIEPI 219


>gi|217976217|ref|YP_002360364.1| surface presentation of antigens (SPOA) protein [Methylocella
           silvestris BL2]
 gi|217501593|gb|ACK49002.1| surface presentation of antigens (SPOA) protein [Methylocella
           silvestris BL2]
          Length = 314

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 106/300 (35%), Gaps = 3/300 (1%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
            RL    G       +   +         +  ++        S  +  + +   ++ +++
Sbjct: 17  ERLLDAPGIAIDRMPMLHVILDRMIAQCSENLRQLSAPPAFFSVDTVAARRVGDVLDAYE 76

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
                      +W S   IG  ++ + TL E L G      P    R LS++E +LA + 
Sbjct: 77  NKVAIGVYHALAWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLSSLELRLAHKA 136

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
           +      L    ST  +++  LE       L        N F  T  + + I        
Sbjct: 137 LDLFGRALQSAFSTVSDTAFKLERVET--RLDFAVIAPRNAFGVTAKIKLRILGRHGEMF 194

Query: 199 LIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
           ++IPQ  L         +  + +  +          +  +  + +   I  +   L D+ 
Sbjct: 195 ILIPQAALNSVRQQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVIEERHFLLGDIA 254

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
            LK+G ++       T   L  N + ++ C LG+    YT+RI + ++ +Q+ +   L +
Sbjct: 255 DLKVGGILQLKSTPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSREQEFVDEMLSR 314


>gi|116624443|ref|YP_826599.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227605|gb|ABJ86314.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 293

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 93/270 (34%), Gaps = 4/270 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
            +    L   + + L       +   + ++  S +   ++  +             LS +
Sbjct: 1   MRAIHLLHDTFVRNLVSSLSAYLRSYLTVNLVSVEQLSYAEFLDGLPSPTCIVSLGLSPY 60

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
             N  +  + +LV  +LE LLG + ++   +  R ++ +E++L       I   L +   
Sbjct: 61  DGNGVLELNPSLVFPILEMLLGGTGKSSATI-QRDITEIEQRLLDGLFRIILQDLREAWK 119

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
                   +E        +       NE V +I + + I        + +P   +     
Sbjct: 120 AVTNVDFTIESMETE--PQLLHLLAPNEAVVSIGIEVRIGETVGMMNIAMPSIVIKMMRQ 177

Query: 212 ISLSSQNKSENQSEDLID-PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
                 +  +  + +       R   Q  + ++  +     ++ D+++L+ G ++ F   
Sbjct: 178 KFDQQWSVRKTHASEAEQFRVLRVLRQATLTVEALMEGPTLSVGDLLSLREGNLLTFDFP 237

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +    L  NG   ++ ++   G+    +I
Sbjct: 238 VERPIELVVNGACKFTGQVVSTGRKRACQI 267


>gi|291532053|emb|CBK97638.1| Flagellar motor switch protein [Eubacterium siraeum 70/3]
          Length = 319

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 108/315 (34%), Gaps = 20/315 (6%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +      +           + T      K   KI   +   Y + L       + L   +
Sbjct: 14  LDTHEEKEEIKEYDFRTPKKFT------KEQIKILERIFENYSRHLSSYITGLLRLYCKV 67

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-----SNFFIGCSNNLVITLLENLLGAS 115
           S  S +  K+    ++  +  +     L         SN  +  SN+L  T+++ +LG  
Sbjct: 68  SLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNAILQLSNSLTFTMIDRMLGGR 127

Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
                   +R  + +E  + +  + + +++++Q      ++ P LE        +  +  
Sbjct: 128 GTYQDT--DRDFTEIEINVMRSIVERFTSIMSQAWDGYVDTKPKLESIET--NSRVISAA 183

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-----SLSSQNKSENQSEDLIDP 230
            ++E +  + M +T+ +  S     +   T+ +         S   +  S  +  +  + 
Sbjct: 184 DADETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAKFSSGKRAGSPTKETERKEN 243

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 Q  + +   ++    TL+DV+ L++  +IP          L       +  +LG
Sbjct: 244 LMSTLSQSELTVTAVLDDTVLTLRDVLNLQVNDIIPLNKPITDNVQLKVGSTCWFDGKLG 303

Query: 291 RVGKNYTIRITDRIN 305
            +      RI + + 
Sbjct: 304 TLNGKKAFRIDNILK 318


>gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
 gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
          Length = 315

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 100/295 (33%), Gaps = 12/295 (4%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            HK   PL    L  +        +       +   +   L +     M     +     
Sbjct: 29  THKEVKPLDISTLEHI------SASRIAGLELILERWVSSLKRSLSSVMVSIPAVLKEGV 82

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
              +FS  +            ++        +     ++   + +L G   +   ++  +
Sbjct: 83  SVVRFSEFVSQLPFPSAIGFFNVHPLRGVSMLVLDPRIIYMTVSSLFGGPPKPY-KIEGK 141

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             + +E ++ ++ +      L +  +T  E    +            T     E    + 
Sbjct: 142 EFTKIELRIVQKILEICYRELEEVWNTVMEVK--VIPQGLETNPSLLTIARPKEKFIVLK 199

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + +++E       L IP+E+L     +    +  +E +S ++ +   +   ++ +N++  
Sbjct: 200 LLVSLEGSEGYMYLAIPEESLDPYKEVL---KGITELRSPEVSNKLLQALEEIPLNLEVI 256

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           +  +K  L D++ +K+G  +      +    +  +G       LG+VGK   I+I
Sbjct: 257 LGRQKIQLGDLLNMKVGDTMILQKGLREPVEVRVSGVPKALAFLGQVGKRKAIKI 311


>gi|167750716|ref|ZP_02422843.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702]
 gi|167656395|gb|EDS00525.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702]
          Length = 331

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 109/315 (34%), Gaps = 20/315 (6%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +      +           + T      K   KI   +   Y + L       + L   +
Sbjct: 26  LDTHEEKEEIKEYDFRTPKKFT------KEQIKILERIFENYSRHLSSYITGLLRLYCKV 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-----SNFFIGCSNNLVITLLENLLGAS 115
           S  S +  K+    ++  +  +     L         SN  +  SN+L  T+++ +LG  
Sbjct: 80  SLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNAILQLSNSLTFTMIDRMLGGR 139

Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
                   +R  + +E  + +  + + +++++Q      +++P LE        +  +  
Sbjct: 140 GTYQDT--DRDFTEIEINVMRGIVERFTSLMSQAWDGYVDTNPKLESIET--NSRVISAA 195

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-----SLSSQNKSENQSEDLIDP 230
            ++E +  + M +T+ +  S     +   T+ +         S   +  S  +  +  + 
Sbjct: 196 DADETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAKFSSGKRAGSPTKETERKEN 255

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 Q  + +   ++    TL+DV+ L++  +IP          L       +  +LG
Sbjct: 256 LMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITDNVQLKVGSTCWFDGKLG 315

Query: 291 RVGKNYTIRITDRIN 305
            +      RI + + 
Sbjct: 316 TLNGKKAFRIDNILK 330


>gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
           WM1]
 gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
           WM1]
          Length = 339

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 105/281 (37%), Gaps = 9/281 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA--SLSS 90
           KI  S+   Y +              ++S  + +  ++    ++  +N V +    +L  
Sbjct: 53  KILKSIFDNYSRIAGSQINSLFRTSSELSVVTVEEQRYYEFGNALSDNDVLTLVNVTLPD 112

Query: 91  WSSNFFIGCSNN--LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            S N  +  + +  L+++L++ +LG   +      + + + +E  L +R I  I   L  
Sbjct: 113 SSKNPPLLINASMTLMLSLIDRMLGGVGDDTAVDTSYTYTEIEMALYRRVIQYIIGALKD 172

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S+    +  L      +          +E +  + +++ ++  +    + IP   L+ 
Sbjct: 173 SWSSYINLNFELSRLE--ENPSMFQEIGVDETIVIVVLDVDMKECSGRLNVCIPGNLLMN 230

Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
              I    ++     E  S+D            ++ +  ++     TL DV  L +G VI
Sbjct: 231 IFDIMDKRKHSAMGDEANSQDNKQEIMNSIKASDLLVRAQVGESMITLDDVYNLHVGDVI 290

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                + +   L   G+  +  +LG   +N  +RI D +  
Sbjct: 291 NLGTPKDSDVQLYVEGQPWFRGQLGVHKRNVAVRIEDHVET 331


>gi|221635435|ref|YP_002523311.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM
           5159]
 gi|221158064|gb|ACM07182.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM
           5159]
          Length = 334

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 94/308 (30%), Gaps = 14/308 (4%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P       +        K   +   S+   + +F       ++   V       +     
Sbjct: 22  PYDFRRPDKF------SKDHIRSIQSIHEAFDRFASNYLSAQVRSAVHCELGPIEQTTLG 75

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
             +       V   A L        +         L++ +LG + E  P     +++ +E
Sbjct: 76  DYLDRLPSQVVLCIAELEPLVGRIVLEIDFATASRLVDRMLGGAGEERPPFTATTITEIE 135

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             L +     +   L           P       +   ++    + +E V  +   + + 
Sbjct: 136 LLLLRELGNGLFGELAAAWEQVIRLQPQ--PCEVVLSGQQIQGMMPSEIVLLVQHQVRLF 193

Query: 192 NVASSFVLIIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
               +F +++P  TL        +     N     S  +I     +  ++++ +   +  
Sbjct: 194 ESEGTFTVVLPASTLEPVLPRLNARVLFANPRRATSPQVIADLMAQLEEVSLQLRVELGR 253

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD- 307
            + T+++++ L+ G V+           +    +  +    G+ G++  IRI   +  D 
Sbjct: 254 ARLTVRELLALEPGDVLVLDQDVSFPLAVYVENEPCFYAFPGQRGRSLAIRIAGTLTEDW 313

Query: 308 --QKSLKN 313
              + L  
Sbjct: 314 PRDEELDQ 321


>gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 326

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 87/307 (28%), Gaps = 13/307 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q+  K           +L       K   +    L   + +         +   + IS  
Sbjct: 26  QTKEKVVRKYDFRRPDKL------SKEQLRTIQMLHENFARGASTELAGYLRSAMSISIV 79

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S     +   I S  +        +   + +     S + V  +++ LLG   + + ++ 
Sbjct: 80  SVDQVTYQEYIRSLSDPTFMYLVPIIDVT-SVIFEMSLDFVFAIIDKLLGGPGKPLREV- 137

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R L++VE  L  R +        +      + +  L                 ++ V  
Sbjct: 138 -RELTSVEATLMNRVMDVYLKHWLEAWKPIVQWN--LGKPTLEYSPGFVQIMPGSDVVIV 194

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVN 241
           I     +    +   + +P   +        + +    S+   +D           + V 
Sbjct: 195 ITYEEKLGEKTAIGTICVPYMAMEGFVQNLTAHRWFGVSKPTPDDWKTTLMEVIEDITVE 254

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +      + +++   +G VI    R      L   G        G   +   + +T
Sbjct: 255 VSAVLGEASVGIGEILKWNVGDVIELSRRSDEEVDLLVEGNLFAKGIPGIYQRRKALLVT 314

Query: 302 DRINFDQ 308
            R   D+
Sbjct: 315 GRSEEDR 321


>gi|330899437|gb|EGH30856.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 216

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 6/218 (2%)

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +              LV  L++N  G       ++  R  +  E ++ +  + Q    L 
Sbjct: 1   IKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLK 59

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +      E +   E                +E V     ++ ++       + +P   + 
Sbjct: 60  EAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIE 117

Query: 208 KTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
               +  +  Q+  ++Q E  ++        +NV + T I  ++  L+D++ ++ G VIP
Sbjct: 118 PIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIP 177

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                    ++ ANG   +  +LG       +++ + I
Sbjct: 178 VEL--SDSLVMRANGVPSFKVKLGSHKGKMALQVIEPI 213


>gi|329897652|ref|ZP_08272176.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC3088]
 gi|328921101|gb|EGG28510.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC3088]
          Length = 340

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 80/271 (29%), Gaps = 9/271 (3%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
            +   + +       E +     I   + ++  F   +         +   ++    +  
Sbjct: 58  MITERFTRHFRLGLLEVLRSSPKIHVDAVKTVVFEKYLSDLAPPLSVNTIRINPLRGSSL 117

Query: 97  IGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
           +    N+V   L+N  G     I      R  +  E ++    +  I A L +  +    
Sbjct: 118 VVLDPNVVFAALDNFFGGFGRGIAGLPPGRMFTPTETRIINIMMELIFASLKEAWAPIMP 177

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISL 214
                E+       +        + V   ++++ I         ++ P  +L        
Sbjct: 178 IEC--ENVSAEINPQFVQIADEKDLVVVCHLSVEISEAEVGRIDIVYPFASLKPIRDELR 235

Query: 215 SSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +      +   D     D          +     +   +  L    +L+ G V+ F   E
Sbjct: 236 ARVQSDTDTPRDAGLWHDDLETSASYAELEAVVTLGETEIPLHQFQSLRSGDVLWFKKYE 295

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              A +   G  +++ ++G V     I+I +
Sbjct: 296 D--AQMIIEGVPVFAADVGTVKGQVAIKIVN 324


>gi|269836614|ref|YP_003318842.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM
           20745]
 gi|269785877|gb|ACZ38020.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM
           20745]
          Length = 302

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 86/284 (30%), Gaps = 6/284 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +   ++   + +F       K+   V +S    +       +           + 
Sbjct: 17  SKDHLRSIQAIQEGFGRFAGNFLASKVRAAVHVSLVHVEQSTLGEFLDGLPFPTTLFISP 76

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL-YNRSLSTVEKKLAKRTIAQISAVL 146
           L        +    NL   +++ +LG   ++ P      S++ +E  L +     + A  
Sbjct: 77  LDPLVGQAVMQIDMNLAFLVIDRMLGGPGDSTPAPRAGASVTEIEMLLLEELGQGLFAEF 136

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
               +                   +    L  E    I   + +E       + +P   L
Sbjct: 137 VNAWAQVTSL--RAPHCEVALGAMQVQGLLPTEIALVIRHEVRMEGATGRLTICLPASML 194

Query: 207 LKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
                   +     N      E L    A +  ++++ +   +      + D++ +++G 
Sbjct: 195 EPILPRLNARLLFANPRAGVGEQLERDLAAQLERVSLAVRVELGRVTVRVADLLQVEVGD 254

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           VI       +   +    +  +  + G++     +RI +R+  D
Sbjct: 255 VIRLDTAADSALPVLVEDRVRFLGQPGQIAGQLAVRIVERVTDD 298


>gi|13472567|ref|NP_104134.1| flagellar motor switch protein FliM [Mesorhizobium loti MAFF303099]
 gi|14023313|dbj|BAB49920.1| flagellar motor switch protein; FliM [Mesorhizobium loti
           MAFF303099]
          Length = 315

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 126/311 (40%), Gaps = 9/311 (2%)

Query: 10  TSPLHPI-----LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           TSP  P      ++ RL G  G+   +      +       L K    ++ + V +   +
Sbjct: 2   TSPGSPAQARSLIIERLVGDSGEAAQVIGTGRGMAERAAPLLQKSLTSELGVPVTVDLRA 61

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  + +       + F  +  + S+ S    +      +  ++  L G   ET      
Sbjct: 62  VEVSRVAEARSRAGDTFAMTIVASSTSSDAMTLVIDAPAIAIMVCTLFGGDPETPASPIE 121

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R LS +E  ++     Q++  LN   S  +     L     +   +   + L +     I
Sbjct: 122 RDLSQIEVDVSTMLFQQVAQALN--GSGRRSLDLRLPVPRAMSGTEAKRHVLRDGAALRI 179

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            + ++    + +  + +PQ  +L +   + S+            + F+ +  +  V ++ 
Sbjct: 180 VLGISTPADSGTVTVTMPQRIVLASRDSAASTAGDDHG--PSWRERFSEEVMRSTVALEA 237

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            + L + TL D+ +L++GQVI F    ++ A LSA G+ ++ CE G++G+NYT+RI    
Sbjct: 238 TMPLARLTLGDLASLEVGQVIDFDETAQSRARLSARGQTLFVCEFGKLGQNYTVRIRHPF 297

Query: 305 NFDQKSLKNFL 315
           +  Q  +   +
Sbjct: 298 DAGQDFIDGLM 308


>gi|313672895|ref|YP_004051006.1| flagellar motor switch protein flim [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939651|gb|ADR18843.1| flagellar motor switch protein FliM [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 342

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 100/304 (32%), Gaps = 12/304 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K  S        R+       K   +   +L   + +         +    D++  S   
Sbjct: 36  KKISVYDFRRPDRV------SKEQIRSIRNLHDKFARNFSSSLSNFLRTITDVNLVSVDQ 89

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S  +   F+  S+     +  +  + +LV  +++ LLG     + ++  R L
Sbjct: 90  MTYGEFLMSLPDPTNFNIISMIPLDGSAVLEINPSLVFPIVDKLLGGPGLPMYKV--REL 147

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           + +E+ + +  I  +   L          +         +  +       NE V  +   
Sbjct: 148 TALEQHIMESVIYLLLKELEDTWKQVIP-NIKFRKEITENSPQVVQIVAQNEVVVLVVFE 206

Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +   +V+    L +P   L                 + +  D +D       +  + +  
Sbjct: 207 VKFADVSGMINLCLPAVVLEPILGKISSQDWLVGAKKVKGLDYLDRILDILMEAYLPLKL 266

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            I     T+ D++ L  G  I F H+ +   +L  N  + ++ E+G +G      I + +
Sbjct: 267 EIGPTILTVGDILELVEGDTIVFEHKAEEDVVLKVNNLDKFATEMGVIGVKKGALIKNIL 326

Query: 305 NFDQ 308
              +
Sbjct: 327 EESE 330


>gi|90415345|ref|ZP_01223279.1| flagellar motor switch protein FliM [marine gamma proteobacterium
           HTCC2207]
 gi|90332668|gb|EAS47838.1| flagellar motor switch protein FliM [marine gamma proteobacterium
           HTCC2207]
          Length = 330

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 33/296 (11%), Positives = 81/296 (27%), Gaps = 9/296 (3%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +   LT +             +   + +       E +     +     +  KF   + 
Sbjct: 37  AMRHDLTNEDSSLGVNIGAVDMINERFIRQFRLGLLEVLRTTPKVGMGDVKIMKFGEYLR 96

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ-LYNRSLSTVEKKL 134
                   +   L+            ++V   L+N  G       +    R  +  E  +
Sbjct: 97  DLSAPLSVNTIRLNPLRGYSMAVIEPSIVFAALDNFFGGFGRGFDKLPPGRLFTPTETSI 156

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NV 193
            K  +  +   L +  +     +   E        +       N+ V        +  N+
Sbjct: 157 IKIMLDVLFGSLKEAWAPILAINC--EHVNSEINPQFAQIADENDLVVVSRFGADLGRNI 214

Query: 194 ASSFVLIIPQETLLKTTLISLSSQ---NKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
           + +  L+ P  +L     +  S     +  +   ++             + +   +   +
Sbjct: 215 SGNIDLVYPYNSLKPIRDLLRSRVQTGDGDDISDKEWSAELQSAAVDAELEVTVELGEIE 274

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           TTL     +  G ++ F       A +  N   ++  ++G  G     RI   +  
Sbjct: 275 TTLSKFEAMSEGDIVYFSK--SEHARVYVNSVPVFDADVGANGSQMAARIIKPLAP 328


>gi|333004050|gb|EGK23584.1| flagellar motor switch protein FliM [Shigella flexneri K-272]
 gi|333017823|gb|EGK37130.1| flagellar motor switch protein FliM [Shigella flexneri K-227]
          Length = 268

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 71/246 (28%), Gaps = 8/246 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+       +   +    +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                  +     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     + ++   + S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLK 249
                 
Sbjct: 263 ANFADI 268


>gi|213028082|ref|ZP_03342529.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 247

 Score =  185 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 72/241 (29%), Gaps = 8/241 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 14  GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 67

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 68  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 127

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R  +  E+++  R +       +                  +     N     N+ V 
Sbjct: 128 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 186

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
               ++ I N+   F + +P   +     + ++   + S ++ ++  D   R+     + 
Sbjct: 187 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 246

Query: 242 I 242
           +
Sbjct: 247 L 247


>gi|163758006|ref|ZP_02165094.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica
           DFL-43]
 gi|162284295|gb|EDQ34578.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica
           DFL-43]
          Length = 315

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 125/308 (40%), Gaps = 2/308 (0%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
             +    +T    P LL R+ G  GD   IE    SL       L + F+   ++ +   
Sbjct: 4   SAKDSKTDTYEFDPELLDRMIGAKGDAAVIEAKCHSLQSAMCGPLERAFEMATNVHLSAR 63

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               Q G    ++  F ++ VF    +  WS +    C   LVI ++E LLG S      
Sbjct: 64  PGEIQQGSRRQLLSVFGQDAVFCDTWIEGWSRDISALCGTKLVIAMVECLLGGSDPEELD 123

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R LS +E  ++     Q++  L +  S    +         +D  +   +   +   
Sbjct: 124 IAARPLSGIELDMSLVVFEQLNDTLREVASKDPTAKAGAGKP-MLDIPEAEDDPKPDFHA 182

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
             I + +   +V +   LI+PQ  LLKT  I  S +N      +D  +    +  +  +N
Sbjct: 183 AAITLELQFGSVVTPLTLILPQSILLKTKPI-TSKKNAPNAVDDDWAERLNARVSRSQIN 241

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   + L    + ++  L++G +I F         LSANGK +Y+C LG+ G  Y +++ 
Sbjct: 242 LQAAVALAPLPVGEISRLQVGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVKVE 301

Query: 302 DRINFDQK 309
                D+ 
Sbjct: 302 GDAGPDEN 309


>gi|319790436|ref|YP_004152069.1| flagellar motor switch protein FliM [Thermovibrio ammonificans
           HB-1]
 gi|317114938|gb|ADU97428.1| flagellar motor switch protein FliM [Thermovibrio ammonificans
           HB-1]
          Length = 347

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 10/302 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           +       P     +  +                L   + K   +  +  +     +S  
Sbjct: 22  EESKPEVVPFDFSQVEHIKKGG------VPGLELLIERWVKIYREDVRRLVPQVGMVSKE 75

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S    +F++ +        ++  S+  +  NF     + LV  ++  + G       ++ 
Sbjct: 76  SVYITRFNNFLAKIPMPASYTIVSMKPFKENFLFVLDSRLVFVVISVMFGG-PAKPFKIE 134

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R  + +E ++ +  +        Q        +  +E                NE V  
Sbjct: 135 GREFTKLEMRIIQDIVKIALEDFEQVWKEVYPIT--VEMKSIELNPALARIVSGNEKVIV 192

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
           +  +M IE   + F    P    +    +  S ++    +    I     K  + N+ + 
Sbjct: 193 VECSMDIEGYEAPFFFCFPYGMFMPIKDLIFS-ESLFAEKDPVWIRHLGEKLLKTNLRVW 251

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +  KK ++K+V++ K G  +     +     L       +  +LG+V   Y   + D 
Sbjct: 252 LELTRKKFSVKEVLSWKEGDKLQLDVSKGDLLKLYVEESPKFYAKLGKVKDRYAALVYDF 311

Query: 304 IN 305
           IN
Sbjct: 312 IN 313


>gi|117928062|ref|YP_872613.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus
           11B]
 gi|117648525|gb|ABK52627.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus
           11B]
          Length = 314

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 89/302 (29%), Gaps = 8/302 (2%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
            G   H  +    P    R        +   +        + +    +    + +   + 
Sbjct: 11  TGPRTHARSREPKPYDFRR---PNKLNRAHVRTLHIAYETFCRQFTTVLTSTLGVFSLVE 67

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +   + S       +  SL        +       +  ++ +LG       Q
Sbjct: 68  LVAVEQMSYVDYVESLPTPTFLALISLDPLQGTGILQLPLETAMLCVDRVLGGPGS--AQ 125

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
              R  + VE ++ K    +    L        + SP++         +     + ++ V
Sbjct: 126 QPTRLPTDVETEIMKMVTRRAVQELRYAFEGLVQVSPDVIGIET--NPQFAQAAVPSDIV 183

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
              ++ + + +   +  L+IP   L      + S  +    +  E        +   + +
Sbjct: 184 VVASLEIKVGDQDGAATLMIPFTGLYPVLEAAASPKRGDRRDLLERSQAALRARLEDVEI 243

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +  +      T  +++ L +G V+   H      +++A G        G  G+     +
Sbjct: 244 EVAVQFPYVALTPHELLNLSVGDVLSLRHPTNAPLLITAEGIPFAYAVPGSNGRQAACLV 303

Query: 301 TD 302
            +
Sbjct: 304 VE 305


>gi|237755434|ref|ZP_04584059.1| flagellar motor switch protein FliM [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692398|gb|EEP61381.1| flagellar motor switch protein FliM [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 322

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 92/299 (30%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
              P     L ++                L   + K   +  + +  +   +S     + 
Sbjct: 28  KEKPFDFSRLEKIQKGGFQ------GLEVLFEKWVKIFREEIRAEFPVVNMVSKGKIATM 81

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +F   I        ++  ++        +   + +V  L+  L G       ++  R  +
Sbjct: 82  RFGDFIGKIPLPASYTIFNMKPLKDPSLLIIDSRVVFNLVSALFGG-GARPFKIEGREFT 140

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E ++ ++ +  +     +           +E                 E V    + +
Sbjct: 141 KLEIRIIEKLVDIVLGSFEKIWKDIYPIE--IERKSIEFNPILVRIVSHAEKVIVAEIMI 198

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
            IE +        PQ   L    I  +    S   S +      +K  ++N+N+   ++ 
Sbjct: 199 DIEGLEVPLTFTFPQMLFLPIKDILFTDTFGS-EVSPEWRKELIKKLLKVNLNLTLELDK 257

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +++ +  ++G  I    ++     L    K  +   +G++ K +   IT  I  +
Sbjct: 258 FSVLVEEFLNYEVGTEIILNKKQSEELDLKVEDKVKFKASIGKLDKKFAAMITKIIKEN 316


>gi|296531735|ref|ZP_06894561.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
           49957]
 gi|296267934|gb|EFH13735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
           49957]
          Length = 353

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 3/291 (1%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
           P            +     +   +     + +    ++    + D+     +  +    +
Sbjct: 50  PKRGLEALVGGAVRYEKLPMLDIVVDRLARLMTSSSRKFTADNADVVIDRTRPVRVGAFL 109

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            +     +     +  W         + L+ ++++ LLG     +  +  R  + +E+  
Sbjct: 110 DTVTLPALIGIIRIEEWDGYCLAALDSRLIGSIVDILLGGRRNALQPIEGRPYTPIERTF 169

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
            ++ ++ ++  L++       +S  LE F                   T    +T+E   
Sbjct: 170 VEKFVSVVTNDLSRAFEAVSPASFRLERFE--ITPSYALITKPTAAALTFRAEITMEGRG 227

Query: 195 SSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
                +IP  +L     +       K            A +  + +V +   I  +    
Sbjct: 228 GFIDFLIPYASLEPVRDLLSQEVLGKKSGGDTIWRSHLAEELPRASVELTAVIESRTVPF 287

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +V + + G V     R++    +   G  +    L    +   +R+ D +
Sbjct: 288 SEVASWQPGSVFVLDKRQEDPVDVFCQGLMVCRATLATKDERVVLRVEDCV 338


>gi|225850288|ref|YP_002730522.1| flagellar motor switch protein FliM [Persephonella marina EX-H1]
 gi|225646133|gb|ACO04319.1| flagellar motor switch protein FliM [Persephonella marina EX-H1]
          Length = 323

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 92/297 (30%), Gaps = 11/297 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            + +P     +  +                +   + K      ++       +   +   
Sbjct: 28  SDIAPFDFSEVEHIKKGG------LPGLEMIFERWIKIYRDDVRKITPRINMVWRENIYI 81

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            +F+  +        ++  ++     N  +   + LV T++  L G       ++  R  
Sbjct: 82  TRFNTFMLKIPLPSSYNIFTIRPLKENALLIIDSRLVFTIISVLFGG-PAKPFKVEGREF 140

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           + +E K+ +  +           ++       +E                NE V  +   
Sbjct: 141 TKLETKIVEDLVNSALKSFESVWNSIYPV--VIELRSIELNPNLAKIVSPNEKVVVVECR 198

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
           M I+   + F    PQ   L    I  +  +   ++          K  +LN+ +   I 
Sbjct: 199 MDIDGYEAPFYFCFPQSMFLPIKEIIYTQVS--VSEDPIWKKNLDEKIRKLNLKLTMEIA 256

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
             +  ++D+++ K G  +     +     L    +  ++ +LG+V   Y   I + +
Sbjct: 257 KLQFKIRDILSWKEGSELDLGVTKDDIFRLYVEDRHKFNVKLGKVNNKYAAMIVEPV 313


>gi|89068711|ref|ZP_01156097.1| possible flagellar motor switch protein FliM [Oceanicola granulosus
           HTCC2516]
 gi|89045674|gb|EAR51736.1| possible flagellar motor switch protein FliM [Oceanicola granulosus
           HTCC2516]
          Length = 316

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 6/297 (2%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           +  ++            +   +   Y   L    K    +  D++  S         +  
Sbjct: 15  VEEQIIRLSSLNFERMPMLEVVFDRYVMALASAMKSFSGMPFDVTLRSFDYVTCGTALSG 74

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLA 135
                + +  + + WS N  +  S +L+ ++LE +LG            RS + +E++  
Sbjct: 75  LPAPSLSALTTATPWSGNVLMTLSPDLLFSVLEVMLGGREGRGRQLWKPRSFTAIERRFG 134

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
            R    I    +Q      E S  ++        +      S      + +++T+     
Sbjct: 135 GRLARMILDEFSQSFRQLSEVSFEIDSLESA--PETIAIAPSGSPAVWVTLDLTVGERGG 192

Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
           +   +IP   L     +                      K     V +   ++  +  ++
Sbjct: 193 ALYFLIPYTALDTVRPVLNQPFLGGKIGGDTSWRKDLEEKIEDTTVTLTASLHRLRVPVQ 252

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG-KNYTIR-ITDRINFDQK 309
           + +  + GQ I      +    +    + ++  ++GR       +R I +    +  
Sbjct: 253 EALGWRKGQTIDLGISAEQPVDVVCGERRMFRGQMGRRATGQVALRLIEEDTGTEAD 309


>gi|68164513|gb|AAY87242.1| predicted flagellar motor switch protein [uncultured bacterium
           BAC17H8]
          Length = 321

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 96/307 (31%), Gaps = 9/307 (2%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           G   +  +  +    +        D   +        +   + +    +F   + +   I
Sbjct: 20  GAETNAPSGIMDGDEVRPFQFGSDDLSLLGDYHALRIINERFARLARSVFLPMLRIQPRI 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S    +   F       +     + + +     N     + N +  L  +  G     +P
Sbjct: 80  SSFPPEVKTFDEYTAGIENFMSLNISRIEELRGNMLSVMTPNFISVLTNSYYGGKITALP 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
              +   +  E+++ +     ++  L             +         +  +     EF
Sbjct: 140 SKKS-EFTATEERIIELVTDGLNETLQVAWRDLMPIK--ITYQNREINPQFASFVDGAEF 196

Query: 181 VTTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQL 238
           V   +  + + +  A+SF +I P +TL        S  Q      +    +   R    +
Sbjct: 197 VIICSFVVQLPDTDAASFDIIYPLQTLKPIAAQLRSRLQADVAEDNHTWREKMERAVLNI 256

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +  R+     ++ +++ +++G   P          +  + ++ +  +LG VG N  +
Sbjct: 257 PLPVTARLGQPVVSMYNLINMQVGDTFPI--TIGEGVEVRIDTEDAFIGDLGDVGGNAAV 314

Query: 299 RITDRIN 305
            +  R+ 
Sbjct: 315 NLKSRLK 321


>gi|221639474|ref|YP_002525736.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|221160255|gb|ACM01235.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
          Length = 323

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 7/273 (2%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
               +   + +    +F   + L   IS    +   F     S       + + +     
Sbjct: 53  ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
           N  I      +  L ++  G     +P       +  E+++ +    +++  L       
Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDL 171

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212
              +  +      + ++  +     + V   +  + + N   +SF ++ P +TL   +  
Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229

Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             S  Q+   +      +   R    + + +  R+   +  L+ ++ ++ G V+P     
Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                L   G+ I+    G  G    + +T R 
Sbjct: 289 -EAVSLLVEGQPIFEAAPGERGGQAALNLTRRH 320


>gi|77463631|ref|YP_353135.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
 gi|126462463|ref|YP_001043577.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|77388049|gb|ABA79234.1| Flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
 gi|126104127|gb|ABN76805.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 323

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 7/273 (2%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
               +   + +    +F   + L   IS    +   F     S       + + +     
Sbjct: 53  ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
           N  I      +  L ++  G     +P       +  E+++ +    +++  L       
Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDL 171

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212
              +  +      + ++  +     + V   +  + + N   +SF ++ P +TL   +  
Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229

Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             S  Q+   +      +   R    + + +  R+   +  L+ ++ ++ G V+P     
Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                L   G+ I+    G  G    + +T R 
Sbjct: 289 -EAVSLLVEGQPIFEAAPGERGGQAALNLTRRH 320


>gi|157736463|ref|YP_001489146.1| flagellar motor switch protein FliM [Arcobacter butzleri RM4018]
 gi|157698317|gb|ABV66477.1| flagellar motor switch protein FliM [Arcobacter butzleri RM4018]
          Length = 368

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 105/317 (33%), Gaps = 11/317 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +  KN S        R+T          K  +++     +         +   VDI  T+
Sbjct: 34  AKEKNYSIYDFKKPNRVTLDQ------LKALTTMHDKMLREFINDLSSMLRKIVDIKLTT 87

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +   I S  +    S  S+        I C+  +   ++ +LLG+         +
Sbjct: 88  IEQMTYGEFILSIPQVTSLSTLSMKPLDGRIVIECNPTISHKVIADLLGSGAVNTMDNLD 147

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R L+ +E K+ +        +L +  S     +  +E                ++ V  +
Sbjct: 148 RELTEIEIKVLEHFYKMFIKILYKTWSDISSLNFRIESSDTNAN--AIQIVSDHDIVLLV 205

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
              +TI+  +    +  P   +            ++ +N+     +          + ++
Sbjct: 206 VFEITIDEDSGFLSICYPISYIEPLLNKIVDKIFSEGKNKKLSRKEDIKTLISGARMKVE 265

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             +   + T  +++ LK   +I F      + A +  N KE +S   G       ++I  
Sbjct: 266 AIMAETELTTAEILNLKENDIIVFNKNASSSSATVYINKKEKFSAVSGISNNRKAVQIKA 325

Query: 303 RINFD-QKSLKNFLHKR 318
            ++ + Q++L      R
Sbjct: 326 NLDREKQETLDTLREMR 342


>gi|315635624|ref|ZP_07890887.1| flagellar motor switch protein FliM [Arcobacter butzleri JV22]
 gi|315479921|gb|EFU70591.1| flagellar motor switch protein FliM [Arcobacter butzleri JV22]
          Length = 368

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 105/317 (33%), Gaps = 11/317 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +  KN S        R+T          K  +++     +         +   VDI  T+
Sbjct: 34  AKEKNYSIYDFKKPNRVTLDQ------LKALTTMHDKMLREFINDLSSMLRKIVDIKLTT 87

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +   I S  +    S  S+        I C+  +   ++ +LLG+         +
Sbjct: 88  IEQMTYGEFILSIPQVTSLSTLSMKPLDGKIVIECNPTISHKVIADLLGSGAVNTMDNLD 147

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R L+ +E K+ +        +L +  S     +  +E                ++ V  +
Sbjct: 148 RELTEIEIKVLEHFYKMFIKILYKTWSDISSLNFRIESSDTNAN--AIQIVSDHDIVLLV 205

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
              +TI+  +    +  P   +            ++ +N+     +          + ++
Sbjct: 206 VFEITIDEDSGFLSICYPISYIEPLLNKIVDKIFSEGKNKKLSRKEDIKTLISGARMKVE 265

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             +   + T  +++ LK   +I F      + A +  N KE +S   G       ++I  
Sbjct: 266 AIMAETELTTAEILNLKENDIIVFNKNASSSSATIYVNKKEKFSAVSGISNNRKAVQIKA 325

Query: 303 RINFD-QKSLKNFLHKR 318
            ++ + Q++L      R
Sbjct: 326 NLDREKQETLDTLREMR 342


>gi|332558487|ref|ZP_08412809.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides WS8N]
 gi|3435105|gb|AAC32319.1| flagellar switch protein [Rhodobacter sphaeroides]
 gi|332276199|gb|EGJ21514.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides WS8N]
          Length = 323

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 7/273 (2%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
               +   + +    +F   + L   IS    +   F     S       + + +     
Sbjct: 53  ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
           N  I      +  L ++  G     +P       +  E+++ +    +++  L       
Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDL 171

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212
              +  +      + ++  +     + V   +  + + N   +SF ++ P +TL   +  
Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229

Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             S  Q+   +      +   R    + + +  R+   +  L+ ++ ++ G V+P     
Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                L   G+ I+    G  G    + +T R 
Sbjct: 289 -EALSLLVEGQPIFEAAPGERGGQAALNLTRRH 320


>gi|2315249|emb|CAA74715.1| flagellar switch protein [Rhodobacter sphaeroides]
          Length = 323

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 88/273 (32%), Gaps = 7/273 (2%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
               +   + +    +F   + L   IS    +   F     S       + + +     
Sbjct: 53  ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
           N  I      +  L ++  G     +P       +  E++  +    +++  L       
Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERCIELVTDRLNVALQVAWRDL 171

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212
              +  +      + ++  +     + V   +  + + N   +SF ++ P +TL   +  
Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229

Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             S  Q+   +      +   R    + + +  R+   +  L+ ++ ++ G V+P     
Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                L   G+ I+    G  G    + +T R 
Sbjct: 289 -EALSLLVEGQPIFEAAPGERGGQAALNLTRRH 320


>gi|117926842|ref|YP_867459.1| flagellar motor switch protein FliM [Magnetococcus sp. MC-1]
 gi|117610598|gb|ABK46053.1| flagellar motor switch protein FliM [Magnetococcus sp. MC-1]
          Length = 332

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 94/309 (30%), Gaps = 11/309 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
                 K T+P           K   +         +       L     +K+  +V + 
Sbjct: 33  SASKDEKKTTPFT------FGQKTAIRVGALPGLDLINEHLASQLSFKLTQKVGREVHVQ 86

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             +  +  F   +H+ +     +   +    S   I    +++ T+LE   G   ++  +
Sbjct: 87  PKTTTNQVFGRFLHTVEPPIFINILRVEPSQSMALISIDGDVMYTVLEGFFGGPGDS--E 144

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
              R+ S  E K+  R +      +          S  L      +  +       +E V
Sbjct: 145 RPFRNFSPFEMKVIDRIMDVAREQIELSWKKLDP-SFRLVLARWENQPQFAAVMPLDETV 203

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS--EDLIDPFARKTYQLN 239
             I  ++ + +   +  +  P   L            + E        +D    +   + 
Sbjct: 204 FLITFSVEVGDAEGNITICFPAVILELFKQQLKQGFQQKEEVEGASAWMDALKNELSLVR 263

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V++   +   + +++ ++ LK+G              +   G + + C  G V     IR
Sbjct: 264 VDMTPVMGTVEMSVEQMLNLKVGDEFILGTDMSEEMAVQIGGMDKFMCHAGVVDGKRAIR 323

Query: 300 ITDRINFDQ 308
           IT  +   +
Sbjct: 324 ITRTVQPQK 332


>gi|260466628|ref|ZP_05812816.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259029634|gb|EEW30922.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 315

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 122/311 (39%), Gaps = 9/311 (2%)

Query: 10  TSPLHPI-----LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           TSP  P      ++ RL G  G+   +     ++       L K     + + V +   +
Sbjct: 2   TSPGSPAQARSLIIERLVGDSGEADQVIDAGRAMAERAVPLLQKGLSSGLGVPVIVDLKA 61

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  + +       +NF  +     + S    +      +  ++  L G   +       
Sbjct: 62  VEVSRVTEARSRAGDNFAMTVVGSPASSDAMTLVIDAAAIAIMVSTLFGGDPDMPVSPIE 121

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R LS +E  ++     +++  LN   S  +     L     +  ++   + L +     I
Sbjct: 122 RDLSPLEADVSTMVFQEVAQALN--GSGQRSLELRLPAPRAMSGIEARRHVLRDGAAIRI 179

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            + ++    + S  +++PQ  +L       S+       S      F+ +  +  V ++ 
Sbjct: 180 VLGISTPVDSGSITVMMPQRIVLAGRDGIASASEADPGTS--WRARFSEEVMRSTVALEA 237

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            + L + TL D+  L++GQVI F    ++ A L A G+ ++ CE G++G+NYT+RI    
Sbjct: 238 TMPLARLTLGDLAKLEVGQVIDFEETAQSRARLGARGQTLFVCEFGKLGQNYTVRIRHPF 297

Query: 305 NFDQKSLKNFL 315
           +  Q  +   +
Sbjct: 298 DAGQDFIDGLM 308


>gi|146277687|ref|YP_001167846.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555928|gb|ABP70541.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 323

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
               +   + +    +F   + L   IS    +   F     S       + + +     
Sbjct: 53  ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
           N  I      +  L ++  G     IP       +  E+++ +    +++  L       
Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHIPTTRT-EFTATEQRVIELVTDRLNVALQVAWRDL 171

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212
                +       + ++  +     + V   +  + + N   +SF ++ P +TL   +  
Sbjct: 172 MAL--SFTVVSREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229

Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             S  Q+   +      +   R    + + +  R+   +  L+ ++ ++ G V+P     
Sbjct: 230 LRSRMQSDFVDDDRTWREKLERAILSIPLTLSARLCEPEVPLRQLMQIQPGDVLPVQLT- 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                L    + I+    G  G    + +T R
Sbjct: 289 -EAVSLLVENEPIFEGVPGERGGQAALNLTRR 319


>gi|152990356|ref|YP_001356078.1| flagellar motor switch protein FliM [Nitratiruptor sp. SB155-2]
 gi|151422217|dbj|BAF69721.1| flagellar motor switch protein FliM [Nitratiruptor sp. SB155-2]
          Length = 326

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 11/301 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            +  P     L  +                +   + K   +  ++ +     +S  S   
Sbjct: 33  SDIRPFDFDELESIKKGGF------PGLELIYERWVKLFREEVRKVLPKINMVSKESIYI 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            +F++ + +      ++  ++        +   + LV T++  + G       ++  R  
Sbjct: 87  TRFNNFMFNIPMPSSYTTFTMRPLKETALLVIDSRLVFTVISVMFGG-PAKPFKVEGREF 145

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           + +E  + K  I      L +  S        +E                NE V      
Sbjct: 146 TKLETYVIKDFIDIALESLQEVFSAVYPVD--VEKRSIELNPALARITSGNEKVIISECI 203

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
           + I+   +      P    L    I  S                     Q NV +   + 
Sbjct: 204 VDIDGFEAPIYFCFPHGMFLPIKEIIYS--EFQGEIDPVWKRRVNEILLQTNVEVALELP 261

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            +   ++DV+  K G  +     ++  A L  + K  + C++G++ + Y   + +    +
Sbjct: 262 KQTYLMRDVLQWKEGMELILDIEKEEDAYLRISDKYKFRCKVGKIKEKYAALLKNEHQEE 321

Query: 308 Q 308
           +
Sbjct: 322 E 322


>gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 325

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 89/273 (32%), Gaps = 7/273 (2%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
               +   + +F   +F   + +   IS    +   F             + + +     
Sbjct: 56  ALRMINERFARFARSVFLPMLRVQPRISSFPPEVKSFDEYAAGIDSFMSLNISRIEELRG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
           +     S + +  L  +  G   E   +      +  E+++ +     ++  L       
Sbjct: 116 SMLTVLSPSFISVLTNSYYGGKIEG-NKSRRPEFTATEERVIQLINRGLNETLENSWRDL 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLI 212
            E +  L         +  +     + V   +  + + ++ A+SF +I P +TL      
Sbjct: 175 MEIT--LSHQSSEVNTQFASFVDGADLVIICSFVVQLPDIDAASFDVIYPLQTLKPIAAQ 232

Query: 213 SLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             S  Q+      +   D   R    + + +  +++    ++  ++ LK G V P     
Sbjct: 233 LRSRVQSDRIEDDQSWRDRMERAVLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPIQ--I 290

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                +  +    Y  E+G VG    I +T RI
Sbjct: 291 GDGVEVLMDEHRFYYGEMGEVGGQSAINLTSRI 323


>gi|291562030|emb|CBL40846.1| Flagellar motor switch protein [butyrate-producing bacterium SS3/4]
          Length = 363

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 112/318 (35%), Gaps = 14/318 (4%)

Query: 3   GQSIHKNTSPLHPI----LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
            +   ++  PL P     +           K   KI  S+   Y + L         +  
Sbjct: 24  QEKKTESVQPLSPEEKNYIKYDFFSPRKFTKEKMKILRSVFENYARILTSQINGIFRVMT 83

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLG 113
           DI+    Q  ++   +++  EN   +            S    +  +  +VITL+ ++LG
Sbjct: 84  DITVLDVQERRYYEYVNALHENDCMTMIDASIAGEEKMSVPLMLFVTPGMVITLINHMLG 143

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  +   R  S VE+ L KR +  ++  L    S     + ++E  +  +      
Sbjct: 144 GEDVVAVEDDYR-YSDVERALYKRIVEYMTGALKDGFSNYVSIAFSVE--HVEENPTMVQ 200

Query: 174 NRLSNEFVTTINMNMTIENVASS-FVLIIPQETLLKTTLISLSSQNKSEN-QSEDLIDPF 231
           +   +E V  I +N+ I   A     + +P   L        + ++ +     +D  +  
Sbjct: 201 DVGLDETVAIIILNVDISGQAQEKVKICLPGNLLTVIFHSIDNRKHLARGFSYQDNKEKI 260

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                   + I  ++   +  LK +  +++G VI     + +   L    +  ++ ++G 
Sbjct: 261 MDNIRYSKLPITGQLGTVQLDLKGLYQIQVGDVIDLGKPKDSPVRLFVGRQPWFTGQMGC 320

Query: 292 VGKNYTIRITDRINFDQK 309
             KN  ++I   I    +
Sbjct: 321 YKKNVAVKIEKCIASQIE 338


>gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
 gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
          Length = 315

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 93/295 (31%), Gaps = 4/295 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            L   +  +  +          +       L    K    +  +I  TS +   +   + 
Sbjct: 11  SLEETMIRQARESFQRLPTLEIIIDRLLLALVPDLKSYCTIAPEIELTSLEYMPYEDAME 70

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           S +   + + A+   W S        +L+ ++LE +LG    T  +   R L+ +E+KL 
Sbjct: 71  SIQSPSLIAIANAEGWGSQIACVVEPDLLFSVLEIMLGGRRATTQEWKPRGLTAIEQKLG 130

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +R        L QC+          +        +             + M+M  E+ + 
Sbjct: 131 RRLAELSLKGLAQCLQDVSPVQ--FDIQSLESNPRSVMLAAPRTATVLVRMHMQFEDRSG 188

Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              L++P  TL + +                +       +     V I   +      L 
Sbjct: 189 HMALVLPYGTLDEVSAQLAQPFLGGRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLH 248

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR-VGKNYTIRITDRINFDQ 308
           +V+  K GQVI       T  +   N + ++    G+       +R+   +   +
Sbjct: 249 EVLEWKTGQVIDLGMTVDTPVVGMVNAQPMFQAAFGQRSNGALALRVIQSLLPKE 303


>gi|325295396|ref|YP_004281910.1| flagellar motor switch protein FliM [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065844|gb|ADY73851.1| flagellar motor switch protein FliM [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 348

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 93/308 (30%), Gaps = 12/308 (3%)

Query: 2   RGQSIHKN--TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
              S  +    +P    L+  +                L   + K   +  +  +     
Sbjct: 20  NSSSEEQKLEVAPFDFSLVEHIKKGG------VPGLELLLERWIKIYSEEIRRLVPQINM 73

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           ++  S    +F++ +        +S  S+     NF +   + LV  ++  + G      
Sbjct: 74  VTKESVYITRFNNFMSKIPLPASYSIVSMKPLKDNFLLVLDSRLVFVVISVMFGG-PAQP 132

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  R  + +E ++    +    +               L+                N+
Sbjct: 133 FKIEGREFTKLETRIIDDIVKISLSTFQHTWKDVYPVEFELKSIEL--NPALARIVSGND 190

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
            V  +   M ++   + F    PQ   L    +  S       +         +K  +  
Sbjct: 191 RVIVVECTMDVDGYEAPFFFCFPQGMFLPIKELIFSEA-VFAEKDPVWEKHLTKKLLKTE 249

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +  K   L+++++ K G  I     +     L    K  +  +LG++   Y   
Sbjct: 250 LKLTLELTRKNFFLRELLSWKEGDEILLDISKDEFVKLYVEDKPKFWAKLGKIKDKYAAL 309

Query: 300 ITDRINFD 307
           + D IN +
Sbjct: 310 VVDMINGE 317


>gi|319781690|ref|YP_004141166.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167578|gb|ADV11116.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 315

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 115/300 (38%), Gaps = 4/300 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
           +++ RL G  G+   +     ++       L K    +  + V +   + +  +      
Sbjct: 13  LIIERLVGDSGEAAQVIDAGRAMAERAVPLLQKTLTSEFGVPVVVDLKAIEVSRVPEARS 72

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
              + F  +    S+ S    +      +  ++  L G   +       R LS +E  ++
Sbjct: 73  RAGDTFAMTVIGSSASSDAMTLVIDAPAIAIMVCTLFGGDPDLPASPIERDLSQIEIDVS 132

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
                Q++  LN   S  +     L     +   +     L +     I + ++    + 
Sbjct: 133 TMVFQQVAQALN--GSGKRSLDLRLPAPRAMSGTEAKRYVLRDGAAIRIVLGISTPADSG 190

Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
           +  + +PQ  +L +   ++   +            F+ +  +  V ++  + L + TL D
Sbjct: 191 TVTVTMPQRVVLASRDGAVPVSDDDHG--PSWRARFSEEVMRSTVALEATMPLARLTLGD 248

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +   +IG VI F    ++ A LSA GK ++ CE G++G+NYT+RI    +  Q  +   +
Sbjct: 249 LAGFEIGDVIEFEETAQSQARLSARGKTLFVCEFGKLGQNYTVRIRQPYDAGQDFIDGLM 308


>gi|188997560|ref|YP_001931811.1| flagellar motor switch protein FliM [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932627|gb|ACD67257.1| flagellar motor switch protein FliM [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 322

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 87/275 (31%), Gaps = 4/275 (1%)

Query: 35  SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94
              L   + K   +  + +  +   +S     + +F   I        ++  ++     +
Sbjct: 48  LEVLFEKWVKIFREEIRTEFPVVNMVSKGKIVTMRFGDFIGKIPLPASYTIFNMKPLKDS 107

Query: 95  FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
             +   + +V  L+  L G       ++  R  + +E ++ ++ +  +     +      
Sbjct: 108 SLLIIDSRVVFNLVSALFGG-GARPFKIEGREFTKLEIRIIEKLVDIVLGSFEKIWKDVY 166

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
                +E                 E V    + + IE +        PQ   L    I  
Sbjct: 167 PIE--IERKSIEFNPILVRIVSHAEKVIVAEIMIDIEGLEVPLTFAFPQMLFLPIKDILF 224

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +    S   S +      +K  ++N+ +   ++     +K+ +   +G  I    ++   
Sbjct: 225 TDTFGS-EVSPEWRKELIKKLLKVNLKLILELDKFSVLVKEFLNYDVGTEIILNKKQSEE 283

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             L    K  +   LG++ K +   IT  I  +  
Sbjct: 284 LDLKVEDKVKFKASLGKLDKKFAAMITKVIKENDD 318


>gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
           DSM 13965]
          Length = 321

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 31/299 (10%), Positives = 89/299 (29%), Gaps = 6/299 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M      K       + L          K   +  + +     +        ++   V++
Sbjct: 1   MNQGVRRKGVRRAPVVRLYDFRRPDKFSKEQLRTLAMVHENVARLATGFLSGQLRTVVEV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +    +   +   I       V +  +L    S+  +    ++   +++ L         
Sbjct: 61  AVLEVEETTYGEFITGLSNPTVLAVFNLPPLESSAVMDVEPSIAFPMVDRLF--GGPGTG 118

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               R L+ +E  + +  +  +   + +  S   +    L              +  NE 
Sbjct: 119 AATGRGLTEIETVVMRAILQGLLGSVAEGWSQLVQVQGELVT--VAANPLFVQVQAPNEI 176

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQL 238
           V  + +++       ++ + +P   L          Q  +          + +     Q+
Sbjct: 177 VVRVVLSVRFGQQEGAWRICLPYPLLEPLLPRLAVHQYYARETRSQARSREQWEEGLRQV 236

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
            + +   +   + T++ ++ L  G V+P   R  +   +   G+  +    G+ G+   
Sbjct: 237 PLPVQVVLGRAQLTVRQLLDLAPGHVLPLDTRAGSLVDILVGGRLKFRGLPGQHGQRLA 295


>gi|239628949|ref|ZP_04671980.1| flagellar motor switch protein FliM [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519095|gb|EEQ58961.1| flagellar motor switch protein FliM [Clostridiales bacterium
           1_7_47FAA]
          Length = 296

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 96/286 (33%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K       +L   + + L       +    +IS       ++    +S  ++ +F   +L
Sbjct: 15  KERMSTVENLYDSFARALAPYLTGLLQSYCEISINGIVEKRYQEFSNSVPDHSLFGMITL 74

Query: 89  SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           S        +   +     L   ++E LLG           R  + +EK + +  + +I+
Sbjct: 75  SPANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEYELT--RDFTDIEKAILQYVLGKIT 132

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
             L +      +   +L                  + V  + + + I+ +++   +++P 
Sbjct: 133 EFLGEAWGQYLDVQASLTGLQT--NPHLLQMSAQEDVVIQVELEVVIDKLSARLNMVMPA 190

Query: 204 ETLLKTTLI-----SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
             + + T       + S + + E + +       +   +  V +   ++      +D++ 
Sbjct: 191 PNVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLESEVELRAILHEFTLDAQDILQ 250

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           L  G VIP   +  +   +       +  + G       + I++ +
Sbjct: 251 LTPGDVIPLNKKVDSGISIYVEDVACFEAKAGHTRLRKAVEISNEL 296


>gi|91200230|emb|CAJ73274.1| similar to flagellar motor switch [Candidatus Kuenenia
           stuttgartiensis]
          Length = 318

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 14/300 (4%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q + K           R        +  ++    +       +   F + +   V +   
Sbjct: 31  QKVVKKVQHYDFRRPDRF------PREQKRQLQKISENMAVNMGLTFSQYVRTTVGVELI 84

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + +   +   ++SF +    S   L+ +     +       + +++  LG   +   ++ 
Sbjct: 85  AIEEFSYELFLNSFTDLVCASVVDLTPYRGKGCLTLDAGFCLAMIDRGLGGPGKIQQKI- 143

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
            R L+ +E+ +  + ++ +   +  C +   E    +        L+      + E +  
Sbjct: 144 -RPLTIIEESVVSQVLSNVLHSMCLCWNDVAEIEWQIAKTDM--DLRSLQVAHNTESMIA 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
           IN  ++ E    + V  +P  TL            ++    E+ I    +   Q+ + ++
Sbjct: 201 INFAISGELGTGTLVFCLPVATLEAVMGKI----TEATLNREEEIVIIKQTLNQVPLLVN 256

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           T +   + +  +++ L++G VI   ++      L  +    +    G  GK   I+IT  
Sbjct: 257 TILGTTQLSFNELINLRVGDVISLDNKITDHLSLEIDEVPKFFGTPGVSGKKLAIKITSV 316


>gi|149200770|ref|ZP_01877745.1| Flagellar switch protein FliM [Roseovarius sp. TM1035]
 gi|149145103|gb|EDM33129.1| Flagellar switch protein FliM [Roseovarius sp. TM1035]
          Length = 325

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 83/274 (30%), Gaps = 7/274 (2%)

Query: 35  SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94
              +   + +    +F   + +   IS    +   FSH     +     + A + +  SN
Sbjct: 57  LRMVNERFCRLARPVFLPFLRMHPRISAFPPEVKSFSHYCDELENFVSLTTARVDALRSN 116

Query: 95  FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
             I    N V  L     G +   +P       +  E ++ +     I   L        
Sbjct: 117 QLIMLPPNFVSLLTNAYYGGNIAYLPG-GRAEFTASETRVIEIVTKGIYRALEAAWRDLI 175

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLIS 213
                  +    D L+  T   S E V   +  + +     ++  LI P + L       
Sbjct: 176 PLD--FANPVHEDNLQFATFVESEEKVVCCSFIIQLPEADPATLDLIYPLQALKPIAARL 233

Query: 214 LS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
            S  Q+                   + +N+  R+      +  +  L+ G+V+P     +
Sbjct: 234 RSRMQSDQVADDLRWRSRLREAVMAVPLNVTARLAEPNVPISALTGLRPGRVVPVDLTLR 293

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
               L   G  ++  E G       + +T RI  
Sbjct: 294 P--QLLVEGTPLFDAEPGAQNGRAALSLTRRIEP 325


>gi|296274406|ref|YP_003657037.1| flagellar motor switch protein FliM [Arcobacter nitrofigilis DSM
           7299]
 gi|296098580|gb|ADG94530.1| flagellar motor switch protein FliM [Arcobacter nitrofigilis DSM
           7299]
          Length = 364

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 101/320 (31%), Gaps = 14/320 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S  KN S        R++ +        K  S+L     + L       +   VDI   S
Sbjct: 33  SKEKNYSIYDFKKPNRISNEQF------KAFSTLHDKMLRDLITDLSAMLRKIVDIKLYS 86

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +   I S  +    +  S+        I C+  +   ++  LLG+         +
Sbjct: 87  IEQMTYGEFILSIPQLTSLNTLSIKPLDGRIVIECNPGISHKIIAELLGSGSVASTDNLD 146

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R L+ +E ++       I + L +        +  +E                +E V  +
Sbjct: 147 RELTEIEVEIFDHFYKLIVSHLYKAWDEITTLNFKIE--SRDTNANAIQIISDHEIVLLV 204

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
            +  TI+  +    +  P   +             +  N+                +NI+
Sbjct: 205 VLEFTIDEESGFLSICYPISYIETLLNKIVTKIFAEGRNKKASRKKDITTLISGAKMNIE 264

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             +        +++ LK G VI F        + L  N KE +    G       ++I  
Sbjct: 265 AIMAETFLKTSEILDLKEGDVIVFNKNSTSATSKLYINKKEKFLAISGLSNNRKAVQIKA 324

Query: 303 RINFDQ----KSLKNFLHKR 318
            I+ ++    ++L+    +R
Sbjct: 325 NIDHEKMETLETLRGMREER 344


>gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
 gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
          Length = 320

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 94/303 (31%), Gaps = 9/303 (2%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
            +P  P +    T  +   + + ++       +   +  +    + +       S +   
Sbjct: 22  ANPGDPEVFD-FTRPVKLPRELLRVLQLCYETFSHRMATLLTSTLRVVCHAELISIEQLS 80

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           ++  +       + +   L        +  + +  +T +++LLG      P    R LS 
Sbjct: 81  YAEHMAELANPTLLAPVVLEPLPGTALLEMTLSTAMTSMDHLLGGKGGPQP---ARPLSD 137

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +E  L +  + Q    L   + +  +  P LE        +        + V      + 
Sbjct: 138 IETPLLRDLLDQALEQLRVGMESVADVRPELEGLEY--NPQLVQTSTPTDAVVVGYFELN 195

Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           +        L IP +T+L +        +         E   +        + V +  + 
Sbjct: 196 VGEEQGQVSLCIPLQTILPSLRSYRDKVAVSASERATREAARNAITAGLQNVPVAVSVKF 255

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              +    D+V L+ G VIP  HR      + A G+   +    + G      +    + 
Sbjct: 256 QSVRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFANAVATKRGTRLACLVVAGADS 315

Query: 307 DQK 309
           ++ 
Sbjct: 316 EEN 318


>gi|254437125|ref|ZP_05050619.1| flagellar motor switch protein FliM [Octadecabacter antarcticus
           307]
 gi|198252571|gb|EDY76885.1| flagellar motor switch protein FliM [Octadecabacter antarcticus
           307]
          Length = 326

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 101/277 (36%), Gaps = 7/277 (2%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
               +   + +    +F+  + +   I+    +   F      F      + + ++    
Sbjct: 52  ALRVINERFARLARTVFQPMLRVQPRITALPPEVKTFDEYCKEFPTLMCLTTSRINELRG 111

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
           +  +      + TL     G       +      ++ E ++ +     +S  L       
Sbjct: 112 SKMMVIQPEFISTLTNAYYGGVLGQKYKPST-EFTSTESRIIEIVTEGLSRNLLIAWQDL 170

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLI 212
              + + E     + L+  +     E V   +  + +     + F ++ P +TL      
Sbjct: 171 MPLTFSDE--SREENLQFASFVDGEETVIICSFTIELPQENKAKFDILYPLQTLKPIAAQ 228

Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             S  Q++  +      +   R   ++ + ++ +++  + +L+ ++ ++ G V P   R 
Sbjct: 229 LRSRMQSEVVDDDLTWRERLERAVTEVRLTVNVQLSKPRISLRQLIEVQKGDVYPIQLR- 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                +  +G+++++ ++G +     I IT+++N +Q
Sbjct: 288 -DGLSVLVHGQKMFAADIGEIAGFNAITITEKLNQNQ 323


>gi|284989543|ref|YP_003408097.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM
           43160]
 gi|284062788|gb|ADB73726.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM
           43160]
          Length = 321

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 91/280 (32%), Gaps = 6/280 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    +   ++       + +    +    +     +     +   +   + S  +
Sbjct: 27  DFRRPTKLSREHVRVLQIAQEAFARQTTTVLTTMLRAGARLELLGIEQHSYDDYVASLPD 86

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
               +  ++   +    +    ++ +  ++++LG S        +R ++ +E  +    +
Sbjct: 87  PCFLATFTIEPLAGKGVLAYPLDIAMAAVDHMLGGSGS--ADQPDRPMTVMETAITNHLL 144

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
            ++ + L    S   E  P L +       +       ++ V   +  + I + +    L
Sbjct: 145 GRLLSELAGSFSHIIELQPELSEIEY--NPQLAQAASGSDTVMVASYTIGIGSRSGEATL 202

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLI--DPFARKTYQLNVNIDTRINLKKTTLKDVV 257
           ++P  +       + S Q     Q++     +    +  Q+ V++  R    + + +D++
Sbjct: 203 VLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLTQVPVDVGVRFAPLEVSSEDLL 262

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           +L +G V+   H +     ++ N             +   
Sbjct: 263 SLAVGDVLLLRHPQDAPLEVTTNEVTFAYAIASNHRRRLA 302


>gi|160939629|ref|ZP_02086977.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437420|gb|EDP15184.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC
           BAA-613]
          Length = 296

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 95/286 (33%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K       +L   + + L       +    +I+       ++     S +++ +F   ++
Sbjct: 15  KERMSTVENLYDSFARALAPYLTGLLQSFCEININGIVEKRYQEFSSSVQDHSLFGMITM 74

Query: 89  SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           S        +   +     L   ++E LLG          +R  + +EK + +  + +I+
Sbjct: 75  SPANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEYD--LSRDFTDIEKAILQYVLKKIT 132

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
             L +      +   +L                  + V  + + + IE + +   +++P 
Sbjct: 133 EFLGEAWGQYLDIEASLTGLQT--NPHLLQMSAQEDVVIQVELEVVIEKLRARINMVMPA 190

Query: 204 ETLLKTTLISL---SSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVT 258
             + + T       +  +K +++ +         +   +  V +   ++      +D++ 
Sbjct: 191 PNVEELTSKFGYSFAVSHKKQDEDKQKSKRHYIEQHLLESEVELRAILHEFTLDAQDILQ 250

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           L  G VIP   +  +   L       +    G+      + I+  +
Sbjct: 251 LAPGDVIPLNKKVDSAVSLYVEDVACFEARAGQTKMRKAVEISREL 296


>gi|121602879|ref|YP_989408.1| flagellar motor switch protein FliM [Bartonella bacilliformis
           KC583]
 gi|120615056|gb|ABM45657.1| flagellar motor switch protein FliM [Bartonella bacilliformis
           KC583]
          Length = 323

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 113/316 (35%), Gaps = 7/316 (2%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
             ++  K       +L   +    G           +       L         L+  I 
Sbjct: 13  TQENEEKKQ----DVLAQHILRAAGLSSDDLMSFQYIFRDAASHLCSQINHYTPLEFTID 68

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             S  + K   I  +   + +    S   W ++      + LV  + E   GA+   I  
Sbjct: 69  VVSLDTLKIDKITQTIGTDTLLIDFSSDRWGNDVIFVLDSVLVELITETFFGATEPKIIN 128

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
              R  S  E  +++     ++  ++    T  +S             + NT       +
Sbjct: 129 RNGRPFSPTECSISEHFGKLLANAMDSVFGTGDKSLLIFTQTRKAQ--EFNTETFHQSQM 186

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTL-ISLSSQNKSENQSEDLIDPFARKTYQLNV 240
            +  +++      +   +++P+         I+ + +   +           ++  Q +V
Sbjct: 187 FSCTLSIKCGEAEAHLNILMPRSCHRPIHEAITRALRAPEKRMDPLWTKRLRKEVSQAHV 246

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            I+  +     TL +++ LK+GQV+P          L +  K +Y C LG++GKN++IR+
Sbjct: 247 QIEAFMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRSGDKSLYKCSLGKIGKNFSIRV 306

Query: 301 TDRINFDQKSLKNFLH 316
           TD I+ +++ +   +H
Sbjct: 307 TDPIDEEKEMINELVH 322


>gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
 gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
          Length = 395

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 104/295 (35%), Gaps = 9/295 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K   ++  S+   Y + L            DI+    +  ++   +++F EN   +    
Sbjct: 62  KDKIRLLRSIFDNYARILTSQVNGIFRTMTDITVLELRETRYYEYVNAFHENDCMTIVDT 121

Query: 89  ---SSWSSNFFIG--CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
                  SN  +    S  L +TL+ ++LG S   I    +   + VE  L KR +  I 
Sbjct: 122 YVQDKGKSNVPMMSYISPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIMEYIV 181

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIP 202
             L    S    +   +                 +E V    MN+ I  +A     + +P
Sbjct: 182 HALGDGFSNYISAEFKIAKIET--NPSMVQEVGLDETVVLAVMNVDISGLAMERIRICLP 239

Query: 203 QETLLKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
              L     I  + ++ +     E+  D         +  +  ++ + K  ++D+  LK+
Sbjct: 240 GTLLEHMFKIIDNRKHLARGFAYENNQDTIMEHLKASSFPMTGQLGVVKLDIEDLYHLKV 299

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           G VI     + +   L    +  ++ ++G   KN  IRI DRI          L 
Sbjct: 300 GDVIDLNKAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRIIQKDDKAMEALS 354


>gi|167770206|ref|ZP_02442259.1| hypothetical protein ANACOL_01549 [Anaerotruncus colihominis DSM
           17241]
 gi|167667528|gb|EDS11658.1| hypothetical protein ANACOL_01549 [Anaerotruncus colihominis DSM
           17241]
          Length = 329

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 90/273 (32%), Gaps = 14/273 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K   K    L   + + L       + +  D+        ++    ++  +  +     +
Sbjct: 43  KEQLKAMDGLHETFSRLLSSYLSGILRIGCDVQVLQIDEERYYEYNNALPDTALIGIVGM 102

Query: 89  SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
                        I  S  +   L++ LLG S +       R  + +E  +      +I 
Sbjct: 103 DPEGEDYSEGTMIIDVSTTMGFYLVDRLLGGSGDDFNFT--RDYTEIEMAIIHTIFKEIV 160

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
             L      + E    L+        +        + V  + +N+    + ++  + +P 
Sbjct: 161 GKLEDSWKNSIEVKMTLDSIET--NSRLLQIFAPEDTVIIVVINIKAGKLNATMSICMPA 218

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTY-----QLNVNIDTRINLKKTTLKDVVT 258
           + + +         +KS  +++   +   ++         ++ I    +  K  LKD++ 
Sbjct: 219 DNMEEIIDKFSMKYSKSNRRTDPEKEQMRKEVLLRGVCDTDLPIKATFDQFKMDLKDILQ 278

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           L+   +IP   +      ++ +G   ++ +LG 
Sbjct: 279 LQPSDIIPLNKKITDDIQVTLDGLPWFTAKLGE 311


>gi|77918773|ref|YP_356588.1| flagellar biosynthesis protein, component of motor switch
           [Pelobacter carbinolicus DSM 2380]
 gi|77544856|gb|ABA88418.1| flagellar biosynthesis protein, component of motor switch
           [Pelobacter carbinolicus DSM 2380]
          Length = 331

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 97/271 (35%), Gaps = 3/271 (1%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +     + L      +M   + +  +  Q  ++   +             L         
Sbjct: 61  VLDTLARHLGISLTNRMQRSIGVRRSIMQVYEYDTFLQQLAGRDALGVIRLDPLRWRGVF 120

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
                L   LLE+LLG + +    L  RSL+ +E  + + TIA     LN+  +  ++  
Sbjct: 121 IFKEKLAFYLLEHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTFAPLEKIE 180

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
            +L         +       +  V   +  +T  N+    VL++P   L           
Sbjct: 181 SSLVKIESST--RLINIVPGDASVLAAHFVVTGNNLEDEIVLVLPMAMLDPLKEKMREGS 238

Query: 218 N-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
              SE+Q         ++  Q++V++  ++     T++D++  K+G ++       +   
Sbjct: 239 AVFSESQDRPWQTQLEQEIEQMDVDLSAQMATLNLTVRDILNFKVGDILDLGCAPSSPLQ 298

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           + A G+  +    G       +RI+ RIN +
Sbjct: 299 VRAAGQPKFQAIAGTHQGKKAVRISGRINRN 329


>gi|294853149|ref|ZP_06793821.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026]
 gi|294818804|gb|EFG35804.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026]
          Length = 348

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D    S 
Sbjct: 40  EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 96

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   +R
Sbjct: 97  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 156

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T+    P       ID    +        + T  
Sbjct: 157 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 215

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 216 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 275

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +
Sbjct: 276 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 335

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 336 NQEEDLIDELV 346


>gi|266621918|ref|ZP_06114853.1| putative flagellar motor switch protein FliM [Clostridium hathewayi
           DSM 13479]
 gi|288866391|gb|EFC98689.1| putative flagellar motor switch protein FliM [Clostridium hathewayi
           DSM 13479]
          Length = 295

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 91/285 (31%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K       +L   + + L       M    +IS T     ++    +S  +  +F   +L
Sbjct: 15  KERMSTVENLYDSFARALAPYLTGLMQSYCEISVTGIVERRYQEFSNSVPDRSLFGMITL 74

Query: 89  SSW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
                    +   +     L   ++E LLG +        +R  + +EK + +  + +I+
Sbjct: 75  IPDNKDYNEAPLVLEVDTRLAFFMIERLLGGAGTEYE--LSRDFTDIEKAILQYLLGKIT 132

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
             +        +    L                  + V  + + + I+ +++   L++P 
Sbjct: 133 EFIGDSWKEYLDVDAALTGLQT--NPHLLQVSAPEDVVIQVELEVRIDQLSAVLNLVMPA 190

Query: 204 ETLLKTTLISLSSQNKSENQSEDL----IDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
             + + T     +   S+ + E           +   +  V +    +      +D++ L
Sbjct: 191 PNVEELTSKFGYTYAVSQKKDEAKQLAKRGYIEQHLLESEVELRAIFHEFSLDAQDILQL 250

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           + G V+P   +  +   +       +   LG       + I   +
Sbjct: 251 QPGDVVPLNKKVDSSIDIYVEDIACFEARLGHTKLRKAVEINKVL 295


>gi|182412236|ref|YP_001817302.1| flagellar motor switch protein FliM [Opitutus terrae PB90-1]
 gi|177839450|gb|ACB73702.1| flagellar motor switch protein FliM [Opitutus terrae PB90-1]
          Length = 351

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 90/294 (30%), Gaps = 5/294 (1%)

Query: 11  SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
           +P+  +        +   +   +    L   + ++L       + +++ +      +  +
Sbjct: 45  TPVLKVEPYDFRNPVFLSEVELRRLRLLHEDFIRYLAARLSLYLRMELGLKMAKLTTATY 104

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
           +    S           +        +  +  L +T+ + LLG           R L+ +
Sbjct: 105 AKFTDSLPSPTHLCLFKVEPLIGVGILDINPRLALTIADRLLGGRG--HSVKAERYLTEI 162

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           E  L +  +  +         T QE  P +      +  +       +  V  + +    
Sbjct: 163 EIALLEDVVNIVLEEWCTQWKTEQELRPQI--IGHENNGRFLQTSPKDAIVLILTLEANF 220

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID-PFARKTYQLNVNIDTRINLK 249
            + +    + +P  T+        + + K    S       +      + V +    +  
Sbjct: 221 GDCSEQIQIGVPYYTIEPVVKKMQARRQKDTAVSTTAKKAEWQAAYEHIKVPVRAEWSAM 280

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +L++VV+L++G V            +  N    +   +G       +++T +
Sbjct: 281 DISLREVVSLRVGDVFELPASIFHETRVLLNNVPKFVGTVGLDSDRVAVQLTRK 334


>gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
           20603]
 gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
           20603]
          Length = 308

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 94/282 (33%), Gaps = 6/282 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +   +I       + +        ++ +   I     +   +   I +   +      +
Sbjct: 29  AREHARIVEMACETFARQWATQLTSRLRVMASIELDKLEMVTYDEYIATLDPHTTLVLFT 88

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                S   +   +N  +  L+ LLG       +   R L+ +E  L +  +    A + 
Sbjct: 89  ADETRSTALLQIPSNTTMLWLDYLLGGPGLERQE-NPRELTEIETALFRSLLDSSLADMR 147

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
              S+    +P +         +      ++E V   N ++T+ +  S+  ++   + LL
Sbjct: 148 YAFSSITPMNPKIRGLQY--NPQFVQAVPASEAVLVANYSLTVGDRVSAATMMFAADALL 205

Query: 208 KTTLISLSSQNKSENQSEDLI---DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
               +     + S  Q E+     +        + V++  R N      +D++ + +G V
Sbjct: 206 NPLKVGEGEADPSAAQREEQRVSFERLRLSMNDVPVDVGVRFNSITVRPRDIIDMAVGDV 265

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           I   H       +   G+ I     G  GK   +++TD    
Sbjct: 266 IELRHAASKPLRIVVEGRTIGHGVPGNNGKQLAVKVTDTHRE 307


>gi|51246520|ref|YP_066404.1| flagellar motor switch protein (FliM) [Desulfotalea psychrophila
           LSv54]
 gi|50877557|emb|CAG37397.1| related to flagellar motor switch protein (FliM) [Desulfotalea
           psychrophila LSv54]
          Length = 323

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 2/278 (0%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           D K        +   + +    +   ++   + I     +S  F  +             
Sbjct: 48  DDKVKIPNFDIIMDSFARHYSILLSNQLQRTISIERIKLESFDFQDVFDKIAHPGAIGML 107

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
            L        I  + +L  +L+E LLGAS +      NR  +T+E  + K  I      L
Sbjct: 108 DLPPLQQGGLILFNPSLSFSLVERLLGASLDLETVCLNRDPTTIELNVLKVIIDHACLGL 167

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
           ++  S     + +L         +  +    ++ V      + +   +   +L+IP   L
Sbjct: 168 DKAFSPLVNMNSSLVKIDSK--PRLMSITDPDDEVIACTFRVILGKDSGEILLLIPLAAL 225

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                        S  ++       A +  ++  +I  +    + ++ D++ L++G ++ 
Sbjct: 226 EVLHEDLQHLLRASAKRTTTWQGTIAAEVKKMTADITAQPGRLELSVGDILGLQVGDILE 285

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
             +       +       +    G       I +T+RI
Sbjct: 286 VDYDPSKPLKVLVENSPKFYGIPGTHNGKKAISLTERI 323


>gi|84514809|ref|ZP_01002172.1| Flagellar switch protein FliM [Loktanella vestfoldensis SKA53]
 gi|84510968|gb|EAQ07422.1| Flagellar switch protein FliM [Loktanella vestfoldensis SKA53]
          Length = 320

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 31/296 (10%), Positives = 98/296 (33%), Gaps = 9/296 (3%)

Query: 14  HPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
               +        D   +        +   + +    +F+  + +   I+    +   F 
Sbjct: 30  DSKGIRDFVFGSDDLSLLGDYYALRVINERFARLARTVFQPMLRVQPRITALMPEVKTFD 89

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
               +       + + +     +  +      +  L     G       Q      +  E
Sbjct: 90  QYCENAPVLMSLTTSRIDELRGSKMMVIQPGFISALTNAYYGGDLGLRYQP-RAEFTATE 148

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
            ++ +     ++  L        + + + E     + L+  +    +E V   + ++ + 
Sbjct: 149 TRVIEIITEGLNRTLLAAWQDLMQLTFSDE--SREENLQFASFVEGSETVIICSFSVQLP 206

Query: 192 NV-ASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
               +   ++ P +TL        S  Q++  +      +   R   ++ + I+ +++  
Sbjct: 207 KADDARIDILYPLQTLKPIAAQLRSRMQSEVIDDDMTWRERLERAVSEVRLPINVQLSKP 266

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           + +L+ ++++  G V P   R      +   G++++  ++G V     I IT +++
Sbjct: 267 RVSLRQLISITKGDVYPIQLR--EGLSVMVQGQKMFFADIGEVAGTSAITITQKLD 320


>gi|23499888|ref|NP_699328.1| flagellar motor switch protein FliM [Brucella suis 1330]
 gi|161620211|ref|YP_001594097.1| surface presentation of antigens (SPOA) protein [Brucella canis
           ATCC 23365]
 gi|163844320|ref|YP_001621975.1| hypothetical protein BSUIS_B0131 [Brucella suis ATCC 23445]
 gi|254702553|ref|ZP_05164381.1| hypothetical protein Bsuib36_01102 [Brucella suis bv. 3 str. 686]
 gi|254711391|ref|ZP_05173202.1| hypothetical protein BpinB_14272 [Brucella pinnipedialis B2/94]
 gi|254711990|ref|ZP_05173801.1| hypothetical protein BcetM6_01072 [Brucella ceti M644/93/1]
 gi|254715060|ref|ZP_05176871.1| hypothetical protein BcetM_01082 [Brucella ceti M13/05/1]
 gi|256014915|ref|YP_003104924.1| flagellar motor switch protein FliM [Brucella microti CCM 4915]
 gi|256029979|ref|ZP_05443593.1| hypothetical protein BpinM2_04895 [Brucella pinnipedialis
           M292/94/1]
 gi|260568539|ref|ZP_05839008.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40]
 gi|261216767|ref|ZP_05931048.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261318997|ref|ZP_05958194.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261319634|ref|ZP_05958831.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261753131|ref|ZP_05996840.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|265987000|ref|ZP_06099557.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|23463463|gb|AAN33333.1| flagellar motor switch protein FliM, putative [Brucella suis 1330]
 gi|161337022|gb|ABX63326.1| surface presentation of antigens (SPOA) protein [Brucella canis
           ATCC 23365]
 gi|163675043|gb|ABY39153.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|255997575|gb|ACU49262.1| flagellar motor switch protein FliM [Brucella microti CCM 4915]
 gi|260155204|gb|EEW90285.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40]
 gi|260921856|gb|EEX88424.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292324|gb|EEX95820.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261298220|gb|EEY01717.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261742884|gb|EEY30810.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|264659197|gb|EEZ29458.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 316

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D    S 
Sbjct: 8   EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   +R
Sbjct: 65  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T+    P       ID    +        + T  
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 304 NQEEDLIDELV 314


>gi|119714993|ref|YP_921958.1| flagellar motor switch protein FliM [Nocardioides sp. JS614]
 gi|119535654|gb|ABL80271.1| flagellar motor switch protein FliM [Nocardioides sp. JS614]
          Length = 335

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 87/273 (31%), Gaps = 7/273 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +   ++       + +    +F   +     +S  S +   ++  I S   +   +  S
Sbjct: 56  SREHSRMLQLAFDDFCRQATTVFTSSLRTVCGVSLASIEQRTYAEYIDSLDASTYLTSFS 115

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                           V+T ++++LG       +   R L+ +E  +A   I ++   L 
Sbjct: 116 AEPLFDRGVFEIPLLAVMTCVDHMLGGPGRL--EQPERPLTEIEAGVASGMIERLLGELR 173

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
             +++     P ++        +      +++ +   ++ + I +      + +P  +LL
Sbjct: 174 YSMASIVAFEPVVKGVEY--SPQFVQVAGASDVMVAASLELRINDRTFRMTMCMPFSSLL 231

Query: 208 KTTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
              L + +      +   Q        A +  ++ V +   +     +  ++  L+ G  
Sbjct: 232 PHLLRAAAPAPVSERERAQRAQAAAELADQFQRVPVEVAVSLRPTTLSPMELAALRPGDA 291

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           +   H       +  +G        G  G    
Sbjct: 292 LRLRHPAAAPLEVVVDGTCFAHATPGTSGFRLA 324


>gi|256158143|ref|ZP_05456059.1| hypothetical protein BcetM4_04820 [Brucella ceti M490/95/1]
 gi|256252906|ref|ZP_05458442.1| hypothetical protein BcetB_01037 [Brucella ceti B1/94]
 gi|261219994|ref|ZP_05934275.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|265996661|ref|ZP_06109218.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|260918578|gb|EEX85231.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|262550958|gb|EEZ07119.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 316

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D    S 
Sbjct: 8   EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   +R
Sbjct: 65  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T+    P       ID    +        + T  
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVQLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 304 NQEEDLIDELV 314


>gi|254706317|ref|ZP_05168145.1| hypothetical protein BpinM_04820 [Brucella pinnipedialis
           M163/99/10]
 gi|261313764|ref|ZP_05952961.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261302790|gb|EEY06287.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
          Length = 316

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D    S 
Sbjct: 8   EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDTSSHFCAR-LKQGSAAAFDAETGSV 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   +R
Sbjct: 65  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T+    P       ID    +        + T  
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 304 NQEEDLIDELV 314


>gi|256059632|ref|ZP_05449829.1| hypothetical protein Bneo5_04675 [Brucella neotomae 5K33]
 gi|261323602|ref|ZP_05962799.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261299582|gb|EEY03079.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 316

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 112/311 (36%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D    S 
Sbjct: 8   EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   +R
Sbjct: 65  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T+    P       ID    +        + T  
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           +   +  + ++ 
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQGVSRARIELEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 304 NQEEDLIDELV 314


>gi|320354329|ref|YP_004195668.1| surface presentation of antigens (SPOA) protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122831|gb|ADW18377.1| surface presentation of antigens (SPOA) protein [Desulfobulbus
           propionicus DSM 2032]
          Length = 345

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 90/287 (31%), Gaps = 5/287 (1%)

Query: 22  TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81
           T   G+ +        +   + +         +  +  +      +  F   +   K   
Sbjct: 55  TRGSGEMRVPN--LDIVLDSFARKFSTSLTNTLMRNFIVEREDITTTNFQQSLLDLKSQG 112

Query: 82  VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
                 +S             +  TLLE +LG+S  +     +R+L+T+E  + K  +  
Sbjct: 113 AVGIYGISPLKHGCLFHFDTLMAFTLLEIMLGSSRSSESLPLDRNLTTIEMFVLKTIMQD 172

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLI 200
           I   L   +    E    L      +  +          V     N+ + N +     LI
Sbjct: 173 ICNELQTAMRPVVELQAQLTKVE--NNFRLVNIVEPEVEVLVTRFNIQLGNELCGQMRLI 230

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           IP  TL        +    ++  +    +  AR+T ++   +  R  L   T++ ++ L+
Sbjct: 231 IPYLTLEPLREKFKALVTITQAAANTWTEIIARETLEMESQVIARSGLITMTIRRILGLQ 290

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            G +I   +       +    + ++    G         +T R    
Sbjct: 291 PGDIIDLQYDPDRPLTVLVEDQPLFLAIPGERNGKKAFHVTGRYTTQ 337


>gi|163783035|ref|ZP_02178030.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881715|gb|EDP75224.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1]
          Length = 322

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 95/296 (32%), Gaps = 14/296 (4%)

Query: 11  SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
            P     L R+        T       +   +        +  +    +IS +  ++ K 
Sbjct: 33  KPFDINELERI------SPTRLIKLEQVINRWIASATAELRGIIFNLDNISLSEIKTEKI 86

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
           S  +         +  ++ + +   ++     L+ T++  + G       ++  +S +  
Sbjct: 87  SDFVLKIPLPAAIAVLNVEALNGRLYMVLDTRLIYTIISIIFGG-PAQPYKVEGKSFTKF 145

Query: 131 EKKLAKRTIAQISAVLNQCI-STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           E+K+    +  +   LN       +E           D  ++      NE V  I + + 
Sbjct: 146 EQKIINNLVEVLVRHLNTAWVELIREGEVQFVGIE--DNPRRLITISRNEIVIVITLEVE 203

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           IE       L IP +T+     I  ++  +S +      D          V ++  +   
Sbjct: 204 IEGFKGYVYLAIPMKTIDPIKDILRTADTESGD----FRDVILSNLMGTPVLLEAILPTL 259

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
              + +++ +K G  IP   R      +   G  ++   LG       ++I   + 
Sbjct: 260 VMNVHELLEMKEGDFIPLDPRATDSITVKVAGVPMFKGILGESAGRKAVKIKSFVE 315


>gi|306846301|ref|ZP_07478862.1| surface presentation of antigens protein [Brucella sp. BO1]
 gi|306273296|gb|EFM55165.1| surface presentation of antigens protein [Brucella sp. BO1]
          Length = 316

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  G    ++ ++         F  +  K+      D    S 
Sbjct: 8   EHNRKNDALAENLLRAAGLSGGD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   +R
Sbjct: 65  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T     P       ID    + + L    + T  
Sbjct: 125 PFGMVEQKIANLLAGHLADALDRVFNTGSS-QPLFAPGDCIDTADFDRDNLELSRLFTCR 183

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 304 NQEEDFIDELV 314


>gi|332669206|ref|YP_004452214.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484]
 gi|332338244|gb|AEE44827.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484]
          Length = 309

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 27/285 (9%), Positives = 77/285 (27%), Gaps = 6/285 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                L   +   +          +        ++ +   +++   +   +         
Sbjct: 21  DFRRPLTLAREHSRHLEMAFQRVARQFATQLTARLRVVSQVTFEDLELRTYDEYTGGLPT 80

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
                  ++        +       +  ++ L G       +   R L+ +E  L +  +
Sbjct: 81  PTAMVMCAMEPSRQTAVLQIPVGATLVWIDYLFGGDGRG-DEREGRELTDLEWTLVRDLL 139

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
                 L    +     S  +         +      + E V      + +         
Sbjct: 140 QHAIGDLEYSFAGVTPMSATVRSVQY--NPQFAQVVAAQETVLVAVFLLRVGEREDRMTF 197

Query: 200 IIPQETLL---KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           ++P + LL   +++  + +   +    +        R    + V++  +        +DV
Sbjct: 198 MLPSDLLLGALRSSEGADARSEEERQVARIAHAELERAVQDVPVHVAVQFRPVTVHPRDV 257

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           V L +G V+P  H       +  +G  +     G  G     ++ 
Sbjct: 258 VNLTVGDVLPLSHPSSEPLDVVVDGIVLARAAAGSHGSRLACQVV 302


>gi|306837356|ref|ZP_07470235.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF
           2653]
 gi|306407548|gb|EFM63748.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF
           2653]
          Length = 348

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 110/311 (35%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D      
Sbjct: 40  EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPV 96

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   +R
Sbjct: 97  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDR 156

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T     P       ID    +        + T  
Sbjct: 157 PFGMVEQKIANLLAGHLADALDRVFNTGSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 215

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 216 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 275

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+             A  ++++ C LG+ G ++T+++ D +
Sbjct: 276 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPV 335

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 336 NQEEDFIDELV 346


>gi|254699436|ref|ZP_05161264.1| hypothetical protein Bsuib55_01034 [Brucella suis bv. 5 str. 513]
 gi|261749887|ref|ZP_05993596.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261739640|gb|EEY27566.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
          Length = 316

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 112/311 (36%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D    S 
Sbjct: 8   EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   +R
Sbjct: 65  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T+    P       ID    +        + T  
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +      L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMLLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 304 NQEEDLIDELV 314


>gi|225569967|ref|ZP_03778992.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM
           15053]
 gi|225161437|gb|EEG74056.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM
           15053]
          Length = 336

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 104/286 (36%), Gaps = 9/286 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K   K+   +   Y +         +    ++   S +  ++    +   EN V    +L
Sbjct: 48  KDKLKLLKGIYDNYGRLASSRLNGVLRTACEMEVLSVEEQRYFEFSNILSENDVMMMLNL 107

Query: 89  S-SWSS---NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                S      I  S  L++ +++ +LG + +      + + S +E  L K+ +  +  
Sbjct: 108 KLPDESKNPPMMIHISQKLMVNMIDRMLGGTGDDDDVDSSYTYSEIESALYKKVMKYLLD 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
           +         + +  L D    +          +E V  + +N+ ++N+     + IP  
Sbjct: 168 ITRDAWGNYIKIN--LGDQRLEENPGLFQEISLDEPVAIVLLNVKMQNIDGRITICIPGN 225

Query: 205 TLLKTTLISLSSQNKSENQSE---DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
            L+    I    ++      E   +  +    +  +  + I   +   + ++K+V  LK+
Sbjct: 226 LLMNIFNIIDKRKHVDGLYDEGIANSRELIMTRLNRSTMEIKAELAEAQLSMKEVCGLKV 285

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           G VI      ++  +L    +  +  +LG   KN  ++I   I  +
Sbjct: 286 GDVIDLNKSRESDVVLYVEEQPWFRGKLGAHNKNAAVKIKQCIQEE 331


>gi|17989455|ref|NP_542088.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str.
           16M]
 gi|256043048|ref|ZP_05445993.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111966|ref|ZP_05452917.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 3 str.
           Ether]
 gi|260564280|ref|ZP_05834765.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str.
           16M]
 gi|265989486|ref|ZP_06102043.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993415|ref|ZP_06105972.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17985334|gb|AAL54352.1| flagellar motor switch protein flim [Brucella melitensis bv. 1 str.
           16M]
 gi|260151923|gb|EEW87016.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str.
           16M]
 gi|262764285|gb|EEZ10317.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000155|gb|EEZ12845.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 316

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 112/311 (36%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D    S 
Sbjct: 8   EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   + 
Sbjct: 65  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADH 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T+    P       ID    +        + T  
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 304 NQEEDLIDELV 314


>gi|325527237|gb|EGD04619.1| flagellar motor switch protein FliM [Burkholderia sp. TJI49]
          Length = 220

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 51/196 (26%), Gaps = 8/196 (4%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
               P +     R+                +   + + L       M    +IS +  + 
Sbjct: 33  SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            K+S    +       +   +             NLV  +++NL G       ++  R  
Sbjct: 87  LKYSEFTRTLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  R +  +         + +               +       NE V     +
Sbjct: 147 TATEQRIIGRLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204

Query: 188 MTIENVASSFVLIIPQ 203
           +          + +P 
Sbjct: 205 IEFGPTGGKLHICMPY 220


>gi|148554378|ref|YP_001261960.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1]
 gi|148499568|gb|ABQ67822.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1]
          Length = 331

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 29/288 (10%), Positives = 84/288 (29%), Gaps = 10/288 (3%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
                      +     + L  + +        +     ++ +F     +  ++   S  
Sbjct: 52  RPVAHLAHLERMNERIARRLRDVIEPIAQTRSKVDPIPLETRRFDEWQRNQADHMSLSLF 111

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
            +        +    + V  +++   G +   +        +  E++L +R    I  VL
Sbjct: 112 RVRPVKGMMMVAVEPSFVTNMVDAFYGGTGNGLTTKGG-EFTPSEQRLQRRLTDAIVEVL 170

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQET 205
            +  S T     +                 ++E V   +  +    + ++   ++ P   
Sbjct: 171 TRVWSDTFPLQFDFSTHET--NAAFANMVRADEPVVVQSFTIKPGMSRSTRVEILYPLSL 228

Query: 206 LLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           L        + +Q  ++    +           + + + + +   + ++  ++ LK G V
Sbjct: 229 LQPIEDQIAARTQAGADGDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDV 288

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           IP          L    +      +G       + I      +++ LK
Sbjct: 289 IPVNL--SQTVPLLVGNRRFAEGTIGEQDGRAALMIESL---NKEVLK 331


>gi|114777574|ref|ZP_01452555.1| flagellar motor switch protein FliM [Mariprofundus ferrooxydans
           PV-1]
 gi|114552045|gb|EAU54562.1| flagellar motor switch protein FliM [Mariprofundus ferrooxydans
           PV-1]
          Length = 330

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 95/295 (32%), Gaps = 8/295 (2%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
             + + R      D      +  +L     +   + + E    DV +  +S +S  +  I
Sbjct: 38  EHVEVYRFNVNDEDSPERYPMFVNLQERLIEMFDEQWHELFKRDVSVQVSSLESLFYKDI 97

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           + S     V+       +     +     L++  ++ +LG   +       ++LS VE +
Sbjct: 98  V-SVDAPQVYFVFEADGY-GRMLVSFDTALIVAFVDAMLGGDGDADDNP--QTLSAVELR 153

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN- 192
           L++R   +IS  L            +L         +      + E   +   ++ + + 
Sbjct: 154 LSERIADKISKTLGDLWQPVYPLDFSLHKLDY--DPQFLAVTGAMEKCFSTFFDIKLNDE 211

Query: 193 VASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
           +     +  P+  L     +   +  ++S +   +  +   ++  Q    +   +   + 
Sbjct: 212 LNGQMGIYYPRSFLEPMLDVLRVTVTDESGDTDMEWTNGLMQRLSQTPAALRFELGRCQI 271

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            +   + +  G  +P   R      L  +   ++    G         IT+ +  
Sbjct: 272 DIGAFLKMMPGDFLPISTRANDPCSLWIDEIPLFQATPGEKNGGLAAEITEPVQP 326


>gi|225685986|ref|YP_002733958.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC
           23457]
 gi|256262888|ref|ZP_05465420.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str.
           63/9]
 gi|225642091|gb|ACO02004.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC
           23457]
 gi|263092725|gb|EEZ16934.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str.
           63/9]
 gi|326410312|gb|ADZ67376.1| Flagellar motor switch protein fliM [Brucella melitensis M28]
 gi|326553605|gb|ADZ88244.1| Flagellar motor switch protein fliM [Brucella melitensis M5-90]
          Length = 316

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 111/311 (35%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D    S 
Sbjct: 8   EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S         F +  + +      W  + ++     LV +++E + GA     P   + 
Sbjct: 65  ESTDKMAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADH 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T+    P       ID    +        + T  
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 304 NQEEDLIDELV 314


>gi|254720632|ref|ZP_05182443.1| hypothetical protein Bru83_14198 [Brucella sp. 83/13]
 gi|265985676|ref|ZP_06098411.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|264664268|gb|EEZ34529.1| conserved hypothetical protein [Brucella sp. 83/13]
          Length = 316

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 110/311 (35%), Gaps = 5/311 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D      
Sbjct: 8   EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPV 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   +R
Sbjct: 65  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDR 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T     P       ID    +        + T  
Sbjct: 125 PFGMVEQKIANLLAGHLADALDRVFNTGSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+             A  ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPV 303

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 304 NQEEDFIDELV 314


>gi|254461418|ref|ZP_05074834.1| flagellar motor switch protein FliM [Rhodobacterales bacterium
           HTCC2083]
 gi|206678007|gb|EDZ42494.1| flagellar motor switch protein FliM [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 324

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 88/272 (32%), Gaps = 7/272 (2%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
               +   + +    +F+  + +   IS        F             S + +     
Sbjct: 54  ALRVINERFARLARSVFQPMLRVQPRISAQLPTVQTFDEYSKDSPSLMSLSTSRIDELRG 113

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
           +  +      +  L     G     +        +  E ++ +     ++ VL       
Sbjct: 114 SKMMVMQPEFISALTNGYYGGEL-GLKHALRSEFTATETRVIEIITNGLNDVLLTAWQDL 172

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLI 212
              S +       + L+  +     + +      + +    S +  ++ P +TL      
Sbjct: 173 MPLSFSEH--AREENLQFASFVDGGDTIIVCKFTVQLPKAESATLDILYPLQTLKPIAAQ 230

Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             S  Q+          +   +   Q+++ ++ +++  K +L+++V L+ G V P   + 
Sbjct: 231 LRSRMQSDVIEDDLTWRERLEQAVMQVSLPMNVQLSKPKVSLRELVELEAGDVFPIQLKT 290

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                +  +G+E++  ++G V     I I  +
Sbjct: 291 G--LGVMVHGQEMFVADIGEVAGTSAITIIRK 320


>gi|269796385|ref|YP_003315840.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542]
 gi|269098570|gb|ACZ23006.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542]
          Length = 315

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 7/302 (2%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
             P  P         +   +   +        + +        ++ + V +     +   
Sbjct: 18  QRPAQPEAYD-FRRPMTLAREHGRAFEMAFETFARQWGTQLTSRLRVMVGVGLDGVEMVS 76

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           +   +     +      S+ +  S   +  ++   +  ++ +LG       +L  R L+ 
Sbjct: 77  YDEYVRRLPNHTTMVLCSIETTRSTAVLQVASETSMLWVDYVLGGPGLVREELP-RELTE 135

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +E  L    ++   A L             ++        +      ++E V      +T
Sbjct: 136 IETTLITDMLSGALADLRYAFVAVVPLDVRVKAIQY--NPQFVQAAPASEAVIVATFTLT 193

Query: 190 IENVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           +    ++  L+IP + LL         +        ++    D   R    + V++  R+
Sbjct: 194 VAERPTTATLMIPADVLLAPMRAGEGVVQRSKDELAEAAAASDRLHRTMSTVPVDVHVRM 253

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                  +DVV L +G+VI   H       +  +G  +     G  G+    +I D    
Sbjct: 254 RPVTVHPRDVVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHGVAGNNGRQLACKIVDSEGE 313

Query: 307 DQ 308
           D+
Sbjct: 314 DR 315


>gi|119469993|ref|ZP_01612798.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
 gi|119446703|gb|EAW27976.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
          Length = 230

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 69/192 (35%), Gaps = 5/192 (2%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+ +L     +  E+++ +  +  I     +  +   +   + E                
Sbjct: 4   TMQKLKAGEFTPTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSP 61

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTY 236
            E V   + ++ ++     F + +P   L     +  +  Q+ +E+           +  
Sbjct: 62  TEVVVISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIM 121

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + V++ T++     TL+ ++ LK G +IP          +       +  ++GR   N 
Sbjct: 122 DVEVDMSTQLLEVDLTLQQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDNV 179

Query: 297 TIRITDRINFDQ 308
            ++I+++I    
Sbjct: 180 ALQISEKIKRPD 191


>gi|153011533|ref|YP_001372747.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151563421|gb|ABS16918.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           anthropi ATCC 49188]
          Length = 317

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 107/306 (34%), Gaps = 6/306 (1%)

Query: 11  SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
           S +    L R  G  GD   ++ ++         F  +  K       D+     +S   
Sbjct: 15  SDVLAENLLRAAGLSGDD--LKSLAHVFKDASTHFCDR-LKHGCAAAFDVEAGQVESTDD 71

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
           +       +  + +      W S  ++     LV +++E + GA         +R    +
Sbjct: 72  AAFADILDKAAIIAPLKAERWGSTLYLTADATLVFSVIEAMYGAQGHVGSVDEDRPFGML 131

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           E+K++      +++ L+Q  +               D  + +        +    +++T 
Sbjct: 132 EQKISALLAGHLASSLDQVFAANG--QALFTAGECTDTAEFDRENFERSRLFACRIDVTA 189

Query: 191 ENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
                   L++P+ T         +  +               ++  +  + ++  I   
Sbjct: 190 AGKTGQVHLLLPRSTHKPMQDAVAAFLRRPMNQTDPSWAKKMRQEVSRARIELEAFIQQG 249

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             TL  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++ 
Sbjct: 250 SMTLDALSMLEIGQVLKLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEED 309

Query: 310 SLKNFL 315
            +   +
Sbjct: 310 FIDELV 315


>gi|226225727|ref|YP_002759833.1| flagellar motor switch protein FliM [Gemmatimonas aurantiaca T-27]
 gi|226088918|dbj|BAH37363.1| flagellar motor switch protein FliM [Gemmatimonas aurantiaca T-27]
          Length = 331

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 97/301 (32%), Gaps = 8/301 (2%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
            S    + +          K   +   ++     K        ++   +++   S +   
Sbjct: 25  ASAGLDVQVYDFRRPHRVSKERLRTLEAMYERLVKGFEAWLISRVRGQIEVRLQSVEQFS 84

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           F     S           ++       I         +++ L G           R+L+ 
Sbjct: 85  FGEFTLSLPMPCSSYIFDIAGTGQKGVIDVGPEFSTYIVDRLFGGEGT--GSALTRALTP 142

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +E+   +    +I+ +L +          N+  F      +        + V   N+ + 
Sbjct: 143 IERMAVRNVADKITGLLQEIWQDHVAMDLNITGFE--SSPEILQVVNREDPVLVANVEVN 200

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTR 245
             +V+S  +L +P   L K    +   +    N +E   +   ++         V +  R
Sbjct: 201 TGSVSSLLLLCLPFSVLDKFFTSNGQQRLALLNTNEQEREATRQRSEAALRATKVPLTAR 260

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +++D+  +  G VIP    +    ++ A  +E +    GRV  N  +RI D + 
Sbjct: 261 LPDFQLSMRDLAQITEGSVIPTAIPKDARVLIRAGTQERFIGHAGRVNGNLAVRIVDALP 320

Query: 306 F 306
            
Sbjct: 321 S 321


>gi|83944184|ref|ZP_00956640.1| possible flagellar motor switch protein FliM [Sulfitobacter sp.
           EE-36]
 gi|83845051|gb|EAP82932.1| possible flagellar motor switch protein FliM [Sulfitobacter sp.
           EE-36]
          Length = 318

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 102/299 (34%), Gaps = 4/299 (1%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           L+  +            +   +G    + L     + M    + S  S        +I  
Sbjct: 18  LIDEIIRMSDFTFDRLPMLDIIGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEG 77

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +    +  +   +     +     +++T +E +LG + + +        + +E    +
Sbjct: 78  LPKPTFLAVGTGHPFVGEILVVMDQAVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGE 137

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
           R  + + A L + +S    ++  L+        +      +      + +++T+     +
Sbjct: 138 RLASAVFAELERSLSVVGAANLELDRIETE--AEGAAIAKNTSLCARLRLSLTLAGNTGN 195

Query: 197 FVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L+IP + L +                 +        +  + NV++D  ++     L+ 
Sbjct: 196 LDLVIPYDALEQILPDLGKVYFGDRMVSQDQWRGLIGAQIERANVDLDVVLSENVFPLQK 255

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKNYTIRITDRINFDQKSLKN 313
           +++ + G  I F   E   A ++     +++  LG+       ++IT+++   +    +
Sbjct: 256 IMSWRPGDTIDFGIEEGRDATVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314


>gi|83955115|ref|ZP_00963771.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
 gi|83840444|gb|EAP79617.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
          Length = 318

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 102/299 (34%), Gaps = 4/299 (1%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           L+  +            +   +G    + L     + M    + S  S        +I  
Sbjct: 18  LIDEIIRMSDFTFDRLPMLDIIGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEG 77

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +    +  +   +     +     +++T +E +LG + + +        + +E    +
Sbjct: 78  LPKPTFLAVGTGHPFVGEILVVMDQTVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGE 137

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
           R  + + A L + +S    ++  L+        +      +      + +++T+     +
Sbjct: 138 RLASAVFAELERSLSVVGAANLELDRIETE--AEGAAIAKNTSLCARLRLSLTLAGNTGN 195

Query: 197 FVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L+IP + L +                 +        +  + NV++D  ++     L+ 
Sbjct: 196 LDLVIPYDALEQILPDLGKVYFGDRMVSQDQWRGLIGAQIERANVDLDVVLSENVFPLQK 255

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKNYTIRITDRINFDQKSLKN 313
           +++ + G  I F   E   A ++     +++  LG+       ++IT+++   +    +
Sbjct: 256 IMSWRPGDTIDFGIEEGRDATVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314


>gi|163784305|ref|ZP_02179215.1| Flagellar motor switch protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880423|gb|EDP74017.1| Flagellar motor switch protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 263

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 81/250 (32%), Gaps = 4/250 (1%)

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +S       +F+  +        ++  S+     N  +   + LV T++  L G   +  
Sbjct: 17  VSQNDIYITRFNDFMLKIPLPASYTIISMKPLKENSLLVLDSRLVFTIISVLFGGPPK-P 75

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  R  + +E K+    I  +                 +E                +E
Sbjct: 76  FKVEGREFTKLEIKVINDFIKAVLETFESVWEQIYPIK--IEMKSIELNPNLARIVSPSE 133

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
            V  + +++ I+   +      PQ   L       S       +     +    K +++ 
Sbjct: 134 KVIVVELSIDIDGYEAPMFFCFPQNMFLPIKDFIYSEVT-QFEEDVAWKNYLLEKVHKIK 192

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  +   +KD++  K G  +       T   +    K  +  +LG+  + + ++
Sbjct: 193 VKLWVELFKETYKVKDILEWKEGTKLETKISTDTLLKVYIEDKPKFLGKLGKKKEKFAVK 252

Query: 300 ITDRINFDQK 309
           I D    ++ 
Sbjct: 253 IKDIYLGEKN 262


>gi|1870714|gb|AAB48838.1| FliM [Sinorhizobium meliloti]
          Length = 258

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 125/252 (49%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   N       L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y  
Sbjct: 4   STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            ++G  + +I +  +  +    SL +W ++F +GC   ++I L+E LLG +  +I +   
Sbjct: 64  FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDTPVLIALVEALLGPNPTSIEEPPP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           RSLS +E  +A    ++I+ VL   ++      P +   Y+     K    L + F  +I
Sbjct: 124 RSLSKIEIDVALPVFSRIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M + +  V S+F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ 
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243

Query: 245 RINLKKTTLKDV 256
           RI L+  TL  +
Sbjct: 244 RIRLESLTLDTL 255


>gi|296447445|ref|ZP_06889370.1| surface presentation of antigens (SPOA) protein [Methylosinus
           trichosporium OB3b]
 gi|296255065|gb|EFH02167.1| surface presentation of antigens (SPOA) protein [Methylosinus
           trichosporium OB3b]
          Length = 339

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 107/301 (35%), Gaps = 3/301 (0%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +  RL    G       +             ++ ++   +   ++  S  + + +   +
Sbjct: 39  AVRERLLAGGGLSPDRLPMLRVALDEAALGFEEMLRKLGFVSPQVAVESVAATRAAEAQN 98

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           +     + +    +   +   +G     V  ++E L GA          R+L++VE +LA
Sbjct: 99  ALDALAITATYGGAEPDARVTLGAERKFVFAMVEGLFGADGSEPFYEEERALTSVEIRLA 158

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +  + +++  L    ++T  ++  L+        +       +         +T     S
Sbjct: 159 RLVLDRLAKALQISFASTAGAALALDPVEPK--PEPAGAARRSGSALICRFRLTAFGAES 216

Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
             ++  PQ  L        +      ++           +     V++   +  +  TL 
Sbjct: 217 EALVTFPQGVLDPLREALAADPATTIQSADPLWAQRMKDRITATEVSLTAVMERRDLTLG 276

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           DV   ++GQ++           L   G+ ++ CE+G+    YTIRI D ++ +Q+ + + 
Sbjct: 277 DVARFEVGQIVELPVSPTGLIALECEGQTLFWCEIGQKDGAYTIRIADFVDKEQEFIDDM 336

Query: 315 L 315
           L
Sbjct: 337 L 337


>gi|110632665|ref|YP_672873.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp.
           BNC1]
 gi|110283649|gb|ABG61708.1| surface presentation of antigens (SPOA) protein [Chelativorans sp.
           BNC1]
          Length = 311

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 102/305 (33%), Gaps = 6/305 (1%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P+  +++ RL G  GD + + + + +        L  IF+ K    + +     +  + +
Sbjct: 10  PMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIAGVEVVRLA 69

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
            +               +       +      +  L+  LLG   +  P   +R  S +E
Sbjct: 70  ELKPEPDSFDALVVIPATDSRDALTMRLDAQALSLLVSILLGGDPDIPPSPLDRPPSRIE 129

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL-KKNTNRLSNEFVTTINMNMTI 190
             +A+      +  LN   S +      L     +          + +     I  ++  
Sbjct: 130 LDVARLVFGAFAQALNGTGSRSLGL--RLPAPQPLAGPGDFKRFLVRDGPGIRIAFSLGA 187

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
             V+      +P   +LK       +              F  +  +  V +   I L K
Sbjct: 188 GPVSGILTAWLPHRIILKAR---APAAEDDSPAHTQWKQRFGEEVRRSTVQVTATIPLTK 244

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             L  +  LK GQV+           LS   + ++ CE GR+G+NYT+RI    +  Q  
Sbjct: 245 LPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRIRQPFDDRQAV 304

Query: 311 LKNFL 315
           L   L
Sbjct: 305 LDGLL 309


>gi|94968664|ref|YP_590712.1| flagellar motor switch protein FliM [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550714|gb|ABF40638.1| flagellar motor switch protein FliM [Candidatus Koribacter
           versatilis Ellin345]
          Length = 329

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 93/283 (32%), Gaps = 10/283 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +   +  SSL   + + L       + +  + +  S +   +  ++    E   +S   +
Sbjct: 48  REQVRSISSLHEGFARNLTHSLGAYLRVPFEANLVSVEQLTYRELLGRLPEVAYYSTFRI 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            +  +   +    +L   +++ LLG       Q+  R ++ +E+++ +     +   L  
Sbjct: 108 GTADNIGAMEMDLSLAFPMIDILLGGQGGHDEQV--REITEIEEQILEVVAKVVCKELET 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ET 205
                       E       L++       E +  +   + +     S  L         
Sbjct: 166 AWQP-LGMEFAFEARQQAAQLQR--LMPPTEKILALCFELEMPGCRGSLNLAFSAVVSNA 222

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           LL+        + +S     D      RK       +   +      +++++ L+ G ++
Sbjct: 223 LLRKLSKDWGYRRQSRESDGD--GKLHRKLLGCPFPVSLGLVDASVRVRELLQLRAGDIL 280

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           P     ++   LS  G+  +     R G     +I  RI+  +
Sbjct: 281 PLKRSAESAIELSVGGRASFRARPVRSGNWRAAQILGRISTAK 323


>gi|56551539|ref|YP_162378.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761177|ref|ZP_04759266.1| flagellar motor switch protein FliM [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752861|ref|YP_003225754.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|56543113|gb|AAV89267.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241374796|gb|EER64257.1| flagellar motor switch protein FliM [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552224|gb|ACV75170.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 332

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 83/285 (29%), Gaps = 8/285 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
                     +     + L  I +        ++        F        E    S   
Sbjct: 54  PIVRMAGLERIAEKLARRLRLIIEPFARARTQVTVDGVDIHHFEKWRRDLPEFVSISLYR 113

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L+       I      +  L++   G +    P    +  +  E++L  R    I+  + 
Sbjct: 114 LAPLKGGAMIVMDPQFITGLVDAFYGGTGIVTPSRA-KEFTPAEERLLVRLSDTIADSVV 172

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETL 206
           +  S   +                 T   ++E V      +      A+   ++ P+ TL
Sbjct: 173 ESWSDVVQLQSQF--LSRETNGAYVTMIRNDEAVVVQRFTIVPGNGRAARISIVYPRATL 230

Query: 207 LKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
               +   +  +       E+           + + I T +   + T+  +  LK+G+VI
Sbjct: 231 RPFEMHLDTKVHDDAGPADENWTKRMRLAASAIPIPIKTILARPQITMGQLKNLKVGEVI 290

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           P          L A  K+I    +G       + I +++  + + 
Sbjct: 291 PIEMP--EQLPLIAGTKKIAYGSIGDRDGKTALLI-EKLEEEPEI 332


>gi|152965629|ref|YP_001361413.1| flagellar motor switch protein FliM [Kineococcus radiotolerans
           SRS30216]
 gi|151360146|gb|ABS03149.1| flagellar motor switch protein FliM [Kineococcus radiotolerans
           SRS30216]
          Length = 314

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 82/284 (28%), Gaps = 6/284 (2%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    +   ++       + +    +    +   V +     Q   +     S   
Sbjct: 27  DFRRPTKLSRQHARVLEITYEGFCRQWATLLSSTLRTTVQVELDGIQQYSYDEYAASLPM 86

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             V +            +      V++ +E +LG +         R L+ +E  LA+  +
Sbjct: 87  PTVMAVFDPEPLVGAAVLHMDMAFVLSCIERMLGGTG--HNAQPERQLTDIEAVLARGMV 144

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
            +    L   + T  +  P L                + + +   + ++ ++ VA +  L
Sbjct: 145 ERTLVELASSLVTVTDLKPKLTAID--QNPAFAQAAAATDVMIVSSFHLEVDGVAGTATL 202

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDL--IDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
            +P + L      +       E         D        + V +  R+   +    +++
Sbjct: 203 AMPLDPLSTALTAAELRVASPEELRIRRLMRDRLDDHLEHIPVEVSVRMKAAQMRPDEIL 262

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            L  G V+   HR      + ++   + S   G  G      I 
Sbjct: 263 GLVPGDVLRLPHRADEPLEVVSSDAHVASAVAGSRGAKLACLIV 306


>gi|313905139|ref|ZP_07838508.1| surface presentation of antigens (SPOA) protein [Eubacterium
           cellulosolvens 6]
 gi|313470042|gb|EFR65375.1| surface presentation of antigens (SPOA) protein [Eubacterium
           cellulosolvens 6]
          Length = 368

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 96/274 (35%), Gaps = 9/274 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K   K+  S+   Y + L            DI+    +  ++   ++SF EN   +    
Sbjct: 52  KEKLKLLRSIFENYARILTSQVNGIFRTMTDITVMELRESRYYEYVNSFHENDCMTIIDT 111

Query: 89  -----SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
                  +S    I  +  L++TL+ ++LG   + I    N   S VE  L KR +  I 
Sbjct: 112 VMPEKGKFSVPMMIYVTPGLILTLMSHMLGGGEQVISTEENYRYSDVEMSLYKRILEYII 171

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIP 202
             L    S               +          +E V  +++N+ +  +AS    + IP
Sbjct: 172 HALGDGFSNYLTVDFR--PQKVEENPSMIQEVGLDETVVLVHLNVDVTGIASEKIRICIP 229

Query: 203 QETLLKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
              L +      + ++ +      +  +       +    +  ++   + T++D+  L++
Sbjct: 230 GTLLEQIFRTIDNRKHIARGFTYSNNSEVIMSHLKETKFPLTAQLGTVRLTMEDLYRLQV 289

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           G VI     +     L    +  +   +G   KN
Sbjct: 290 GDVIDMNKSKDATLSLFVGKQPWFKGTMGVHHKN 323


>gi|218672165|ref|ZP_03521834.1| flagellar C-ring motor switch protein [Rhizobium etli GR56]
          Length = 209

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 113/209 (54%)

Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
           +E+LLGA+ +TI +  +R LS +E  LA     +I+ VL   ++      P+L   +  D
Sbjct: 1   MEHLLGATADTIEEPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHD 60

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
              +      +EF   INM++T+  + S F LI+PQ  LLKT +     + ++   S + 
Sbjct: 61  TRPRPAEDKPDEFAAAINMSITLAGIVSEFSLIVPQTALLKTQVTPPKPKRQAGGASPEW 120

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            +    +  + +V ++ RI L+  TL+ +  L +G VIPF    +    +SAN KE+Y C
Sbjct: 121 TEQLGDQVRRSHVTLEARIRLQDLTLRTISKLMVGDVIPFRDTGEVRVEVSANSKELYIC 180

Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           E GR G+NY +R+ D +N D + +++ ++
Sbjct: 181 EFGRSGENYMVRVKDTMNSDDELIRHLMN 209


>gi|195952553|ref|YP_002120843.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1]
 gi|195932165|gb|ACG56865.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1]
          Length = 321

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 88/275 (32%), Gaps = 6/275 (2%)

Query: 35  SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94
              +   + +         +    +I        +F  +I         +  +++     
Sbjct: 50  LEIILEKWSRLSRVKLSSLIVAINNIYKAETSLIRFEDLITKLPVPSCINMFNITGLKGT 109

Query: 95  FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            F+     ++ +++  + G S +   ++  +  + +E K+ K+ +  + +   +  ++  
Sbjct: 110 HFLILDPRMIYSIVSVIFGGSAKPY-RIEGKEFTKLELKIIKKVVDLLLSAFQESWNSI- 167

Query: 155 ESSPNLEDFYDIDYLKK-NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
             S  +                   E     ++N+ I+ +     L I   +L       
Sbjct: 168 -LSGEVMYLETEVNPALIAPMNSKKEMFIQAHINIEIDGIDYPIFLAIQNSSLEPVVDRL 226

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    S+    D I+        L V++   I+     +KD++  ++G  I        
Sbjct: 227 RNVSEVSDYVDYDSIN--KNLIKNLTVSLSVAIDGGDFMVKDILEWEVGDTITLKTSANR 284

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              ++  G       LGR      ++I   ++  +
Sbjct: 285 PVKVNIEGMLKMYGVLGRSNSKKAVKILKLLDNKE 319


>gi|239834451|ref|ZP_04682779.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822514|gb|EEQ94083.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 321

 Score =  155 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 104/301 (34%), Gaps = 10/301 (3%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
           R  G  GD   ++ ++         F  +  K       DI     +S   +       +
Sbjct: 24  RAAGLSGDD--LKSLAHVFKDASTHFCDR-LKHGCAAAFDIDAGQVESTDEAAFADILDK 80

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ----LYNRSLSTVEKKLA 135
             + +      W    ++     LV +++E + GA             +R    +E+K++
Sbjct: 81  AAIIAPLKAERWGCTLYLTADATLVFSVIEAMFGAQGNIGGNVGSVDEDRPFGMLEQKIS 140

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
                 ++  L+Q  +   ++         ID  + +        +    +++T      
Sbjct: 141 ALLAGHLAKSLDQVFAGNGQT--LFAAGECIDTAEFDRENFERSRLFACRIDVTAAGKTG 198

Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              L++P+ T         +  +                +  +  + ++  I     TL 
Sbjct: 199 RVHLLLPRSTHKPMQDAVAAFLRRPMNQADPSWAKKMRHEVSRARIELEAFIQQGSMTLD 258

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
            +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   
Sbjct: 259 ALSMLEIGQVLKLPADAMEQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDEL 318

Query: 315 L 315
           +
Sbjct: 319 V 319


>gi|220913720|ref|YP_002489029.1| surface presentation of antigens (SPOA) protein [Arthrobacter
           chlorophenolicus A6]
 gi|219860598|gb|ACL40940.1| surface presentation of antigens (SPOA) protein [Arthrobacter
           chlorophenolicus A6]
          Length = 298

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 81/278 (29%), Gaps = 9/278 (3%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                    +   ++       + +        K+ +    +        +     S   
Sbjct: 19  DFRRPTTLPRQHSRVLEVAFETFARQWGTQLTAKVRVKSSATLEQLSMQSYDEYAASLPS 78

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
                   +    S   +       +  +  +LG S +    +  R  + +E  L +R +
Sbjct: 79  VTSMVLCRIDGSESRLVLQFPATAALAWISRMLGGSGD--ADVPERKFTQIEHALVRRMV 136

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
                 L   + +   +   ++        +        E +     ++ +  + S+  L
Sbjct: 137 EDSLEDLKYSLGSLLAAPLAMDVVQY--NSQFAQAAAPGELMIVATFSVQVGELPSAATL 194

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
            IP + LL                + D       +  Q+ V++  ++     T   ++ L
Sbjct: 195 AIPADVLLPGL-----GAVNPTAPTADAGALVRAQVAQVPVDVAVQLARTSVTPAQILGL 249

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
            +G V+P  H E +   ++ NG  + +    R G    
Sbjct: 250 AVGDVLPLPHPENSPFDVTVNGTRLATAAPARNGSRAA 287


>gi|300024614|ref|YP_003757225.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526435|gb|ADJ24904.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 322

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 96/307 (31%), Gaps = 13/307 (4%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R      ++        ++     + + +         V        +        + 
Sbjct: 16  LERALSAGQNRPDRLPGLQTIFGQLPRVMVEELGSVSSFPVKARLLDLSASTIGE-SCNL 74

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
             N          W +  +      L    +E+ LG        L  R L+  +  + + 
Sbjct: 75  PPNTYAGVVRAERWRNWLYFISDPTLTALFVESALGCEGLPPTGLTERRLTKTDANILRV 134

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
              +++  L+   S   +   +L D   +D ++      ++  V +  + +         
Sbjct: 135 MFRRVTRALSHAFSILVDVQLDLGD--VVDKIELEPQLSTSSPVISARLAIEYFGQTGIL 192

Query: 198 VLIIPQETLLKTTLISL----------SSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            ++IPQ  +     +            +  +             + +  +  + ++  + 
Sbjct: 193 TIVIPQAAIEPVRDLLAVASAGEAVGAAPPSARAYDDTSWSKQLSEEIARAFIGLNGILE 252

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            +  +L +V    +G V+           L A+   ++ CELG+     T+RI D  + +
Sbjct: 253 ERPISLGEVQRFAVGSVVELTSTSLARVRLDADEIPLFWCELGKRDGTLTLRIEDDFDQN 312

Query: 308 QKSLKNF 314
           ++++  F
Sbjct: 313 KETIDEF 319


>gi|254446496|ref|ZP_05059972.1| flagellar motor switch protein FliM, putative [Verrucomicrobiae
           bacterium DG1235]
 gi|198260804|gb|EDY85112.1| flagellar motor switch protein FliM, putative [Verrucomicrobiae
           bacterium DG1235]
          Length = 338

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 89/273 (32%), Gaps = 5/273 (1%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
                 + ++L       + L+  +  +   +  +S    +           +       
Sbjct: 67  RIRHEEFIRYLAARLSIFLRLEYSLKMSRLSTLTYSKFTETIPNPAHVVLFKIEQLFGVG 126

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I  +  L +T+++ +LG           R L+ +E  L    +  +     +   + QE
Sbjct: 127 VIDINPRLALTMVDRMLGGKG--HSVQGERYLTEIETNLVDDVVGIVLEEWCRQWKSEQE 184

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
               +         +      ++  +  ++M   + + + +  + +P  TL         
Sbjct: 185 LDTTI--IGHESNGRFLETSPADAIMLVLSMEAGVGDCSETIQIGLPYYTLEPIIKRMHE 242

Query: 216 SQNKSENQS-EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           ++ K            +     Q+++ +    + +  T K+V+ L+ G VI F       
Sbjct: 243 AKEKDLGMDLTQAESSWQSSFNQIDIPVQAEWDGQTLTTKEVMNLRPGDVIRFPKTVLKD 302

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             +  +    ++ E+G       +++  ++  +
Sbjct: 303 TRVRLSNSIKFTGEVGLENDRVAVKLDKKLEEE 335


>gi|319409195|emb|CBI82839.1| Flagellar motor switch protein FliM [Bartonella schoenbuchensis R1]
          Length = 335

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 108/303 (35%), Gaps = 3/303 (0%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
            +L   +    G           +       L         L+      S  + K   II
Sbjct: 34  DVLAQHILRAAGLSSDDLMSFQYVFRDAASSLCAQLGHYTSLEFSTDVQSLDTLKSDKII 93

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            +   + +    S S W  +        LV  + E   GA+   +     R  S  E K+
Sbjct: 94  QTIGTDTLLIYFSSSLWGDDVIFVLDATLVDLITEAFFGAAEPKLINRNGRPFSPTEYKI 153

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           ++     ++  ++    T   S    +        + N        + +  + +    + 
Sbjct: 154 SEYFGKLLANTMDGIFGTGDGSLLLFKQILKAQ--EFNAETFHQSQMFSCTLGVKCNEIE 211

Query: 195 SSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
           ++  +++P+            + +  +++          ++  + +V+I+  I     TL
Sbjct: 212 TNVNILMPRSCHRPIQEAVTRALRAPAKHTDPLWAKRLKQEVSRAHVSIEAFIQQGSMTL 271

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
            ++  L++GQV+           L +  K +Y C LG++G N++IR+TD I+ +++ +  
Sbjct: 272 DELSKLQVGQVLSLPANAVKQIKLRSGKKSLYKCSLGKMGTNFSIRVTDPIDEEKEMIDE 331

Query: 314 FLH 316
            +H
Sbjct: 332 LVH 334


>gi|24496480|gb|AAN60221.1| FliM [Fervidobacterium sp. YNP]
          Length = 165

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 5/164 (3%)

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              +     P +E        +      S+E V  I   ++   V     L  P   +  
Sbjct: 1   AWMSVHPFIPVVE--STETNPQFVQIVPSSEMVLAITFFVSFGKVEGYMSLCWPSSVIEP 58

Query: 209 TTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                      + K +  +E+ I+       +  +++   I     TL +++TL++G VI
Sbjct: 59  IGEKLTTQSWFKVKQKEITEEHIEKLKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVI 118

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                      +  NG+  +  + G+   NY ++IT+ I   ++
Sbjct: 119 RLKEHYDEPIRVEVNGRTKFLGKPGQYKGNYAVKITEVIEEPKE 162


>gi|312115267|ref|YP_004012863.1| flagellar motor switch protein FliM [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220396|gb|ADP71764.1| flagellar motor switch protein FliM [Rhodomicrobium vannielii ATCC
           17100]
          Length = 314

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 100/309 (32%), Gaps = 6/309 (1%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M  QS    T      ++ +L            + +S+           F+E     V  
Sbjct: 1   MASQSPDAATGAG-VEIIDKLKELSKLSLDRLPVLTSIFEGMALSCCDEFREYCSPAVTA 59

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
                 SG    ++ +  +           W +   IG    LV ++++ + G     +P
Sbjct: 60  FVNQIVSGDSWDLLEACSDGVS-VIFYCREWDARIVIGVERRLVFSIVDAMYGGDGSELP 118

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               RS + +E K+ +      +    +   T  E +   E       L   +    N  
Sbjct: 119 YEDKRSFTALETKIGRVICEFGARSFTESFRTVGEITLAPERTETA--LDFASLGQHNMM 176

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLN 239
           +    +   + +V     ++IPQ  LL         +     +         +++  +  
Sbjct: 177 LIHAQILFQVLDVGGVMFVLIPQNVLLPVRQKLERQRAPMLSSVDPRWTSLLSQRVSRAE 236

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +D  I  K+  L  +  L++G+ +     E+        G  ++   LGR    YT+ 
Sbjct: 237 VTMDAVILGKEIELGQMFKLEVGKTLELEGTERN-IFFEYEGDRLFRGCLGRERGTYTVT 295

Query: 300 ITDRINFDQ 308
           I + ++   
Sbjct: 296 IDEALSDID 304


>gi|225872620|ref|YP_002754077.1| putative flagellar motor switch protein FliM [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793214|gb|ACO33304.1| putative flagellar motor switch protein FliM [Acidobacterium
           capsulatum ATCC 51196]
          Length = 316

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 93/304 (30%), Gaps = 12/304 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
                 N  P +       +      +   +  SSL  L+ + L       + +   I  
Sbjct: 25  QPEADANVRPYN------YSRAGQISREQLRSISSLNDLFARNLGINLGAWLGMQCRIQL 78

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            S +   F   +    +    +   L    +   +      V ++++ LLG   +     
Sbjct: 79  VSAEQIPFEEFVMRGADLSFIASLRLEPLRAVAILQMELAPVPSMIDALLGGIGQPGEV- 137

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R L+++E+ +    +  I   L+    +    S   E        +        E   
Sbjct: 138 --RELTSIEEAIVAHVVELICRELSSAWQSI-GLSFYFESRQM--QTQMARLLPIKERAL 192

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
            ++  + + + +    + +P               +  +  SE+          +++V  
Sbjct: 193 CLSFEIRLPSASGLLHIALPAVVSNTVLRSLRGDLHPQKEHSEETRAKMRGLVKKVSVGT 252

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             ++   +  ++++  L+ GQV+ F    KT   L   G  ++     R G+     I  
Sbjct: 253 ALQLAPARIPMRELEGLEAGQVVVFPVTAKTRPELLVAGVPLFQAVPVRSGERRAAHIES 312

Query: 303 RINF 306
               
Sbjct: 313 LPPE 316


>gi|23007978|ref|ZP_00049614.1| COG1868: Flagellar motor switch protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 269

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 71/235 (30%), Gaps = 3/235 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            + AR+    G       +   +            K         S     SG+F   + 
Sbjct: 37  DIRARILEAGGLSLDRLPMLHVVFDRLATACSDAAKHLAASSTFYSLNGIASGRFGEFLD 96

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           ++  N V        W  +  +G   + + T++E L G+     P    R+ S +E ++A
Sbjct: 97  AYDANAVVGIFHAPEWDGHILVGLDRDFLYTMVEVLFGSDGSEPPVEDERNFSAIELRIA 156

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +    Q+   L        ++   LE       ++       +         +   N   
Sbjct: 157 QMVFEQVGKALESSFGLVSQTPFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 214

Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
              L+IPQ  L             +S  +     +  A +  + NV +   +  +
Sbjct: 215 EMFLVIPQTVLNPLRPALSKVLTGESAARDPHWAEQIAAEVQKTNVRLKAVLEER 269


>gi|306841070|ref|ZP_07473793.1| surface presentation of antigen protein [Brucella sp. BO2]
 gi|306288908|gb|EFM60211.1| surface presentation of antigen protein [Brucella sp. BO2]
          Length = 253

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 97/251 (38%), Gaps = 2/251 (0%)

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   +R
Sbjct: 2   ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDADR 61

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T     P       ID    + +      + T +
Sbjct: 62  PFGMVEQKIANLLAGHLAGALDRVFNTGSS-QPLFAPGDCIDTADFDRDNFELSRLFTCH 120

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
           + +T         L++P+ T         +  +   +           ++  +  + ++ 
Sbjct: 121 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 180

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +
Sbjct: 181 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 240

Query: 305 NFDQKSLKNFL 315
           N ++  +   +
Sbjct: 241 NQEEDLIDELV 251


>gi|307293811|ref|ZP_07573655.1| surface presentation of antigens (SPOA) protein [Sphingobium
           chlorophenolicum L-1]
 gi|306879962|gb|EFN11179.1| surface presentation of antigens (SPOA) protein [Sphingobium
           chlorophenolicum L-1]
          Length = 299

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 79/284 (27%), Gaps = 9/284 (3%)

Query: 24  KLGDKKTIEKI--SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81
             G+ +    +     LG    + L  + +    +   ++    ++ +F        ++ 
Sbjct: 10  GRGESQAPLMLSGLDRLGEKLGRRLRALIEPIAGVRPHVAVHDARALEFGAWNAEVPDSS 69

Query: 82  VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
                 L+       +     ++ TL++   G              +  E +L  R    
Sbjct: 70  SIGVYRLAPLKGQVLLRLDATMISTLVDCFYGGIGNRALPPRG-EFTPTEDRLIARISDA 128

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLI 200
             A L +C S        L        +         E +      ++I  +      L+
Sbjct: 129 FMARLVECWSDMLTLDAGLIVRET--GVGFAAAAQPGEQMVLQRFMLSISRDAEWPIDLL 186

Query: 201 IPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
            P   L     +  +     + +         A +   + +   T +     +L +++ L
Sbjct: 187 FPLSALRNVEGLMGARIPIDDERADPIWQARIAARMRDIRLPARTVLARPDLSLAELMQL 246

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           K G VIP          L    + +    +G        +I   
Sbjct: 247 KAGDVIPV--TINRSLPLIVGDRIVAHGTIGEQDGRAAFQIEKI 288


>gi|229058412|ref|ZP_04196796.1| Flagellar motor switch protein [Bacillus cereus AH603]
 gi|228719921|gb|EEL71511.1| Flagellar motor switch protein [Bacillus cereus AH603]
          Length = 328

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 91/281 (32%), Gaps = 8/281 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSAVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                   ++ ++ +N+NM  E   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTPSDIISLLNVNMKTEFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTIGEIEKIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           IP   +         +GK  ++C +G+ G    +     I 
Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328


>gi|94495436|ref|ZP_01302016.1| flagellar switch protein [Sphingomonas sp. SKA58]
 gi|94424824|gb|EAT09845.1| flagellar switch protein [Sphingomonas sp. SKA58]
          Length = 295

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 76/290 (26%), Gaps = 7/290 (2%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
                     +      LG    + +  + +    +  ++     +   F+         
Sbjct: 10  FGRGELQAPVMLSGLDRLGDKLGRRIRALIEPIAGVRPNVQAQDARVLDFAAWSAQVPSF 69

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
              S   +        +     ++ TL++   G        +     +  E +L  R   
Sbjct: 70  TSISLYRILPLKGQMLLRLDAGMISTLVDCFYGGIGNRPLPVRG-EFTPTEDRLIARISE 128

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI-ENVASSFVL 199
            +   + +  +       +L        +         + +      +T+  +      L
Sbjct: 129 TLMVRMVESWADVLPLDASL--ILRETGVGYAAAAQPADQMVLQRFVVTLTRDQEWPIDL 186

Query: 200 IIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           + P   L     ++ +      +          AR+   + +   T +     +L D++ 
Sbjct: 187 LFPLSALRAVEALTGAKVPADDDQADPVWQGRIARRMRDIRLPARTVLARPNLSLADLME 246

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           LK+G VIP          L    + +    +G        +I        
Sbjct: 247 LKVGDVIPV--TIGRALPLIVGNRIVAHGTIGEQDGRAAFQIEKLAQETD 294


>gi|294013062|ref|YP_003546522.1| flagellar motor switch protein FliM [Sphingobium japonicum UT26S]
 gi|292676392|dbj|BAI97910.1| flagellar motor switch protein FliM [Sphingobium japonicum UT26S]
          Length = 294

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 80/283 (28%), Gaps = 9/283 (3%)

Query: 24  KLGDKKTIEKI--SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81
             G+ +    +     LG    + L  + +        +     ++ +F    H    + 
Sbjct: 10  GRGESQAPLMLSGLDRLGEKLGRRLRALIEPIAGARPHVVAQDARALEFGAWAHEVPGSA 69

Query: 82  VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
                 L+       +     ++ TL++   G              +  E +L  R    
Sbjct: 70  SIGVYRLAPLKGQVLLRLDAEMISTLVDCFYGGIGNRALPPRG-EFTPTEDRLIARISEA 128

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLI 200
             A L +C S        L        +         E +      ++I  +      L+
Sbjct: 129 FIARLVECWSDMLALEAGLIVRET--GIGFAAAAQPGEQMVLQRFLISISRDAEWPIDLL 186

Query: 201 IPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
            P  +L     +  +     + +         A++  ++ +   T +     +L +++ L
Sbjct: 187 FPLSSLRAVEPLMGNRIPVDDERADPVWQARIAQRMREIRLPARTVLARPDLSLAELMQL 246

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           K G +IP          L    + +    +G        +I  
Sbjct: 247 KAGDIIPV--TINRSLPLIVGDRIVAHGSIGEQDGRAAFQIEK 287


>gi|300117313|ref|ZP_07055103.1| flagellar motor switch protein FliM [Bacillus cereus SJ1]
 gi|298725148|gb|EFI65800.1| flagellar motor switch protein FliM [Bacillus cereus SJ1]
          Length = 328

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +D+  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E        + +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFSLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|229017049|ref|ZP_04173968.1| Flagellar motor switch protein [Bacillus cereus AH1273]
 gi|229023230|ref|ZP_04179740.1| Flagellar motor switch protein [Bacillus cereus AH1272]
 gi|228738024|gb|EEL88510.1| Flagellar motor switch protein [Bacillus cereus AH1272]
 gi|228744222|gb|EEL94305.1| Flagellar motor switch protein [Bacillus cereus AH1273]
          Length = 328

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 8/281 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   + F  +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTFSARMRIPIELEPSAVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E        A +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 QQSFESVVAIKPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           IP   +         +GK  ++C +G+ G    +     I 
Sbjct: 288 IPLHTKVTDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328


>gi|54307255|ref|YP_128275.1| hypothetical protein PBPRA0018 [Photobacterium profundum SS9]
 gi|46911675|emb|CAG18473.1| Hypothetical protein PBPRA0018 [Photobacterium profundum SS9]
          Length = 296

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 34/298 (11%), Positives = 90/298 (30%), Gaps = 15/298 (5%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
                         G       ++ I  ++   +++   + F   +   V+ S+    + 
Sbjct: 14  EVRDFDLASPEHRIGA------LQAIIDNVCKQFERSARQSFHHLLRHPVEFSFDQQDTL 67

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K    +   K+  ++ + ++S    +  +     L+  +++              N  +S
Sbjct: 68  KLQDYLQQLKKPCLYREFTVSPHDLHGTVSIDGELLFFMVDLFF--GGNGNNIRRNNDMS 125

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E +L +R              +      +L    + + L+      +N+        +
Sbjct: 126 DTELRLVERFFNLALEQFAHGWHSITSWHNHLT---EKNTLRLGNPMQNNQLYQVCRFTI 182

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
            +      F + +P   L          +        +L      K  Q  + + T +  
Sbjct: 183 DVCGHKGWFEIALPFAGLDFLRDQ--QCKAADIETDPELQAKIQTKICQTPMRLTTTLCE 240

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +   L  V+ LK G +IP      +   + A    +++  +     +  ++I   I  
Sbjct: 241 RSLALGKVMDLKTGDIIPVELP--SEVTVRAGKTSLFTARIAEHNASLVLQIQSIIKQ 296


>gi|229011056|ref|ZP_04168250.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
 gi|228750228|gb|EEM00060.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
          Length = 328

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 8/281 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +    L  R L+  E        A +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFLMRRPLTAFEFLTLDNIFALLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 QQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           IP   +         +GK  ++C +G+ G    +     I 
Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328


>gi|254517014|ref|ZP_05129072.1| Surface presentation of antigens protein [gamma proteobacterium
           NOR5-3]
 gi|219674519|gb|EED30887.1| Surface presentation of antigens protein [gamma proteobacterium
           NOR5-3]
          Length = 327

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 98/303 (32%), Gaps = 10/303 (3%)

Query: 4   QSIHKNTSPLHPI---LLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
           +S+   TS           R      ++  + +      L     + L    +    ++ 
Sbjct: 17  ESVDDGTSAADAADDGQFRRFDFAAREQSLLREFTALGPLIERQAEMLGVALESGFSIEF 76

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
            +   + +    +  + S + +   + +SLS  +   F      L+  ++    G     
Sbjct: 77  TVLAQTPELLSVADAVASLERSVAVTNSSLSPLAGPVFAIAPAELLSFVVNAYFGGGSAA 136

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
                  SL+  E +LA+R      + ++Q  +              +    +     S+
Sbjct: 137 PSDSSRSSLTPTELRLAERIAEFQLSSISQAWTDKLALEAGE--LTTLGVPDRLEMLPSS 194

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS-EDLIDPFARKTYQ 237
           + +  I  +++    +S   L++P   L       L  + K E    +     F R+   
Sbjct: 195 DMLLRIAFSLSAGEFSSQISLMLPFAALEPYRERFLPPRKKDEVSDGKSWEPFFRRELPG 254

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + + +   +  +   L D++ L+ G VIP          L+ +   +     G       
Sbjct: 255 IELEVAGVLATQSIALADLLQLQAGMVIPIKPP--EEVRLNIDNVTLAEGRYGSFDGVKA 312

Query: 298 IRI 300
           +++
Sbjct: 313 VQL 315


>gi|218508217|ref|ZP_03506095.1| flagellar C-ring motor switch protein [Rhizobium etli Brasil 5]
          Length = 188

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 97/187 (51%)

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +E  LA     +I+ VL   ++      P+L   +  D   +      +EF   INM++T
Sbjct: 2   IELDLAVMVFDKIANVLRSAVNAPGGFEPSLSAPHAPDARPRPPEDKPDEFAAAINMSLT 61

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           +  + S F LI+PQ  LLKT + +   + ++   S +  +    +  + +V ++ RI L+
Sbjct: 62  LAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQ 121

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D +
Sbjct: 122 DLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDE 181

Query: 310 SLKNFLH 316
            +++ ++
Sbjct: 182 LIRHLMN 188


>gi|255026111|ref|ZP_05298097.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J2-003]
          Length = 300

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 18  AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 77

Query: 87  SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      +I + E L G + +       R LS  E+   K  + +    
Sbjct: 78  DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 136

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L     +    SP + +               N+ +  +++++  E   S+  + +P  +
Sbjct: 137 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 194

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +      +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+
Sbjct: 195 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 254

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                 +         K  + C +G+ G    ++
Sbjct: 255 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 288


>gi|152975177|ref|YP_001374694.1| flagellar motor switch protein FliM [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023929|gb|ABS21699.1| flagellar motor switch protein FliM [Bacillus cytotoxicus NVH
           391-98]
          Length = 328

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 90/273 (32%), Gaps = 8/273 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIAASFGKQTSQSLAARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      +I + E  LG   +       R L+  E        + +   L
Sbjct: 111 LGLPELGEIVIEMDLAFIIYIHECWLGGDSKR-DFSIRRPLTAFEFLTLDNVFSILCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+N+  E   ++  + IP  ++
Sbjct: 170 EQSFESIVAIQPKFVTTETDPN--ALKITTASDIISLLNVNLKTEYWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                   S      +  +          K +Q+   I   +  +K T+ ++  ++ G +
Sbjct: 228 EDIMDKLTSENIVEHSSDKRKKYTSEVEAKVHQVYKPIHIALGEQKMTIGELEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           IP   +         +GK  ++C +G+      
Sbjct: 288 IPLHTKVTDQLCGYVDGKHKFNCFIGKDKTRKA 320


>gi|206974807|ref|ZP_03235722.1| putative flagellar motor switch protein FliM [Bacillus cereus
           H3081.97]
 gi|229195975|ref|ZP_04322728.1| Flagellar motor switch protein [Bacillus cereus m1293]
 gi|206746826|gb|EDZ58218.1| putative flagellar motor switch protein FliM [Bacillus cereus
           H3081.97]
 gi|228587534|gb|EEK45599.1| Flagellar motor switch protein [Bacillus cereus m1293]
          Length = 328

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +D+  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E        A +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLMNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +         +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKAL 321


>gi|118477197|ref|YP_894348.1| flagellar motor switch protein FliM [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863621|ref|YP_002748999.1| putative flagellar motor switch protein FliM [Bacillus cereus
           03BB102]
 gi|229121315|ref|ZP_04250546.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
 gi|229183955|ref|ZP_04311170.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
 gi|118416422|gb|ABK84841.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225786262|gb|ACO26479.1| putative flagellar motor switch protein FliM [Bacillus cereus
           03BB102]
 gi|228599480|gb|EEK57085.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
 gi|228662160|gb|EEL17769.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
          Length = 328

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|163939573|ref|YP_001644457.1| flagellar motor switch protein FliM [Bacillus weihenstephanensis
           KBAB4]
 gi|229166618|ref|ZP_04294370.1| Flagellar motor switch protein [Bacillus cereus AH621]
 gi|163861770|gb|ABY42829.1| flagellar motor switch protein FliM [Bacillus weihenstephanensis
           KBAB4]
 gi|228616872|gb|EEK73945.1| Flagellar motor switch protein [Bacillus cereus AH621]
          Length = 328

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 8/281 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  E   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   +  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           IP   +         +GK  ++C +G+ G    +     I 
Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328


>gi|196033337|ref|ZP_03100749.1| putative flagellar motor switch protein FliM [Bacillus cereus W]
 gi|195993771|gb|EDX57727.1| putative flagellar motor switch protein FliM [Bacillus cereus W]
          Length = 328

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFTLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|229132591|ref|ZP_04261439.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
 gi|228650823|gb|EEL06810.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
          Length = 328

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 8/281 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  E   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   +  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           IP   +         +GK  ++C +G+ G    +     I 
Sbjct: 288 IPLHTKVTDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328


>gi|47565432|ref|ZP_00236473.1| flagellar motor switch protein (fliM), putative [Bacillus cereus
           G9241]
 gi|47557422|gb|EAL15749.1| flagellar motor switch protein (fliM), putative [Bacillus cereus
           G9241]
          Length = 328

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +D+  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E        A +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|229029443|ref|ZP_04185526.1| Flagellar motor switch protein [Bacillus cereus AH1271]
 gi|228731902|gb|EEL82801.1| Flagellar motor switch protein [Bacillus cereus AH1271]
          Length = 328

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E        A +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGFVDGKHKFNCFIGKDGTRKAL 321


>gi|196045129|ref|ZP_03112362.1| putative flagellar motor switch protein FliM [Bacillus cereus
           03BB108]
 gi|196024131|gb|EDX62805.1| putative flagellar motor switch protein FliM [Bacillus cereus
           03BB108]
          Length = 328

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ D+  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGDIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|227876753|ref|ZP_03994862.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35243]
 gi|269976280|ref|ZP_06183276.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris
           28-1]
 gi|306817700|ref|ZP_07451442.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35239]
 gi|307699817|ref|ZP_07636868.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16]
 gi|227842650|gb|EEJ52850.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35243]
 gi|269935609|gb|EEZ92147.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris
           28-1]
 gi|304649514|gb|EFM46797.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35239]
 gi|307614855|gb|EFN94073.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16]
          Length = 307

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/307 (8%), Positives = 86/307 (28%), Gaps = 10/307 (3%)

Query: 9   NTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             S       A+    +  +   +   +I       + +        ++ + +  S    
Sbjct: 3   KQSKADRAAEAKVYDFSKPMKLPREYARIMELALEAFTRSWINQLVGRLHVVITGSAGDL 62

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
               +   I               +  +   +       +  +++LLG   + I    +R
Sbjct: 63  VMRSYDDYIAKMPSTTCMVIMDFQNGRNKGILQFPRQTALAWVDHLLGGQGD-IESTPDR 121

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
            L+ VE  +    + ++   L+   +        L +       +       +  +    
Sbjct: 122 QLTEVEVSILSDFLKRVMMDLDMAFAGMLPLETKLLNLEYA--PQFVQAYDGSTPILFAP 179

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL----IDPFARKTYQLNVN 241
           + +T         +++P   +        ++ +    + +               ++ V 
Sbjct: 180 ITLTTGEHVDDCSIMMPVAMITDAIHKGDANADTRSEEQKREAAIMRQRLVDNLEEIPVE 239

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +  R + +K   +++  L +G  +P +H       L  +   +     G  G      + 
Sbjct: 240 VAVRFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILAEAAAGTSGSRLAAMVV 299

Query: 302 DRINFDQ 308
                ++
Sbjct: 300 SVNKGEK 306


>gi|324325781|gb|ADY21041.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 328

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQSLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E        A +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|229160725|ref|ZP_04288717.1| Flagellar motor switch protein [Bacillus cereus R309803]
 gi|228622740|gb|EEK79574.1| Flagellar motor switch protein [Bacillus cereus R309803]
          Length = 328

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 95/274 (34%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQALSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         +      VI + E  LG   +       R L+  E        A I   L
Sbjct: 111 LGLPELGEIVVEIDLAFVIYIHECWLGGDSKR-TFTMRRPLTAFEFLTLDNIFALICKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      S ++ +        K  QL   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKRYTSEVEVKVNQLYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDQLLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|229155334|ref|ZP_04283444.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
 gi|228628049|gb|EEK84766.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
          Length = 328

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  E   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|196039000|ref|ZP_03106307.1| putative flagellar motor switch protein FliM [Bacillus cereus
           NVH0597-99]
 gi|301053301|ref|YP_003791512.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|196030145|gb|EDX68745.1| putative flagellar motor switch protein FliM [Bacillus cereus
           NVH0597-99]
 gi|300375470|gb|ADK04374.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 328

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     I   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELIGYVDGKHKFNCFIGKDGTRKAL 321


>gi|47091661|ref|ZP_00229457.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 4b
           H7858]
 gi|47019980|gb|EAL10717.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 4b
           H7858]
 gi|328467265|gb|EGF38345.1| flagellar motor switch protein FliM [Listeria monocytogenes 1816]
          Length = 330

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      +I + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L     +    SP + +               N+ +  +++++  E   S+  + +P  +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +      +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEACIRVGEIKTTWKELNKLEVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                 +         K  + C +G+ G    ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|49477321|ref|YP_035882.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|218902877|ref|YP_002450711.1| putative flagellar motor switch protein FliM [Bacillus cereus
           AH820]
 gi|228914341|ref|ZP_04077956.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926799|ref|ZP_04089867.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933047|ref|ZP_04095910.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228984848|ref|ZP_04145018.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229090726|ref|ZP_04221959.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
 gi|254723848|ref|ZP_05185634.1| flagellar motor switch protein FliM [Bacillus anthracis str. A1055]
 gi|49328877|gb|AAT59523.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|218538906|gb|ACK91304.1| putative flagellar motor switch protein FliM [Bacillus cereus
           AH820]
 gi|228692668|gb|EEL46394.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
 gi|228774798|gb|EEM23194.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228826648|gb|EEM72419.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832912|gb|EEM78481.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845335|gb|EEM90371.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 328

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|46906950|ref|YP_013339.1| flagellar motor switch protein FliM [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|217965203|ref|YP_002350881.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|226223330|ref|YP_002757437.1| flagellar switch protein FliM [Listeria monocytogenes Clip81459]
 gi|254824021|ref|ZP_05229022.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J1-194]
 gi|254853097|ref|ZP_05242445.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           R2-503]
 gi|254932021|ref|ZP_05265380.1| flagellar motor switch protein FliM [Listeria monocytogenes
           HPB2262]
 gi|254994391|ref|ZP_05276581.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J2-064]
 gi|290893996|ref|ZP_06556971.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J2-071]
 gi|300764511|ref|ZP_07074504.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           N1-017]
 gi|46880216|gb|AAT03516.1| flagellar motor switch protein FliM [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|217334473|gb|ACK40267.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|225875792|emb|CAS04495.1| Putative flagellar switch protein FliM [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606446|gb|EEW19054.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           R2-503]
 gi|290556442|gb|EFD89981.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J2-071]
 gi|293583573|gb|EFF95605.1| flagellar motor switch protein FliM [Listeria monocytogenes
           HPB2262]
 gi|293593249|gb|EFG01010.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J1-194]
 gi|300514865|gb|EFK41919.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           N1-017]
 gi|307570238|emb|CAR83417.1| fliM [Listeria monocytogenes L99]
 gi|313610117|gb|EFR85440.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           F2-208]
 gi|332311124|gb|EGJ24219.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 330

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      +I + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L     +    SP + +               N+ +  +++++  E   S+  + +P  +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +      +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                 +         K  + C +G+ G    ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|16802741|ref|NP_464226.1| flagellar motor switch protein FliM [Listeria monocytogenes EGD-e]
 gi|47095265|ref|ZP_00232876.1| flagellar motor switch protein FliM [Listeria monocytogenes str.
           1/2a F6854]
 gi|224498781|ref|ZP_03667130.1| flagellar motor switch protein FliM [Listeria monocytogenes Finland
           1988]
 gi|224501996|ref|ZP_03670303.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           R2-561]
 gi|254829356|ref|ZP_05234043.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           N3-165]
 gi|254830310|ref|ZP_05234965.1| flagellar motor switch protein FliM [Listeria monocytogenes 10403S]
 gi|254900065|ref|ZP_05259989.1| flagellar motor switch protein FliM [Listeria monocytogenes J0161]
 gi|254911382|ref|ZP_05261394.1| flagellar motor switch protein FliM [Listeria monocytogenes J2818]
 gi|254935709|ref|ZP_05267406.1| flagellar motor switch protein FliM [Listeria monocytogenes F6900]
 gi|284801029|ref|YP_003412894.1| flagellar motor switch protein FliM [Listeria monocytogenes
           08-5578]
 gi|284994171|ref|YP_003415939.1| flagellar motor switch protein FliM [Listeria monocytogenes
           08-5923]
 gi|315281360|ref|ZP_07870000.1| flagellar motor switch protein FliM [Listeria marthii FSL S4-120]
 gi|16410088|emb|CAC98777.1| lmo0699 [Listeria monocytogenes EGD-e]
 gi|47016336|gb|EAL07258.1| flagellar motor switch protein FliM [Listeria monocytogenes str.
           1/2a F6854]
 gi|258601769|gb|EEW15094.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           N3-165]
 gi|258608292|gb|EEW20900.1| flagellar motor switch protein FliM [Listeria monocytogenes F6900]
 gi|284056591|gb|ADB67532.1| flagellar motor switch protein FliM [Listeria monocytogenes
           08-5578]
 gi|284059638|gb|ADB70577.1| flagellar motor switch protein FliM [Listeria monocytogenes
           08-5923]
 gi|293589319|gb|EFF97653.1| flagellar motor switch protein FliM [Listeria monocytogenes J2818]
 gi|313614999|gb|EFR88503.1| flagellar motor switch protein FliM [Listeria marthii FSL S4-120]
          Length = 330

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      +I + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L     +    SP + +               N+ +  +++++  E   S+  + +P  +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +      +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                 +         K  + C +G+ G    ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|42780856|ref|NP_978103.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 10987]
 gi|217959246|ref|YP_002337794.1| flagellar motor switch protein FliM [Bacillus cereus AH187]
 gi|222095386|ref|YP_002529446.1| flagellar motor switch protein flim [Bacillus cereus Q1]
 gi|229138463|ref|ZP_04267052.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
 gi|42736776|gb|AAS40711.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 10987]
 gi|217068243|gb|ACJ82493.1| putative flagellar motor switch protein FliM [Bacillus cereus
           AH187]
 gi|221239444|gb|ACM12154.1| flagellar motor switch protein FliM [Bacillus cereus Q1]
 gi|228645000|gb|EEL01243.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
          Length = 328

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +D+  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E        A +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGFVDGKHKFNCFIGKDGTRKAL 321


>gi|52143697|ref|YP_083133.1| flagellar motor switch protein FliM [Bacillus cereus E33L]
 gi|228945366|ref|ZP_04107721.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|51977166|gb|AAU18716.1| flagellar motor switch protein M [Bacillus cereus E33L]
 gi|228814338|gb|EEM60604.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 328

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLRTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|229096248|ref|ZP_04227221.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
 gi|229115203|ref|ZP_04244613.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
 gi|228668343|gb|EEL23775.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
 gi|228687208|gb|EEL41113.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
          Length = 328

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ D+  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMSDIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|228920473|ref|ZP_04083818.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229069314|ref|ZP_04202604.1| Flagellar motor switch protein [Bacillus cereus F65185]
 gi|229109219|ref|ZP_04238818.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
 gi|229178171|ref|ZP_04305542.1| Flagellar motor switch protein [Bacillus cereus 172560W]
 gi|228605301|gb|EEK62751.1| Flagellar motor switch protein [Bacillus cereus 172560W]
 gi|228674229|gb|EEL29474.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
 gi|228713801|gb|EEL65686.1| Flagellar motor switch protein [Bacillus cereus F65185]
 gi|228839103|gb|EEM84399.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 328

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEMKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|284041533|ref|YP_003391873.1| surface presentation of antigens (SPOA) protein [Conexibacter
           woesei DSM 14684]
 gi|283945754|gb|ADB48498.1| surface presentation of antigens (SPOA) protein [Conexibacter
           woesei DSM 14684]
          Length = 322

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 97/291 (33%), Gaps = 10/291 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +      + T     ++ I +        + +        ++ + +++   +     +S 
Sbjct: 38  VDFARPTKFT--SEQERRIVRTLDM----FCQTAAARLTAELRVPLELEVINTTQLTWSA 91

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
                    + +   ++   +   +      V+  +E LLG + E  P+   R LS ++ 
Sbjct: 92  AQQQLPPASLGTPLEVAPHDTRMLMTAELPFVLMAIEYLLGGAPERPPR--QRKLSEIDW 149

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L+KR    ++  L+         +  L       +++       +E   TI +   I  
Sbjct: 150 VLSKRLFETLTTQLSIVWQDLAGQT--LAAQEVDSHVEGMQVAAISEPTLTITLESRINR 207

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
            +S+  L+IP  ++            ++                  +V +   +   +  
Sbjct: 208 HSSTLALLIPWVSIDPVADQIAGRDLRTRADDPRAAALVQAALSGAHVTMRAEVGSVEMA 267

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           + DV+ L  G ++          ++ A    I+  + GR G    ++I DR
Sbjct: 268 IDDVLGLAPGDLVKLSSLAADGVVVYAEDVPIHHAQPGRSGARRAVQIVDR 318


>gi|229189861|ref|ZP_04316871.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
 gi|228593535|gb|EEK51344.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
          Length = 328

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  E   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGQQKMTMSEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|262273545|ref|ZP_06051359.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
 gi|262222523|gb|EEY73834.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
          Length = 296

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 93/298 (31%), Gaps = 16/298 (5%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P        LT        +     ++   ++    + F+  +   V+ +Y    + 
Sbjct: 15  DVRPYD------LTSPEHRIGAVLATIDNVCKQFETLAKQAFQHILRCPVEFTYQQQHTE 68

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
                + +  E  ++ + ++S    N  +     L   L++   G       +     +S
Sbjct: 69  TLQDHLKAMGEQSLYREFTVSPHHFNGVLVIEKELQFLLVDLFFGGKGIVKARTT---IS 125

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E ++  R   Q+         +       L      + L     R  ++        M
Sbjct: 126 DTEWRMMARFFGQMLDQYAIAWQSVSPWQCQL---QPKENLDLENTRQDSQLHQICRFTM 182

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
            +        + +P   L         + +     + +L         +  + + + +  
Sbjct: 183 NVCGHQGWIDISLPLNGLDFLRH--RHATDDDAATAPELQHIVNATLKKAPIRLLSTLCE 240

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           ++ +L D++ LK+G VIP         ++ A    +++ ++        +++ + I  
Sbjct: 241 RQLSLGDIMALKVGDVIPVELP--GEVVVRAGRTPLFTAKVAEQNATLVLQVQNVIEQ 296


>gi|228952146|ref|ZP_04114238.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|46019719|emb|CAG25464.1| FliM protein [Bacillus thuringiensis serovar alesti]
 gi|228807500|gb|EEM54027.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 328

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +    +     K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYMSEVEMKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|213419486|ref|ZP_03352552.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 153

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 1/154 (0%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           DI+  + +   +     +       +   L        +  S +LV   ++NL G     
Sbjct: 1   DITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRF 60

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  +  E+++  R +       +                  +     N     N
Sbjct: 61  PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPN 119

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
           + V     ++ I N+   F + +P   +     +
Sbjct: 120 DIVVNTPFHVEIGNLTGEFNICLPFSMIEPLREL 153


>gi|30019808|ref|NP_831439.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 14579]
 gi|206970515|ref|ZP_03231467.1| putative flagellar motor switch protein FliM [Bacillus cereus
           AH1134]
 gi|218233573|ref|YP_002366448.1| flagellar motor switch protein FliM [Bacillus cereus B4264]
 gi|228958044|ref|ZP_04119779.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229102362|ref|ZP_04233070.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
 gi|229127090|ref|ZP_04256087.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
 gi|229144376|ref|ZP_04272781.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
 gi|229149968|ref|ZP_04278194.1| Flagellar motor switch protein [Bacillus cereus m1550]
 gi|29895353|gb|AAP08640.1| Flagellar motor switch protein fliM [Bacillus cereus ATCC 14579]
 gi|206734151|gb|EDZ51321.1| putative flagellar motor switch protein FliM [Bacillus cereus
           AH1134]
 gi|218161530|gb|ACK61522.1| putative flagellar motor switch protein FliM [Bacillus cereus
           B4264]
 gi|228633490|gb|EEK90093.1| Flagellar motor switch protein [Bacillus cereus m1550]
 gi|228639007|gb|EEK95432.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
 gi|228656206|gb|EEL12047.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
 gi|228681009|gb|EEL35178.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
 gi|228801561|gb|EEM48443.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 328

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|75763360|ref|ZP_00743098.1| Flagellar motor switch protein fliM [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896697|ref|YP_002445108.1| putative flagellar motor switch protein FliM [Bacillus cereus
           G9842]
 gi|228900345|ref|ZP_04064574.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
 gi|228907396|ref|ZP_04071254.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
 gi|228938876|ref|ZP_04101476.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228964747|ref|ZP_04125854.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971757|ref|ZP_04132378.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978366|ref|ZP_04138743.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
 gi|229043519|ref|ZP_04191228.1| Flagellar motor switch protein [Bacillus cereus AH676]
 gi|74489151|gb|EAO52629.1| Flagellar motor switch protein fliM [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218542394|gb|ACK94788.1| putative flagellar motor switch protein FliM [Bacillus cereus
           G9842]
 gi|228725741|gb|EEL76989.1| Flagellar motor switch protein [Bacillus cereus AH676]
 gi|228781383|gb|EEM29584.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
 gi|228787847|gb|EEM35805.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794997|gb|EEM42496.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228820725|gb|EEM66750.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228852257|gb|EEM97053.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
 gi|228859232|gb|EEN03663.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
 gi|326939376|gb|AEA15272.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 328

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRRKYTSEVEVKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|315301944|ref|ZP_07872945.1| flagellar motor switch protein FliM [Listeria ivanovii FSL F6-596]
 gi|313629686|gb|EFR97818.1| flagellar motor switch protein FliM [Listeria ivanovii FSL F6-596]
          Length = 330

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 6/274 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTVASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      VI + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGDPELGQIIIELDLAYVIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L +   +     P +                 N+ +  +N+++  E   S+  + +P  +
Sbjct: 167 LKESFKSVHPIEPEIVSVET--NPALIRVTSPNDMMALVNVDIKSEFWISTMRIGVPFFS 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +      +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                 +         K  + C +G+ G    ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|229078945|ref|ZP_04211497.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
 gi|228704359|gb|EEL56793.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
          Length = 328

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  E   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEIKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|328475661|gb|EGF46410.1| flagellar motor switch protein FliM [Listeria monocytogenes 220]
          Length = 330

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTIASAFTKKDMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      +I + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L     +    SP + +               N+ +  +++++  E   S+  + +P  +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +      +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                 +         K  + C +G+ G    ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|229172409|ref|ZP_04299968.1| Flagellar motor switch protein [Bacillus cereus MM3]
 gi|228610880|gb|EEK68143.1| Flagellar motor switch protein [Bacillus cereus MM3]
          Length = 328

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLAARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  E   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWDTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  ++ T+ ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQRMTMGEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|323139660|ref|ZP_08074702.1| surface presentation of antigens (SPOA) protein [Methylocystis sp.
           ATCC 49242]
 gi|322395092|gb|EFX97651.1| surface presentation of antigens (SPOA) protein [Methylocystis sp.
           ATCC 49242]
          Length = 314

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 94/286 (32%), Gaps = 3/286 (1%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
                + +         +  +E  ++ V +S     + +   +    +          + 
Sbjct: 29  RMPALTLIFEETAANFTRALEEFTNIPVALSLEDLDAKRVGDLQEHCEGLSSILVYDANG 88

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            S+ F +   +      +E LLG+         +R+ S VE +L    + ++   L   +
Sbjct: 89  LSAKFAVAVDSGFRDMAVEMLLGSGVVERSDKTDRAASRVEARLVNFAVNRLLNRLAAAL 148

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           +   E     E                          +          +++P+  L    
Sbjct: 149 APVAEVQ--FEQDMLASEAGYGAVGQRGAVAIACRFRLKSLEHEGLVAIVLPRAALDPYR 206

Query: 211 LISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                        + E   +       +  V ++ +I  +  TL+D+  L++G V+    
Sbjct: 207 TALSRFPGAEGVARDERWSENLYDNIVRTEVAVNVKIEARGFTLEDIANLEVGDVLGLPI 266

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
              +   + + G+ ++ C LG+   +YT+R+ D  +  Q  ++N L
Sbjct: 267 APTSPIRIESEGRTLFWCTLGQKDGHYTVRLEDFSDERQSFIENIL 312


>gi|16799782|ref|NP_470050.1| flagellar motor switch protein FliM [Listeria innocua Clip11262]
 gi|16413159|emb|CAC95939.1| lin0707 [Listeria innocua Clip11262]
 gi|313624714|gb|EFR94669.1| flagellar motor switch protein FliM [Listeria innocua FSL J1-023]
          Length = 330

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      +I + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L     +    SP + +               N+ +  +++++  E   S+  + +P  +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +      +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                 +         K  + C +G+ G    ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|313620068|gb|EFR91581.1| flagellar motor switch protein FliM [Listeria innocua FSL S4-378]
          Length = 330

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      +I + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L     +    SP + +               N+ +  +++++  E   S+  + +P  +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +      +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                 +         K  + C +G+ G    ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|289433977|ref|YP_003463849.1| flagellar motor switch protein FliM [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170221|emb|CBH26761.1| flagellar motor switch protein FliM [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313634376|gb|EFS00971.1| flagellar motor switch protein FliM [Listeria seeligeri FSL N1-067]
 gi|313639061|gb|EFS04048.1| flagellar motor switch protein FliM [Listeria seeligeri FSL S4-171]
          Length = 330

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTVASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      VI + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGDPELGQIIIELDLAYVIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L +   +    +P +                 N+ +  +N+++  E   S+  + +P  +
Sbjct: 167 LKESFKSVHPIAPEIVSVET--NPALIRVTSPNDMMALVNVDIKSEFWISTMRIGVPFFS 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +      +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                 +         K  + C +G+ G    ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|319403952|emb|CBI77540.1| Flagellar motor switch protein FliM [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 322

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 91/289 (31%), Gaps = 3/289 (1%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
             L   +    G           +       L         L       S  + K   I 
Sbjct: 21  DALTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLSNYTSLKFTTDVQSLDTLKADQIT 80

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            +     +    +   W ++        LV    E   GAS   +     R  S +E K+
Sbjct: 81  QAIGTEALLVYFNSDRWGNDVIFVLDATLVELATEVFFGASEPMVTNRNGRPFSPIESKV 140

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
                  ++  L+            L         + N    +   + +  + +    V 
Sbjct: 141 GATFGKLLAYALDGVFG--IGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGEVE 198

Query: 195 SSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
           +   +++P+            + +  ++           ++  +  V I+  I     TL
Sbjct: 199 TYVNILMPRTCHRPIQEAVTRALRAPAKRTDPLWAKRLKQEVSRSRVRIEAFIQQGSMTL 258

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            ++ TLK+GQ++P          L +  K +Y C LG++G +++IR+T+
Sbjct: 259 NELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIRVTN 307


>gi|86157791|ref|YP_464576.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774302|gb|ABC81139.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 334

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 85/305 (27%), Gaps = 12/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S     +P       R+               ++       L      +  L + IS   
Sbjct: 29  SSRAQVAPYDLTSQDRIIRGQ------MPTLDAINEQVASMLGIGLAGRTRLALRISSAP 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
               KF+ +              L +            L   LL   LG      P+   
Sbjct: 83  ATLLKFADLAPLLAPPASVCILGLGASYGFALAVLEAGLAEALLAAALGDRRVRQPEEGG 142

Query: 125 ---RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
              R L++VE+ + +R +  ++  + Q  +      P  E        +  +     +  
Sbjct: 143 DTRRELTSVEQLVLRRLLRLLADAMTQAWAPVLPFEP--EVLRLEPDPRMASIAPPTDVG 200

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
                 +    +     L+IP   +        S +  S+   E   D  AR+  Q+ V 
Sbjct: 201 IVSGFELK-GGIEGRLHLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVE 259

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           I       +     ++ L  G+V+     E     +   G+E         G +  + + 
Sbjct: 260 IRGLYGRARIPFARLLELAEGEVLLLDTDEGRPVPVVVQGREKLLGTPTVSGGSLALVVD 319

Query: 302 DRINF 306
             +  
Sbjct: 320 QPLRP 324


>gi|296502364|ref|YP_003664064.1| flagellar motor switch protein FliM [Bacillus thuringiensis BMB171]
 gi|296323416|gb|ADH06344.1| flagellar motor switch protein FliM [Bacillus thuringiensis BMB171]
          Length = 328

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 91/274 (33%), Gaps = 8/274 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q   +     P                  +++ ++ +N+NM  +   ++  + IP  ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227

Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S      +  +          K  Q+   +   I  +K  + ++  ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMRMSEIEQIEEGDI 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           IP   +     +   +GK  ++C +G+ G    +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|197122895|ref|YP_002134846.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K]
 gi|220917687|ref|YP_002492991.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|196172744|gb|ACG73717.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K]
 gi|219955541|gb|ACL65925.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 338

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 84/305 (27%), Gaps = 12/305 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S     +P       R+               ++       L      +    + I+   
Sbjct: 33  SSRAQVAPYDLTSQDRIIRGQ------MPTLDAINEQVASMLGIGLAGRTRQALRITSAP 86

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
               KF+ +              L +            L   LL   LG      P+   
Sbjct: 87  ATLLKFADLAPLLAPPASVCILGLGASYGFALAVLEAGLAEALLAAALGDRRVRQPEEGG 146

Query: 125 ---RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
              R L++VE+ + +R +  ++  + Q  +      P  E        +  +     +  
Sbjct: 147 DTRRELTSVEQLVLRRLLRLLAEAMTQAWAPVLPFEP--EVLRLEPDPRMASIASPTDVG 204

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
                 +    +     L+IP   +        S +  S+   E   D  AR+  Q+ V 
Sbjct: 205 IVSGFELK-GGIEGRLHLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVE 263

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           I       +     ++ L  G+V+     E     +   G+E         G +  + + 
Sbjct: 264 IRGLYGRARIPFARLLELAEGEVLLLDTDEGRPVPVVVQGREKLLGTPTVSGGSLALVVD 323

Query: 302 DRINF 306
             +  
Sbjct: 324 QPLRP 328


>gi|225159021|ref|ZP_03725331.1| flagellar motor switch protein FliM [Opitutaceae bacterium TAV2]
 gi|224802400|gb|EEG20662.1| flagellar motor switch protein FliM [Opitutaceae bacterium TAV2]
          Length = 344

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 26/288 (9%), Positives = 88/288 (30%), Gaps = 5/288 (1%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
                +   +   +    L   + + L       + ++     T   +        S   
Sbjct: 57  DFRNPVFLSEVELRRLRLLHDEFIRHLGSRIALFLRMECTFRMTRLTTLTHVKFTESLPA 116

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
                            +  +  L +T+++ +LG          +R L+ +E  L +  +
Sbjct: 117 PSHICLFKADPLPGIGVLTINPRLALTIVDRMLGGRG--HSVTADRHLTEIEIALLEDML 174

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             +            E  P +      +          +  +  + +++   +   +  L
Sbjct: 175 TLLLEEWCIQWKAGPELHPQIVG--HENNGCFLQTSARDAVMLVLALDVNFGDCTGALNL 232

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ-LNVNIDTRINLKKTTLKDVVT 258
            +P   +        + +++    +        +  Y+ + + +     + + +L+++ +
Sbjct: 233 AVPYYMIETVVRDLQACRHQDNAPAARPDATGWKPVYEHIALPVRAEWPVFEASLREIAS 292

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           L++G V+           +   G E ++  +G  G    ++I  ++  
Sbjct: 293 LRVGDVLELPAGILDDTRVLLAGAEKFTGTVGVEGDRVAVKINRKLPT 340


>gi|88704280|ref|ZP_01101994.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71]
 gi|88701331|gb|EAQ98436.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71]
          Length = 327

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 86/268 (32%), Gaps = 5/268 (1%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
               L   + + L +  +    ++  +   +      +  + S +     S  +LS  + 
Sbjct: 52  ALGPLVERHAEALGEALESGFSIEFTVRGDTPSLLTVADAVASLERTVAVSTTTLSPLAG 111

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
             F     +L+  ++    G       +    +L+  E +LA+R      + +       
Sbjct: 112 PVFAIAPADLLSFVVNAYFGGGSGGPAESARSNLTPTELRLAERIAEFQLSSMINSWVDK 171

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI- 212
                   +   +    +     ++E +  I   ++  + +S+  +++P   L       
Sbjct: 172 LPLEAGEIN--TLGMPDRLEMLPASEMLLRIAFTLSAGDFSSALSVMLPFAALEPYRERF 229

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +   +     + +     F R+   + + +   +  +   L D++ L+ G VIP      
Sbjct: 230 APPRKQDDVFEGQTWEPFFRRELPGIELEVAGVLATQSIALADLLELEAGAVIPLA--PA 287

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300
               L  +   +     G       +++
Sbjct: 288 EQVSLKVDNVTLAEGRYGSFDGVKAVQL 315


>gi|322432979|ref|YP_004210228.1| flagellar motor switch protein FliM [Acidobacterium sp. MP5ACTX9]
 gi|321165206|gb|ADW70910.1| flagellar motor switch protein FliM [Acidobacterium sp. MP5ACTX9]
          Length = 321

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 98/308 (31%), Gaps = 6/308 (1%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           ++G+S     S    +L               +  +++     + L       +   +++
Sbjct: 4   IQGKSSPHAMSANSTVLPCNFRSAGRLSNESARTLTTVHETLARNLTNSLDVYLGTGLEV 63

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
                +         +          S    S+   +   ++L+ T+++ LLG S +   
Sbjct: 64  RLIHLEQFSMEDFKATCMSAAYMLPCSAKPSSNTLLLEMDSSLMFTVIDLLLGGSGKNPE 123

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               R L+ +++++ +   + I+  + +           L     +     +      E 
Sbjct: 124 --SARELTEIDEEIMEGVGSLIAQQIERAWQPVG---FVLTPGKCVKPNLAHRVFPPTEK 178

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
           V  I+  +++  V  +  +             I   S  K+       +    ++     
Sbjct: 179 VLRIHFEVSVAGVTGALYIAFQASMASHLVRNIRADSTGKTGGVVYMPLPKLQKRILDCQ 238

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
             +   I   K  ++D+  +++G V+           L+  GK  Y     R G N  ++
Sbjct: 239 FALSGDIPNLKVPVRDLARIEVGSVLMLSAPVSMPGKLTLEGKTYYEALPVRQGNNKAMQ 298

Query: 300 ITDRINFD 307
           + + I+  
Sbjct: 299 LMNAIHSK 306


>gi|289806356|ref|ZP_06536985.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 154

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 1/154 (0%)

Query: 50  FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109
               +    DI+  + +   +     +       +   L        +  S +LV   ++
Sbjct: 2   IFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVD 61

Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169
           NL G       ++  R  +  E+++  R +       +                  +   
Sbjct: 62  NLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVK 120

Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
             N     N+ V     ++ I N+   F + +P 
Sbjct: 121 FTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPF 154


>gi|319406968|emb|CBI80605.1| Flagellar motor switch protein FliM [Bartonella sp. 1-1C]
          Length = 322

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 91/289 (31%), Gaps = 3/289 (1%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
             L   +    G           +       L         L       S  + K   I 
Sbjct: 21  DALTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLSNYTSLKFMTDVQSLDTLKAEQIT 80

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            +     +    +   W ++        LV    E   GAS   I     R  S +E K+
Sbjct: 81  QAIGTEALLVYFNSDRWGNDVIFVLDATLVELATEVFFGASEPMITNRNGRPFSPIESKV 140

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
                  ++  L+            L         + N    +   + +  + +    V 
Sbjct: 141 GATFGKLLAYALDGVFG--IGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGEVE 198

Query: 195 SSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
           +   +++P+            + +  ++           ++  +  V I+  I     TL
Sbjct: 199 THVNILMPRSCHRPIQEAVTRALRAPAKRTDPLWAKRLKQEVSRSRVRIEAFIQQGSMTL 258

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            ++ TLK+GQ++P          L +  K +Y C LG++G +++IR+T+
Sbjct: 259 NELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIRVTN 307


>gi|116872088|ref|YP_848869.1| flagellar motor switch protein FliM [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740966|emb|CAK20086.1| flagellar motor switch protein FliM [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 330

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTIASAFTKKSMEFISQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      +I + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSNLEKFCEA 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L     +    SP + +               N+ +  +++++  E   S+  + +P  +
Sbjct: 167 LRDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +      +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                 +         K  + C +G+ G    ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|114794453|pdb|2HP7|A Chain A, Structure Of Flim Provides Insight Into Assembly Of The
           Switch Complex In The Bacterial Flagella Motor
          Length = 183

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 6/185 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +    +   + + L      ++   VD+   S     +   I S          +
Sbjct: 5   SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLTYEEFIRSVMIPSFIVIFT 63

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
              +  +       +L  T+L+ ++G   E  P   NR  + +E  + ++ +  +  +L 
Sbjct: 64  GDVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTEIETSIMRKEVTNMLTLLA 120

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           Q  S  Q   P++E+       +       NE V  +  +++     S   +  P   L 
Sbjct: 121 QAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFSLLE 178

Query: 208 KTTLI 212
                
Sbjct: 179 PLLEK 183


>gi|298346003|ref|YP_003718690.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           43063]
 gi|304390239|ref|ZP_07372193.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315654591|ref|ZP_07907497.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           51333]
 gi|315657504|ref|ZP_07910386.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236064|gb|ADI67196.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           43063]
 gi|304326721|gb|EFL93965.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491055|gb|EFU80674.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           51333]
 gi|315491976|gb|EFU81585.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 306

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/297 (7%), Positives = 81/297 (27%), Gaps = 6/297 (2%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
              +   +  +   +   +I       + +        ++ + +           +   I
Sbjct: 12  DARVYDFSKPMKLPREYARIMEMALEAFTRHWVNQLVGRLHVVITGEVGDLSMRSYDDYI 71

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            +     +          +   +       +  +++LLG + +      +R L+ VE  +
Sbjct: 72  KTLPNQTLMVIIDFQGGRNKGVLQFPRQTALAWVDHLLGGTGDV-ESTPDRELTEVEVSV 130

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
               + ++ A L+    +                 +       +  V    + +T     
Sbjct: 131 LIDFLKRVLADLDIAFQSMLPLDSQFRTIEYA--PQFVQVVDGSTPVLFAPITLTAGEHL 188

Query: 195 SSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
               +++P   +        +  +   + + ++  +          + + +  R   +  
Sbjct: 189 DDCSIMMPVSMITDAIHQGDVHDTRTEQQKAEAAAVRQHLVDTLEDVPIGVAVRFTPRNV 248

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             +++  L IG  +P +H       L      +     G  G      +      ++
Sbjct: 249 NPRELDGLAIGDTLPLIHPTSRPLDLVVGDLILAETAAGTSGSRLAAMVVSVNKGEK 305


>gi|300975540|ref|ZP_07173051.1| flagellar motor switch protein FliM [Escherichia coli MS 45-1]
 gi|301050694|ref|ZP_07197555.1| flagellar motor switch protein FliM [Escherichia coli MS 185-1]
 gi|300297617|gb|EFJ54002.1| flagellar motor switch protein FliM [Escherichia coli MS 185-1]
 gi|300410309|gb|EFJ93847.1| flagellar motor switch protein FliM [Escherichia coli MS 45-1]
          Length = 178

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 4/170 (2%)

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
            +       +                  +     N     N+ V     ++ I N+   F
Sbjct: 1   MLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEF 59

Query: 198 VLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            + +P   +     + ++   + S N+ ++  D   R+     + +          L  +
Sbjct: 60  NICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQI 119

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + LK G V+P         I   +G  + + + G +   Y +RI   IN 
Sbjct: 120 LKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 167


>gi|119503672|ref|ZP_01625755.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460734|gb|EAW41826.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
          Length = 323

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 101/295 (34%), Gaps = 10/295 (3%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSS--LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
                        G+  T+ K S    L   + + L  +          I   +    + 
Sbjct: 29  FDDGQFKSHDFGAGEALTLSKWSELDGLLRAHAEVLQGVLLRNFGQQATIEPFAPLFARV 88

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
             +I +  +        +        +    + +  L+    G S    P+L  + ++  
Sbjct: 89  GDLIPAMSDRIALITTEIKPLEGESHLEFPGDFLSFLVNQYFGGSTVASPKLAGK-VTPS 147

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           E++L+++    +   L +  S      P   D Y      + +   ++     +  ++  
Sbjct: 148 EQRLSEQLAKDVLRTLVEVWSDRLALEP--GDLYVDITTDRLSLLPADMGYVVLTYSVAC 205

Query: 191 E-NVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
             +    F L++P E+  L    L+    +        +          +++V +   ++
Sbjct: 206 GSDYQGEFRLLLPYESMALQAPRLMPARREEPEVVVEPEWEARLQSAVPEIDVELCGVVS 265

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           L +T+L++++  K+G VIP        A L   G+ I   + G    +  ++ITD
Sbjct: 266 LLETSLRNLLAFKVGTVIPIDEP--QTAQLMVEGRGIARGKYGAHDSSRAVQITD 318


>gi|90418398|ref|ZP_01226310.1| possible flagellar motor switch protein fliM [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338070|gb|EAS51721.1| possible flagellar motor switch protein fliM [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 348

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 98/302 (32%), Gaps = 3/302 (0%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +  RL      +         +   +               +D++    +S     +  
Sbjct: 48  DVGERLRNAAEFEPRRLPRLKHMAETWAASAATKISAIAGASLDLTLREVESDFGPELDE 107

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           +  +  +++  S   + S  +    +  +  L+  L  A             + +++ + 
Sbjct: 108 AEDDGTMYAPLSSPRFRSPGYAMLDHEALEALISALFAAEPSPPGTPPRTP-TDLDRSIV 166

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           K  +A I+           E   ++ +  +   L +       +       ++T+ ++++
Sbjct: 167 KLGLATIADSALSVFEMIGELRLSVGNIINAAELGE-QLAGETDRFILFRFDLTVASLST 225

Query: 196 SFVLIIPQETLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
           +    +P          +    +    ++ E   +       + ++ +   +  KK  L 
Sbjct: 226 TITFALPGALFAPHLRFLREPPKMPPPDREESWSNAIKESFAKSDLRLSAIVTKKKIDLG 285

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
            +    +G  IP      +   +    + ++   +GR   +Y +RI +RI+  ++ + + 
Sbjct: 286 TIAGFAVGDTIPLDVSANSLIAIECEDQPLFRAHMGRSRDSYVVRIEERIDPAEEFIDDI 345

Query: 315 LH 316
           L 
Sbjct: 346 LS 347


>gi|320107039|ref|YP_004182629.1| flagellar motor switch protein FliM [Terriglobus saanensis SP1PR4]
 gi|319925560|gb|ADV82635.1| flagellar motor switch protein FliM [Terriglobus saanensis SP1PR4]
          Length = 326

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 88/271 (32%), Gaps = 6/271 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
              +   ++   + + L       +      +  + +   FS  + +  E    +   L 
Sbjct: 28  EQLRALHNMQDQFARNLTHTLGAWLRTSFIANLVATEQKLFSGFLATVPEAAYVASLRLE 87

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
               +  +    NLV  +++ LLG S         R L+ +E+ +       I+   N  
Sbjct: 88  PLGVHGALLIDLNLVSPIVDLLLGGSGRAGEV---RDLTEIEEAILFSVSEMIAREFNVA 144

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
                      E       L++    +  E    +   + +     + V  IP  +L   
Sbjct: 145 WQA-SGIHFATEKREREGQLQRLMGYV--EKTLCMTYEVVMPEARGNLVFCIPAVSLSSI 201

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
               +S +++   +S +       +  Q   ++  +    +    +++ +++GQV+    
Sbjct: 202 LRKMISQRDRPRRRSSESRLRVEDRIVQSRFSVALQFPQMRLGAHEIMEMQVGQVVRLPL 261

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
              T A L       +     R G++   ++
Sbjct: 262 PRNTMAELRVGAVTAFRAHPVRAGEHRAAQV 292


>gi|319898628|ref|YP_004158721.1| flagellar motor switch protein FliM [Bartonella clarridgeiae 73]
 gi|319402592|emb|CBI76137.1| Flagellar motor switch protein FliM [Bartonella clarridgeiae 73]
          Length = 322

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 91/291 (31%), Gaps = 7/291 (2%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
            +L   +    G           +       L         L       S  + K   I 
Sbjct: 21  DVLTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLGNYTSLKFTTDVQSLDTLKADQIT 80

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            +     +    +   W  +        L+  + E   GAS   +     R  S  E   
Sbjct: 81  QAIGTEALLIYFNSDCWGDDVIFVLDATLIELVTEVFFGASEPIVTNRNGRPFSPTE--- 137

Query: 135 AKRTIAQISAVLNQCISTTQESS--PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            ++       +L   I           L         + N    +   + +  + +    
Sbjct: 138 -RKVGETFGKLLAYAIDGVFGVGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGE 196

Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
           V +   +++P+            + ++ ++           ++  +  V I+  I     
Sbjct: 197 VEAKVNILMPRSCHRPIQEAVTRALRSPAKRTDPLWAKRLKQEVSRSRVRIEAFIQQGSM 256

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           TL ++  LK+GQV+P     +    L +  K +Y C LG++G +++IR+T+
Sbjct: 257 TLNELSILKVGQVLPLPANAEKQIRLRSGNKSLYKCSLGKIGTSFSIRVTN 307


>gi|299822275|ref|ZP_07054161.1| flagellar motor switch protein FliM [Listeria grayi DSM 20601]
 gi|299815804|gb|EFI83042.1| flagellar motor switch protein FliM [Listeria grayi DSM 20601]
          Length = 330

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 90/273 (32%), Gaps = 6/273 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENFVF-SQAS 87
              +   +L   + K   +   +++ L +           F S  + +   +        
Sbjct: 49  EHLESLKTLSSAFAKKTIEYVSQRIRLPIHTEAMLADQVSFASEYVDTMPNDSYLFCIID 108

Query: 88  L-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         +      +I + E L G + +       R LS+ E+   K  +      L
Sbjct: 109 LGDPELGQVIVEYDLAFLIYIHECLTGGNAKRK-FSERRLLSSFEELALKSLVDLSCQAL 167

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            +   +     P L                SN+ +  IN+++  +   S+  + +P  ++
Sbjct: 168 QESFKSIHPIEPQLVAVET--NPALLRVTSSNDMMALINIDVKSDYWISTIRVGVPFFSV 225

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                   +    + ++S +  +   ++ +Q+  +   ++   K TL ++  L++G  + 
Sbjct: 226 EYIMEKLENVVEYTFDKSRNFDEEVEQEIHQVEKDAIIKVGDIKMTLAELDELEVGDCLL 285

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
                        + K  +   +G+ G    I+
Sbjct: 286 TETHVNQPLKGYLSNKWKFESYMGKSGTQKAIK 318


>gi|319405393|emb|CBI79012.1| Flagellar motor switch protein FliM [Bartonella sp. AR 15-3]
          Length = 322

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 92/288 (31%), Gaps = 3/288 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            L   +    G           +       L         L       S  + K + I  
Sbjct: 22  ALTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLGNYTSLKFTTDVQSLDTLKANQITQ 81

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           +     +    +   W  +        LV    E   GAS   +     R  S VE K+ 
Sbjct: 82  AIGTEALLIYFNSDHWGDDVIFVLDATLVELATEVFFGASEPMVTNRNGRPFSPVECKVG 141

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
                 ++  L+            L         + N    +   + +  + +    V +
Sbjct: 142 ATFGKLLAYALDGVFG--IGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGEVET 199

Query: 196 SFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              +++P+            + +  ++           ++  +  V+I+  I     TL 
Sbjct: 200 RVNILMPRSCHRPIQEAVTRALRTPAKRTDPLWAKRLKQEVSRSRVHIEAFIQQGSMTLN 259

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           ++ TLK+GQ++P          L +  K +Y C LG++G +++IR+T+
Sbjct: 260 ELSTLKVGQILPLPANAVKKIKLRSGNKSLYKCSLGKIGTSFSIRVTN 307


>gi|32490802|ref|NP_871056.1| hypothetical protein WGLp053 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166008|dbj|BAC24199.1| fliM [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 319

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 7/300 (2%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           N S +   +           K+I +  +++   +  ++ K     +   +DI+     + 
Sbjct: 17  NFSEISKNIFLNKNKSKECNKSIIEKLNNVNQKFTGYIKKEITNYIKEPIDITSKEIYTQ 76

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K+   I  F      +    + + ++  I  +   V  +L+   G +  +  +      S
Sbjct: 77  KYCDFIKDFNTLVSINLIKTNLFKNDLVIILTTEFVSIILDIFFGGTGNSFGRKNLNEFS 136

Query: 129 TVEKKLAKRTIAQISAVLNQCI-STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
             EK++       I     + +       +  L          +  N   NE +     N
Sbjct: 137 ISEKRIIDILNKLIINCYQKSLKDNINSINLELVTSDTCI---QLINFDKNEKIFISKFN 193

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRI 246
              +N+  +F +I    ++    L      + ++ + ++   +    +     + I  + 
Sbjct: 194 FHYKNLKINFFIIFSTFSVENENLFYEKKLSNNKEKEQNKWKNKLVNEIKSSKLLIQVKF 253

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 + D++ L  G++IP +  +K       +   ++S   G +  +Y +R+ + IN 
Sbjct: 254 ADLSICVSDLINLNKGEIIPIVKTKK--LTAYVDCIPVFSGSYGSLNGHYALRVENIINS 311


>gi|213615589|ref|ZP_03371415.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 190

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 16/163 (9%), Positives = 43/163 (26%), Gaps = 6/163 (3%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G +   +  P  P    R+       +   +    +   + +         +    DI+ 
Sbjct: 28  GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
            + +   +     +       +   L        +  S +LV   ++NL G       ++
Sbjct: 82  GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
             R  +  E+++  R +       +                  
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184


>gi|332187923|ref|ZP_08389656.1| surface presentation of antigens family protein [Sphingomonas sp.
           S17]
 gi|332012084|gb|EGI54156.1| surface presentation of antigens family protein [Sphingomonas sp.
           S17]
          Length = 328

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/285 (8%), Positives = 70/285 (24%), Gaps = 15/285 (5%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE------NFVFSQAS 87
               L     + L  +F+  +  ++          +F+       +          +   
Sbjct: 37  TMQHLSARLARSLRGLFESLLREELRCWAEPLVVQRFADYRAERGDGLSAWLPMTMTSIG 96

Query: 88  LSSW--SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
             +    +          +++L++   G +      L     S     +       ++  
Sbjct: 97  GPAIQADAKALCVVEGGFMLSLIDLFFGGAGRAPDTLPT-EFSPAVDAMIAHLGDMMATP 155

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204
           + Q   +      +                   + +      +   +   +   ++ P  
Sbjct: 156 MRQAWESLARIEFHPGAPE--SSPAMLAKMDGEDAMIVTRFGIAGQDRRPTMLDILYPVA 213

Query: 205 TLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
            L            +K             R    +   + + +     +L  ++ LK G 
Sbjct: 214 ALKPHGSALTGKVVDKQAEADPTWRGDLTRAVMTVRFPVRSVLAEPVVSLSRLMELKTGD 273

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           VIP     +    +   G  +    +G       +++T      +
Sbjct: 274 VIPISFGPEVP--VMVGGDLLGMGTVGTANGRAAVQLTSLARSAE 316


>gi|254973937|ref|ZP_05270409.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-66c26]
 gi|255091323|ref|ZP_05320801.1| putative flagellar motor switch protein [Clostridium difficile CIP
           107932]
 gi|255312981|ref|ZP_05354564.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-76w55]
 gi|255515740|ref|ZP_05383416.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-97b34]
 gi|255648834|ref|ZP_05395736.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-37x79]
 gi|260682051|ref|YP_003213336.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260685649|ref|YP_003216782.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
 gi|306518949|ref|ZP_07405296.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-32g58]
 gi|260208214|emb|CBA60573.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260211665|emb|CBE01935.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
          Length = 293

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 86/286 (30%), Gaps = 15/286 (5%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +      + L   + K        ++  +  +   S     +   +     + V  Q +
Sbjct: 16  SRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMIVDSIDQVNYQTFLDRVTSSCVVVQNA 75

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     NF      ++    ++   G +     +  +R L+ ++KK+    +  +   ++
Sbjct: 76  MEPVMKNFSFRIDRSVADMWIDITSGGTGVI--KDNDRELTELDKKVLLHLMDDLVRNMH 133

Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204
             +     Q         +    L           V  +++ +        S  L  P  
Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNEYIGSVSLCFPYN 186

Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
            L              N   + SE+           + +++   I      ++D++ L++
Sbjct: 187 GLEALLESISVIEFFDNDVGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           G VI    +      +     + Y+   G +     ++I D +  +
Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292


>gi|91792691|ref|YP_562342.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
 gi|91714693|gb|ABE54619.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
          Length = 181

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 3/159 (1%)

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                     +                 E V   + ++ ++     F + +P   +    
Sbjct: 4   KPDGSIYVEFDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIR 63

Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  +  Q+  ++           +   + V  D  I   + TL+DV+ L+ G +IP   
Sbjct: 64  ELLDAGVQSDKQDTDMRWSQALRDEIMDVQVGFDANIVEHELTLRDVMGLRAGDIIPIEL 123

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                 ++       Y C++G+   +  ++I+++I   +
Sbjct: 124 P--EHIMMRIEDLPTYRCKMGKSRDHLALKISEKIARPE 160


>gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016]
 gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 396

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/376 (10%), Positives = 106/376 (28%), Gaps = 68/376 (18%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G    +NTSP    + +            + +   +G +            ++  V+I
Sbjct: 19  LNGGQEDENTSPSEAAIESE--DGSELSDVEKDLLGEIGNISMGSASTALSTIINQQVNI 76

Query: 61  SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +           +   F+           +       +         +   ++G   +  
Sbjct: 77  TTPVVTLTTLRKLKDEFEIPNVALEVKYTAGIIGENLLVMKVTDAYVIANLMMGGEGKIE 136

Query: 120 PQLY--NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
            ++       ++   +   + I   +  +          SP + + +D      +     
Sbjct: 137 GEVKELGEIETSAVSEAMNQMIGSAATSMATMFMREINISPPVSNIWDDATEPLSQEISE 196

Query: 178 NEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISL---------------------- 214
           +E +  ++ ++ I   V S+ + + P  T  K   I +                      
Sbjct: 197 DETIIKVSFSLKIGELVDSNIMQLFPVNTAKKIIAIMMGKEEEEKEEEKVEDSKPAAPVK 256

Query: 215 ---------SSQNKSENQSEDLIDPFARKTY----------------------------- 236
                    S Q ++E  S     P                                   
Sbjct: 257 TENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNIDL 316

Query: 237 --QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +   K ++KD++ L  G ++      +    +  NGK++   E+  + +
Sbjct: 317 ILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVIDE 376

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RI   I+ + + 
Sbjct: 377 NFGVRIKSIISSEDRI 392


>gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555]
 gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555]
          Length = 392

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/376 (10%), Positives = 106/376 (28%), Gaps = 68/376 (18%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G    +NTSP    + +            + +   +G +            ++  V+I
Sbjct: 15  LNGGQEDENTSPSEAAIESE--DGSELSDVEKDLLGEIGNISMGSASTALSTIINQQVNI 72

Query: 61  SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +           +   F+           +       +         +   ++G   +  
Sbjct: 73  TTPVVTLTTLRKLKDEFEIPNVALEVKYTAGIIGENLLVMKVTDAYVIANLMMGGEGKIE 132

Query: 120 PQLY--NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
            ++       ++   +   + I   +  +          SP + + +D      +     
Sbjct: 133 GEVKELGEIETSAVSEAMNQMIGSAATSMATMFMREINISPPVSNIWDDATEPLSQEISE 192

Query: 178 NEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISL---------------------- 214
           +E +  ++ ++ I   V S+ + + P  T  K   I +                      
Sbjct: 193 DETIIKVSFSLKIGELVDSNIMQLFPVNTAKKIIAIMMGKEEEEKEEEKVEDSKPAAPVK 252

Query: 215 ---------SSQNKSENQSEDLIDPFARKTY----------------------------- 236
                    S Q ++E  S     P                                   
Sbjct: 253 TENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNIDL 312

Query: 237 --QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +   K ++KD++ L  G ++      +    +  NGK++   E+  + +
Sbjct: 313 ILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVIDE 372

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RI   I+ + + 
Sbjct: 373 NFGVRIKSIISSEDRI 388


>gi|126697842|ref|YP_001086739.1| putative flagellar motor switch protein [Clostridium difficile 630]
 gi|115249279|emb|CAJ67092.1| Flagellar motor switch protein FliM [Clostridium difficile]
          Length = 293

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 86/286 (30%), Gaps = 15/286 (5%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +      + L   + K        ++  +  +   S     +   +     + V  Q +
Sbjct: 16  SRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMVVDSIDQVNYQTFLDRVTSSCVVVQNA 75

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     NF      ++    ++   G +     +  +R L+ ++KK+    +  +   ++
Sbjct: 76  MEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKVLLHLMDDLVRNMH 133

Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204
             +     Q         +    L           V  +++ +        S  L  P  
Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNECIGSVSLCFPYN 186

Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
            L              N   + SE+           + +++   I      ++D++ L++
Sbjct: 187 GLEALLESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           G VI    +      +     + Y+   G +     ++I D +  +
Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292


>gi|255099440|ref|ZP_05328417.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-63q42]
          Length = 293

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 86/286 (30%), Gaps = 15/286 (5%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +      + L   + K        ++  +  +   S     +   +     + V  Q +
Sbjct: 16  SRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMVVDSIDQVNYQTFLDRVTSSCVVVQNA 75

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     NF      ++    ++   G +     +  +R L+ ++KK+    +  +   ++
Sbjct: 76  MEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKVLLHLMDDLVRNMH 133

Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204
             +     Q         +    L           V  +++ +        S  L  P  
Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNEYIGSVSLCFPYN 186

Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
            L              N   + SE+           + +++   I      ++D++ L++
Sbjct: 187 GLEALLESISVIEFFDNDIGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           G VI    +      +     + Y+   G +     ++I D +  +
Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292


>gi|255305298|ref|ZP_05349470.1| putative flagellar motor switch protein [Clostridium difficile ATCC
           43255]
          Length = 293

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 87/286 (30%), Gaps = 15/286 (5%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +      + L   + K        ++  + ++   S     +   +     + V  Q +
Sbjct: 16  SRENLTCLNFLLAEFCKKYKNYIIYELKCNSNMVVDSIDQVNYQTFLDRVTSSCVVVQNA 75

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     NF      ++    ++   G +     +  +R L+ ++KK+    +  +   ++
Sbjct: 76  MEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKVLLHLMDDLVRNMH 133

Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204
             +     Q         +    L           V  +++ +        S  L  P  
Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNECIGSVSLCFPYN 186

Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
            L              N   + SE+           + +++   I      ++D++ L++
Sbjct: 187 GLEALLESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           G VI    +      +     + Y+   G +     ++I D +  +
Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292


>gi|103488406|ref|YP_617967.1| surface presentation of antigens (SPOA) protein [Sphingopyxis
           alaskensis RB2256]
 gi|98978483|gb|ABF54634.1| surface presentation of antigens (SPOA) protein [Sphingopyxis
           alaskensis RB2256]
          Length = 312

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 75/273 (27%), Gaps = 9/273 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
               S+   + + L  + +      V +  +  +   F+    +     +F +       
Sbjct: 40  PALESVANQFARSLRDLVRALGAPGVQVERSGAEQLSFAEWSGA-AAPAIFWRYHAPPLK 98

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               I  +  L++ L++   G   +   +     L+  E + A R    I   +      
Sbjct: 99  GPLLIAAARPLLLQLVDIFYGGRGQLGGERE--ELTDAEDRFAARLGRDIGMQIAAAWRD 156

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI-IPQETLLKT-T 210
                P L+         K     +++ +      +    +    +    P   L     
Sbjct: 157 KLVIEPELD--CVTGDPAKLAAVRADDELFVQRFTLRGAPLDGRTIACAYPVAALRGIAG 214

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
              L                  +    + + + + +   + +L  ++ L++G +IP    
Sbjct: 215 DELLPDMQGGNGGDPAWTGALDKALRGVRLPVRSVLARPEISLVKLLALEVGDIIPLSMP 274

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                     G+      +G    N  I I   
Sbjct: 275 RHVPVT--VAGRSFAFGSIGEANGNAAILIDHI 305


>gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
           str. 1873]
 gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
           str. 1873]
          Length = 394

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/367 (11%), Positives = 107/367 (29%), Gaps = 64/367 (17%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
             +S  +N   +     +    +         +   +G +            +   V+I+
Sbjct: 29  SDESTEENVKDVENAQES---SEDKITDIEMDLLGEIGNISMGSASTALSTIIGNVVNIT 85

Query: 62  YTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
                S     + ++F+           S       +         +   ++G       
Sbjct: 86  TPQVSSTTLEKLRNTFEVPNIALEVKYTSGIVGGNLLVMKIPDAAVIANLMMGGDGRIEE 145

Query: 121 QLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
           +     L+ +E+        + I   +  +    S     SP +   +    +       
Sbjct: 146 KS---ELTEIEESAVSEAMNQMIGSAATSMATMFSREVNISPPVYKIWKDTSMPLCETIK 202

Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFA- 232
            N+ +  ++  +TI + V S+ + I P +T  K   I +    + ++  QS +       
Sbjct: 203 ENDDIIKVSFKLTIGDLVDSNIMQIFPIKTAKKIVSIMMGQEEKGEAVEQSSNKTQQINK 262

Query: 233 -------------------------------------------------RKTYQLNVNID 243
                                                                 + + I 
Sbjct: 263 MQNQETSSNSQVEPKPVETYTKSQPQVNIQKASFAPLQESNINGAPQNIDLILDVPLEIS 322

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   K ++KD++ L  G +I      +    +  NGK+I   E+  V +N+ +RI + 
Sbjct: 323 VVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDENFGVRIVNI 382

Query: 304 INFDQKS 310
           ++ +++ 
Sbjct: 383 VSGEERV 389


>gi|114706761|ref|ZP_01439661.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506]
 gi|114537709|gb|EAU40833.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506]
          Length = 321

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 109/318 (34%), Gaps = 14/318 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
            T+P    +  RL      + +     +++     + L           V +++   + G
Sbjct: 7   GTAPSD--IGKRLKSASELEPSKLHRLAAIVEETAEELTLALNRLSIDKVAVTFRDFEMG 64

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           + +  I    ++ +F+  +   +    ++     L    +    GA  +   +   R+L+
Sbjct: 65  QGADGIGDAGDDVLFATLTSKRFGRPAYLAAPETLADVCISAYFGA--KPAERAGKRALT 122

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +++ L K T            +   E+      F + + L +     +     ++   +
Sbjct: 123 DLDRALVKTTFKTFVETFASAFAPIDEAGLAAGGFVECEELDELLGGPNAGRYVSMTFGL 182

Query: 189 -TIENVA--------SSFVLIIPQETL-LKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
               + +        S+  L +P   L L   ++S        +  E   +   R   + 
Sbjct: 183 SKAGDRSATAEEEPLSTLTLALPSSYLSLHRRVLSEPLPLPQPSPDETWSEAMVRNFEKS 242

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            ++++  +  K+  L +V   ++GQ +           L   GK I+  ++G    +Y  
Sbjct: 243 GLHLEAVLARKQVPLAEVAHFRVGQTLALDVMVSELITLECEGKPIFKSQVGFSRGSYVA 302

Query: 299 RITDRINFDQKSLKNFLH 316
           R  + ++  Q+ +   L 
Sbjct: 303 RFEEAVDPTQEFINGILS 320


>gi|91792689|ref|YP_562340.1| flagellar motor switch protein FliM [Shewanella denitrificans
           OS217]
 gi|91714691|gb|ABE54617.1| flagellar motor switch protein FliM [Shewanella denitrificans
           OS217]
          Length = 190

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 40/143 (27%), Gaps = 6/143 (4%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + L       M    ++S    Q  KF  
Sbjct: 35  YDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQMLKFGE 88

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
            +H+       +    S       I     LV  L++N  G       ++  R  +  E+
Sbjct: 89  YVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFTPTER 148

Query: 133 KLAKRTIAQISAVLNQCISTTQE 155
           ++ +  +  I     +  +   +
Sbjct: 149 RIVQLLLKIIFEDYKEAWAPVMD 171


>gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|973195|gb|AAB00544.1| FliY [Treponema pallidum]
 gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 348

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/332 (10%), Positives = 96/332 (28%), Gaps = 44/332 (13%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
           P   A  +G  G      ++  S             +      V IS    +        
Sbjct: 26  PAAGASFSGG-GLSSAQSELLQSFCQANVGSFCPSLESLTGKTVSISPPRVEISSKEEFS 84

Query: 75  HSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
               +  V +       ++ +     +      L+  +   SHE   Q+ +  LS V + 
Sbjct: 85  RVIPDMLVATVIDFEGEFAGDHLFLMAPEFAQKLVNLV---SHEDNDQIDDMGLSVVSET 141

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
           + +   AQ+S +        +          +   + K   R   + +      + ++  
Sbjct: 142 ITQYVSAQLSTL------EARNVQNVSVAPAESVQVPKAMVRFPPQRLCVFTYTVELDGT 195

Query: 194 ASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARK------------------ 234
           + +   ++ ++ +++       + Q          +     +                  
Sbjct: 196 SYTLWELVSEQLMVRIIERMGGAMQRPQAQVGNSQMGGVNMQMGIGAASPSVQSVQFHPL 255

Query: 235 --------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            + + +   +   +  +KD++ +  G +I           +  N
Sbjct: 256 QNAAGGAEQGNIGLIMDVFMEVTVELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVN 315

Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            K I   E+  + +N+ +R+T+ ++  ++   
Sbjct: 316 HKLIAKGEVVVIDENFGVRVTEILSPGERIAD 347


>gi|255521671|ref|ZP_05388908.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J1-175]
          Length = 213

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 74/204 (36%), Gaps = 3/204 (1%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I      +I + E L G + +       R LS  E+   K  + +    L     +   
Sbjct: 1   MIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEALKDSFKSVHP 59

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
            SP + +               N+ +  +++++  E   S+  + +P  ++ +      +
Sbjct: 60  ISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLEN 117

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
               + ++  +      ++ +Q+      R+   KTT K++  L++G V+      +   
Sbjct: 118 VVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRDTL 177

Query: 276 ILSANGKEIYSCELGRVGKNYTIR 299
                 K  + C +G+ G    ++
Sbjct: 178 KGYVTEKWKFECYMGKSGNQKAVK 201


>gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP]
          Length = 366

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 102/351 (29%), Gaps = 56/351 (15%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
             LL ++            +   +G +            +   VDIS    +      + 
Sbjct: 13  DALLKQVVQDEELSDIEISMVGEVGNIILGAGATALSNILGRKVDISTPEVEVMTLRELR 72

Query: 75  HSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEK 132
                  V               +     L   L + ++G   +    +L    LS V +
Sbjct: 73  KGISGEKVCVTIHFEGEVEGLNALVLEKQLAAELADIMMGGLGKPESDELDEFKLSAVGE 132

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDF--YDIDYLKKNTNRLSNEFVTTINMNMTI 190
               + +   +  L+  I      +P   +   +D + +K       N+ V      MTI
Sbjct: 133 A-MNQMMGSAATSLSDMIKKPVSITPPTTEILNFDDESVKFPPIGDENDKVAKATFTMTI 191

Query: 191 ENV-ASSFVLIIPQE-------------TLLKTTLISLSSQNKSENQSE----------- 225
           E +  + F L +P               T+ +    + +      + S+           
Sbjct: 192 EGLQPAKFFLAMPISFVKKLYELIFGTPTVEQKQASAPAPGTDQTSASKPTSFVPPTPKR 251

Query: 226 -----------------------DLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTL 259
                                  +       +      + +N+   +   K  LK+++ L
Sbjct: 252 EEKQAVAARPVQFEDFGRTQQPSEKPQILDERLQLLFDVPLNVTVELGRTKLALKEIMEL 311

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G +I           +  N K I   E+  + +N+ +RIT+ +N  ++ 
Sbjct: 312 GVGSLIELDKLTGEPVDIYVNNKLIARGEVVVIDENFGVRITEIVNPKERL 362


>gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
 gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
          Length = 385

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/333 (9%), Positives = 94/333 (28%), Gaps = 52/333 (15%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  VDI+           + + F              
Sbjct: 51  KDALGEIGNISFGSSATALSALLNQKVDITTPFVSLVYKEELTNEFPNPHVAVQVQYTEG 110

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +S    +   +     + + +LG + E   ++ +    +  ++   + +   +  ++   
Sbjct: 111 FSGTNLLVIKHEDAAVISDLMLGGTGENPTEIMDEIKLSAVQEAMNQMMGSAATSMSTVF 170

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
               + SP   D  +I   +       ++    ++ N+ +   + S+ + ++        
Sbjct: 171 QKKIDISPPSLDILNIQKGEGTELIPQDDVFVKVSFNLKVGTLIDSNIMQLLSISFAKSL 230

Query: 210 TLISLSSQNKSENQSEDLIDPFARK----------------------------------- 234
               L    +    S +       K                                   
Sbjct: 231 VEELLVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPVHVPVDVQPASFSEF 290

Query: 235 ---------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                             + + +   +   K T+++++ L  G +I           +  
Sbjct: 291 EHMSSPQGNSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILI 350

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           N K I   E+  + +N+ +R+TD I+   +  K
Sbjct: 351 NSKLIAKGEVVVIDENFGVRVTDIISQKDRINK 383


>gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
           degensii KC4]
 gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
           degensii KC4]
          Length = 360

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 90/315 (28%), Gaps = 36/315 (11%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SL 88
             +     +G +          E +   V I+    Q      ++ SF   ++       
Sbjct: 39  EEKDALGEIGNIAMGAAATALSEILGRRVTITSPHVQVTTKEELLKSFTVPYLIVSVPYT 98

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +         + + ++G   +  P L    +S V +    + +   +  L  
Sbjct: 99  EGLEGLSLLVVKVEDASVIADLMMGGEGKRSPTLGEIEISAVAEA-MNQMMGAAATSLAD 157

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLL 207
               T   +P     +  +      +    + +  I+  MTIE++  +  + ++   T  
Sbjct: 158 IYHRTVGIAPPQVRIFSKEGEAATNDLGVEDPIAVISFRMTIEDLLDTEIMRVLSVSTAK 217

Query: 208 KTTLISLSSQNKSENQSED--------------------------------LIDPFARKT 235
           +   +        E + E                                          
Sbjct: 218 EEASLLWQGVYGEEEKREKPYSEKPSPAEEAAATAAPAVTPSSPAPPPLDVDRSRL-ELI 276

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + + +   +   +  +K+++ L  G ++           +  NG  +   E+  V +N
Sbjct: 277 LDIPLKVSVVLGRTRRPIKEILGLGPGSILELDALADEPVEILVNGVLVARGEVVVVEEN 336

Query: 296 YTIRITDRINFDQKS 310
           + +RIT  +   ++ 
Sbjct: 337 FGVRITSIVTPQERL 351


>gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
           8271]
          Length = 373

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 115/355 (32%), Gaps = 55/355 (15%)

Query: 10  TSPLHPILLARLT--GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           + P   +    +T                 +  +          + +   V+I+      
Sbjct: 16  SGPADDMEQEEITQKFLEEISSLERDALGEIANISMGTAATTLSQLVGRKVEITTPKVDI 75

Query: 68  GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNR 125
                ++  +     + + +     + +  +  S +    +++ ++G S ++   +L + 
Sbjct: 76  TTPREVLDEYPVPYVLIAVSYKKGITGSNMLILSRSDGSIIVDLMMGGSGQSPYEELTDL 135

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTT 183
            +S + +    + +   +  ++   S+T + +P   +      +     T+   NE V  
Sbjct: 136 QVSGISEA-MNQMMGSAATSMSTMFSSTVDITPPNVIITKEGEEDAFLQTDIDPNEPVVK 194

Query: 184 INMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA---------- 232
           I+  M IE V  S+ + +IP       T   L++Q + ++  E   +             
Sbjct: 195 ISFKMNIEGVLDSTLLQVIPLSVAKNMTERLLNNQPEPQSGPEARQEREYHSEPPLSPPP 254

Query: 233 -------------------------------------RKTYQLNVNIDTRINLKKTTLKD 255
                                                   + + + +   +     T+KD
Sbjct: 255 DIFWQQQSSMSSQSTPVQPAQFSQLVTGNHPAIPNNLDLIFDVPLQVSVELGKANKTIKD 314

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           ++ L  G V+           +  NGK I  CE+  + + + IRIT+ IN  Q+ 
Sbjct: 315 ILELGPGSVVELDRIAGEPVDMIVNGKLIAKCEVVVINETFGIRITEIINQAQRM 369


>gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
 gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
          Length = 385

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/333 (9%), Positives = 93/333 (27%), Gaps = 52/333 (15%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  VDI+           +   F              
Sbjct: 51  KDALGEIGNISFGSSATALSALLNQKVDITTPFVSLVYKEELTDEFPNPHVAVQVQYTEG 110

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +S    +   +     + + +LG + E   ++ +    +  ++   + +   +  ++   
Sbjct: 111 FSGTNLLVIKHEDAAVISDLMLGGTGENPTEIMDEIKLSAVQEAMNQMMGSAATSMSTVF 170

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
               + SP   D  +I   +       ++    ++ N+ +   + S+ + ++        
Sbjct: 171 QKKIDISPPSLDILNIQKGEGTELIPQDDVFVKVSFNLKVGTLIDSNIMQLLSISFAKSL 230

Query: 210 TLISLSSQNKSENQSEDLIDPFARK----------------------------------- 234
               L    +    S +       K                                   
Sbjct: 231 VEELLVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPGHVSVDVQSASFAEF 290

Query: 235 ---------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                             + + +   +   K T+++++ L  G +I           +  
Sbjct: 291 EHVSSPQGDSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILI 350

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           N K I   E+  + +N+ +R+TD I+   +  K
Sbjct: 351 NSKLIAKGEVVVIDENFGVRVTDIISQRDRINK 383


>gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7]
 gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7]
          Length = 360

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 100/334 (29%), Gaps = 52/334 (15%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T   I   +G +          + ++  V I+     + KF  II +     V +   
Sbjct: 31  DQTQVDIIGEIGNISMSQAATTLSDILNHRVTITTPVVSTLKFQEIIDASVTPKVVTTIE 90

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQI 142
                  +  +  +    I + + ++           N+  + +E         + +   
Sbjct: 91  FKKGLEGSNLLMMNERDAIIIADLMMDGDG----NPENKEFTELELSAVGEAMNQMMGSA 146

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
           +  +   +    +  P   + +             +  V  I   MT+ + + S  + + 
Sbjct: 147 ATAMATMLERIVDILPPDVEVWKDQNNVTYDRISGDTMVCKIAFQMTVGDFIESEIMQVF 206

Query: 202 PQETLL---------------------------KTTLISLSSQNKSENQSEDLIDPFARK 234
             +T+                                 +     ++  +       F   
Sbjct: 207 TLDTVRNISKIVLADEGEVIQDRQLPQAEEMTAPIAPAANQPTQETAGKIGIQKPEFQEL 266

Query: 235 --------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            + +     +   K T+KD+++L  G V+           +  N
Sbjct: 267 THAGSLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVN 326

Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           GK I   E+  + +++ IRIT+ ++ +Q+ +K+ 
Sbjct: 327 GKLIAEGEVVVINESFGIRITNILSKEQR-IKHL 359


>gi|213612309|ref|ZP_03370135.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 147

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 3/144 (2%)

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SEN 222
            ++     N     N+ V     ++ I N+   F + +P   +     + ++   + S +
Sbjct: 2   SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRH 61

Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
           + ++  D   R+     + +          L  ++ LK G V+P         I   +G 
Sbjct: 62  EDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGV 119

Query: 283 EIYSCELGRVGKNYTIRITDRINF 306
            + + + G V   Y +R+   IN 
Sbjct: 120 PVLTSQYGTVNGQYALRVEHLINP 143


>gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
           Rt17-B1]
          Length = 357

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 104/342 (30%), Gaps = 47/342 (13%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
             LL +LT +       + +   +G +            +   VDIS    +      + 
Sbjct: 13  DALLGQLTSEESLTDIEKDMIGEVGNIILGSGATALSSILGRKVDISTPEVEVKTLKDLR 72

Query: 75  HSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEK 132
                  V               +         + + ++G   +    +L    LS V +
Sbjct: 73  SEVSGEKVTVIIHFEGAVEGLNALVLEKKTAAEIADIMMGGLGKVESDELDEMKLSAVGE 132

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK--KNTNRLSNEFVTTINMNMTI 190
               + +   +  L+  I  +   +P   +  + D  +          + V  +N  M+I
Sbjct: 133 A-MNQMMGSAATSLSDMIKKSVNITPPTIEILNFDNAETKFPPIGEDADKVAKVNFTMSI 191

Query: 191 ENVA-SSFVLIIPQETLLKTTLISLSSQNKSENQSE------------------------ 225
           E++  + F L +P   + K   +      K    S+                        
Sbjct: 192 EDLEPAKFFLAMPIPFVKKMYEMIFGKTEKQTATSQTQKTPTQSVPSPSIPKEKTAVAAK 251

Query: 226 --------------DLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
                         +       +      + +N+   +   K +LK+++ L +G +I   
Sbjct: 252 PVQFEDFGKVPSAQEQTQVIDERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIELD 311

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                   +  N K I   E+  + +N+ +RIT+ ++  ++ 
Sbjct: 312 KLTGEPVDIYVNNKLIARGEVVVIDENFGVRITEIVSPKERL 353


>gi|221639608|ref|YP_002525870.1| Surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides KD131]
 gi|221160389|gb|ACM01369.1| Surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides KD131]
          Length = 331

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 11/290 (3%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +L R           +   +  G      L +  ++   L +D+    C     + ++ 
Sbjct: 17  SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 74

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
             ++   ++            I  +  L+  L+E          P    R  S  +  + 
Sbjct: 75  MPEDLSFYAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 132

Query: 136 KRTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191
           +  I +  A L+  +     +  +        +D  +     L +    V    +++ + 
Sbjct: 133 QDFIDRALAELDLLLIEDEDRVWAGGFRYASFLDDPRPLGLLLEDCPYRVLVAEVDLALG 192

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                 +L +P +   +  L     Q+++     D     A +   ++  ++  +     
Sbjct: 193 AKTGQLLLAVPADG--RGELPHHGGQDEAPPPLSDFGAAMAEQVMAVDCRLEAVLGRITL 250

Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            L  V+  + G  +P           +  +G  +    LG+      +R+
Sbjct: 251 PLAHVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 300


>gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT]
 gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain
           [Clostridium novyi NT]
          Length = 396

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/370 (11%), Positives = 106/370 (28%), Gaps = 64/370 (17%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
             +   +N S +          +     T   +   +G +            +   V+I+
Sbjct: 25  TQEQSQENVSNVSDETKVDEKKESPITDTERDLLGEIGNISMGSASTALSTIIASAVNIT 84

Query: 62  YTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
               +      +  +F+           S       +         +   ++G   +   
Sbjct: 85  TPQVRVTTLKELRDTFEVPNIALEVKYTSGIIGGNLLVMKIPDAAVIANLMMGGDGKIEE 144

Query: 121 QLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
           +     L+ +E+        + I   +  +          SP +   +    L  + +  
Sbjct: 145 KS---ELTEIEESAVSEAMNQMIGSAATSMATMFGREVNISPPISKIWKDAALPLSESIS 201

Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP---FA 232
             E +  ++  +TI + V S+ + I+P +T  K   I +  + +    +  + +      
Sbjct: 202 EEEDIIEVSFKLTIGDLVDSNIMQILPIKTAKKIVSIMMGEEEEDMQLNPKVEERPVNIK 261

Query: 233 RKTYQLN----------------------------------------------------V 240
               +                                                      +
Sbjct: 262 SDLNKAPQQIDPKPAETYTQPQNSVPQSQVSVQRANFAPLDQNPISGVPQNIDLILDVPL 321

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            I   +   K ++K+V+ L  G +I      +    +  NGK+I   E+  V +N+ +RI
Sbjct: 322 EISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDENFGVRI 381

Query: 301 TDRINFDQKS 310
              ++ +++ 
Sbjct: 382 VSIVSGEERV 391


>gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str.
           Langeland]
 gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
           Langeland]
 gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
           230613]
          Length = 386

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +            ++  V+I+           + +SF+           S 
Sbjct: 45  KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
                 +    +    +   ++G +     ++  + LS +E         + I   +  +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
               +     SP L   +             +E V  ++ ++ I   V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222

Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
             K   I +  ++                         ++  Q      P  R+      
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMIYEKPIEREAPKVEV 282

Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + + I   +   K  +KD++ L  G +I      
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
 gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657]
 gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
 gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str.
           657]
          Length = 386

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +            ++  V+I+           + +SF+           S 
Sbjct: 45  KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
                 +    +    +   ++G +     ++  + LS +E         + I   +  +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
               +     SP L   +             +E V  ++ ++ I   V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222

Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
             K   I +  ++                         ++  Q      P  R+      
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSTQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEV 282

Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + + I   +   K  +KD++ L  G +I      
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 386

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +            ++  V+I+           + +SF+           S 
Sbjct: 45  KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
                 +    +    +   ++G +     ++  + LS +E         + I   +  +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
               +     SP L   +             +E V  ++ ++ I   V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222

Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
             K   I +  ++                         ++  Q      P  R+      
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEV 282

Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + + I   +   K  +KD++ L  G +I      
Sbjct: 283 KQASFEPLSIRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
           2916]
 gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
           2916]
          Length = 386

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +            ++  V+I+           + +SF+           S 
Sbjct: 45  KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
                 +    +    +   ++G +     ++  + LS +E         + I   +  +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
               +     SP L   +             +E V  ++ ++ I   V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222

Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
             K   I +  ++                         ++  Q      P  R+      
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEV 282

Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + + I   +   K  +KD++ L  G +I      
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
           15579]
 gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
           15579]
          Length = 390

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 108/368 (29%), Gaps = 65/368 (17%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
           G    +         L  L      +K    +   +G +            ++  V+I+ 
Sbjct: 23  GSQEEEEKKEATDTELPELPDLTDLEK---DLLGEVGNISMGSASTALSTIINQQVNITT 79

Query: 63  TSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
                     +  SF+           S       +    +    +   ++G +     +
Sbjct: 80  PVVSVTTLERLKDSFEIPNIALEVKYTSGIVGENLLVMKIDDAAVISNLMMGGNGIVEGE 139

Query: 122 LYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           +  + LS +E         + I   +  +    +     SP L   +             
Sbjct: 140 I--KELSEIEISAVSEAMNQMIGSAATSMATMFAREVNISPPLSKIWSDLTAPLAEGISD 197

Query: 178 NEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQN------------------ 218
           +E V  ++ ++ I   V S+ + ++P +T  K   I +  ++                  
Sbjct: 198 DEPVVLVSFSLNIGELVDSNIMQLLPMKTAKKIVAIMMGEESMDEPSVENNSTPAPIVEE 257

Query: 219 -------KSENQSEDLIDPFARK-----------------------------TYQLNVNI 242
                  ++  Q      P  R+                                + + I
Sbjct: 258 KKSAKAVEAPKQEIVYEKPIEREAPKVEVKQASFEPLSVRESATTMPNNIDLILDVPLQI 317

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +   K  +KD++ L  G +I      +    +  NGK++   E+  V +N+ +RIT+
Sbjct: 318 SVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDENFGVRITN 377

Query: 303 RINFDQKS 310
            ++  ++ 
Sbjct: 378 IVSSQERI 385


>gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall]
 gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           Hall]
 gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
           Kyoto]
          Length = 386

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/339 (12%), Positives = 100/339 (29%), Gaps = 62/339 (18%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +            ++  V+I+           + +SF+           S 
Sbjct: 45  KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
                 +    +    +   ++G +     ++  + LS +E         + I   +  +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP--- 202
               +     SP L   +             +E V  ++ ++ I   V SS + ++P   
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222

Query: 203 -----------QETLLKTTLISLSSQNKSENQSED-----------LIDPFARK------ 234
                      +     +   + S  +  E +                 P  R+      
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPTKAVEAPKQEIVYEKPIEREAPKVEI 282

Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + + I   +   K  +KD++ L  G +I      
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402
           065]
          Length = 386

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +            ++  V+I+           + +SF+           S 
Sbjct: 45  KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
                 +    +    +   ++G +     ++  + LS +E         + I   +  +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEV--KELSEIEISAVSEAMNQMIGSAATSM 162

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
               +     SP L   +             +E V  ++ ++ I   V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222

Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
             K   I +  ++                         ++  Q      P  R+      
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSTQASTVEEKKPAKVVEAPKQEMVYEKPIEREAPKVEV 282

Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + + I   +   K  +KD++ L  G +I      
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra]
 gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str.
           Okra]
          Length = 386

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +            ++  V+I+           + +SF+           S 
Sbjct: 45  KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
                 +    +    +   ++G +     ++  + LS +E         + I   +  +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
               +     SP L   +             +E V  ++ ++ I   V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222

Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
             K   I +  ++                         ++  Q      P  R+      
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSTQASTVEEKKPAKAVEAPKQEIVYEKPIEREAPKVEV 282

Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + + I   +   K  +KD++ L  G +I      
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|229544405|ref|ZP_04433463.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           coagulans 36D1]
 gi|229324890|gb|EEN90567.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           coagulans 36D1]
          Length = 368

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/361 (7%), Positives = 101/361 (27%), Gaps = 54/361 (14%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G +  ++ S    + +      +            +G +            +   V+I
Sbjct: 11  LNGTANLEDASAKDSLRVEDYLDSMERDA-----LGEIGNISFGSSATALSTLLSQKVEI 65

Query: 61  SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +       +   +   F              +S    +    +    + + +LG + E  
Sbjct: 66  TTPEVSIVRHDKLADEFPHPYVAIQVKYTEGFSGVNVLVIKQSDAAIIADLMLGGTGENP 125

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
               +    +  ++   + +   +  ++   +   + SP      +I   +        +
Sbjct: 126 SSELDEIHLSAVQEAMNQMMGSAATSMSTVFNKRIDISPPAVSLLNILEGEGTDKLPDQD 185

Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLL--------KTTLISLSSQNKSENQSEDLIDP 230
            +  ++  + I + + S  + ++P                      + + +   +++   
Sbjct: 186 LLVKVSFRIMIGSLIDSQIMQLLPLSFAKKLARDLIHPEQPAEAEKKAEEKQPDQNMRGH 245

Query: 231 FARK---------------------------------------TYQLNVNIDTRINLKKT 251
            A K                                          + + +   +     
Sbjct: 246 AAEKPAEPAQNAAKQEMYQNVQPAVFTSFEETAPRVETKNLDMLLDIPLEVTVELGRTSK 305

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           T+++++ +  G ++           +  N + I   E+  + +N+ +R+TD ++   +  
Sbjct: 306 TVREILEMGAGSIVELDKLAGEPVDILINHQLIAIGEVVVIDENFGVRVTDIVSQKDRLK 365

Query: 312 K 312
           K
Sbjct: 366 K 366


>gi|207109404|ref|ZP_03243566.1| flagellar motor switch protein FliM [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 193

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 2/162 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+  P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 28  KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 87

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG       Q  NR  
Sbjct: 88  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 145

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169
           S +E  L    + Q+  +L +  S   E  P ++       +
Sbjct: 146 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV 187


>gi|332558593|ref|ZP_08412915.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides WS8N]
 gi|332276305|gb|EGJ21620.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides WS8N]
          Length = 323

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 11/290 (3%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +L R           +   +  G      L +  ++   L +D+    C     + ++ 
Sbjct: 9   SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 66

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
             ++    +            I  +  L+  L+E          P    R  S  +  + 
Sbjct: 67  MPEDLSFHAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 124

Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191
           +  I +  A L+  +   ++   +        +D  +     L +    V    + + + 
Sbjct: 125 QDFIDRALAELDLLLLEDEDRVWASGFRYASFLDDPRPLGLLLEDCSYRVLVAEVELALG 184

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
             +   +L +P +   +       SQ+++     D     A +   ++  ++  +     
Sbjct: 185 AKSGQLLLAVPADG--RGERPHDGSQDEAPPPLTDFGAALAEQVMAVDCRLEAVLGRITL 242

Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            L  V+  + G  +P           +  +G  +    LG+      +R+
Sbjct: 243 PLAQVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 292


>gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
 gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
          Length = 352

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 105/323 (32%), Gaps = 39/323 (12%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           +++    I   +G +            +DL V I+       KF  I++      V +  
Sbjct: 26  EEQVKVDIIGEVGNISMSQAATTLSSILDLRVSITTPRVSKIKFGEILNDLVAPKVATTV 85

Query: 87  SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                   +  +       I + + ++G + E     +     +   +   + I   S  
Sbjct: 86  EFKEGLLGSNLMLLEVKDAIVIADLMMGGTGEPTNTQFTELELSAVAEAMNQMIGTASTS 145

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQE 204
           +   IS   +  P +   ++     + +   + E +  I+ ++ +E  + S  + I    
Sbjct: 146 MATMISRKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIESKIMQIFTDP 205

Query: 205 TLLKTTLISLS---------------------------SQNKSENQSEDLIDPFA----- 232
            +       LS                           + +K    S+      A     
Sbjct: 206 VVNDIASAMLSDEATVVTRETPTPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVN 265

Query: 233 -----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
                     + +++   +   K T+KD+++   G VI           +  NGK I + 
Sbjct: 266 DGDNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATG 325

Query: 288 ELGRVGKNYTIRITDRINFDQKS 310
           E+  + +N+ +RIT+ ++  Q+ 
Sbjct: 326 EVVVINENFGVRITNILSQKQRI 348


>gi|77463738|ref|YP_353242.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
 gi|77388156|gb|ABA79341.1| possible flagellar switch protein FliM [Rhodobacter sphaeroides
           2.4.1]
          Length = 323

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 11/290 (3%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +L R           +   +  G      L +  ++   L +D+    C     + ++ 
Sbjct: 9   SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 66

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
             ++    +            I  +  L+  L+E          P    R  S  +  + 
Sbjct: 67  MPEDLSFHAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 124

Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191
           +  I +  A L+  +   ++   +        +D  +     L +    V    + + + 
Sbjct: 125 QDFIDRALAELDLLLLEDEDRVWASGFRYASFLDDPRPLGLLLEDCSYRVLVAEVELALG 184

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
             +   +L +P +   +       SQ+++     D     A +   ++  ++  +     
Sbjct: 185 AKSGQLLLAVPADG--RGERPHDGSQDEAPPPLTDFGAALAEQVMAVDCRLEAVLGRITL 242

Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            L  V+  + G  +P           +  +G  +    LG+      +R+
Sbjct: 243 PLAQVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 292


>gi|146277515|ref|YP_001167674.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555756|gb|ABP70369.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 311

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 97/294 (32%), Gaps = 12/294 (4%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   +L R           +   +         L +  ++   L +D++  +      + 
Sbjct: 1   MTDGVLRRKIEAKARPVVAQAAGAERALRLS--LARAARDAFALALDVAGLASARRSLAE 58

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           ++   +E  +++            +  S  ++  L+E          P   +R  +  + 
Sbjct: 59  LLEMPEERSLYAIVE-GPGEGLGLVALSPPVLSALIEVQTIGRVSAQP-PASRKPTRTDA 116

Query: 133 KLAKRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNM 188
            +    I Q  A L   ++  ++   +        +D  +     L +    V T+N+++
Sbjct: 117 AMVSGFIDQTLAELEVLLAEDEDRIWAGGFRYASFLDDPRPLGLLLEDCAYRVLTVNVDL 176

Query: 189 TIENVASSFVLIIPQET-LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            +   + S +L +P E        +   +  ++     D     A +       +D  + 
Sbjct: 177 ALGAKSGSLLLALPAEGRGEP--PLRPEAPEETGTPGSDFGLALAEQVMGAECLLDAVLA 234

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRI 300
                L  V+  ++G V+            ++ +G+++    LG+      IR+
Sbjct: 235 RVTLPLGTVMGWQVGDVVDLSKATLEDVAFVALDGRQVAEGRLGQHRGMRAIRL 288


>gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
 gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
          Length = 379

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/336 (9%), Positives = 99/336 (29%), Gaps = 58/336 (17%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
                +G +            ++  VDI+  S      S I   F              +
Sbjct: 40  DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGF 99

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
           S +  +    +    + + ++G   +           +  ++   + +   +  ++   S
Sbjct: 100 SGSNLLVVEQSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 159

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210
              + SP   +  D++  K      ++E +  ++  + +   + S+ + + P        
Sbjct: 160 KKIDISPPRVELLDVNEEKGTDRIPADEMLVKVSFRLKVGELIDSNIMQLYPITFAKDLI 219

Query: 211 LISLSSQNKSENQSEDLID--------------PFARK----------------TYQLNV 240
              +++ + +E+  ++  +                  +                     V
Sbjct: 220 SDLMNTGSSNEDIQQEEPEETYEAPEEAVMPEPRLESQPQPTPKRQGKPKKAAPVQVAPV 279

Query: 241 N--------------------------IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                                      I   +   K ++K+++ L  G +I         
Sbjct: 280 EFSAFDPNEAPQAHLNNLDMLMDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEP 339

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  N + +   E+  + +N+ +R+TD ++  ++ 
Sbjct: 340 VDILVNQRIVAKGEVVVIEENFGVRVTDILSQAERI 375


>gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
           ATCC 12755]
          Length = 352

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 106/325 (32%), Gaps = 43/325 (13%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           +++    I   +G +            +D  V I+       KF  I++      V +  
Sbjct: 26  EEQVKVDIIGEVGNISMSQAATTLSSILDRRVSITTPRVSKIKFGEILNDLVAPKVATTV 85

Query: 87  SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                   +  +       I + + ++G + ET    +     +   +   + I   S  
Sbjct: 86  EFKEGLLGSNLMLLEVKDAIVIADLMMGGTGETSNTQFTELELSAVAEAMNQMIGTASTS 145

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII---- 201
           +   IS   +  P +   ++     + +   + E +  I+ ++ +E +  S ++ I    
Sbjct: 146 MATMISRKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIKSKIMQIFTDP 205

Query: 202 ------------------------------------PQETLLKTTLISLSSQNKSENQSE 225
                                               P  T     +   + Q  + +   
Sbjct: 206 VVNDIASAMLSDEATVVTRETPTPQPTAPVAAPTPEPAATSKPVEVSKPAFQTLASSGVS 265

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
           D  D        + +++   +   K T+KD+++   G VI           +  NGK I 
Sbjct: 266 D-GDNL-DLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIA 323

Query: 286 SCELGRVGKNYTIRITDRINFDQKS 310
           + E+  + +N+ +RIT+ ++  Q+ 
Sbjct: 324 TGEVVVINENFGVRITNILSQKQRI 348


>gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208]
 gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens LL3]
          Length = 377

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/336 (8%), Positives = 92/336 (27%), Gaps = 58/336 (17%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
                +G +            ++  VDI+  S      S I   F              +
Sbjct: 38  DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGF 97

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
             +  +    +    + + ++G   +           +  ++   + +   +  ++   S
Sbjct: 98  DGSNLLVVEQSDAAIIADLMIGGDGQGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 157

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT- 209
              + SP   +  D+   K       ++ +  ++  + +   + SS + + P        
Sbjct: 158 KKIDISPPRVELLDVTEEKGTDRIPEDDLLVKVSFRLKVGELIDSSIMQLYPITFAKDLI 217

Query: 210 -------------------------------------TLISLSSQNKSENQSEDLIDPFA 232
                                                       Q  ++  +   + P  
Sbjct: 218 AELMDTDQPEADETVSEPRETYETPQPEPAIQQEPQAKPELPKRQGTAKKAAPVQVAPVE 277

Query: 233 ------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                                  + +++   +   K ++K+++ L  G +I         
Sbjct: 278 FQAFDQNAADGHGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEP 337

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  N + +   E+  + +N+ +R+TD ++   + 
Sbjct: 338 VDILVNQRIVAKGEVVVIEENFGVRVTDILSQADRL 373


>gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42]
 gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42]
          Length = 378

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/337 (8%), Positives = 91/337 (27%), Gaps = 59/337 (17%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
                +G +            ++  VDI+  S      S I   F              +
Sbjct: 38  DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGF 97

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
             +  +    +    + + ++G               +  ++   + +   +  ++   S
Sbjct: 98  DGSNLLVVEQSDAAIIADLMIGGDGRGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 157

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT- 209
              + SP   +  D+   K       ++ +  ++  + +   + SS + + P        
Sbjct: 158 KKIDISPPRVELLDVMEEKGTDRIPEDDLLVKVSFRLKVGELIDSSIMQLYPITFAKDLI 217

Query: 210 ---------------------------------------TLISLSSQNKSENQSEDLIDP 230
                                                         Q  ++  +   + P
Sbjct: 218 ADLMTADQHESEAAETVSEPQETYETPQPEPAMQPEPQAKPELPKRQGTAKKAAPVQVAP 277

Query: 231 FA-----------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
                                   + +++   +   K ++K+++ L  G +I        
Sbjct: 278 VEFQAFDHNEAAQGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGE 337

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              +  N + +   E+  + +N+ +R+TD ++   + 
Sbjct: 338 PVDILVNQRIVAKGEVVVIEENFGVRVTDILSQADRL 374


>gi|126462567|ref|YP_001043681.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104231|gb|ABN76909.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 323

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 90/290 (31%), Gaps = 11/290 (3%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +L R           +   +  G      L +  ++   L +D+    C     + ++ 
Sbjct: 9   SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 66

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
             ++    +            I  +  L+  L+E          P    R  S  +  + 
Sbjct: 67  MPEDLSFHAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 124

Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191
           +  I +  A L+  +   ++   +        +D  +     L +    V    + + + 
Sbjct: 125 QDFIDRALAELDLLLLEDEDRVWASGFRYASFLDDPRPLGLLLEDCSYRVLVAEVELALG 184

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
             +   +L +P +   +       SQ++++    D     A +   ++  ++  +     
Sbjct: 185 AKSGQLLLAVPADG--RGERPHDGSQDEAQPPLTDFAAALAEQVMAVDCRLEAVLGRITL 242

Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            L  V+  + G  +P           +  +G  +    LG+      +R+
Sbjct: 243 PLAHVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 292


>gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
 gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
          Length = 346

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 103/314 (32%), Gaps = 33/314 (10%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
             + +   +G +            +  D+ I+  + +  K  ++   F    V      +
Sbjct: 28  EEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYI 87

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  +  LV  + + ++G S E   +  +    +   +   + +   +  L++
Sbjct: 88  EGLEGLNVLVLNKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQMMGSAATSLSE 147

Query: 149 CISTTQESSPNLEDFYDIDYLK-KNTNRL--SNEFVTTINMNMTIENVA-SSFVLIIPQE 204
            +  T   SP   +  + D    +         + V  +   + IE +  S F  +I  +
Sbjct: 148 LLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEIEIEGLPKSKFYQVISAD 207

Query: 205 TLLKTTLISLSSQNKSEN----------------------------QSEDLIDPFARKTY 236
            + K        Q++++                             +  ++         
Sbjct: 208 LVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLL 267

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + + +   +   + TLK V+ +  G +I           +  NGK I   E+  + +N+
Sbjct: 268 DIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENF 327

Query: 297 TIRITDRINFDQKS 310
            +RIT+ ++  ++ 
Sbjct: 328 GVRITEIVSPKERL 341


>gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga sp. RQ2]
 gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga sp. RQ2]
          Length = 346

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 101/314 (32%), Gaps = 33/314 (10%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
             + +   +G +            +  D+ I+  + +  K  ++   F    V       
Sbjct: 28  EEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYT 87

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +     LV  + + ++G S E   +  +    +   +   + +   +  L++
Sbjct: 88  EGLEGLNVLVLDKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQMMGSAATSLSE 147

Query: 149 CISTTQESSPNLEDFYDIDYLK-KNTNRL--SNEFVTTINMNMTIENVA-SSFVLIIPQE 204
            +  T   SP   +  + D    +         + V  +   M IE +  S F  +I  +
Sbjct: 148 LLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEMEIEGLPKSKFYQVISAD 207

Query: 205 TLLKTTLISLSSQNKSEN----------------------------QSEDLIDPFARKTY 236
            + K        Q++++                             +  ++         
Sbjct: 208 LVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLL 267

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + + +   +   + TLK V+ +  G +I           +  NGK I   E+  + +N+
Sbjct: 268 DIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENF 327

Query: 297 TIRITDRINFDQKS 310
            +RIT+ ++  ++ 
Sbjct: 328 GVRITEIVSPKERL 341


>gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
 gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
          Length = 370

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/333 (11%), Positives = 99/333 (29%), Gaps = 54/333 (16%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90
           + +   +G +          + ++  V+I+    +      I   F+   +      +S 
Sbjct: 34  KDLLGEIGNISMGSASTALYQLINKQVNITTPKVKVTTLKEIKDGFEYPNIILDVEYVSG 93

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            +    +         +   ++G   +      +    +  ++   + I   +  +    
Sbjct: 94  ITGRNILIMQTTDAAVIANLMMGGDGQVNTSELSEIEVSAVQEAMNQMIGSAATSMATMF 153

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKT 209
           +     SP     +       +     +E +  +  ++TIE +  S+ + I+P  T  K 
Sbjct: 154 AREVNISPPKSKIWKDMNENISETIPEDEPIVEVCFDLTIEGLLQSNMMQILPINTAKKI 213

Query: 210 TLISLSSQNKSEN--------------------------QSEDLIDPFARK--------- 234
             I +    +  N                            E  +     K         
Sbjct: 214 VSIMMGEDQEVANEIDDSYDSSDIYKEEYNIEEKPIINTVEERAVKNIVEKPVEVHGATF 273

Query: 235 -----------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
                               + + +   +   K ++KD++ L  G +I      +    +
Sbjct: 274 EPLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEPVEV 333

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             NGK+I   E+  V +N+ +RIT  ++   + 
Sbjct: 334 LINGKKIAYGEVVVVDENFGVRITSIVSGADRI 366


>gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation
           [Thermoanaerobacter tengcongensis MB4]
          Length = 366

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 94/354 (26%), Gaps = 49/354 (13%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             +  + L   L      K       + I   +G +            +   V I+    
Sbjct: 9   SQEEINALLKGLQEETQEKKELTDEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKV 68

Query: 66  QSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
               +  +   F   +V  Q            +       + + + ++G   +       
Sbjct: 69  SVLSWDQLKEEFNIPYVGVQVEYTEGLKGYNLLILKKEDALKITDLMMGGDGKVEEGEIT 128

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
               +   +   + I   +  L+  ++     SP      D               V  +
Sbjct: 129 DLHLSAVGEAMNQMIGSAATSLSTLLNKKINISPPKAFIVDFSTALPEDVAFPQGDVVRV 188

Query: 185 NMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQNK-----------SENQSEDLIDPFA 232
              M + ++  S  + +IP +   +     L                 +    +  +  A
Sbjct: 189 AFKMEVGDIIDSEIMQLIPFDFAKELVKSVLQQATTSTSPPAEVKEMKKESKGESEEKMA 248

Query: 233 RK------------------------------------TYQLNVNIDTRINLKKTTLKDV 256
            +                                       + + I   +   K  +KD+
Sbjct: 249 SEKAIKKEEKVNVSPVIFQNFDEEPQQEAKGESKNLDLILDVPLTITVELGKTKKLIKDI 308

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + L  G +I           + ANGK I   E+  + +N+ +RITD ++  ++ 
Sbjct: 309 LELTEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHPGKRI 362


>gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
           str. Eklund]
 gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
           str. Eklund]
          Length = 388

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 101/344 (29%), Gaps = 66/344 (19%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASL 88
           T + +   +G +            +   V+I+     +     + ++F+           
Sbjct: 43  TEKDLLGEIGNISMGSASTALSTIIGSAVNITTPQVSTTTLKELRNTFEVPNIALEVKYT 102

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISA 144
           S       +         +   ++G       +     L+ +E+        + I   + 
Sbjct: 103 SGIVGGNLLVMKIPDAAVIANLMMGGDGRIEEKS---ELTEIEESAVSEAMNQMIGSAAT 159

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQ 203
            +          SP +   +       +      E +  ++  +TI + V S+ + I+P 
Sbjct: 160 SMATMFGREVNISPPVSKIWRDTSKPLSETISEEEEIVEVSFKLTIGDLVDSNIMQILPI 219

Query: 204 ETLLKTTLISLSS------------QNKSENQSEDLIDPFARK----------------- 234
           +T  K   I +              Q     Q ++  +   +                  
Sbjct: 220 KTAKKIVSIMMGEEEKQEVPQSNIHQQGEREQVQNSQEQLNKNVVPKPVETYSQPQVSSP 279

Query: 235 ----------------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                                          + + I   +   K ++K+V+ L  G +I 
Sbjct: 280 QPQVNIQKATFAPLGESPINGAPQNIDLILDVPLEISVVLGKTKKSIKEVLELGTGSLIE 339

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +    +  NGK+I   E+  V +N+ +RI + ++ +++ 
Sbjct: 340 LDKLAEEPVEIYVNGKKIAYGEVVVVDENFGVRIMNIVSGEERV 383


>gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 366

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 95/354 (26%), Gaps = 49/354 (13%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             +  + L   L      K       + I   +G +            +   V I+    
Sbjct: 9   SQEEINALLKGLQEETQEKKELTDEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKV 68

Query: 66  QSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
               +  +   F   +V  Q            +       + + + ++G   +       
Sbjct: 69  SVLSWDQLKEEFNIPYVGVQVEYTEGLKGYNLLILKKEDALKITDLMMGGDGKVEEGEIT 128

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
               +   +   + I   +  L+  ++     SP      D               V  +
Sbjct: 129 DLHLSAVGEAMNQMIGSAATSLSTLLNKKINISPPKAFIVDFSTALPEDVAFPQGDVVRV 188

Query: 185 NMNMTIENVA-SSFVLIIPQETLLKTTLISLSS-----------QNKSENQSEDLIDPFA 232
              M + ++  S  + +IP +   +     L             +   +    +  +  A
Sbjct: 189 AFKMEVGDIIDSEIMQLIPFDFAKELVKSVLQQTTTSTSPPAEVKEMKKESKGESEEKMA 248

Query: 233 RK------------------------------------TYQLNVNIDTRINLKKTTLKDV 256
            +                                       + + I   +   K  +KD+
Sbjct: 249 SEKAIKKEEKVNVSPVIFQNFDEEPQQEAKGESKNLDLILDVPLTITVELGKTKKLIKDI 308

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + L  G +I           + ANGK I   E+  + +N+ +RITD ++  ++ 
Sbjct: 309 LELTEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHPGKRI 362


>gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10]
 gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga naphthophila RKU-10]
          Length = 346

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 101/314 (32%), Gaps = 33/314 (10%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
             + +   +G +            +  D+ I+  + +  K  ++   F    V       
Sbjct: 28  EEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYT 87

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +     LV  + + ++G S E   +  +    +   +   + +   +  L++
Sbjct: 88  EGLEGLNVLVLDKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQMMGSAATSLSE 147

Query: 149 CISTTQESSPNLEDFYDIDYLK-KNTNRL--SNEFVTTINMNMTIENVA-SSFVLIIPQE 204
            +  T   SP   +  + D    +         + V  +   M IE +  S F  +I  +
Sbjct: 148 LLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEMEIEGLPKSKFYQVISAD 207

Query: 205 TLLKTTLISLSSQNKSEN----------------------------QSEDLIDPFARKTY 236
            + K        Q++++                             +  ++         
Sbjct: 208 LVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLL 267

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + + +   +   + TLK V+ +  G +I           +  NGK I   E+  + +N+
Sbjct: 268 DIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENF 327

Query: 297 TIRITDRINFDQKS 310
            +RIT+ ++  ++ 
Sbjct: 328 GVRITEIVSPKERL 341


>gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
 gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
 gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
 gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
 gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
 gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
          Length = 352

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 105/323 (32%), Gaps = 39/323 (12%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           +++    I   +G +            +D  V I+       KF  I++      V +  
Sbjct: 26  EEQVKVDIIGEVGNISMSQAATTLSSILDRRVSITTPRVSKIKFGEILNDLVAPKVATTV 85

Query: 87  SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                   +  +       I + + ++G + ET    +     +   +   + I   S  
Sbjct: 86  EFKEGLLGSNLMLLEVKDAIVIADLMMGGTGETSNTQFTELELSAVAEAMNQMIGTASTS 145

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQE 204
           +   IS   +  P +   ++     + +   + E +  I+ ++ +E  + S  + I    
Sbjct: 146 MATMISRKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIESKIMQIFTDP 205

Query: 205 TLLKTTLISLS---------------------------SQNKSENQSEDLIDPFA----- 232
            +       LS                           + +K    S+      A     
Sbjct: 206 VVNDIASAMLSDEATVVTRETPTPQPTAPVAAPTPEPAAASKPVEVSKPAFQTLASSGVS 265

Query: 233 -----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
                     + +++   +   K T+KD+++   G VI           +  NGK I + 
Sbjct: 266 DGDNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATG 325

Query: 288 ELGRVGKNYTIRITDRINFDQKS 310
           E+  + +N+ +RIT+ ++  Q+ 
Sbjct: 326 EVVVINENFGVRITNILSQKQRI 348


>gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
           mobilis SJ95]
 gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
           mobilis SJ95]
          Length = 372

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 109/346 (31%), Gaps = 52/346 (15%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
            P      +        +  +   +  +            +   ++I Y      KF +I
Sbjct: 26  DPKESEETSTVDEKLDALLDMIGEIANITMGSGATTLSTLLRRKIEIQYPQTDIIKFKNI 85

Query: 74  IHSFK-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           I +F+ EN V +            +    NL   + + +LG   + +  +  R L  +  
Sbjct: 86  ITNFEGENVVVTVEYKKGLYGLNTLVLPLNLTNIIADLMLG---KDLENIEERELDDISL 142

Query: 133 KL----AKRTIAQISAVLNQCISTTQESSPNLEDF--YDIDYLKKNTNRLSNE-FVTTIN 185
                   + +   S  L+  + T  + SP       +    ++        E +V +I 
Sbjct: 143 SAVSEAMNQMMGTASTALSDFLKTNIDISPPSSRVVNFSEANIEFPPIETDKEAYVISIK 202

Query: 186 MNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK---------- 234
            N+ I  +  ++F   IP +   K   +   +  K+    E   +   +K          
Sbjct: 203 FNVKINGIAETTFWQFIPMKFAQKIRELVEKTFGKTTEDEESSKNSNTQKRSNSNVIKEK 262

Query: 235 ------------------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                                            + + +   +   K  L++++ L  G +
Sbjct: 263 KVKVQPVEFGEFEKKEEPISPNIDLSKLELLLDVPLELKVELGSTKLNLREILELHEGSM 322

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           I           + ANG+ I   E+  + +N+ IR+T+ ++  ++ 
Sbjct: 323 IQLNKLAGEPLDIYANGRLIARGEVVVIDENFGIRVTEIVSLRERM 368


>gi|973194|gb|AAB00543.1| FliM' [Treponema pallidum]
          Length = 155

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDP 230
               +E V  + +   +          IP  T+              +   + +   +  
Sbjct: 1   IVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGV 60

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCEL 289
              K   +++++   +   + +++D++ L++G +I           +LS   ++ + C+ 
Sbjct: 61  LRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQP 120

Query: 290 GRVGKNYTIRITDRINF 306
           G VGK    +I +RI  
Sbjct: 121 GVVGKKIAAQILERIES 137


>gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase
           [Carnobacterium sp. 17-4]
 gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase
           [Carnobacterium sp. 17-4]
          Length = 359

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/333 (12%), Positives = 99/333 (29%), Gaps = 51/333 (15%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T   I   +G +            +   V I+       KF  II +     V +   
Sbjct: 31  DQTQTDIIGEIGNISMSQAATTLSSILSRRVTITTPVVSCLKFQEIIDASVTPKVVTTIE 90

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQI 142
                + +  +  +    I + + ++            +  + +E         + +   
Sbjct: 91  FKKGLAGSNLLMMNEKDAIIIADLMMDGDGNA----EGKEFTELELSAVGEAMNQMMGSA 146

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
           +  +   +    +  P   + +             +  V  I   MT+++ + S  + I 
Sbjct: 147 ATAMATMLERIVDILPPEVEVWKNQEQVNYDRISGDTTVCKIAFQMTVDDLIESEIMQIF 206

Query: 202 PQETLLKT--------------------------TLISLSSQNKSENQSEDLIDPFARK- 234
             ET+                                   + + ++ +       F    
Sbjct: 207 TLETVRNISNIVLADEGEVITDRELPKAEEMTAPIEAVSQATSNADGKIGIQKPEFQELT 266

Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                           + +     +   K T+KD+++L  G V+           +  NG
Sbjct: 267 HAGSLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNG 326

Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           K I   E+  + +++ IRIT+ ++ +Q+ +K+ 
Sbjct: 327 KLIAEGEVVVINESFGIRITNILSKEQR-IKHL 358


>gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella
           australiensis 50-1 BON]
 gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella
           australiensis 50-1 BON]
          Length = 366

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 93/357 (26%), Gaps = 62/357 (17%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +RGQ     +S     +L  +          +     +G +            +   V I
Sbjct: 14  LRGQQSPSQSS--DDAILTDI---------EKDALGEIGNISMGTAATTLSTLLRNKVVI 62

Query: 61  SYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +         + +   +   FV               +      V  + + ++G     I
Sbjct: 63  TTPRVDITTMNELGKEYPIPFVAVEVKYTQGLEGVNLLILKEEDVKLITDLMMGGDGSNI 122

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
               +    +   +   + +   +  L+         SP      +           SNE
Sbjct: 123 ADEISDLHLSAIGEAMNQMVGSSATSLSTMFDKNINISPPKAFVINFTDESPYDAFDSNE 182

Query: 180 FVTTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF------- 231
            +  I  +M I  +  S  + ++P +   +     L    K+ +                
Sbjct: 183 PLVRIAFSMEIGTLLKSEMMQLLPIDFAKELVNNLLGGAAKAPDNEPLQKQEVTQMPPIE 242

Query: 232 ------------------------------------------ARKTYQLNVNIDTRINLK 249
                                                           + + +   +   
Sbjct: 243 SEKPEIKQAVVNKTESEKVVKAQPVVFQQLNNEAPEVLQGSNMNLIMDIPLQVTVELGRT 302

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           K T+KD++ L  G VI           +  NGK +   E+  + +N+ +RI + I+ 
Sbjct: 303 KKTVKDILELGTGSVIELDRLAGEPIDILVNGKLVARGEVIVIDENFGVRIIEMIDQ 359


>gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 354

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 99/340 (29%), Gaps = 56/340 (16%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q      SP+   +L+ L               ++      FL    + K   D++    
Sbjct: 33  QKEVPGMSPVDRDILSDLLASCFQVA--GNTLGAVLSRSSAFLNPNVETKTRKDIESELK 90

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S     +S +  S               +    +  S    + +  +++G          
Sbjct: 91  SGSFLLYSTLSGSV--------------NGRVVLAMSAENAVKISNSMMGG-------FD 129

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVT 182
           +  L   + +  + ++  +   L   IST      N       +        L + E + 
Sbjct: 130 SGELDEAQMQTLRDSLTPVMGALISQISTKTGGGVNGSPSETRNVTSPAALVLPDGETLI 189

Query: 183 TINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS--------------------QNKSE 221
            +  N+TIEN+ S     ++   T      +   S                       S 
Sbjct: 190 RVFFNLTIENIPSFRVQFLLSLSTASDLLNLYRRSGSAGGDMSGMGMGGMGGMGMAPGSM 249

Query: 222 NQSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +                          + +++   +   K  +KD++ L  G +I     
Sbjct: 250 SVKSVAFPNLGTASGASNTPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKL 309

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                 L  NGK I   E+  + +N+ +R+TD ++   + 
Sbjct: 310 AGEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPIDRI 349


>gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Bacillus pumilus
           ATCC 7061]
 gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Bacillus pumilus
           ATCC 7061]
          Length = 374

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/339 (8%), Positives = 98/339 (28%), Gaps = 56/339 (16%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
               +     +G +            ++  V+I+  +    + S +   F          
Sbjct: 32  SAMEQDAIGEIGNISFGSSATALSTLLNQKVEITTPTVTVIQKSMLNEEFPHPYVAIEVN 91

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
               +S++  +         + + ++G          +    +  ++   + +   +  +
Sbjct: 92  YTEGFSASNLLVVQQTDAAVIADLMMGGDGTNADPSLSEIHLSAVQEAMNQMMGSAATSM 151

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII----- 201
           +   +   + SP   +  D+   +      + E +  ++  + I  +  S ++ +     
Sbjct: 152 STVFNKKIDISPPRVELLDVKEGEGTDRIPAAEMLVKVSFRLKIGELIDSNIMQLYPITF 211

Query: 202 ----------PQETLLKTTLISLSSQNKSENQSEDLIDPFARK----------------- 234
                     P +         +S+    +   +    P  +                  
Sbjct: 212 AKDLIAELTDPAQEEEPVQDTQVSTPEPQQAAPQTQSAPAQQAAPPKRQAKPKPAAPVNV 271

Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + ++I   +   + ++K+V+ L  G +I      
Sbjct: 272 APVEFEAFSEPQHTTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLA 331

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  N + +   E+  + +N+ +R+TD ++  ++ 
Sbjct: 332 GEPVDILVNKRIVAKGEVVVIDENFGVRVTDILSQSERL 370


>gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sibiricum 255-15]
 gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sibiricum 255-15]
          Length = 376

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/334 (9%), Positives = 94/334 (28%), Gaps = 55/334 (16%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
                 +G +            ++  V+I+    +      +   +              
Sbjct: 40  IDALGEVGNISLGNSATALSALLNQKVEITTPHVRMITMEELRSRYPIPHVALRVGYTEG 99

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQC 149
           +     +  +      +   ++G        L    ++ +  ++   + +   +  ++  
Sbjct: 100 FKGENVLILTQRDASVIANLMMGGDGVVDESLEMEPIALSAVQEAMNQMMGAAATSMSTV 159

Query: 150 ISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL--------- 199
            S   + SP  +E F          +    E +  I  ++ I  +  S ++         
Sbjct: 160 FSMRIDISPPAVEIFDFSQEKTIVDSFSLWESMVIIEFDLKIGTLIDSKIVQLAPLDFSK 219

Query: 200 ------------------IIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR-------- 233
                             I P  +         + Q + E + E   +            
Sbjct: 220 QLIQKLFSASTTTTESAPIAPTSSQEPVREQPTAPQQQPEPRYEAPPEQKKEPVGVSPVQ 279

Query: 234 -----------------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                              Y + +N+   +   + +++D++ L  G +I           
Sbjct: 280 FGQFSEVQQEGPPGNIGMLYDVPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVD 339

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  N   I + E+  + +N+ +RIT+ +N  ++ 
Sbjct: 340 VFVNNTLIATGEVVVIEENFGVRITEIVNTKERL 373


>gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 356

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 95/339 (28%), Gaps = 58/339 (17%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            N SP+   +++ + G             ++     +F+    +     D+     S   
Sbjct: 36  DNLSPIDRDIISDVIGSAFQVA--GNTLGTILAKNTRFMNPATESSSSADIQKELGSKSV 93

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             FS I  S               +    +  +      +   ++G             L
Sbjct: 94  SLFSTISGS--------------LAGRVCLVMAQENAAKIAGVMMGG------MTPPGQL 133

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINM 186
              + +  K ++A I   +   I      + +               +L ++  +   ++
Sbjct: 134 DNAQLQTLKDSLAPILGTVTAQIGMKLGGTMSGNPPEIALVNSGRDLQLPDDSSLVKTSL 193

Query: 187 NMTIENVAS-SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA------------- 232
           ++ I+ V S     +I          I      K + QS  +                  
Sbjct: 194 SLNIDGVGSFKVYYVIALSMANSILDIQKGGGQKPQQQSGGMNVNMQPNMGMGGGQGSVG 253

Query: 233 ---------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + + +   +   K  +KD++ L  G +I      
Sbjct: 254 IKGVNFPSLATAGGGPGQTNLNLLMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLA 313

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                L  NGK I   E+  + +N+ +R+TD ++   + 
Sbjct: 314 GEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPTDRL 352


>gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
           4359]
 gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
           4359]
          Length = 344

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/328 (12%), Positives = 106/328 (32%), Gaps = 35/328 (10%)

Query: 18  LARLTGKLGD---KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
           + +L G   +       + +   +G +            +  +V+I+    +  K  ++ 
Sbjct: 12  IDKLLGGEAEGVLTPEEKDMIGEIGNIAMGSAATTLSMILGRNVNITVPMVREEKMKNVK 71

Query: 75  HSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
             F    V               +    +LV  +++ ++G S E   +  +    +   +
Sbjct: 72  SDFNGEKVVVTVEYTEGLKGLNVLVLEKSLVAAIVDLMMGGSGEVESEELDEIKLSAIGE 131

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF---VTTINMNMTI 190
              + +   +  L++ +  T   SP   +  + D        + ++    V  +   + I
Sbjct: 132 AMNQMMGSAATSLSELLGITVNISPPKVEILNFDDPSTKFPPVVDDPEKDVAVVEFEIEI 191

Query: 191 ENVA-SSFVLIIPQETLLKT---------------------------TLISLSSQNKSEN 222
           E +  S F  +I  + + K                              +  S    S  
Sbjct: 192 EGLPKSKFYQVIGADLVKKMYEYFTRAHKEEAEEKKEEKKEEKKVKVEPVEFSELKPSGT 251

Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
              ++          + + +   +   + TLK V+ +  G +I           +  NGK
Sbjct: 252 AKTEIPQDKLELLLDVPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGK 311

Query: 283 EIYSCELGRVGKNYTIRITDRINFDQKS 310
            I   E+  + +N+ +R+T+ ++  ++ 
Sbjct: 312 LIARGEVVVIDENFGVRVTEIVSPKERL 339


>gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032]
 gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032]
          Length = 374

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/339 (8%), Positives = 98/339 (28%), Gaps = 56/339 (16%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
               +     +G +            ++  V+I+  +    + S +   F          
Sbjct: 32  SAMEQDAIGEIGNISFGSSATALSTLLNQKVEITTPTVTVIQKSMLNEEFPHPYVAIEVN 91

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
               +S++  +         + + ++G          +    +  ++   + +   +  +
Sbjct: 92  YTEGFSASNLLVVQQTDAAVIADLMMGGDGTNADPSLSEIHLSAVQEAMNQMMGSAATSM 151

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII----- 201
           +   +   + SP   +  D+   +      + E +  ++  + I  +  S ++ +     
Sbjct: 152 STVFNKKIDISPPRVELLDVKEGEGTDRIPAAEMLVKVSFRLKIGELIDSNIMQLYPITF 211

Query: 202 ----------PQETLLKTTLISLSSQNKSENQSEDLIDPFARK----------------- 234
                     P +         +S+    +   +    P  +                  
Sbjct: 212 AKDLIAELTDPAQEEEPVQEAQVSTPEPQQAAPQTQSAPAQQAAPPKRQAKPKPAAPVNV 271

Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + ++I   +   + ++K+V+ L  G +I      
Sbjct: 272 APVEFEAFSEPQHSTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLA 331

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  N + +   E+  + +N+ +R+TD ++  ++ 
Sbjct: 332 GEPVDILVNKRIVAKGEVVVIDENFGVRVTDILSQSERL 370


>gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P
           phosphatase fliY) (Flagellar motor switch protein fliY)
           [NC10 bacterium 'Dutch sediment']
          Length = 324

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 92/316 (29%), Gaps = 24/316 (7%)

Query: 22  TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81
           +  L + +T+       G L  +   ++F       V + +        S ++       
Sbjct: 11  SASLAEVETVSSALERHGQLVFEASSQVFSVLCGRPVRLRFDRIVPVSPSTLLALLPGPC 70

Query: 82  V-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
           V  +  +         +    +  I L + +LG       +L    L  + +  A +   
Sbjct: 71  VGMAMQASQGLVGAEHLVWRADDAIGLAQLILGEEPTPGSELSADYLDALSEA-ANQIGG 129

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVL 199
            +   L   +                  +     R           ++T E + +    L
Sbjct: 130 SLGTALRAALGKPVTVEAGTVTALTEAGVCLAVFREEASTPLLCVASLTREGLASGEVAL 189

Query: 200 IIPQETL------LKTTLISLSSQNKSENQSEDLIDPF--------------ARKTYQLN 239
           I+    L             ++ ++     S     PF                    +N
Sbjct: 190 IVSPSLLPETDKAQPHNDTLVAKEDTVSATSASAQAPFVPLTGGERVGPNNGIDMLLDVN 249

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   +  ++D++ L  G ++    +      +  N K I   E+  + +N+ +R
Sbjct: 250 LQVSVELGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEVIIIDENFGVR 309

Query: 300 ITDRINFDQKSLKNFL 315
           +T  I      +KN  
Sbjct: 310 LTS-ITSVADRIKNLR 324


>gi|256370968|ref|YP_003108792.1| surface presentation of antigens (SPOA) protein [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007552|gb|ACU53119.1| surface presentation of antigens (SPOA) protein [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 302

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 88/270 (32%), Gaps = 7/270 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +  ++    L     +    +    +   V +         +  ++       +    +
Sbjct: 24  DRAEQRGLELLVENALRPAATLMGASLRRGVRLELGRMDQLPWEQVVAQQDGPALVISFA 83

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L    S   +    +  + LL+            +  R+L+ +E+ L  +  + +   L 
Sbjct: 84  LVPLGSRGVLRFGADAALRLLDLR---LGGDGSPIEPRALTELEQGLLVQVFSDLLVQLA 140

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL 206
             + T  +    L+       L+        E    + + + I + + S   L +P   L
Sbjct: 141 SSLQTLLDV--RLDRVGAETSLEFVQVISPGEMCLVVPIALGIGDELESELTLYLPYSML 198

Query: 207 LKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                +       + ++  D   D  A + + + + +  R      + + ++ L  G V+
Sbjct: 199 RPVVELIAQRAIVAVDRGGDTFRDLLAARLHDVRLEVSVRFEPTSISSRTLLELAPGDVV 258

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKN 295
           P  HR+   A +  +   ++   +G+ G  
Sbjct: 259 PLGHRQGQPAWVIVDRTRLHRAVMGQSGSR 288


>gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 353

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 98/339 (28%), Gaps = 55/339 (16%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q      SP+   +L+ L               ++      FL    + K   DV+    
Sbjct: 33  QKEVPGMSPVDRDILSDLLSSCFQVA--GNTLGAVLSRSSAFLNPNVETKSRKDVESELK 90

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S      S +  S               +    +  S    + +  +++G          
Sbjct: 91  SGSFLLCSTLSGSV--------------NGRIVLVMSAENAVKIANSMMGG-------FE 129

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVT 182
           +  L   + +  + ++  +   L   IST      N       +        L + E + 
Sbjct: 130 SGELDEAQIQTLRDSLTPVMGALISQISTKTGGGVNGSPSETRNVTSPAALVLPDGETMV 189

Query: 183 TINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS-------------------QNKSEN 222
            +  N+TIEN+ S     ++   T      +   S                      S +
Sbjct: 190 RVFFNLTIENIPSFRVQFLLSLSTASDLLNLYRRSGSVGGDMSNMGMGGMGMGASPGSMS 249

Query: 223 QSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + +++   +   K  +KD++ L  G +I      
Sbjct: 250 VKSVAFPNLGTASGASNTPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLA 309

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                L  NGK I   E+  + +N+ +R+TD ++   + 
Sbjct: 310 GEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPIDRI 348


>gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 353

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 98/339 (28%), Gaps = 55/339 (16%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           Q      SP+   +L+ L               ++      FL    + K   DV+    
Sbjct: 33  QKEVPGMSPVDRDILSDLLSSCFQVA--GNTLGAVLSRSSAFLNPNVETKSRKDVESELK 90

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           S      S +  S               +    +  S    + +  +++G          
Sbjct: 91  SGSFLLCSTLSGSV--------------NGRIVLAMSAENAVKIANSMMGG-------FE 129

Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVT 182
           +  L   + +  + ++  +   L   IST      N       +        L + E + 
Sbjct: 130 SGELDEAQIQTLRDSLTPVMGALISQISTKTGGGVNGSPSETRNVTSPAALVLPDGETMV 189

Query: 183 TINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS-------------------QNKSEN 222
            +  N+TIEN+ S     ++   T      +   S                      S +
Sbjct: 190 RVFFNLTIENIPSFRVQFLLSLSTASDLLNLYRRSGSVGGDMSNMGMGGMGMGASPGSMS 249

Query: 223 QSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + +++   +   K  +KD++ L  G +I      
Sbjct: 250 VKSVAFPNLGTASGASNTPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLA 309

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                L  NGK I   E+  + +N+ +R+TD ++   + 
Sbjct: 310 GEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPIDRI 348


>gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1]
 gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1]
          Length = 411

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/340 (11%), Positives = 93/340 (27%), Gaps = 59/340 (17%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88
                   +G +          E +   V+I+    +      +  SF   ++  +    
Sbjct: 65  EEMDALGEIGNISMGSASTTLSELLSQKVNITSPRVKIQTKQQLFDSFNIPYLVIKVDFN 124

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              +    +    N   T+   ++G     + +  +    +   +     I   +  L+Q
Sbjct: 125 EGLNGYNVLVIKLNDAATMASLMMGGDGTPMSEEISELEISAASEAMNMMIGTAATSLSQ 184

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRL-SNEFVTTINMNMTIENV--ASSFVLIIPQET 205
               T   SP   +                 + +  ++ +M I ++       ++  +  
Sbjct: 185 MFQRTINISPPQTNLLRSKGDPLAQPPQDIEDVIVVVSFDMKIGDLVDTEIMQIMSVETA 244

Query: 206 LLKTTLISLSSQNKSENQ--------------------SEDLIDPFA------------- 232
             +  L+       +E Q                     +   D  A             
Sbjct: 245 KEEAHLLLKDIMGGTEEQVEAPMVPTEAATSATSIPGSDDRESDELAGIMMQETAPPPTP 304

Query: 233 ----------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
                                      + + +   +   K  +KDV+ +  G V+     
Sbjct: 305 AMPPQAAPIKQTSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSL 364

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                 +  NG  + + E+  V +N+ IRIT+ I+  ++ 
Sbjct: 365 ADEPVDILVNGTLVATGEVVVVNENFGIRITNIISPMERV 404


>gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 383

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 104/343 (30%), Gaps = 60/343 (17%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +          + ++ +V+I+           +  SF+    V        
Sbjct: 42  KDLLGEIGNISMGSASTALYQIINQNVNITTPVVSLTTLKDMKASFETPNIVLDVEYTEG 101

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQC 149
                 +    +    +   ++G   +         +  +  ++   + I   +  +   
Sbjct: 102 IIGRNILVMKTDDAAVIANLMMGGDGQVSENPELSEIEVSAVQEAMNQMIGSAATSMATM 161

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL-- 206
            S   + SP     +             +E +  ++  + I + V S+ + I+P  T   
Sbjct: 162 FSRRVDISPPTSKLWKEKSEPITETLSEDEEIVRVSFRLIIGDLVDSNIMQILPLNTAKK 221

Query: 207 -----------------------LKTTLISLSSQNKSENQSEDLIDPFARK--------- 234
                                   K  + + + + ++E +      P             
Sbjct: 222 IVSIMMGEEESSSVATDPKKVVEEKPVVKATTQKAEAEKRESIQAKPIVEAPRVQQPIEV 281

Query: 235 ----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                                    + ++I   +   K ++KD++ L  G +I      +
Sbjct: 282 HEAAFETLVPGDTAQVPKNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAE 341

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
               +  NGK+I   E+  V +N+ +RIT  ++ + + +K+  
Sbjct: 342 EPVEILVNGKKIAYGEVVVVDENFGVRITSIVS-NAERIKSLR 383


>gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16]
 gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16]
          Length = 395

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/335 (9%), Positives = 97/335 (28%), Gaps = 57/335 (17%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSS 90
           +     +G +            ++  V+I+     + K   +   F    V         
Sbjct: 58  QDTIGEIGNISFGSSATALSALLNQKVEITTPVVSAVKSDMLRQLFPRPNVIVHVKYTEG 117

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +  +     + +    + + +LG + E      +    +  ++   + +   S  ++   
Sbjct: 118 FEGSNLFVITTDDAAIIADLMLGGNGENPDPELSEMHLSAVQEAMNQMMGSASTSMSTLF 177

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM---TIENVASSFVLIIPQE--- 204
           +   + SP   +  + D   +       E +  I+ ++    + +     ++ +P     
Sbjct: 178 NRRVDISPPKVEVIEFDEQSRTEYVSDGEDLIAISFSLRVGDLIDSKLMQLISVPFSKDY 237

Query: 205 -------------------------------------------------TLLKTTLISLS 215
                                                               +    ++ 
Sbjct: 238 ANALLGGGATAEPPVQEAEPLPEPAPAIGGLGDGTSAERVNQHIGQRVKDAEQVVEKAVF 297

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           S  ++    E  +         + + +   +   K T+++++++  G +I          
Sbjct: 298 SNFETTKPDEAEMQNL-DMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLAGEPV 356

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +  N K I   E+  + +N+ +RITD ++   + 
Sbjct: 357 DVLINDKLIAKGEVVVIDENFGVRITDIVSKKDRL 391


>gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
           TCF52B]
 gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
           TCF52B]
          Length = 365

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 105/349 (30%), Gaps = 53/349 (15%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
             LL +L       +  + +   +G +            +   VDI+  +    K S I 
Sbjct: 13  DSLLNQLNEDEDLTEIEKDMFGEIGNIIMGSGTTALSTLLGRKVDITVPTVDLKKISEIK 72

Query: 75  HSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
                                  +     LV  +   ++G + E   +  +    +   +
Sbjct: 73  KEVTGKNAVVSIHFKGAIEGLNALIIPQMLVAQIANIMMGGTGEVENEEVDEISLSAVSE 132

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDF--YDIDYLKKNTNRLSNEFVTT-INMNMTI 190
              + +   +  L+  +    + +P   +   +D D +       S++ V   +N  + I
Sbjct: 133 AMNQMMGAAATSLSDMLKKPVDITPPTVELIDFDGDNVNFPPIATSDDAVVAKVNFKLVI 192

Query: 191 ENVA-SSFVLIIPQETLL------------------------------------------ 207
           E +  + F L +P E +                                           
Sbjct: 193 EGLEPADFFLAMPPEFVKKLYSMIFESEKQEKVESSAAGTSSPVSTQNYAEHSATTTKNV 252

Query: 208 ---KTTLISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKI 261
                ++  +  Q+     +         +      + +N+   +   K TLK V+ L +
Sbjct: 253 EKNPVSVSPVQFQSFESGGTVKSTGEIPDRIQALLDIPLNVVVELGKTKLTLKQVMELSV 312

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           G +I           +  NGK I   E+  + +N+ +RIT+ +   ++ 
Sbjct: 313 GSLIELDKLTGEPVDIIVNGKLIARGEVVVIDENFGVRITEIVTPQERF 361


>gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4]
          Length = 388

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/372 (9%), Positives = 100/372 (26%), Gaps = 70/372 (18%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
            +   ++ P   ++L                   +G +            ++  VDI+  
Sbjct: 18  GTADSSSEPKQKVVLEDYLSPFEQDA-----LGEIGNISFGSSATALSTLLNQKVDITTP 72

Query: 64  SCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
           +    +   +   F +       +    +     +    +    + + +LG         
Sbjct: 73  TVSIIEKDKLQDEFPQPYVAIQVSYTEGFLGTNLLVIKQDDASIIADLMLGGDGLNTGTD 132

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
                 +  ++   + +   +  ++   S   + SP + D   +   +   N    + + 
Sbjct: 133 LGEIQLSAVQEAMNQMMGSAATSMSTIFSKKVDISPPIIDLMYLPEGEGVENIPDIDLLV 192

Query: 183 TINMNMTIEN-VASSFVLIIPQE-----------------------TLLKTTLISL---- 214
            I+  M I   + S+ + ++P                                       
Sbjct: 193 KISFKMKIGTLIDSNMMQLVPLSFAKSLVEDLTNNNNTNATKSDKIEEEPPKPSMATSTP 252

Query: 215 -----SSQNKSENQSEDLIDPFARKTYQLNVNI--------------------------- 242
                S Q  +  Q       F  +     VN+                           
Sbjct: 253 VQETQSQQPFTTYQQPQAPQHFGGQHLSQPVNVQPAEFASFGQPALQESEARNLNMLLDI 312

Query: 243 ----DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
                  +   K ++K+++ L  G +I           +  N + I   E+  + +N+ +
Sbjct: 313 PLSVTVELGRTKRSVKEILELSQGSIIELDKLAGEPVDILVNNRLIAKGEVVVIDENFGV 372

Query: 299 RITDRINFDQKS 310
           R+TD ++  ++ 
Sbjct: 373 RLTDIVSQTERI 384


>gi|126736779|ref|ZP_01752517.1| possible flagellar switch protein FliM [Roseobacter sp. CCS2]
 gi|126713750|gb|EBA10623.1| possible flagellar switch protein FliM [Roseobacter sp. CCS2]
          Length = 364

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 96/288 (33%), Gaps = 12/288 (4%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           LL R+T   G +     ++SS        L K   + + L + +   + +      ++ +
Sbjct: 9   LLRRMTRPQGQEVADNPLTSSRAVRLA--LTKAANDTVGLVLTVQSVAEEVTSLDDMLGT 66

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +              I     +   +LE     +    P    R+ +  +K L  
Sbjct: 67  LADELMLVALE-RDGGLAGLIALDMEMRAAVLEMETMGAVLAHP-AEARAPTLTDKTLCD 124

Query: 137 RTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
             +    +     +  +  +    ++   + I+  +     L++     + +++ +    
Sbjct: 125 PLLQAFLSAFPLAVLDTPLEGWMDSVVLGHKIESTRAAGLVLADRDYRIVRLSVDLGVAE 184

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
               L+I    +L     +   +  +     D    F  +       +D  ++    +L 
Sbjct: 185 RQAELVI----VLPVVQHAPEPET-TPETFFDWDSDFQDRVSDAPARLDALLHRFPISLA 239

Query: 255 DVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRIT 301
               L++G V+P          L + +G E+   +LG++G    +R+ 
Sbjct: 240 TAQGLQVGSVLPLPGCTVNSVRLLSPDGHEVAQAKLGQIGGYRAVRLE 287


>gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
 gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
          Length = 375

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 105/339 (30%), Gaps = 62/339 (18%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSW 91
            +   +G +            +D  V+I+    +   F  +   ++   V      +S  
Sbjct: 35  DVLGEIGNIAMGSAATALSTILDQKVEITTPKVEVVTFKELSQEYERPCVLVRVKYISGL 94

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
                +       + + + ++G    +  +L    LS + + + +   +  +++ +  ++
Sbjct: 95  EGINLLIIKEEDAMVIADLMMGGDGTSDEKLDEIHLSAIGEAMNQMMGSSSTSM-SSILN 153

Query: 152 TTQESSPNLE---DFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207
                SP      D  +++  ++      +E V +I+  + + + + SSF  I P     
Sbjct: 154 EVVNISPPETKYLDIDELNGKREKYLGSDDEKVVSISFRLKVGDLIDSSFKQIAPMGFTK 213

Query: 208 KTTLISLSSQN-----KSENQSEDLIDPFA------------------------------ 232
           +  +  +          +E +  +     A                              
Sbjct: 214 QLAVKLVEEMGGLTAKDAEEEKGEARKTVAATASTGSASTTGQPVSGSANRVSAGEENVD 273

Query: 233 ---------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + + +  R+   + T+K ++ L  G ++      
Sbjct: 274 VKRAQFPSFDNGNTAPLPQNMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLA 333

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                L  NGK I   E+  + +N+  R+ D I+  ++ 
Sbjct: 334 GEPVDLLVNGKLIAKGEVVVIDENFGFRVKDIISPMERL 372


>gi|89055183|ref|YP_510634.1| hypothetical protein Jann_2692 [Jannaschia sp. CCS1]
 gi|88864732|gb|ABD55609.1| hypothetical protein Jann_2692 [Jannaschia sp. CCS1]
          Length = 388

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 8/296 (2%)

Query: 10  TSPLHPILLARLTGKLGDKKTIEKISS-SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           + P    +L+R+        T        L     + + +       L   +   +  SG
Sbjct: 2   SDPKQRSVLSRIVAAHLRGGTDVAALEPGLQTGLTRAIRRASLPYAVLAPQVEDAAVTSG 61

Query: 69  -KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
                 + +  E  + +    +       +   + LV  L+E       E       R +
Sbjct: 62  ASLQDALDTMPEQGLTAAVEDAEGR-RGLVALDHPLVDALIEVQATGEVEKTNHPA-RKV 119

Query: 128 STVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
           + +++ L +  +  + A           ++    +     I    +    +       + 
Sbjct: 120 TRIDEALCRDFLDLVLAAFAQETAGQAGRDWPDRMRYGSIITERAQLNLLMPERGYRVLR 179

Query: 186 MNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++T+        VL++P +  +     S+   +      +   D          + +D 
Sbjct: 180 TSVTMGGHKTGDLVLVLPSDPAIARRGGSVEQPSAPAEAPKGWGDRMLGAISTAPMALDA 239

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN-GKEIYSCELGRVGKNYTIR 299
            +      L  V  L  G ++PF H + +   L    G       LG+V     +R
Sbjct: 240 VLMRTIMPLGKVEDLAQGDLVPFDHNDLSAISLEDEIGHVFARGALGQVSGRRAVR 295


>gi|168699681|ref|ZP_02731958.1| hypothetical protein GobsU_09169 [Gemmata obscuriglobus UQM 2246]
          Length = 283

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 82/266 (30%), Gaps = 11/266 (4%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW-SSNFFIGCSN 101
            +   +   + +     +     ++   ++ +  F E  +    +          +   N
Sbjct: 28  CRRTNEAAVQALRYPATLQIAKVETPSAAYCLAFFPEGAISVPLAPPDAPGGGALLVFPN 87

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            ++I LL  L+G + E +    +R  + +E  L    + +    +   + +     P + 
Sbjct: 88  PVLIALLSGLIGEAPEAL--PADREPTPMESALIPHLVREFF--VTPFLKSWPGVEPLVV 143

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
           D               NE    +   ++         L++ +          L++   S 
Sbjct: 144 DI-GAPAAPAAVWTGGNEHNIFVTFTLSAPYGEHPIYLLLTRSG----RWEQLAAIGLSP 198

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
             +             ++V +   +     T++DV  L  G VI F  +         +G
Sbjct: 199 PVTPAPKSEIESVVRAMSVEMSVILGRADLTMRDVSDLTTGDVIVFDQKVTEPLDGLVSG 258

Query: 282 KEIYSCELGRVGKNYTIRITDRINFD 307
              +    G VG    + + D I  D
Sbjct: 259 ARKFRVWPGVVGDRAAV-VVDTITGD 283


>gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM
           16994]
 gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM
           16994]
          Length = 288

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 86/289 (29%), Gaps = 26/289 (8%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           +        +        I+    +      I +          +   + +    +    
Sbjct: 8   FATEAVATIEGLTGQTPTITLKEAEEISI--ISNVIPPIAQIHVSFSGAAAGRGIVMMPP 65

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            L   L + +LG   E    + +  +        K  ++ I   ++  +++ +E      
Sbjct: 66  QLATALGDMMLGGDGEAQDTMSDEDMDAA-----KEIVSNIVGAMSTTLASQKELPKFTI 120

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII----------------PQET 205
                +++ ++     + +         + ++ S  +L I                P   
Sbjct: 121 KPERAEFIPESGEVNLDGYAKMFVFTFALGHINSLMMLAIDSTINEALTGEKAAPAPASN 180

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                  + SS   +    E  +         + + +  RI  KK  LKDV+++ IG VI
Sbjct: 181 SSNIFD-APSSSVPAVKLDEGEMKNI-GLIMGVKLPVRVRIGKKKMLLKDVLSMDIGSVI 238

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                      +  +   I   E+  V  N+ ++IT  I   +  L   
Sbjct: 239 ELNQLANDPLDILVDDHVIAQGEVVIVDGNFGVQITS-IGTKRDRLNKL 286


>gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
           Nor1]
 gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
           Nor1]
          Length = 376

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/338 (9%), Positives = 90/338 (26%), Gaps = 60/338 (17%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            +   V I+         + I   +     V        
Sbjct: 34  KDALGEIGNICMGSAATTLSILLGRRVSITTPQVSVTTLNEIKRQYPLPYLVIEVYYSHG 93

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 +       + + + ++G      P   N    +   +   + +   +  ++   
Sbjct: 94  ILGTNLLAIRQQDALIIADLMMGGDGSNPPTELNDLYMSAVSEAMNQMMGSTATSMSTVF 153

Query: 151 STTQESSPNLEDF----------------YDIDYLKKNTNR---LSNEFVTTINMNMTIE 191
               + SP   +                   I  +         + +E +  I +N+  E
Sbjct: 154 KKKVDISPPQVNVFDFGVDGNISAMAAGDEPIVSVSFRMEVEDLIDSEIMQIIPINVAKE 213

Query: 192 NVASSFVLI-----------------IPQETLLKTTLISLSSQNKS-------------- 220
            V S    I                  PQ  +      + +   ++              
Sbjct: 214 MVESLMAAIQPTPKTTTSAAPNAATSTPQPVMAPARETNFAQAQQAAALPKTHQPLTNVT 273

Query: 221 ---------ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                    +  +    D        + + +   +   +  +++++ L  G V+      
Sbjct: 274 VQPVQFAPLKPTTPTTSDTNINLIMDVPLQVTVELGRTRKLIREILELGPGSVVELDKLA 333

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                +  NGK I   E+  + +N+ +RIT+ ++  ++
Sbjct: 334 GEPVDILVNGKLIAKGEVVVIDENFGVRITEIVSPLER 371


>gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 347

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 95/313 (30%), Gaps = 32/313 (10%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88
             +      G +          + +   V I+    +  K      SF+E ++  +    
Sbjct: 36  AEKDALGEAGNISMGSAATSLSQLVGRKVIITSPRVEVQKEKEFFASFREPYMVIEVEFT 95

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S    +    N V  +   ++G       ++     S  ++ + +   +     L++
Sbjct: 96  EGLSGKNVLIIKENEVGVIASLMMGGDGTHSGEITELEQSAAQEAMNQMIASSA-TALSE 154

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207
                   SP      +            +E V  I  NM IE+ V +  + ++   T  
Sbjct: 155 IFKRKINISPPRSKMINSRENDTYEPFGGHE-VVVIYFNMQIEDLVDTDIMQVMEPATAK 213

Query: 208 KTTLISLSSQNKSENQSEDLIDPFA----------------------------RKTYQLN 239
           +   + L+    S      ++                                     + 
Sbjct: 214 EVAQMLLAKVYGSPETEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIP 273

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + ++  +   +  +K++++   G +I           +  NG  +   E+  VG+N+ I+
Sbjct: 274 LKVEVVLGRTRRPIKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIK 333

Query: 300 ITDRINFDQKSLK 312
           I   ++  ++  K
Sbjct: 334 INQILSPKERLSK 346


>gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 366

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 102/352 (28%), Gaps = 59/352 (16%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            LL  + G     +  E     +  LY +    + +     +V I     +    +  + 
Sbjct: 13  ALLKGIGGASKQDEDEE--LKEIASLYAQAFTNVLQLLSGGEVKIDVGESRVCGQAAFVE 70

Query: 76  SFKENF-VFSQASLSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
             +++  +       ++         S    + L + ++G     +P   N    +  ++
Sbjct: 71  ELEKSSYLLYVVDYDAFEGWYHAFVMSERTALLLADIMMGGDGVELPDSMNDLYLSAAQE 130

Query: 134 LAKRTIAQISAVLNQCIST------------------TQESSPNLEDFYDIDYLKKNTNR 175
              +      + +   +S                     E  P+ E+ +      +  + 
Sbjct: 131 GLSQITGAAISEMVNLLSGRRIGIKNTSCSLKVEGWLPFELLPSSENVWVFSLNAEIKDV 190

Query: 176 --------LSNEFVTTINMNMT--IENVASSFVLII--PQETLLKTTLISLSSQNKSENQ 223
                   +  + V  ++  +   + +           P+ET    +        ++  +
Sbjct: 191 GNLKLWSLMPQKIVQVLSDEIKKRVGSREQPQKRSEQGPKETGSPVSAKVSQVAREASGR 250

Query: 224 -------------------------SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
                                     +D+          + V I  R+     T+ +++ 
Sbjct: 251 VVGEEVSGAVEVRPAEFVPLDKQIADQDMDGHNFDLIVDVPVRITVRLGQAAKTIGEILN 310

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           L  G VI           +  NGK I   E+  + +N+ +RIT+ +N   + 
Sbjct: 311 LTPGSVIELDKMAGDPVDILVNGKLIARGEVVVIDENFGVRITEIVNRSDRI 362


>gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 401

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/376 (10%), Positives = 100/376 (26%), Gaps = 81/376 (21%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
            P                + +   +G +            ++  V+I+           +
Sbjct: 23  DPPSETNSQDDPQLPDIEKDLLGEIGNISMGSASTALSTIINQQVNITTPVVVVTTLKEL 82

Query: 74  IHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
            + F+                   +         +   ++G   +  P +  + L  +E 
Sbjct: 83  KNEFEVPNVALEVKYTEGIIGENLLVMKITDAAVIASLMMGGDGKIDPDI--KELGEIEI 140

Query: 133 KL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
                   + I   +  +   +      SP +   ++            +E V  ++ ++
Sbjct: 141 SAVSEAMNQMIGSAATSMATMLMREVNISPPVSKVWNDITKPLTEGISEDEAVVKVSFSL 200

Query: 189 TIEN-VASSFVLIIPQETLLKTTLISLSS------------------------------- 216
            I   V SS + ++P  T  K   I +                                 
Sbjct: 201 KIGELVDSSIMQVLPIATAKKVVSIMMGQEETAPAESAPSAPENDSTSTEPELEPQPESQ 260

Query: 217 -----------QNKSENQSEDLIDPFARKTYQLNVNI----------------------- 242
                      Q++ E ++     P      +  V +                       
Sbjct: 261 PPIQQSQPAPAQSQMEQRTPVYEKPIETNVNKQPVEVSRASFQPLSGSQDTEVVPKNIDL 320

Query: 243 --------DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                      +   K  +KD++ L  G +I      +    +  NGK++   E+  + +
Sbjct: 321 ILDVPLEISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVIDE 380

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RIT  ++ ++K 
Sbjct: 381 NFGVRITGIVSNEEKI 396


>gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 390

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/372 (10%), Positives = 107/372 (28%), Gaps = 62/372 (16%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTI-----EKISSSLGYLYKKFLPKIFKEKMD 55
           MRGQ ++    P      A L    G+  T+     +     +G +          E ++
Sbjct: 14  MRGQLLNNANQPEQGSNQATLPPDSGEMSTLLTDEEKDALGEIGNISMGSASTTLSELLN 73

Query: 56  LDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGA 114
             V I+    +    + +  SF+  ++  +       +    +    +    +   ++G 
Sbjct: 74  QKVSITSPRVRVMTKTELFDSFEVPYLVIKVDFSEGLNGYNLLIIRLSDAAVMASLMMGG 133

Query: 115 SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN-- 172
              T+ +  +    +   +     I   +  L+Q        SP   +            
Sbjct: 134 DGTTMSEEISELEISAAAEAMNMMIGTAATSLSQMFHRPINISPPQTNLLKTKSDPLVHP 193

Query: 173 -TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS------- 224
                    V + ++ +          ++  +    +  L+ +     +++++       
Sbjct: 194 PEQIEETIVVVSFSLKIGDLVDTDIMQIMGVETAKEEANLLLMDIMGLAQDETPAPETAP 253

Query: 225 ------------------------------------------EDLIDPFARK----TYQL 238
                                                        +    ++       +
Sbjct: 254 AGAANANPVSPPVGNMAETPAPTAPMPTSPGIAGFSGEETFRPQNLGSLEQRNLELILDI 313

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +   +   K  +KDV+ +  G V+           +  NG  + + E+  V +N+ +
Sbjct: 314 PLKVSVVLGRTKRPIKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVVVVNENFGV 373

Query: 299 RITDRINFDQKS 310
           RIT+ I+  ++ 
Sbjct: 374 RITNIISPMERI 385


>gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sp. AT1b]
 gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sp. AT1b]
          Length = 376

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 96/337 (28%), Gaps = 59/337 (17%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
                 +G +            +   V+I+       +   +   +              
Sbjct: 38  SDALGEIGNISFGNSATALSTLLQQKVEITTPVVSEVRIEALRERYPTPHVALRVGYTEG 97

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                 +  +      + + +LG S E      L    LS V++    + +   +  L+ 
Sbjct: 98  IQGENVLVLTREDAAIISDLMLGGSGENVDPESLDEIRLSAVQEA-MNQMMGAAATSLST 156

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVTTINMNMTIEN-VASSFVLIIP---- 202
             S   + SP L + +D    +   +RL   E +  I  N+ +   + S+ V I P    
Sbjct: 157 VFSKKIDISPPLVEVFDATKNQTIIDRLELWETMVLIEFNLKVGTLIDSTIVQIAPIQFG 216

Query: 203 --------------QETLLKTTLISLS--------------------------------- 215
                         Q T         +                                 
Sbjct: 217 KQLVDELMKATGEAQATPEPVKAQPQAEAPKPQPQAQQQAQPVAPQPSKQKSMPEVAVSQ 276

Query: 216 --SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
                     S++         Y + +N+   +   K ++++V+ L  G +I        
Sbjct: 277 AEFMPLQSPASQEAAPANLGLLYDVPLNVTVELGRTKKSVREVLELSQGSIIELDKLAGE 336

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              +  N + I   E+  + +N+ +R+T+ I   ++ 
Sbjct: 337 PVDIYVNQQRIARGEVVVIEENFGVRVTEIIQPHERI 373


>gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
 gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
          Length = 547

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/304 (8%), Positives = 93/304 (30%), Gaps = 28/304 (9%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS    ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPHVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 364 EMFKEKMDMTPPEVKFVTLREEMEYLGEAMEGDELVQITFNIEIGDLLQSKMYQILPISE 423

Query: 206 L-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNV 240
                  +                             + +   +             + +
Sbjct: 424 AKEMVRRLLYPMVEGQEEQIEEEIEEEDIVAPVVQPIEFKEVKQIEPVYMDTSILQNVEM 483

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           N+         T++D+++L+  + +           +  N   +   EL  V   + +++
Sbjct: 484 NVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKV 543

Query: 301 TDRI 304
           T  +
Sbjct: 544 TKTL 547


>gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 572

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/334 (9%), Positives = 84/334 (25%), Gaps = 55/334 (16%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV-FSQA 86
           +   +     +G +            ++  V I+         + ++ SF+  F+     
Sbjct: 237 ESQEKDALGEVGNISTGSASTTLSALLNQRVQITSPRISILTETELLSSFELPFMTVKVQ 296

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                        +    + + + ++G               +   +   + I   +  L
Sbjct: 297 YTEGIIGFNLWVVTLRDALIIADLMMGGEGIPASNEITELEISAASEAMNQMIGTAATSL 356

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV------------- 193
               +     SP                 +    +  I+  M + +V             
Sbjct: 357 AAIFNRIINISPPETHIIRAREN--LGEIIDTHPLVVISFRMIVGDVMDTEIMQIMSVET 414

Query: 194 -----------------ASSFVLIIPQETLLKTTLISLSSQNK----------------- 219
                              +  +  P  +    T     + +                  
Sbjct: 415 AKYEVGLLLSGLEPAAPEMAVRVEEPVPSTEPVTNKPPENLSPMAAGGQNQTGYQSVPEE 474

Query: 220 ---SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                    +           + +N+   +   K  +KDV+ L  G V+      +    
Sbjct: 475 RVSQTPADVNWDK--INLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVE 532

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG  +   E+  V +N+ +RIT+ I   ++ 
Sbjct: 533 VLVNGTLVARGEVVVVNENFGVRITNVITPQERI 566



 Score = 36.2 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 3/231 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SS 90
                 +  +            ++  V IS  S         + S++ +++  +      
Sbjct: 39  IDALGEVSNISMGTSSTTLSSLLNQQVQISGASISIMSEEEFMSSYRASYMAVRVQFVKG 98

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            S         +  + +   ++G     +    N    +   +   + I+     L    
Sbjct: 99  LSGFNLWLVKLHDALVMANLMMGVEGTPVTGEINELEISAASEAMNQMISTSVTGLAGMF 158

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           + T + SP      +     +         V    M +    + +  + II  ET  +  
Sbjct: 159 NRTIDISPPQTRIINEGDTLEELVVEGPFVVLFFKMTVGDM-LDTEIIQIISVETAKEAV 217

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
              +++ + S   S + I     K     V   +      TTL  ++  ++
Sbjct: 218 SSLMNAMDVSAGVSLENILESQEKDALGEVGNIST-GSASTTLSALLNQRV 267


>gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
 gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
          Length = 548

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 246 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 305

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 306 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 365

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 366 EMFKEKMDMTPPDVKFVTLKEEMEYLGEAMEVDELVQITFNLEIGDLLQSKMYQILPISE 425

Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241
             +     L                           + +   +             + +N
Sbjct: 426 AKEMVRRLLYPMVEAEEEIAEEEIEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 485

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +         T++D+++L+  + +           +  N   +   EL  V   + +++T
Sbjct: 486 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 545

Query: 302 DRI 304
             +
Sbjct: 546 KSL 548


>gi|260575623|ref|ZP_05843621.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
           SW2]
 gi|259022266|gb|EEW25564.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
           SW2]
          Length = 325

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 73/249 (29%), Gaps = 8/249 (3%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           +++     Q    + ++    E  + +            +  S +++  L+E        
Sbjct: 41  LEVEKLDIQRRSLTELLDMPPERALIAVLE-GPAEGLGVLVISPSILAGLIEAQTVGQVS 99

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNR 175
             P+   R  +  +  +    +      +   +    +   +        +D  +     
Sbjct: 100 PRPEFA-RKPTRTDAAMVAGMLDLALEGMESLLVAEDDLVWAGGFRYASFLDDPRPLGLL 158

Query: 176 LSN--EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233
           L +    +    +++       S +L +P +   +       +       +         
Sbjct: 159 LEDVPYRLVQAQISLAGGMKTGSLMLALPADGRGR-KPRRPDAVAPQAGAALMFAAAMNE 217

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRV 292
           +    +  ++  +      L  V+ LK+G V+P          L+   G+ +    LG+ 
Sbjct: 218 QVMAADCTLEAVLAKVTLPLAAVMKLKVGDVLPLGTAALDRIALTGITGQPVAVGRLGQN 277

Query: 293 GKNYTIRIT 301
                +R+ 
Sbjct: 278 RGMRAVRVD 286


>gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Dethiobacter alkaliphilus AHT 1]
          Length = 541

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/322 (10%), Positives = 92/322 (28%), Gaps = 44/322 (13%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
                     + +G +            +D  V+I+           +   + +  V   
Sbjct: 215 AISADEGDTIAEIGNISMGAAATALSTLLDNRVNITTPRISITTLRQVREQYPQPCVVVN 274

Query: 86  ASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                  S    +         +   ++G   +      +    +   +   + +   S 
Sbjct: 275 VRYRTGLSGENVLIMGEQDAALIAAVMMGEPTDGPLGELDEIRLSAVSEAMNQMMGSSST 334

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQ 203
            L +  S   + +P + ++ +    + +     ++ +  ++  M + ++  S  + +IP 
Sbjct: 335 ALAEMFSREVDITPPVTEYGNPAE-EADLTVNIDDPMVQVSFRMEVADILDSDLIQLIPL 393

Query: 204 ETL-LKTTLISLSSQNKSENQS-------------------------------------- 224
           +       ++  +   + EN                                        
Sbjct: 394 KFAREMAGVLLGAFAGEEENHDFAQETEPVVEPLLPNVEDVEPVMSTEPQDWLQESSPES 453

Query: 225 --EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
              +           + V I   +  +K  LK+++  K G V+           + ANGK
Sbjct: 454 TLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDILANGK 513

Query: 283 EIYSCELGRVGKNYTIRITDRI 304
            +   E+    + + I+IT+ +
Sbjct: 514 LVARGEVVHYNERFGIKITEIM 535


>gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
           4222]
 gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
           4222]
          Length = 544

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/305 (8%), Positives = 96/305 (31%), Gaps = 32/305 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419

Query: 203 -QETLLKTTLISLSSQN---------------------KSENQSEDLIDPFARKT-YQLN 239
             E       +                           + +   +             + 
Sbjct: 420 IYEAKEMVRRLLYPMVEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVE 479

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+         T++D+++L+  + +           +  N   +   EL  V   + ++
Sbjct: 480 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 539

Query: 300 ITDRI 304
           +T  +
Sbjct: 540 VTKSL 544


>gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
 gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
          Length = 545

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVNGFFGV 539

Query: 299 RITDRI 304
           ++T  +
Sbjct: 540 KVTKSL 545


>gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
 gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
          Length = 343

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 91/297 (30%), Gaps = 37/297 (12%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
                  +  +V ++           ++ SF E  V  Q          F I    +L  
Sbjct: 42  TAALGIVIGREVKVTLVEISQKTLKDLLSSFDETIVAVQIEFSDGLKGEFLILFPQSLGA 101

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS---TTQESSPNLED 162
            + + ++G S E      +    +   +   + +   +  L++      +  +   +L  
Sbjct: 102 RIADMMMGGSGEPESFELDEVRLSAITETMNQMMGSSTTSLSEQTKKKVSISKLKVDLVK 161

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS--------- 213
             +   L  N  ++       I++     +  S  +LI P         I          
Sbjct: 162 KDEEPVLNFNLAQVLAYVAYEIDLE---NSHKSKILLIAPALFFKDIYKIIHPAQEPEKE 218

Query: 214 --------------------LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
                                 SQ  + +   +  D        + + +   +   K TL
Sbjct: 219 KEQKREEEKVKVQPVQFQEFDQSQRAAVSTPSEFSDKL-ELLLDVPLKVVVELGRAKMTL 277

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           K V+ + IG +I           +  NG+ I   E+  V +N+ +RIT+ +   Q+ 
Sbjct: 278 KQVLEMNIGSLIELDKLTGEPVDILVNGRLIAKGEVVVVDENFGVRITEIVTPKQRI 334


>gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 546

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVNGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 544

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/305 (8%), Positives = 96/305 (31%), Gaps = 32/305 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419

Query: 203 -QETLLKTTLISLSSQN---------------------KSENQSEDLIDPFARKT-YQLN 239
             E       +                           + +   +             + 
Sbjct: 420 IYEAKEMVRRLLYPMVEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVE 479

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+         T++D+++L+  + +           +  N   +   EL  V   + ++
Sbjct: 480 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 539

Query: 300 ITDRI 304
           +T  +
Sbjct: 540 VTKSL 544


>gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
 gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
          Length = 547

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/305 (9%), Positives = 92/305 (30%), Gaps = 30/305 (9%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + +S    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVESINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYD--IDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQE 204
           +      + +P    F     +      +   +E V  I  N+ I ++  S    I+P  
Sbjct: 364 EMFQEKMDMTPPNVKFVTLKEEMEYLGESMKVDELV-QITFNLEIGDLLQSKMYQILPIS 422

Query: 205 TL-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLN 239
                   +                             + +   +             + 
Sbjct: 423 EAKEMVRRLLYPMMEEEEEIVTEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVE 482

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+         T++D+++L+  + +           +  N   +   EL  V   + ++
Sbjct: 483 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 542

Query: 300 ITDRI 304
           +T  +
Sbjct: 543 VTKSL 547


>gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842]
 gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842]
          Length = 545

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419

Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238
                +     L                           + +   +             +
Sbjct: 420 ISEAKEMVRRLLYPMVEEEETATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539

Query: 299 RITDRI 304
           ++T  +
Sbjct: 540 KVTKSL 545


>gi|218662604|ref|ZP_03518534.1| flagellar C-ring motor switch protein [Rhizobium etli IE4771]
          Length = 169

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 68/133 (51%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
            + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV ++Y  C+ G  +
Sbjct: 12  AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKGETGLDVTVNYLGCEIGYKN 71

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
           H+I     N     A+L +WS N  + C N  VITL+            +  +R LS +E
Sbjct: 72  HLIDDLSANVTLVDATLRNWSQNVTLACGNGFVITLMGAPARRHRRYDREPADRLLSIIE 131

Query: 132 KKLAKRTIAQISA 144
             LA     +I+ 
Sbjct: 132 LDLAVMVFDKIAK 144


>gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241]
 gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241]
          Length = 546

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423

Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241
             +     L                           + +   +             + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEITEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +         T++D+++L+  + +           +  N   +   EL  V   + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543

Query: 302 DRI 304
             +
Sbjct: 544 KSL 546


>gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 545

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539

Query: 299 RITDRI 304
           ++T  +
Sbjct: 540 KVTKSL 545


>gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
 gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
 gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 545

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539

Query: 299 RITDRI 304
           ++T  +
Sbjct: 540 KVTKSL 545


>gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
 gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
 gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 546

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
 gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
 gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
 gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
 gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
 gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
 gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
 gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
          Length = 545

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539

Query: 299 RITDRI 304
           ++T  +
Sbjct: 540 KVTKSL 545


>gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 546

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
 gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
           10987]
          Length = 546

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423

Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
                  +                            + +   +             + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +         T++D+++L+  + +           +  N   +   EL  V   + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543

Query: 302 DRI 304
             +
Sbjct: 544 KSL 546


>gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
 gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
          Length = 546

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETLLKTTLISLSSQ-----------------------NKSENQSEDLIDPFARKT-YQL 238
                +     L                           + +   +             +
Sbjct: 421 ISEAKEMVKRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
 gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
          Length = 546

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 546

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423

Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
                  +                            + +   +             + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +         T++D+++L+  + +           +  N   +   EL  V   + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543

Query: 302 DRI 304
             +
Sbjct: 544 KSL 546


>gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1]
          Length = 546

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423

Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
                  +                            + +   +             + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEVAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +         T++D+++L+  + +           +  N   +   EL  V   + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543

Query: 302 DRI 304
             +
Sbjct: 544 KSL 546


>gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
 gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
          Length = 545

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 420 IAEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539

Query: 299 RITDRI 304
           ++T  +
Sbjct: 540 KVTKSL 545


>gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
 gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
          Length = 546

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264]
 gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264]
 gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
          Length = 546

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|126741268|ref|ZP_01756947.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6]
 gi|126717673|gb|EBA14396.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6]
          Length = 458

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 83/290 (28%), Gaps = 19/290 (6%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           LAR      + K      S    + ++   +   E  DL + +      +     +    
Sbjct: 17  LARKLAVSKEGKGASN-GSFTLKVLRRSFARAASELCDLPLAVLAGRQSNRAPEELSDLL 75

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  +                    LV  L++               R+ +  +  +   
Sbjct: 76  SDQHLLIVLDGPDGR-VGAATMDAALVTALIQKQTIGQIMGKA-PSERNYTPTDAAMTAG 133

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENV 193
            +      +   +    + +      +                 +  + ++ +++ +  +
Sbjct: 134 FLELSFEKVLGLLDGQADQTLFKGYRFGAQIDSVRNLVLGLEAEDYRLISMTVDIALGTM 193

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
             S  L++P+ T  +  L   ++                     L   +   +   +  L
Sbjct: 194 QGSINLLLPEPTPEELGLAGAAA-----------GPSLGSSMGNLRAELSAVLCKMRLPL 242

Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302
            ++  LK G VIP           +S  G+ I   +LG++  +  +R+ +
Sbjct: 243 NELSNLKPGDVIPLEQAFLYETDLISIGGQSIAQGKLGQMNGSRAVRLNE 292


>gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
 gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
          Length = 546

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423

Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
                  +                            + +   +             + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEVAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +         T++D+++L+  + +           +  N   +   EL  V   + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543

Query: 302 DRI 304
             +
Sbjct: 544 KSL 546


>gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
 gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
 gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579]
 gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
          Length = 546

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187]
 gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
 gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187]
 gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
          Length = 546

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423

Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
                  +                            + +   +             + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +         T++D+++L+  + +           +  N   +   EL  V   + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543

Query: 302 DRI 304
             +
Sbjct: 544 KSL 546


>gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
 gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
          Length = 546

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423

Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
                  +                            + +   +             + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +         T++D+++L+  + +           +  N   +   EL  V   + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543

Query: 302 DRI 304
             +
Sbjct: 544 KSL 546


>gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
 gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
          Length = 546

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 364 EMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423

Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241
             +     L                           + +   +             + +N
Sbjct: 424 AKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMN 483

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +         T++D+++L+  + +           +  N   +   EL  V   + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543

Query: 302 DRI 304
             +
Sbjct: 544 KSL 546


>gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
 gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
 gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis
           KBAB4]
 gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
          Length = 548

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/329 (9%), Positives = 103/329 (31%), Gaps = 28/329 (8%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           + I + T      ++     K    +  + +   +  +       +    ++  V IS  
Sbjct: 220 EEIDEPTEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTP 279

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + ++    H         + +   +    +      + ++ +T+++ ++  + E  P+  
Sbjct: 280 NVEAINVRHYEGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKE 339

Query: 124 NRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFV 181
              L     K +  + +   +  +++      + +P    F  + + ++     ++ + +
Sbjct: 340 LSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGESMAVDEL 399

Query: 182 TTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------------- 218
             I  N+ I ++  S    I+P     +     L                          
Sbjct: 400 VQITFNLEIGDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQ 459

Query: 219 --KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             + +   +             + +N+         T++D+++L+  + +          
Sbjct: 460 PIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEPI 519

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +  N   +   EL  V   + +++T  +
Sbjct: 520 QIYVNDVLVAYGELVNVDGFFGVKVTKSL 548



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 79/234 (33%), Gaps = 3/234 (1%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
            I   +  +       +    ++  V I+    +             + V +        
Sbjct: 28  DILGEIANISFGSASTVLSTILNRQVSITAPQVELVDLYDTSDVEIPHVVLNIHFTKGLD 87

Query: 93  SNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
               +    ++ +++ + ++  + E    +       +  ++   + +   +  +++   
Sbjct: 88  MENLLVLQQDVALSIADLMMMGTGEVEEGKELGELELSAVQEAMNQMMGFAATSMSEFFQ 147

Query: 152 TTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
            T + SP  ++     + ++K +    N  V  ++  + I+N V S  V ++  E   + 
Sbjct: 148 DTVDMSPPTIKVVQLTEEMEKISGINGNNMVVKVSFELKIDNLVNSQLVQVVSVEHAKRM 207

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
               L      E + ++  +    +  + +V  +     +K  L ++  + IG 
Sbjct: 208 INKLLQLSGGVEEEIDEPTEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGS 261


>gi|254465099|ref|ZP_05078510.1| Surface presentation of antigens protein [Rhodobacterales bacterium
           Y4I]
 gi|206686007|gb|EDZ46489.1| Surface presentation of antigens protein [Rhodobacterales bacterium
           Y4I]
          Length = 430

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 84/292 (28%), Gaps = 17/292 (5%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            +LAR      +       SS      ++ L +   +  +L + +      +     +  
Sbjct: 22  SVLARKLAATKEGSGAIS-SSLTLKALRRSLARAAADLCELPLAVLAARQCNRVSEDLAR 80

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
           +  +  +       +             V  L++     +         R  +  +  + 
Sbjct: 81  NLSDKDLLVVLDCPNGR-VGAASMDAATVTALIQQQTIGAVIGKA-PNERLYTPTDAAMT 138

Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSNE--FVTTINMNMTIE 191
              + +  A +   +    +            ++ ++     +  +   V  +N+++   
Sbjct: 139 AEFLERSFAKVVSMLEGQADQAIFAGYRFGAQVENVRSLVLGMEADDYRVIELNLDLACG 198

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            +     LI+P+ T  +                        R    +   +   +   + 
Sbjct: 199 AMQGVMKLILPEPTAEELQESQGGGAQGPS---------LGRNLDSIRAELTAVLCKMRV 249

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITD 302
            L+D  +LKIG  +P          L    GK +    LG++  +  +R+  
Sbjct: 250 PLRDFTSLKIGDTLPLDQAFLYETDLLTIGGKPVAQGRLGQMNGSRAVRLNR 301


>gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
 gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
          Length = 467

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 101/318 (31%), Gaps = 28/318 (8%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S  +   P     L +++   G      +  +         +     E  D +V ++  S
Sbjct: 44  SQEQRWRPFAFRNLEKVSRAQGLLAERLRWLTP-ADGTAVAVAARLTELFDAEVRLTVES 102

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q    + +     +    +  +  +      +     L    ++ LLG + ET   +  
Sbjct: 103 VQVRPMAELRRFLGDPTFLAVLAPGALQGRAVLEVELALAHVAVDLLLGGAGET---VGL 159

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS----NEF 180
           R L+ +E+ +    + +   +L             +         +      +    +  
Sbjct: 160 RPLTDIEEGVMAYVVLEGLKLL------VPGLQAAVPRPRLDGVARGVDEVSARLGDDGP 213

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
           +  +++  T+   +    L++P   L        S+Q ++    +  ++ FA +   +  
Sbjct: 214 MLAVHLQATLGPHSGMVRLVVPAAVLDAAEPAVESTQRRARG--KADLEAFASRLSAVRS 271

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVI-------PFLHREKTCAILSANGKEIYSCE----L 289
            +   I   + + +D+ +L++  V+            E   A L          E    +
Sbjct: 272 WLRAEIGSAEISGQDLASLRVKDVLLVDALSARTDKGEAGTARLRVGKGTAGWAEAEVFV 331

Query: 290 GRVGKNYTIRITDRINFD 307
           G     Y  RITD +  +
Sbjct: 332 GE-DGRYQARITDFVQGE 348



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + I   +     T + VV L+ GQV+           LS NGK +   EL  +
Sbjct: 395 DLLGDVPLQIAVELARVPVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELVEL 454

Query: 293 GKNYTIRI 300
                +RI
Sbjct: 455 EGQLGVRI 462


>gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820]
 gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
 gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820]
 gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
 gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 546

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
               +      + ++ +T+++ ++  + E  P+     L     K +  + +   +  ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGIKEIMNQMMGHAATAMS 363

Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
           +      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P   
Sbjct: 364 EMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423

Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241
             +     L                           + +   +             + +N
Sbjct: 424 AKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMN 483

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +         T++D+++L+  + +           +  N   +   EL  V   + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543

Query: 302 DRI 304
             +
Sbjct: 544 KSL 546


>gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
 gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
 gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
 gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
          Length = 547

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/320 (8%), Positives = 98/320 (30%), Gaps = 28/320 (8%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   ++     K    +  + +   +  +       +    ++  V IS  + ++    H
Sbjct: 228 VETEIVEEHVEKEHLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRH 287

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
                    + +   +    +      + ++ +T+++ ++  + E  P+     L     
Sbjct: 288 YDGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGI 347

Query: 133 K-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTI 190
           K +  + +   +  +++      + +P    F  + + ++     +  + +  I  N+ I
Sbjct: 348 KEIMNQMMGHAATAMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEI 407

Query: 191 ENV-ASSFVLIIPQETL-LKTTLISLSSQN-----------------------KSENQSE 225
            ++  S    I+P          +                             + +   +
Sbjct: 408 GDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVPEEIEEEEIAAPVVQPIEFKEVKQ 467

Query: 226 DLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                        + +N+         T++D+++L+  + +           +  N   +
Sbjct: 468 IEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLV 527

Query: 285 YSCELGRVGKNYTIRITDRI 304
              EL  V   + +++T  +
Sbjct: 528 AYGELVNVDGFFGVKVTKSL 547


>gi|84515428|ref|ZP_01002790.1| possible flagellar switch protein FliM [Loktanella vestfoldensis
           SKA53]
 gi|84510711|gb|EAQ07166.1| possible flagellar switch protein FliM [Loktanella vestfoldensis
           SKA53]
          Length = 310

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 96/286 (33%), Gaps = 17/286 (5%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
           + G+  D   +  +++S        L K   +   L + ++ T+   G+   ++   +  
Sbjct: 1   MAGQAVDTPPVSPLTTSRAVRLA--LVKAASDAGGLVLRVASTADDVGQLDDLLGGLETG 58

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            +         +   F+     L   ++E          P   +R  +  +K L    + 
Sbjct: 59  LMLVGLDRRG-ALAGFVAVDMQLRAAMVEVQTTGRLLDQP-ADDRPATGADKALCDPLLV 116

Query: 141 QISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIENVASS 196
              + L   +  +  +    ++     +   +     L +    V  +N+ +   +    
Sbjct: 117 AFLSALPPAVMGTAYEGWVDDVTVGGRLADSRLAGLLLEDGDYRVLRMNVELGTGDRQGE 176

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +L++P        + +     + +    D    F+         +  R++  K  L   
Sbjct: 177 VMLVLP--------VQAAPMVPEEQAPVMDWETAFSAAVQDAPAMLTARLHQFKMPLGRA 228

Query: 257 VTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRIT 301
             L++GQV+P          L A +G+ +   +LG+   +  +RI 
Sbjct: 229 QALQVGQVVPLPGCTVNSVRLIAPDGRCVAQAKLGQSAGHRAVRIE 274


>gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
           12809]
          Length = 299

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 87/293 (29%), Gaps = 23/293 (7%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
           S+   + K+          D D+ +S++   SG    +   ++   +       S     
Sbjct: 11  STFTDVAKEVFQSTLNSMFDKDIKVSFSEVSSGGPDDLAGGYEGQVLIIVTEEKS----- 65

Query: 96  FIGCSNNLVITLLE-NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
             G    L+    +   L      + +    SL   +K   K   +Q  A +   +    
Sbjct: 66  --GLEAGLMFKTADITFLTNLMMMMDEPGKESLEDDDKDAIKELASQALAAVTVPLEEKT 123

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS----FVLIIPQETLLKTT 210
           +   +      +        +     +   ++ +  +N          L+          
Sbjct: 124 QVKVSFRIDDVMVNDAPALFQSDAYMIIDADLGIGDQNTTFRFYTDINLMNLFGGGDDEE 183

Query: 211 LISLSSQNKSENQSEDLIDPFA-----------RKTYQLNVNIDTRINLKKTTLKDVVTL 259
               S+    E+  E     F                 ++V +  ++   K  LKD++T+
Sbjct: 184 PDFGSAFTFPEDDDEPATGGFGGGYGGGSPSNLDLLLDIDVPVSVKMGSTKMFLKDILTM 243

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             G +I           L  N K I   E+  V   +  RI + ++  ++  K
Sbjct: 244 GSGNIIELDESADEPVELVINNKVIARGEVVIVDGYFGFRIKEIVSRAERIKK 296


>gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia
           94]
          Length = 546

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISIPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + LS +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238
                +     L                           + +   +             +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1]
          Length = 545

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/305 (8%), Positives = 96/305 (31%), Gaps = 32/305 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + LS +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETLLKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLN 239
                +     L                          + +   +             + 
Sbjct: 421 ISEAKEMVRRLLYPMVEEEIVTEEIEEEKVVEPVAQPIEFKEVKQMEPVYMDTSILQNVE 480

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+         T++D+++L+  + +           +  N   +   EL  V   + ++
Sbjct: 481 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 540

Query: 300 ITDRI 304
           +T  +
Sbjct: 541 VTKSL 545


>gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
 gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
          Length = 547

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/320 (8%), Positives = 98/320 (30%), Gaps = 28/320 (8%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   ++     K    +  + +   +  +       +    ++  V IS  + ++    H
Sbjct: 228 VETEIVEEHVEKEHLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRH 287

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
                    + +   +    +      + ++ +T+++ ++  + E  P+     L     
Sbjct: 288 YDGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGI 347

Query: 133 K-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTI 190
           K +  + +   +  +++      + +P    F  + + ++     +  + +  I  N+ I
Sbjct: 348 KEIMNQMMGHAATAMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEI 407

Query: 191 ENV-ASSFVLIIPQETL-LKTTLISLSSQN-----------------------KSENQSE 225
            ++  S    I+P          +                             + +   +
Sbjct: 408 GDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVPEEIEEEEIAAPVVQPIEFKEVKQ 467

Query: 226 DLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                        + +N+         T++D+++L+  + +           +  N   +
Sbjct: 468 IEPVYIDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLV 527

Query: 285 YSCELGRVGKNYTIRITDRI 304
              EL  V   + +++T  +
Sbjct: 528 AYGELVNVDGFFGVKVTKSL 547


>gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
 gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L]
 gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation
           [Bacillus anthracis str. A2012]
 gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W]
 gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str.
           CDC 684]
 gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str.
           A0248]
 gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
 gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
 gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
 gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str.
           Ames]
 gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str.
           Sterne]
 gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L]
 gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W]
 gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str.
           CDC 684]
 gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str.
           A0248]
          Length = 546

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + LS +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238
                +     L                           + +   +             +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
 gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
          Length = 548

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/335 (8%), Positives = 103/335 (30%), Gaps = 31/335 (9%)

Query: 1   MRGQSIHKNTSPLH---PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57
           + G    +   P       ++     K    +  + +   +  +       +    ++  
Sbjct: 214 LSGGVEEEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQP 273

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V IS  + ++    H         + +   +    +      + ++ +T+++ ++  + E
Sbjct: 274 VTISTPNVEAINVRHYEGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGE 333

Query: 118 TIPQLYNRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNR 175
             P+     L     K +  + +   +  +++      + +P    F  + + ++     
Sbjct: 334 IDPEKELSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGES 393

Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------- 218
           ++ + +  I  N+ I ++  S    I+P     +     L                    
Sbjct: 394 MAVDELVQITFNLEIGDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVEEVVEEEEI 453

Query: 219 --------KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                   + +   +             + +N+         T++D+++L+  + +    
Sbjct: 454 PAPVVQPIEYKEVKQVEPVYMDASILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDE 513

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  +  N   +   EL  V   + +++T  +
Sbjct: 514 DIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKSL 548



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 79/234 (33%), Gaps = 3/234 (1%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
            I   +  +       +    ++  V I+    +             + V +        
Sbjct: 28  DILGEIANISFGSASTVLSTILNRQVSITAPQVELVDLYDTSDVEIPHVVLNIHFTKGLD 87

Query: 93  SNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
               +    ++ +++ + ++  + E    +       +  ++   + +   +  +++   
Sbjct: 88  MENLLVLKQDVALSIADLMMMGTGEVEEGKELGELELSAVQEAMNQMMGFAATSMSEFFQ 147

Query: 152 TTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
            T + SP  ++     + ++K +    N  V  ++  + I+N V S  V ++  E   + 
Sbjct: 148 DTVDMSPPTIKVVQLTEEMEKISGINGNNMVVKVSFELKIDNLVNSQLVQVVSVEHAKRM 207

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
               L      E + ++  +    +  + +V  +     +K  L ++  + IG 
Sbjct: 208 INKLLQLSGGVEEEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGS 261


>gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 547

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/308 (9%), Positives = 93/308 (30%), Gaps = 36/308 (11%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + LS +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYD--IDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLII 201
            +++      + +P    F     +      +   +E V  I  N+ I ++  S    I+
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMKVDELV-QITFNLEIGDLLQSKMYQIL 419

Query: 202 PQETL-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-Y 236
           P          +                             + +   +            
Sbjct: 420 PISEAKEMVRRLLYPMMEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQ 479

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + +N+         T++D+++L+  + +           +  N   +   EL  V   +
Sbjct: 480 NVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFF 539

Query: 297 TIRITDRI 304
            +++T  +
Sbjct: 540 GVKVTKSL 547


>gi|149203625|ref|ZP_01880594.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035]
 gi|149142742|gb|EDM30784.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035]
          Length = 334

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/292 (11%), Positives = 93/292 (31%), Gaps = 14/292 (4%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
           H  ++ R+     D     +++          L +       L + ++         +H+
Sbjct: 10  HSSVIQRMAQAARDGSDSRQMTPVKALRLS--LARAADTLFGLGLTVATVEQMRVPLAHV 67

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
             S  +  +          +   +   +  +  L+E     S         R+ +  +  
Sbjct: 68  GRSLGDAGLLVLLEGDG-GARGALCLDSQFLAGLIEVQTTGSVR-PGLARPRAATRTDAA 125

Query: 134 LAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTN--RLSNEFVTTINMNMT 189
           +    I  +       ++   ++ P         ++ L+  +      +  +  + +++ 
Sbjct: 126 MVAPLIDAVLTEFESQLAQEHDAPPPRRFGFGDMVEDLRGLSLLLVAPDFELLRLTVDLG 185

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
                    L++P          + +S  K  N   +      +      V +D  +   
Sbjct: 186 PGAKTGRLDLLLPV-----IASPARASSGKIANTKIEAPANLEQVVNNAPVMLDAVMARL 240

Query: 250 KTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRI 300
           +  L+D++ LK G ++PF         ++   G  + + ELG++     +R+
Sbjct: 241 RLPLRDILALKPGDLLPFQRETLNDTQLVGTRGHIVATAELGQMNGLRALRL 292


>gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
 gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
          Length = 547

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/308 (9%), Positives = 93/308 (30%), Gaps = 36/308 (11%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + LS +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYD--IDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLII 201
            +++      + +P    F     +      +   +E V  I  N+ I ++  S    I+
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMKVDELV-QITFNLEIGDLLQSKMYQIL 419

Query: 202 PQETL-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-Y 236
           P          +                             + +   +            
Sbjct: 420 PISEAKEMVRRLLYPMMEEEEEIITEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQ 479

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + +N+         T++D+++L+  + +           +  N   +   EL  V   +
Sbjct: 480 NVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFF 539

Query: 297 TIRITDRI 304
            +++T  +
Sbjct: 540 GVKVTKSL 547


>gi|161520304|ref|YP_001583731.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           multivorans ATCC 17616]
 gi|160344354|gb|ABX17439.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           multivorans ATCC 17616]
          Length = 443

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 77/294 (26%), Gaps = 23/294 (7%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           L P+      G   D      I ++L       L    +      V++     +     H
Sbjct: 158 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 216

Query: 73  IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
                          L      W  +  +       + +      AS        + + +
Sbjct: 217 -----GSPSALR-FELRRADGAWRCHGAVLFDAPDALAV----FFASAPAARPDAHAAYA 266

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +   L           + +           +E ++  +       R+       I    
Sbjct: 267 NLPVPLVFEIGRTELT-MAELADVVGGDIIAIERWHAHEQNLLCVGRVPAAPAWEITGRP 325

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
           +   +    +  +P   L  T   +  +   + + S             L V++   +  
Sbjct: 326 SGSRLTVERIREMP---LEPTRTDTPPATGAAHDASPADAPR---ALDGLAVDLRFELPP 379

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
               L ++  L+ G VI            L ANG  I +  L  VG+   +R+ 
Sbjct: 380 TSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 433


>gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 546

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + LS +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238
                +     L                           + +   +             +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
 gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
 gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
 gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
          Length = 548

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/329 (8%), Positives = 101/329 (30%), Gaps = 28/329 (8%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           + I +    +   ++     K    +  + +   +  +       +    ++  V IS  
Sbjct: 220 EGIEEQAEIMEAEVVEEQIEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQPVSISTP 279

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + ++    H         + +   +    +      + ++ +T+++ ++  + E  P+  
Sbjct: 280 NVEAINVRHYNGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKE 339

Query: 124 NRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFV 181
              L     K +  + +   +  +++      + +P    F  + + ++     +  + +
Sbjct: 340 LSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGEAMEVDEL 399

Query: 182 TTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------------- 218
             I  N+ I ++  S    I+      +     L                          
Sbjct: 400 VQITFNIEIGDLLQSKMYQILSIAEAKEMVRRLLYPMVEEQEEIVEEVIEEEKIPAPAIQ 459

Query: 219 --KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             + +   +             + +N+         T++D+++L+  + +          
Sbjct: 460 PIEYQEVKQVEPVYMDASILKNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEPI 519

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +  N   +   EL  V   + +++T  +
Sbjct: 520 QIYVNDVLVAYGELVNVDGFFGVKVTKSL 548


>gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 362

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/351 (8%), Positives = 90/351 (25%), Gaps = 46/351 (13%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
             +  + L    L+         +        +G +            +   V I+    
Sbjct: 8   SQEEINELLNKSLSNQDEGEFLSQEEIDALGEIGNISIGTSATTLYTLLRNKVTITTPDV 67

Query: 66  QSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
                  +   +   F+            +  +         + + ++G          +
Sbjct: 68  ALTTVEKLQEKYSIPFIAIIVDHTEGIEGSSILIMKEEDAKIIADLMMGGDGRNTEVELD 127

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
               +   +   + +   +  L+  +      SP      +       +    +E +  I
Sbjct: 128 ELRLSAVGEAMNQMMGSSATSLSTMLKKNINISPPTLKRVNFADETLQSYFKKDEKIVKI 187

Query: 185 NMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQN----KSENQSEDLIDPFARK----- 234
           +  M + + + S  +L++      K     +S       ++    +              
Sbjct: 188 SFKMEVGDLIESEIMLLMTIPFAKKLVRELMSISKGIPFETSKSDDTDEHILENAPPEPQ 247

Query: 235 -----------------------------------TYQLNVNIDTRINLKKTTLKDVVTL 259
                                                 + + I   +      +K+++ +
Sbjct: 248 KPFNEKKAEKVSVKPVELEDFGEAETSGKKSSLDLIMDVPLEISVELGRTVKKIKEILEI 307

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             G +I           +  NGK I   E+  + +++ +RIT+ +N  +K 
Sbjct: 308 GPGSIIELEKLAGEPVDILVNGKLIARGEVVVIDESFGVRITEILNSIEKV 358


>gi|15615008|ref|NP_243311.1| flagellar motor switch protein [Bacillus halodurans C-125]
 gi|10175065|dbj|BAB06164.1| flagellar motor switch protein [Bacillus halodurans C-125]
          Length = 401

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/349 (8%), Positives = 86/349 (24%), Gaps = 68/349 (19%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASL 88
             +     +G +            ++  VDI+           +   F +          
Sbjct: 49  VEKDALGEIGNISFGSAATALSTLLNEKVDITTPQVSVIHKDQLEKEFPQPHVAVHVDYT 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
             +     +         + + +LG       +  N    +  ++   + +   S  ++ 
Sbjct: 109 EGFEGMNLLVIRTKDAAIIADLMLGGDGLNPEEELNDMHISAVQEAMNQMMGSASTSMST 168

Query: 149 CISTTQESSPN------------------------------------------LEDFYDI 166
             +   + SP                                           +   +  
Sbjct: 169 IFNKRIDISPPGVNMLDVGNDQGTDRVPEGDVLIKVSFRLRIGELIDSSIMQLVTVPFAK 228

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE- 225
             +    N   +E    + M +  +    +     P        +   +     ++ S+ 
Sbjct: 229 KMVDDLMNPAQDEVAGAVAMEVDQQPRQETVNEAPPTNQTDPVHMQQPTQGGYRQSMSQP 288

Query: 226 ----DLIDPFA--------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
                                               + + +   +   K ++KD+++   
Sbjct: 289 PLQTRRQANVQPAAFTNFEHPELNDTEAGNLDMLLDIPLQVTVELGRTKRSIKDILSFTQ 348

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           G +I           +  N K I   E+  + +N+ +R+T+ ++  ++ 
Sbjct: 349 GSIIELDKLAGEPVDILVNQKLIAKGEVVVIDENFGVRVTEILSQRERI 397


>gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1]
 gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus
           WK1]
          Length = 383

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/342 (8%), Positives = 93/342 (27%), Gaps = 61/342 (17%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+  +    + + +   F         +    
Sbjct: 40  QDALGEIGNISFGSSATALSMLLNQKVEITTPNVSLVERAKVAEEFPHPYVAIQVSYTEG 99

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +    +    + + ++G      P   +    +  ++   + +   +  ++   
Sbjct: 100 FLGTNLLVIKQSDAAIIADLMMGGDGTNPPAFMDEIQLSAVQEAMNQMMGSAATSMSTIF 159

Query: 151 S------------------------------TTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           S                                      + +  D + ++      + E 
Sbjct: 160 SKKVDISPPSLHLLDLKEGEGFEYLPPDDVLVKVSFRLKVGNLIDSNIMQLLPIHFAKEL 219

Query: 181 VT-TINMNMTIENVASSFVLIIPQETL-----------------------------LKTT 210
           V   +N + T    +++     P +T                                  
Sbjct: 220 VENLLNPSSTKTETSATINTNEPHQTAPSAQTKPAPSSAQQTQKEAPQHFGTGAVQQPVN 279

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +  ++  +       +           + + +   +   K +++D+++L  G +I     
Sbjct: 280 VQPVAFASFEPAPLPEAESRNLDMLLDIPLQVTVELGRTKRSVQDILSLSSGSIIELDKL 339

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                 +  N K I   E+  + +N+ +R+T  I+   +  K
Sbjct: 340 AGEPVDILVNNKLIAKGEVVVIDENFGVRVTSIISQSDRLNK 381


>gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 375

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/344 (11%), Positives = 96/344 (27%), Gaps = 58/344 (16%)

Query: 24  KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV- 82
                +  + I   +G +            +   V I+        +  +   F   ++ 
Sbjct: 29  GKELTEEEQDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNIPYIG 88

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQ 141
                      +  +      V+ + + ++G   +    ++ +  LS + +    + I  
Sbjct: 89  VEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEGKVEDGEITDLHLSAIGEA-MNQMIGS 147

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM--------------- 186
            +  L+  ++ T   SP      D               V  I                 
Sbjct: 148 AATSLSTLLNKTINISPPKAFVVDFTASLPTDISFPEGDVVKIAFKMEVGEIIDSEIMQL 207

Query: 187 ----------------------NMTIENVASSFVLIIPQETLLKTTLISLSSQ------- 217
                                  +T +  +S+ ++   ++ +     IS   +       
Sbjct: 208 LPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQK 267

Query: 218 -----------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                      ++  +               + + I   +   K  +KD++ L  G +I 
Sbjct: 268 VNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIE 327

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                     + ANGK I   E+  + +N+ +RI D ++  ++ 
Sbjct: 328 LDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371


>gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus
           NVH0597-99]
 gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus
           NVH0597-99]
 gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 546

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + LS +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238
                +     L                           + +   +             +
Sbjct: 421 ITEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540

Query: 299 RITDRI 304
           ++T  +
Sbjct: 541 KVTKSL 546


>gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 375

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 98/354 (27%), Gaps = 58/354 (16%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
                 ++T      +  + I   +G +            +   V I+        +  +
Sbjct: 19  EESTENQVTNLKELTEEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEEL 78

Query: 74  IHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131
              F   +V            +  +      V+ +   ++G   +    ++ +  LS + 
Sbjct: 79  KKEFNIPYVGVEVEYTEGLKGHNLLILKKEDVLKMTNLMMGGEGKVEDGEITDLHLSAIG 138

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM----- 186
           +    + I   +  L+  ++ T   SP      D               V  I       
Sbjct: 139 EA-MNQMIGSAATSLSTLLNKTINISPPKAFIVDFTASLPTDISFPEGDVVKIAFKMEVG 197

Query: 187 --------------------------------NMTIENVASSFVLIIPQETLLKTTLISL 214
                                            +T +  +S+ ++   ++ +     IS 
Sbjct: 198 EIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVIIENDEKIVETANNISP 257

Query: 215 SSQ------------------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
             +                  ++  +               + + I   +   K  +KD+
Sbjct: 258 GGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDI 317

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + L  G +I           + ANGK I   E+  + +N+ +RI D ++  ++ 
Sbjct: 318 LELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371


>gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
 gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
          Length = 547

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/307 (8%), Positives = 96/307 (31%), Gaps = 34/307 (11%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + LS +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETLLKTTLISLSSQN------------------------KSENQSEDLIDPFARKT-YQ 237
                +     L                            + +   +             
Sbjct: 421 ITEAKEMVRRLLYPMVEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQN 480

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + +N+         T++D+++L+  + +           +  N   +   EL  V   + 
Sbjct: 481 VEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFG 540

Query: 298 IRITDRI 304
           +++T  +
Sbjct: 541 VKVTKSL 547


>gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
           49176]
 gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
           49176]
          Length = 370

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 98/361 (27%), Gaps = 60/361 (16%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G      +       L    G        +     +  +            ++  V+I
Sbjct: 14  LGGMGEDSGSDSSDTQTLG---GADPLSGEEKDAIGEISNISMGTAATTLSTLLNQRVNI 70

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +  +     +  I  S+    VF Q S +     N  +      V  + + ++G S   +
Sbjct: 71  TTPNVSIANWDDISQSYDRPCVFIQISYIEGLDGNNILILREKDVKIITDLMMGGSGTDV 130

Query: 120 PQLYNRSLSTVEK-KLAKRTIAQISAVLNQCISTTQESSP---NLEDFYDIDYLKKNTNR 175
                  L      +   + +   +  ++  +    + SP   +L D       +   + 
Sbjct: 131 DATELTELHLSAICEAMNQMMGSAATSISSVLEKKVDISPPTASLIDLEGTIDEEGLGDF 190

Query: 176 LSNEFVTTINMNMTIEN-VASSFVLIIPQETLL--------------------------- 207
           L  +FV  +   + I + + S  + + P +                              
Sbjct: 191 LKGQFV-KVAFRLEIGSLIDSELMQLYPIDFAKELYSKFMSSTETEQPAPAAQQPAAPTP 249

Query: 208 -----------------------KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
                                     +     Q    N +  +          + + +  
Sbjct: 250 QPVAQQPTAPAPQPMPTPAMPSQPVNVAPAQFQAFDTNINPLMQQENIGLIMDVPLEVTV 309

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +     T+K+++    G +I           L  NGK +   E+  +  N+ IRIT+ +
Sbjct: 310 ELGRTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIEDNFGIRITEIV 369

Query: 305 N 305
            
Sbjct: 370 K 370


>gi|152975143|ref|YP_001374660.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023895|gb|ABS21665.1| CheC, inhibitor of MCP methylation [Bacillus cytotoxicus NVH
           391-98]
          Length = 554

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/325 (9%), Positives = 98/325 (30%), Gaps = 40/325 (12%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            L+     +    +  + +   +  +       +    ++  V IS  + ++        
Sbjct: 234 ELVEEPPFQEKLTQEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVETIDVR-YYD 292

Query: 76  SFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK- 133
                FV           S      + ++ +T+++ ++  + E       + L+ +E   
Sbjct: 293 GVPVPFVILNVDFVEGLKSENVFVFTKDVALTMVDLMMMGTGEI---DSEQELTEMELSG 349

Query: 134 ---LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMT 189
              +  + +   +  +++      + +P    F  + + ++       ++ +  I  N+ 
Sbjct: 350 VKEIMNQMMGHAATAMSEMFMEKMDITPPTVKFVTLKEEMEYLGKEADSDELVQITFNLE 409

Query: 190 IEN-VASSFVLIIPQETLLKTTLISL-------SSQNKSENQSEDLIDPF---------- 231
           I + V S    I+P     +     L           +  +  E+ ++            
Sbjct: 410 IGDLVQSKMYQILPLSEAKEMVKRLLHVDVEESIELEEEASIKEENVEEIPEPAVEPIEL 469

Query: 232 ------------ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                             + +N+         T++D+++L     +           +  
Sbjct: 470 LEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILSLHENDAVVLDEEVDEPIRIYV 529

Query: 280 NGKEIYSCELGRVGKNYTIRITDRI 304
           N   +   EL  V   + +++T  +
Sbjct: 530 NNVLVAYGELVNVDGFFGVKVTKSL 554


>gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
 gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
 gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam]
 gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
 gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
          Length = 547

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/307 (8%), Positives = 96/307 (31%), Gaps = 34/307 (11%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + LS +E      +  + +   + 
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420

Query: 203 QETLLKTTLISLSSQN------------------------KSENQSEDLIDPFARKT-YQ 237
                +     L                            + +   +             
Sbjct: 421 ITEAKEMVRRLLYPMVEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQN 480

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + +N+         T++D+++L+  + +           +  N   +   EL  V   + 
Sbjct: 481 VEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFG 540

Query: 298 IRITDRI 304
           +++T  +
Sbjct: 541 VKVTKSL 547


>gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 318

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + +   +  +       +    ++  V IS  + ++    H         + +   +
Sbjct: 16  QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 75

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
               +      + ++ +T+++ ++  + E       + L+ +E      +  + +   + 
Sbjct: 76  EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 132

Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
            +++      + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P
Sbjct: 133 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 192

Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
                     +                            + +   +             +
Sbjct: 193 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 252

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+         T++D+++L+  + +           +  N   +   EL  V   + +
Sbjct: 253 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 312

Query: 299 RITDRI 304
           ++T  +
Sbjct: 313 KVTKSL 318


>gi|85710186|ref|ZP_01041251.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1]
 gi|85688896|gb|EAQ28900.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1]
          Length = 343

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/292 (9%), Positives = 72/292 (24%), Gaps = 28/292 (9%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
           R        + I      L     + L  +        +++S    +      +      
Sbjct: 27  RGPRPEERAQAISTWCRDLAQELAQELAPLLS---GGRLNVSIAEPEQVGAQDVFDLIGP 83

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
             V                      I L +   G       +  +  L      L ++  
Sbjct: 84  IAVNCLLRCGEGDQTVLFSLDYATAIGLTDCSFGGEGTLPDEAPS-QLPHSAAMLVEQFA 142

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN------- 192
           A ++  +   ++         +     + + +     ++  V    + +           
Sbjct: 143 ATVAQAI--VMTNGSAERARGDVLVRSESVTRLKPFGADAEVALFKLTINRGESANWCAL 200

Query: 193 ---VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
               +     ++P    ++    SL      E                + + ++  +   
Sbjct: 201 FAVASDRVDGLLPGLEAVRIRSRSLEGSGDFE----------RSGFAAMPLTLEAVVGEI 250

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
             TL  +  L+ G  IP          L          ++GR+  N  +R+T
Sbjct: 251 DLTLGRLEQLRPGDKIPLTISRDLP--LRIGETVFARGKVGRLDSNLALRVT 300


>gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 375

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/354 (11%), Positives = 98/354 (27%), Gaps = 58/354 (16%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
                 ++       +  + I   +G +            +   V I+        +  +
Sbjct: 19  EESTENQVANLKELTEEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEEL 78

Query: 74  IHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131
              F   +V            +  +      V+ + + ++G   +    ++ +  LS + 
Sbjct: 79  KKEFNIPYVGVEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEGKVEDGEITDLHLSAIG 138

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM----- 186
           +    + I   +  L+  ++ T   SP      D               V  I       
Sbjct: 139 EA-MNQMIGSAATSLSTLLNKTINISPPKAFVVDFTASLPTDISFPEGDVVKIAFKMEVG 197

Query: 187 --------------------------------NMTIENVASSFVLIIPQETLLKTTLISL 214
                                            +T +  +S+ ++   ++ +     IS 
Sbjct: 198 EIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVIIENDEKIVETANNISP 257

Query: 215 SSQ------------------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
             +                  ++  +               + + I   +   K  +KD+
Sbjct: 258 GGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDI 317

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + L  G +I           + ANGK I   E+  + +N+ +RI D ++  ++ 
Sbjct: 318 LELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371


>gi|86137304|ref|ZP_01055881.1| hypothetical protein MED193_05579 [Roseobacter sp. MED193]
 gi|85825639|gb|EAQ45837.1| hypothetical protein MED193_05579 [Roseobacter sp. MED193]
          Length = 450

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 89/289 (30%), Gaps = 19/289 (6%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           LAR      +    +K  S      ++ L +   E+ DL + +      +     ++   
Sbjct: 17  LARKLAASKESGAAQK-GSFTLKALRRSLARAASEQCDLPLAVLAARQVNRVPEDLVDDL 75

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  +       +            LV  L++               R+ +  +  +   
Sbjct: 76  SDKDLLVVLDGPNGR-LGAATMDAALVTALIQKQTIGQIMGKA-PAERNYTPTDAAMTAE 133

Query: 138 TIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI--ENV 193
            + +  A ++  +   ++            I+ ++     L  E    I++ + +    +
Sbjct: 134 FLEKSFAKVHALLQGEKDQLIFSGYRYGAQIEDVRSLILGLEGEDYRLISLTVDLAVGAM 193

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
                LI+P+ TL +  L    +               A     +   +   +   +  L
Sbjct: 194 QGELKLILPEPTLEELGLSGAKA-----------GSSLAGGMGAMRAELSAILCKVRVPL 242

Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRIT 301
            +    K+G+V+P           +   G+ I    LG++     +R+T
Sbjct: 243 NEFSAWKVGEVLPLDQAFLYETDLIDIGGRSISKGRLGQLNGARAVRLT 291


>gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
 gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
          Length = 548

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/329 (8%), Positives = 102/329 (31%), Gaps = 28/329 (8%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           + I +        ++     K    +  + +   +  +       +    ++  V IS  
Sbjct: 220 EEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTP 279

Query: 64  SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
           + ++    H         + +   +    +      + ++ +T+++ ++  + E  P+  
Sbjct: 280 NVEAINVRHYEGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKE 339

Query: 124 NRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFV 181
              L     K +  + +   +  +++      + +P    F  + + ++     ++ + +
Sbjct: 340 LSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGESMAVDEL 399

Query: 182 TTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------------- 218
             I  N+ I ++  S    I+P     +     L                          
Sbjct: 400 VQITFNLEIGDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQ 459

Query: 219 --KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             + +   +             + +N+         T++D+++L+  + +          
Sbjct: 460 PIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEPI 519

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +  N   +   EL  V   + +++T  +
Sbjct: 520 QIYVNDVLVAYGELVNVDGFFGVKMTKSL 548



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 78/234 (33%), Gaps = 3/234 (1%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
            I   +  +       +    ++  V I+    +             + V +        
Sbjct: 28  DILGEIANISFGSASTVLSTILNRQVSITAPQVELVDLYDTSDVEIPHVVLNIHFTKGLD 87

Query: 93  SNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
               +    ++ +++ + ++  + E    +       +  ++   + +   +  +++   
Sbjct: 88  MENLLVLQQDVALSIADLMMMGTGEVEEGKELGELELSAVQEAMNQMMGFAATSMSEFFQ 147

Query: 152 TTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
            T + SP  ++     + ++K +    N  V  ++  + I+N V S  V ++  E   + 
Sbjct: 148 DTVDMSPPTIKVVQLTEEMEKISGINGNNMVVKVSFELKIDNLVNSQLVQVVSVEHAKRM 207

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
               L        + ++  +    +  + +V  +     +K  L ++  + IG 
Sbjct: 208 INKLLQLSGGVAEEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGS 261


>gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
           BI429]
 gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
           BI429]
          Length = 370

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 96/335 (28%), Gaps = 56/335 (16%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSS 90
           + +   +G +            +   VDI+  + +  K   I      +N V S      
Sbjct: 32  KDMFGEIGNIIMGSGTTALSTLLGRKVDITVPAVEIKKLKEIREEVKGKNAVVSINFKGE 91

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 +      V  +   ++G          +    +   +   + +   +  L+  +
Sbjct: 92  IEGLNALVLPQMAVARIANIMMGGDGNVETDEVDEISLSAVSEAMNQMMGAAATSLSDML 151

Query: 151 STTQESSPNLEDF--YDIDYLKKNTNRL-SNEFVTTINMNM---TIENVASSFVLIIPQE 204
             T + +P   +   +D + +K        ++ V  +N  +    +E       +  P  
Sbjct: 152 KKTVDITPPTVELLDFDEEDVKFPPVVSNDDDIVAKVNFKLEIEGLEPADFFLTMSPPFV 211

Query: 205 TLL----------------------------------------------KTTLISLSSQN 218
             L                                                ++  +  Q+
Sbjct: 212 KKLYRLLFGEEKKQASPQQQAQPSTPQQAPTTENENIQNVKMSENIQKNPVSVSPVQFQS 271

Query: 219 KSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
                          +      + +N+   +   K TLK V+ L +G +I          
Sbjct: 272 FESGGIVKSTSEIPERIKALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPV 331

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +  NGK I   E+  + +N+ +RIT+ ++  ++ 
Sbjct: 332 DIIVNGKLIARGEVVVIDENFGVRITEIVSPQERF 366


>gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9]
 gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter italicus Ab9]
          Length = 375

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 94/348 (27%), Gaps = 58/348 (16%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
           +        +  + I   +G +            +   V I+        +  +   F  
Sbjct: 25  QFRSGSELTEEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNI 84

Query: 80  NFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
            ++               +      V+ + + ++G   E           +   +   + 
Sbjct: 85  PYIGVEVEYTEGLKGRNLLILKKEDVLKMTDLMMGGEGEVEEGDITDLHLSAISEAMNQM 144

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSF 197
           I   +  L+  ++ T   SP      D               V  I   M +  +  S  
Sbjct: 145 IGSAATSLSTLLNMTINISPPKAFIVDFTVFLPTDISFPEGDVVKIAFKMEVGEIIDSEI 204

Query: 198 VLIIP--------QETLLKTTLISLSSQNKSENQS------------------------- 224
           + ++P           L K    S  + ++ EN S                         
Sbjct: 205 MQLLPFDFAKELVHSVLSKNEEKSPQATSQEENASAIIESDEKSVETDNNILKEEKTTKK 264

Query: 225 ----------------------EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
                                 ++  +        + + I   +   K  +KD++ L  G
Sbjct: 265 KQKVNASPVVFQSFDEEPSIEGKEEKENL-ELILDVPLTITVELGRTKKLIKDILELSEG 323

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +I           + ANGK I   E+  + +N+ +RI D ++  ++ 
Sbjct: 324 SIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371


>gi|189353517|ref|YP_001949144.1| type III secretion system apparatus protein [Burkholderia
           multivorans ATCC 17616]
 gi|189337539|dbj|BAG46608.1| type III secretion system apparatus protein [Burkholderia
           multivorans ATCC 17616]
          Length = 385

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 77/294 (26%), Gaps = 23/294 (7%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           L P+      G   D      I ++L       L    +      V++     +     H
Sbjct: 100 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 158

Query: 73  IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
                          L      W  +  +       + +      AS        + + +
Sbjct: 159 -----GSPSALR-FELRRADGAWRCHGAVLFDAPDALAV----FFASAPAARPDAHAAYA 208

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +   L           + +           +E ++  +       R+       I    
Sbjct: 209 NLPVPLVFEIGRTELT-MAELADVVGGDIIAIERWHAHEQNLLCVGRVPAAPAWEITGRP 267

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
           +   +    +  +P   L  T   +  +   + + S             L V++   +  
Sbjct: 268 SGSRLTVERIREMP---LEPTRTDTPPATGAAHDASPADAPR---ALDGLAVDLRFELPP 321

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
               L ++  L+ G VI            L ANG  I +  L  VG+   +R+ 
Sbjct: 322 TSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 375


>gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 370

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 93/337 (27%), Gaps = 57/337 (16%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV-FSQASL 88
             + +   +G +            +   V I+        + ++   F   +V       
Sbjct: 32  EEQDVLGEIGNISFGTSATTLFTLLRNKVTITTPKVSIINWENLKKEFNIPYVGVEVEYT 91

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                N  +      V+ + + ++G     T  ++    LS + +    + I   S  L+
Sbjct: 92  EGIKGNNLLILKEQDVLRITDLMMGGDGNVTEGEITELHLSAIGEA-MNQMIGSASTSLS 150

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETL 206
             I  +   SP      D +          + +V  I   M +  +  S  + +IP    
Sbjct: 151 TLIGESINISPPRAFVVDFNKGLPENISFPDGYVVKIAFKMVVGEIIDSEIMQLIPIAFA 210

Query: 207 LK-------------TTLISLSSQNKS--------------------------------- 220
            +                     Q+                                   
Sbjct: 211 KRLVEQVMSKNVENSPKESFQGVQDDDIIKTGTKGINNEFSDEVKSTVKHKAEKVDVKPV 270

Query: 221 -------ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
                  E++              + +N+   +   K  +KD++ L  G +I        
Sbjct: 271 IFREFDDEDEPTTAEKENINLIMDIPLNVTVELGRTKKLIKDILELNEGSIIELDKLAGE 330

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              +  NGK I   E+  + +N+ +RI D +   ++ 
Sbjct: 331 PVDILVNGKFIAKGEVVVIDENFGVRILDIVKQSKRI 367


>gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 422

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/360 (10%), Positives = 91/360 (25%), Gaps = 78/360 (21%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
           T +     +G +            ++  V I+    +   ++ +   F +  V  +   L
Sbjct: 62  TEKDTVGEIGNISMGTAATTLSVLLNQKVSITTPRVEVTDYATLREEFPKPHVAVEVEYL 121

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHE--TIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                   +         +   ++G         ++    LS V +    + +   S  +
Sbjct: 122 EGLEGINVLILKQEDAKMIANLMMGGDGTDIAEGEIEEFHLSAVGEA-MNQMMGSASTSM 180

Query: 147 NQCIST-----------------------------TQESSPNLEDFYDIDYLKKNTNRLS 177
           +                                         + D  D + ++      +
Sbjct: 181 SDMFDKTINISPPSVKMLDLGSEEALEELPKEPMIKVAFDLKIGDLIDSEIMQLIPFEFA 240

Query: 178 NEFVTTINMNMTIENVASSFVLII-------------------PQETLLKTTL------- 211
            + V ++  +   E  A    +                     P+               
Sbjct: 241 KDMVVSLTGDSAEEVSAGQQEMAASSEGTAAAKPQAPTQTGPGPESGQSPEREVSTQGQP 300

Query: 212 ------ISLSSQNKSENQSEDLIDPFA-------------RKTYQLNVNIDTRINLKKTT 252
                      Q   ++       P                    + + +   +   K  
Sbjct: 301 TGQGEQQMKQEQQPKKDYQPVEFSPLEGHQSAAKGENSNIELIMDVPLEVTVELGQTKKK 360

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           +++++ L  G +I           +  NGK I   E+  + +N+ IRIT+ I+  ++  K
Sbjct: 361 IQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVVVIDENFGIRITEIISPVERINK 420


>gi|254454295|ref|ZP_05067732.1| Surface presentation of antigens protein [Octadecabacter
           antarcticus 238]
 gi|198268701|gb|EDY92971.1| Surface presentation of antigens protein [Octadecabacter
           antarcticus 238]
          Length = 330

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 88/303 (29%), Gaps = 15/303 (4%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
            ++PIL  +L              ++     ++ L +   +   L V +   S +     
Sbjct: 3   AINPILAQKLGLTQAPPVAQGAQPATPMRQMRRALGRAADKAAGLSVSVLGISEEDMDAE 62

Query: 72  HIIHSFKENFVFSQASLSSWSS-NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
            +I    E +V       S +           L   L+E     S    P    R ++ V
Sbjct: 63  SLIEGGPEGWVVLGLRDGSLAGLTGLFLLDQPLRSALVEMQTMGSL-LPPSDDQRRVTRV 121

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNM 188
           +  +     +Q+ A L +      +  P   D   ID L+         N  +  I + M
Sbjct: 122 DAVMTLPFASQVLAELAEVGFGAADLEPAAYDIGPIDDLRTAGLVMVQGNYRICRITIQM 181

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
                    ++ +                   ++ S            +    +D  +  
Sbjct: 182 GGGETQGEMLIAM--------RPKVSVVTAPVKDTSG-WSVALRDAVQEAPAELDAILTR 232

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITD-RINF 306
               +  +   ++GQV+           L+   G  I +  LG+V     +R+   R+  
Sbjct: 233 MTMPIHKLEGFEVGQVLNLAGTTVGSVTLTGPGGIIITTARLGQVAGKRAVRVQHSRVEL 292

Query: 307 DQK 309
              
Sbjct: 293 QDD 295


>gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae
           12198]
 gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae
           12198]
          Length = 279

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 93/247 (37%), Gaps = 16/247 (6%)

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
                 S  +   + ++  +    +L   L + ++G   E+   + +  L  +++ +   
Sbjct: 41  PPYVFISIEAKGDFGADLGMLMPIDLATALADTMVGGEGESKESVDDDDLDAIKE-INSN 99

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
               +S  LN       + S + ++   I   +       ++F    +   ++  + S F
Sbjct: 100 IFGALSTSLNSQ-KKLPKLSFSCKNVASITNEQDL-----SDFARVYDFAFSLNRIKSHF 153

Query: 198 VLIIPQETLLKTTLISLSSQN-KSENQSEDLIDPFARK-------TYQLNVNIDTRINLK 249
           +L+  +E     +     + + ++E          +++          + +N+  RI  K
Sbjct: 154 LLLCTKEFEENFSGKKEEASSPQTEEIDSAPGQNLSQEEMKNIGMLLDVKLNVKVRIGQK 213

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +  LKDV ++ IG VI           +  + K I   E+  V  N+ I++T+ I   ++
Sbjct: 214 RMLLKDVTSMDIGSVIELNQLANEPLEILIDDKVIAKGEVVIVDGNFGIQVTE-IGTKRQ 272

Query: 310 SLKNFLH 316
            L+    
Sbjct: 273 RLEQLRS 279


>gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter
           desulfuricans SSM1]
 gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter
           desulfuricans SSM1]
          Length = 292

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
               L K+      +  ++ DV+I  T   +G  S +  +F               + F 
Sbjct: 15  EFVDLVKENFGSSLQTVINRDVEIEITEFFTGFISDVYENFDNPVCVKGVETE-SGNEFG 73

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
           +  +   +  L++ ++    E+  +L +       K  AK  I QI + LN  +    + 
Sbjct: 74  LLFTIKDLTALVDYMMMGEGESKDELDDE-----TKDGAKELITQIVSSLNVPLKEKYDK 128

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSF---------VLIIPQETL 206
             N                  +E        ++  + + S F          +I      
Sbjct: 129 KFNFTVVDI-----FTEMSEEDEKEYAAYKFSIKADKIDSEFIFFIDSAFNSIIETSSEK 183

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                  +  +   E  S             + + +  +I   K  LKD++ L  G++I 
Sbjct: 184 TDDVPDFVPFEEGFEQNSSYDSGGNIDLLLDVEIPVSVKIGSTKMYLKDILELGPGKIIE 243

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                     L  N K I   E+  V   + +RI + ++  ++  K
Sbjct: 244 LEEYADEPVELLVNNKVIARGEVVVVDGYFGLRIQEIVSKAERIKK 289


>gi|326386953|ref|ZP_08208566.1| flagellar switch protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208562|gb|EGD59366.1| flagellar switch protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 295

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 87/284 (30%), Gaps = 12/284 (4%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKE 79
           L     +K  + +  +       + L             +++  + +           + 
Sbjct: 20  LLRPGPEKADVLQALARAADRMARTLRGAMARLCGGYPPEVAIAAPREIGIEEFQS--EG 77

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
              +S  S+               V+ L++   G   E   +   R L    + + +R  
Sbjct: 78  LTAYSIYSVLPGLDRLASAIDGEAVLRLVDRTFGGPGEAP-RPMPRELPMSAELMVQRIE 136

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFV 198
             +S  L + +  +    P          L +     S   +  + + ++  +       
Sbjct: 137 TILSEELGRALGGSHAIRP----LRRDRDLAQLQPFASATRLALLEITISEGSREPWPIR 192

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           L++P E L   T +       +  ++    DP A     + + +   +   +  L+ V T
Sbjct: 193 LVLPVEALSSLTGMGAQPATSTT-RAPAKGDPLAEPYGAMPLPVTALLVDTRVPLRTVST 251

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           L +GQV+           L   G+ +    +G V     I IT 
Sbjct: 252 LAVGQVLML--PIARSVPLVVGGQTVGHGAIGAVDDRVAIEITH 293


>gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267]
 gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267]
          Length = 277

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 90/241 (37%), Gaps = 8/241 (3%)

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
               V +       ++   +  +  L+  + E +LG          N +LS  E   AK 
Sbjct: 42  PPLVVANVTVGGDVTAKMMLVATPVLMSAIGEWMLG----EEEISRNENLSEDELDAAKE 97

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
             + I    +  +   +       +   +++L ++ N   + F      ++ I +V+   
Sbjct: 98  VFSNILGAFSTSLGAQKGMPKLNFEVAKVNFLDESANLDVSAFEKIYIYSVKIGDVSEHI 157

Query: 198 VLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLK 254
            +++    +         S+Q  +  +S+ + +          + + +  RI  K+  LK
Sbjct: 158 AVVLDFALVKFLNKDQKESAQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLK 217

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           DV+T+ IG VI           +  + K +   E+  V  N+ I+IT  I   ++ L+  
Sbjct: 218 DVLTMDIGSVIELNQLANDPLEILISDKVVALGEVVIVDGNFGIQITQ-IGTKKERLEQL 276

Query: 315 L 315
            
Sbjct: 277 R 277


>gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 372

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 92/339 (27%), Gaps = 59/339 (17%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
             + +   +G +            +   V I+        +  +   F   +V  +    
Sbjct: 32  EEQDVLGEIGNISFGTSATTLFTLLRNKVTITTPKVSIVNWESLKKEFNIPYVAVEVEYT 91

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                N  +      V+ + + ++G     T  ++    LS + +    + I   S  L+
Sbjct: 92  EGIKGNNLLILKEQDVLRITDLMMGGDGNVTEGEITELHLSAIGEA-MNQMIGSASTSLS 150

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETL 206
             I  +   SP      D +             +  +   M + ++  S  + +IP    
Sbjct: 151 TLIGESINISPPKAFIVDFNKGLPGDISFPEGDIVKVAFKMVVGDIIDSEIMQLIPISFA 210

Query: 207 LKTTLISLSSQ-------------------NKSENQSEDLIDPFARK------------- 234
            K     +S                       +     D  +    +             
Sbjct: 211 KKLVEQVMSKNVENSPKGSFQDVNDDDIINTGTAGIKNDFNEEIRHEEQISQPKSRKVDV 270

Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                                     + + +   +   +  +KD++ L  G +I      
Sbjct: 271 KPVVFKELDADEQTVSEKENINLIMDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLA 330

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  NGK I   E+  + +N+ +RI D +   ++ 
Sbjct: 331 GEPVDILVNGKFIAKGEVVVIDENFGVRILDIVKQSKRI 369


>gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 279

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 21/278 (7%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVIT 106
               +  +    ++S+   Q GK      S          S    SS  F   S  +   
Sbjct: 14  TATIEGLLGQTPEVSHIEAQDGK----SDSINPPMAKIDISTDDGSSLAFF-ISPKVATA 68

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG   E+   +    L        K   + I   ++  +   +E         +I
Sbjct: 69  LADMMLGGEGESKETMEADDLDAT-----KEIASNIFGAISTSLGGQKELPKLSFSISNI 123

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
           +++      L N        +  I +V                   +  +  +S   + +
Sbjct: 124 NFIPDGDLGLGNYSGF-YTFSFNIGSVQDYLYFGFSSAFENHFNPNANQALEESSTGNGE 182

Query: 227 LIDPFA---------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
                               + + +  RI  KK  LKDV+ + IG V+           +
Sbjct: 183 AQAKVELNNAEMKNMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEV 242

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
             + K I   E+  V  N+ I+IT+ I   +  L   +
Sbjct: 243 LVDDKVIAKGEVVIVDGNFGIQITE-IAPKKDRLDQLM 279


>gi|57168741|ref|ZP_00367872.1| fliY protein (fliY) [Campylobacter coli RM2228]
 gi|305432517|ref|ZP_07401679.1| flagellar motor switch protein [Campylobacter coli JV20]
 gi|57019788|gb|EAL56471.1| fliY protein (fliY) [Campylobacter coli RM2228]
 gi|304444556|gb|EFM37207.1| flagellar motor switch protein [Campylobacter coli JV20]
          Length = 278

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 92/279 (32%), Gaps = 22/279 (7%)

Query: 50  FKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
           F  +    ++ ++  S +  ++         + K   V++  ++        I     L+
Sbjct: 9   FTNECTSTIEGLTGKSAEFSEYKEFDVSSQDTLKPPLVYAVFNIKE-GGKIGILAGAVLM 67

Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
             + E ++G    +             K+  +  I+  S  L        +    +    
Sbjct: 68  SAIGEWMMGEEEISKNDQLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFEISSCE 126

Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224
            +       N    +F      ++ IE++     LI+ Q TL        +    + + S
Sbjct: 127 FV-----AENVDFKDFTKLYFFDVKIEDLEEQISLIVDQ-TLHNILSGKAADDGHAHSSS 180

Query: 225 EDLIDPFA--------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                 F              + + +  RI  KK  LKDV+T+ IG V+           
Sbjct: 181 NSENKGFEISEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLE 240

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +    K I   E+  V  N+ ++IT+ I   ++ L+   
Sbjct: 241 ILIGDKRIAYGEVVIVDGNFGVQITE-IGSKKERLEQLR 278


>gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC
           49179]
 gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC
           49179]
          Length = 292

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 86/301 (28%), Gaps = 32/301 (10%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
           +      L+ +         +     I   +         I  F E+           + 
Sbjct: 1   MIEDFLKLFVQECTSTLGGLLGKTPAIELKN--EISVGDFI--FIEHASVVVQVKPQTNV 56

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              +     +   L + ++G    +   L    L  +     K   + I   L   +   
Sbjct: 57  TITLAVPVPMATALADLMVGGEGTSKQTLEKDDLDAI-----KEIGSNIFGALTTALQAQ 111

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-------------I 200
           +       +  +    +  +                +E V SSF +             +
Sbjct: 112 EVIPKLSFEVSEAVDAQDASLLDPYSDGYE--FGFELEQVKSSFFIFCGGVFIDLFKKKV 169

Query: 201 IPQETLLK----TTLISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTL 253
            PQ T       +         +       L    AR       + +N+  RI  KK  L
Sbjct: 170 APQNTSKPRNAPSMPNLPVVPTERTESDGHLEQLEARNINMLLDIKLNVRVRIGQKKMIL 229

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           KDVV++ IG VI           +  + K I   E+  V  N+ I+ITD I   +  L+ 
Sbjct: 230 KDVVSMDIGSVIELNQMVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGSKRDRLEQ 288

Query: 314 F 314
            
Sbjct: 289 L 289


>gi|157850891|gb|ABV90252.1| flagellar motor switch protein [Bacillus subtilis subsp. sadata]
          Length = 110

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 206 LLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           L             Q+       +      ++     + +   +   + T+++ ++L++G
Sbjct: 1   LEPLIPKLSVHYWMQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVG 60

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309
             I           +    K  +  + GRV +   ++I D  I  +Q 
Sbjct: 61  DCITLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQAVQILDHDIRGEQD 108


>gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
           aurantiaca DW4/3-1]
          Length = 441

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 84/274 (30%), Gaps = 17/274 (6%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102
            + L    K   D +  ++  S Q   F  +     +    +  +  +      +     
Sbjct: 61  AEPLYARLKALFDAESRVNLVSVQIRPFQELQRYLGDPSFLAVLAPGALKERVVLEVELP 120

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           L   L++ LLG   ET   +  R L+ +E+ +    + +    L   +  +         
Sbjct: 121 LAHNLVDMLLGGVGET---VGLRPLTDIEEGVMSFVVLEALKALAPALDPSLPKLRLETV 177

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-LKTTLISLSSQNKSE 221
               +  +        + V  I++N ++        L+IP   +       + + +    
Sbjct: 178 ARGAE--EVADRLGEEDRVVVIHLNASLGPHTGLVRLVIPTGVVGAAELAQAAAERRSQV 235

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-------LHREKTC 274
           N    L          +   +   I   +   +D+  +++  V+            E+  
Sbjct: 236 NTDLQLNRWM---LSTVRTWLRAEIGQAEIASQDLAYIRVKDVVLLDALTARPDRGEEGT 292

Query: 275 AILSAN-GKEIYSCELGRVGKNYTIRITDRINFD 307
           A+L    G      E+      Y  R+T  +  +
Sbjct: 293 AVLRVGMGSSRVEAEVFLEDGQYKARVTSIVIGE 326



 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           SS+++ ++         +     + + I   +     T  +VV+L++G V+         
Sbjct: 351 SSESEGQSLDTMNKSEGSDLLADIPLQIAVELARVPVTADEVVSLRVGHVLELHRSPGEP 410

Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300
             LS NGK +   EL  V     +R+
Sbjct: 411 VELSVNGKVVARGELVEVEGQLGVRV 436


>gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC
           51449]
 gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449]
          Length = 278

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 20/274 (7%)

Query: 50  FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLL 108
            +  M     +S+T   S      + +    +  S   +    +    +     +   L 
Sbjct: 16  IEGLMGKTPSVSHTQDDSVS----LENLPTPYAISYIQASGDGNGEIAMVIPVEMGTALA 71

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           + +LG   E   ++ +  L  +++ ++      +S  LN   +   + +    +   I  
Sbjct: 72  DMMLGGEGEVKSEMSDDDLDAIKE-ISSNIFGAVSTSLNSQ-NELPKLNFTCSNIEFIT- 128

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228
                N   + F      N T++++ S+F ++  +  +      + S+Q      +    
Sbjct: 129 ----ENMDLSRFDKAYIFNFTLDSIQSNFTILANKSFVELFEGGNTSAQAAPAESAAQTN 184

Query: 229 DPFA-------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
              +            + +N+  RI  K+  LKDV+ + IG VI           +  + 
Sbjct: 185 PALSATEYKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEILVDD 244

Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           K I   E+  V  N+ I+ITD I   +  L+   
Sbjct: 245 KVIAKGEVVIVDGNFGIQITD-IGTKRDRLEQLR 277


>gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM
           1251]
 gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251]
          Length = 283

 Score = 96.2 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 86/249 (34%), Gaps = 15/249 (6%)

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
                + + +     +S+  +  +  LV +L + ++G        +    L        K
Sbjct: 41  VPPIVLLNVSVSGDTNSSAMLALTPRLVASLSDMMMGEDQSNREDVSEDDLDAA-----K 95

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
              + I   ++  +   +E      +  +I+Y+ +N +     +      +  I    S 
Sbjct: 96  EIASNIFGAISNSLGAQKELPKLSFNIDNIEYIDENKDVSLENYSKMFVYHFVIGETNSL 155

Query: 197 FVLIIPQ--ETLLKTTLISLSSQNKSENQSEDLIDPFARK-------TYQLNVNIDTRIN 247
            +LI+ +    +L     +L    K+E+         +            + + +  RI 
Sbjct: 156 LMLIMDENLSNILFQKDKTLGDDRKNESNKNSATVSLSSDEMSNIALIMDVKLPVKVRIG 215

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            KK  LKDV+ + IG VI           +  +   I   E+  V  N+ ++IT  I   
Sbjct: 216 KKKMLLKDVLNMDIGSVIELNQLANDPLDILVDDNVIAEGEVVIVDGNFGVQITS-IGTK 274

Query: 308 QKSLKNFLH 316
           ++ L     
Sbjct: 275 RERLNQLKS 283


>gi|57241941|ref|ZP_00369881.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195]
 gi|57017133|gb|EAL53914.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195]
          Length = 279

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 97/279 (34%), Gaps = 21/279 (7%)

Query: 50  FKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
           F  +    ++ ++  S +  ++         + K   V+    +S       I     L+
Sbjct: 9   FTNECVSTIEGLTGKSAEFSEYKEFDVSASDTLKPPLVYVNFGVS-SGGRIGILAGAVLM 67

Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
             + E ++G    T             K+  +  I+  +  L        +   +L    
Sbjct: 68  SAIGEWMMGEEKITKNDKLGADEMDAAKEAIQNIISAFTTSLG-AQKELPKMEFSLSSCE 126

Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSE 221
            I+      +    +FV   N ++ I+ +     L +     +TL K+       +  + 
Sbjct: 127 FIE-----ESIDLKDFVKLYNYDIKIDGLEEQISLAMDDKLYKTLTKSGDAKAQQKEGAI 181

Query: 222 NQSEDLI---DPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +  E ++   +          + + +  RI  KK  LKDV+T+ IG V+           
Sbjct: 182 SSGEAMMMLGEGLKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLE 241

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +    K I   E+  V  N+ ++IT+ I   ++ L+   
Sbjct: 242 ILIGDKRIAYGEVVIVDGNFGVQITE-IGTKKERLEQLR 279


>gi|254477766|ref|ZP_05091152.1| Surface presentation of antigens protein [Ruegeria sp. R11]
 gi|214032009|gb|EEB72844.1| Surface presentation of antigens protein [Ruegeria sp. R11]
          Length = 448

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 17/291 (5%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           ++AR      + K     SS      ++ + +   +  DL V +      +     +   
Sbjct: 16  VIARKLAATKEGKG-ALTSSLTLKALRRSIARAAADLCDLPVAVLAARQANRVPEDLAAH 74

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +                    LV  L++               R  +  +  +  
Sbjct: 75  LSDKHLLVVLD-GPAGRIGAATLDAPLVTALIQQQTMGQVLGKA-PSERHYTPTDAAMVA 132

Query: 137 RTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI--EN 192
             + +    +   +S  ++            ++ ++     L  E    I++ + +    
Sbjct: 133 DFLERTFGKVVSMLSGQKDEVIFSGYRFGAQVENVRSLVLGLEAEDYRLIDLTVDLACGA 192

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           +  +  LI+P+ T                N S+            +   +   +   +  
Sbjct: 193 MQGNMTLILPEPTAEDL---------GKANGSQHAGPSLGSNLGAMRAELQAVLCKMRVP 243

Query: 253 LKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                +L  G ++P          +++ +G+ I    LG++     +R+TD
Sbjct: 244 ANAFTSLAKGDLLPLDQAYLYETEMVAISGQVIAQGRLGQMNGARAVRLTD 294


>gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
 gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
 gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
          Length = 278

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 20/286 (6%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
              L  +      +  M     +++TS  +    ++  S   +  + QAS    S    +
Sbjct: 4   FIDLIVQEATATIEGLMGKTPSVTHTSDSNVSLENL--SIPYSISYIQASGDG-SGELAM 60

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
                +   L + +LG   E+ P++    L  +++ ++      IS  LN       + +
Sbjct: 61  IIPVAMATALADMMLGGEGESKPEMSEDDLDAIKE-ISANIFGAISTSLNSQ-KELPKLN 118

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI--------IPQETLLKT 209
            +  +   +       +   + F      N +++++ S+F ++                 
Sbjct: 119 FSCSNIEFVT-----QSIELSRFDKAYIFNFSLDSIQSNFTILANASFVGLFEGGAATPV 173

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                 S   +   S             + +N+  RI  K+  LKDV+ + IG VI    
Sbjct: 174 AHAESGSTPVAHALSPTEFKNINM-ILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQ 232

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
                  +  + K I   E+  V  N+ I+ITD I   +  L+   
Sbjct: 233 LANDPLDILVDDKVIAKGEVVIVDGNFGIQITD-IGTKRDRLEQLR 277


>gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str.
           Eklund 17B]
          Length = 385

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/346 (8%), Positives = 99/346 (28%), Gaps = 64/346 (18%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90
           + +   +G +          + ++ +V+I+           +  SF+   +         
Sbjct: 42  KDLLGEIGNISMGSASTALYQIINQNVNITTPVVSLTTLKDMKASFETPNIILDVEYTEG 101

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQC 149
                 +    +    +   ++G   +         +  +  ++   + I   +  +   
Sbjct: 102 IIGRNILVMRTDDAAVIANLMMGGDGKVPENPELSEIEVSAVQEAMNQMIGSAATSMATM 161

Query: 150 ISTTQE---------------SSPNLEDFYDIDYLKK------------NTNRLSNEFVT 182
            S   +                +  L +  +I  +                    N    
Sbjct: 162 FSRRVDISPPTSKLWKEKDEPITETLSEDEEIVRVSFRLIIGDLVDSNIMQILPLNTAKK 221

Query: 183 TINMNMTIENVASSFV---------------------------------LIIPQETLLKT 209
            +++ M  E+ ++  +                                 ++   +     
Sbjct: 222 IVSIMMGEEDASTEAIESAKVVEEKPRVQATNQKVNVHEQVQTTIKAKPIVEAPKVQEPI 281

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +   + +      +  +          + ++I   +   K ++KD++ L  G +I    
Sbjct: 282 EVHEAAFETLVPGDTSQVPKNI-DLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDK 340

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
             +    +  NGK+I   E+  V +N+ +RIT  ++ + + +K+  
Sbjct: 341 LAEEPVEILVNGKKIAYGEVVVVDENFGVRITSIVS-NAERIKSLR 385


>gi|167464155|ref|ZP_02329244.1| flagellar motor switch protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382381|ref|ZP_08056288.1| flagellar motor switching and energizing phosphatase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153734|gb|EFX46109.1| flagellar motor switching and energizing phosphatase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 415

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/298 (10%), Positives = 78/298 (26%), Gaps = 48/298 (16%)

Query: 35  SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
            S++     + +           +  V+IS       + S    +  +  VF + S    
Sbjct: 144 LSAVQEAMNQMMGSSATSMSIIFNRLVNISPPGIDIMRLSEGEGNLPDEDVFIKISFRLT 203

Query: 92  SS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                          +    ++ N+LG              +  E++             
Sbjct: 204 IGDLIDSTIMQLLPVDFSKEMVSNMLG------------EGTQTEEET------------ 239

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
              ++   E + +     + +          +             +   S  L  P    
Sbjct: 240 AAALTMEPELTSSASIPEEKEVQPPMPASQHDYT--QAPPARQQPHEGGSAYLASPAYKE 297

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFA------------RKTYQLNVNIDTRINLKKTTLK 254
                 S     ++ N                           + + +   +      +K
Sbjct: 298 EP--AASSGMMQRNVNVQPVQFSNLQAGGYAQADETNLNLLLDIPLKVTVELGRTNKMIK 355

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           D++ L+ G ++           +  N K I   E+  + +N+ +R+TD ++   +  K
Sbjct: 356 DILELQQGSIVELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVTDIVSQFDRIQK 413



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 71/230 (30%), Gaps = 15/230 (6%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           +  S   P +   L+G   D          +G +            +   V+I+      
Sbjct: 29  EGGSSYSPAVEDFLSGLEQDA------LGEIGNITFGSAATALSTLLGKKVEITTPKVSV 82

Query: 68  GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
                +++ F +         +  +     +    +    + + ++G          +  
Sbjct: 83  IAREDLVNEFSKPHVAVHVKYVDGFHGINLLVIKRSDAQVIADLMMGGDGHPETDELSEI 142

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV-TTIN 185
             +  ++   + +   +  ++   +     SP   D   +   + N   L +E V   I+
Sbjct: 143 HLSAVQEAMNQMMGSSATSMSIIFNRLVNISPPGIDIMRLSEGEGN---LPDEDVFIKIS 199

Query: 186 MNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
             +TI + + S+ + ++P +    +  +  +   +     E+       +
Sbjct: 200 FRLTIGDLIDSTIMQLLPVDF---SKEMVSNMLGEGTQTEEETAAALTME 246


>gi|114766080|ref|ZP_01445089.1| possible flagellar switch protein FliM [Pelagibaca bermudensis
           HTCC2601]
 gi|114541635|gb|EAU44676.1| possible flagellar switch protein FliM [Roseovarius sp. HTCC2601]
          Length = 396

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/298 (10%), Positives = 82/298 (27%), Gaps = 24/298 (8%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT--SCQSGKF 70
             P     +  +          + S+     K L +      D+  D++      +    
Sbjct: 2   GDPARQDEVLAQKASAARRALEARSMSP--SKALRRALSRTADVLWDLALVTHGVEQAHL 59

Query: 71  SH--IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
               ++ +   + +                    ++  L+E         +P +  R L+
Sbjct: 60  DQDGVVAALGGDALLILLD-GPDGVPGVARIERPVMTGLIEVQTILQVTQMP-VEERPLT 117

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-----LSNEFVTT 183
             +  +    +        + +       P +  F     ++ +         S      
Sbjct: 118 QTDAAMMAPLLDSALERFERYLED-HPLQPQIAGFRFGAMVEDSRTAGLLLDASGYRAFR 176

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
           +++++ +        L +P     +    +         +         +K   L V++D
Sbjct: 177 VSLDLALGRRTGELALFLP----DRAEAAAADEAGDLGQEGPH-----EQKMKLLPVHMD 227

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN-GKEIYSCELGRVGKNYTIRI 300
             ++     L     L+ G +IP          L A  G  +    LG++     +R+
Sbjct: 228 AVLHRLVLPLSAAEKLQPGDLIPLPPEALDGVELLAGDGSGVAGGRLGQINGMRAVRL 285


>gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 398

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/354 (11%), Positives = 92/354 (25%), Gaps = 74/354 (20%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSS 90
           +     +G +            +   V I+           +   +   F+    +    
Sbjct: 44  KDTLGEVGNISMGTAATTLSTLLRKKVSITTPDVSVTNPEELQLLYPLPFLVVEVSYTQG 103

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIP--QLYNRSLSTVEKKLAKRT---------- 138
            +    +         + + ++G    +     L +  LS V + + +            
Sbjct: 104 VTGTNVLVIKEEDAAIIADLMMGGDGLSAEGKNLGDLELSAVGEAMNQMMGSATTSLSSM 163

Query: 139 ----------------IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN--EF 180
                           + +    L+       +    +E   ++   +          E 
Sbjct: 164 FNQRIDIAPPQLTVIDMGKEFLQLSTSFDDVVKIKFKME-IENLINSEIMQIIPMEAVEN 222

Query: 181 VTTINMNMTIENVASSFVLIIP----------------------------------QETL 206
           + +I +  T E  ++  V+  P                                  Q  +
Sbjct: 223 IMSILLGSTAEESSAEAVMEEPLVGMPLPETKAAAVAAPRQAETAISPPPQEPIYGQAFV 282

Query: 207 LKTTLISLSSQ--------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
                +S   Q           +  +             + +++   +   K T+ +++ 
Sbjct: 283 QSPREMSNRPQFAVQPVQFAPLQESNMLHSPQNLDLIMDVPLDVSVELGKTKKTIGEILE 342

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           L  G +I           L  NGK I   E+  + +NY IRIT  I+   +  K
Sbjct: 343 LNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDENYGIRITTIISPIDRMNK 396


>gi|153951920|ref|YP_001397324.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939366|gb|ABS44107.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 273

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 21/265 (7%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++   +++      I     L+  + E ++G    T 
Sbjct: 17  SAEFSEYKEFDVNASDTLKAPLVYAIFDIAN-GGKIGILAGTVLMSAIGEWMMGEEEITK 75

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 76  NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 129

Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
           F      ++ I ++     L + Q    +L        + +   N + +       +   
Sbjct: 130 FKKLFLYDVKIGDLEEQISLAMDQTLHNILSGKPAETGNASADSNHNAEEKAIMLSEELK 189

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+ 
Sbjct: 190 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 249

Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
            V  N+ ++IT+ I   ++ L+   
Sbjct: 250 IVDGNFGVQITE-IGSKKERLEQLR 273


>gi|315123664|ref|YP_004065668.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017386|gb|ADT65479.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 280

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 21/265 (7%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++   +++      I     L+  + E ++G    T 
Sbjct: 24  SAEFSEYKEFDVNTSDTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 83  NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136

Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
           F      ++ I ++     L + Q    +L        + +   N + +       +   
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELK 196

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+ 
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256

Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
            V  N+ ++IT+ I   ++ L+   
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280


>gi|88597660|ref|ZP_01100893.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88189964|gb|EAQ93940.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 280

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++  ++++      I     L+  + E ++G    T 
Sbjct: 24  SAEFSEYKEFDVNTSDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 83  NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136

Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
           F      ++ I ++     L + Q    +L        + +   N + +       +   
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+ 
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256

Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
            V  N+ ++IT+ I   ++ L+   
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280


>gi|283955503|ref|ZP_06372998.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792964|gb|EFC31738.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 280

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 21/265 (7%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++   +++      I     L+  + E ++G    T 
Sbjct: 24  SAEFSEYKEFDVNASDTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 83  NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136

Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
           F      ++ I ++     L + Q    +L        + +   N + +       +   
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELK 196

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+ 
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256

Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
            V  N+ ++IT+ I   ++ L+   
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280


>gi|163736146|ref|ZP_02143565.1| surface presentation of antigens (SPOA) protein [Phaeobacter
           gallaeciensis BS107]
 gi|161390016|gb|EDQ14366.1| surface presentation of antigens (SPOA) protein [Phaeobacter
           gallaeciensis BS107]
          Length = 460

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 85/291 (29%), Gaps = 16/291 (5%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           +LAR      + K     SS      ++ + +   +  DL V +      +     +   
Sbjct: 16  VLARKLAATKEGKG-GLTSSLTLKALRRSIARAAADLCDLPVAVLAARQANRIPEDLPPH 74

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +       +             V  L++               R+ +  +  +  
Sbjct: 75  LSDKHLLVVLDGPNGR-IGAATLDAPTVTALIQQQTMGQVLGKA-PSERNYTPTDAAMVA 132

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIEN 192
             + +  A +   ++  ++ +      +        +        +  V  + +++    
Sbjct: 133 DFLERTFAKVVSMLAQQKDEAIFSGYRFGAQVEDVRSLVLGLEAEDYRVIELTLDLACGA 192

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           +     LI+P+ +             ++   +             +   +   +   K  
Sbjct: 193 MQGGLTLILPEPSPEDL--------GEAGQNAHQAGPSLGSNMGSMRAELRAVLCRMKVP 244

Query: 253 LKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             +   L+ G ++P          ++S +G+ I    LG++     +R+TD
Sbjct: 245 ANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAVRLTD 295


>gi|163741324|ref|ZP_02148716.1| hypothetical protein RG210_17730 [Phaeobacter gallaeciensis 2.10]
 gi|161385677|gb|EDQ10054.1| hypothetical protein RG210_17730 [Phaeobacter gallaeciensis 2.10]
          Length = 460

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 85/291 (29%), Gaps = 16/291 (5%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           +LAR      + K     SS      ++ + +   +  DL V +      +     +   
Sbjct: 16  VLARKLAATKEGKG-GLTSSLTLKALRRSIARAAADLCDLPVAVLAARQANRIPEDLPPH 74

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +       +             V  L++               R+ +  +  +  
Sbjct: 75  LSDKHLLVVLDGPNGR-IGAATLDAPTVTALIQQQTMGQVLGKA-PSERNYTPTDAAMVA 132

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIEN 192
             + +  A +   ++  ++ +      +        +        +  V  + +++    
Sbjct: 133 DFLERTFAKVVSMLAQQKDEAIFSGYRFGAQVEDVRSLVLGLEAEDYRVIELTLDLACGA 192

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           +     LI+P+ +             ++   +             +   +   +   K  
Sbjct: 193 MQGGLTLILPEPSPEDL--------GEAGQNAHQAGPSLGSNMGSMRAELRAVLCRMKVP 244

Query: 253 LKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             +   L+ G ++P          ++S +G+ I    LG++     +R+TD
Sbjct: 245 ANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAVRLTD 295


>gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92]
 gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein
           [Campylobacter curvus 525.92]
          Length = 286

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 104/289 (35%), Gaps = 28/289 (9%)

Query: 46  LPKIFKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFS-QASLSSWSSNFFIGC 99
              +F  ++   V+ ++  + + G+ +       +  K   V +        ++   I C
Sbjct: 5   FFNLFTNELKATVEGLTGRTPEVGERNDFDAPTQNGIKPPVVMASVMLSGDVNAKAEIVC 64

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +  LV  + E ++G          N +L   E   AK   + + +  +  +   +   P 
Sbjct: 65  TPVLVSAISEWMMG----EEEISRNEALGADELDAAKEIFSNLLSAFSTSLGAQKGM-PK 119

Query: 160 LEDFYDIDYLKKNTNRLSNEFVT---TINMNMTIENVASSFVLIIPQETL---LKTTLIS 213
           +   ++I  +       + +F         ++ IE++      +     +     T +  
Sbjct: 120 IS--FEIVNVNFLDENSALDFSVYEKLFLFSVKIEDINEHIGFVCDHTLMKFFEPTKVGE 177

Query: 214 LSSQNKSE------NQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             SQ+  +      ++SE   +          + + I  RI  K+  LKDV+++ IG VI
Sbjct: 178 SESQSGDQAKATHGSRSEFSAEEMRNINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVI 237

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                      +    K I   E+  +  N+ I+IT  I   ++ L+  
Sbjct: 238 ELNQLANDPLEILIGDKVIALGEVVIIDGNFGIQITQ-IGSKRERLQQL 285


>gi|148926865|ref|ZP_01810543.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|167004760|ref|ZP_02270518.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|205356442|ref|ZP_03223206.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|145844442|gb|EDK21550.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|205345629|gb|EDZ32268.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|315057500|gb|ADT71829.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 280

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++  ++++      I     L+  + E ++G    T 
Sbjct: 24  SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 83  NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136

Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
           F      ++ I ++     L + Q    +L        + +   N + +       +   
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+ 
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256

Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
            V  N+ ++IT+ I   ++ L+   
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280


>gi|57237069|ref|YP_178081.1| flagellar motor switch protein FliY [Campylobacter jejuni RM1221]
 gi|121612924|ref|YP_999785.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|57165873|gb|AAW34652.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
 gi|121504209|gb|EAQ71980.2| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 273

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++  ++++      I     L+  + E ++G    T 
Sbjct: 17  SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 75

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 76  NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 129

Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
           F      ++ I ++     L + Q    +L        + +   N + +       +   
Sbjct: 130 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 189

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+ 
Sbjct: 190 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 249

Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
            V  N+ ++IT+ I   ++ L+   
Sbjct: 250 IVDGNFGVQITE-IGSKKERLEQLR 273


>gi|86151260|ref|ZP_01069475.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841607|gb|EAQ58854.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 280

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 88/266 (33%), Gaps = 23/266 (8%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++   +++      I     L+  + E ++G    T 
Sbjct: 24  SAEFSEYKEFDVNTSDTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 83  NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP----FARK- 234
           F      ++ I ++     L + Q TL        +    +   S    +      + + 
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQ-TLHNILSGKPAETGNTSTDSNHNAEEKAIILSEEL 195

Query: 235 -----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
                   + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+
Sbjct: 196 KNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEV 255

Query: 290 GRVGKNYTIRITDRINFDQKSLKNFL 315
             V  N+ ++IT+ I   ++ L+   
Sbjct: 256 VIVDGNFGVQITE-IGSKKERLEQLR 280


>gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
 gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
 gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
 gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
          Length = 293

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 89/303 (29%), Gaps = 31/303 (10%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
           +      L+ +         +    +++  S         I  F  N   +   ++  + 
Sbjct: 1   MIDDFLKLFTQEFISTIGGLLGKVPEVALKS--EISVGDFI--FVNNASINV-HIADTNL 55

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              +     +   L + ++G   ++   L    L  +     K   + +   L   + + 
Sbjct: 56  TITLAIPIPMATALADLMVGGEGKSKETLEPDDLDAI-----KEIGSNVFGALTTALKSQ 110

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF----VLIIPQETLLKT 209
           +       +     +    +           + ++     +       + I   +     
Sbjct: 111 EVLPKLSFEIEGAVFAHDASLLDPYSDGFEFSFSLDQIQSSFFIFCGGLFIETFKKKEVI 170

Query: 210 TLISLSSQNKS--------------ENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTL 253
             IS   Q  +              +                  + +N+  RI  KK  L
Sbjct: 171 KNISKPIQGPAMPNIPVVQHNNDHVDGDHPLEQTEIRNINMLLDIKLNVRVRIGQKKMIL 230

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           KDVV++ IG V+           +  + K I   E+  V  N+ I+IT+ I   ++ L+ 
Sbjct: 231 KDVVSMDIGSVVELNQMVNDPLEILVDDKVIAKGEVVIVDGNFGIQITE-IGTKKERLEQ 289

Query: 314 FLH 316
             +
Sbjct: 290 LKN 292


>gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277]
 gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277]
          Length = 277

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 89/241 (36%), Gaps = 8/241 (3%)

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
               V + A     ++   +  +  L+  + E +LG          N +LS  E   AK 
Sbjct: 42  PPLAVANIAVSGDTTAKMILVATPVLMSAIGEWMLG----EEEISRNENLSEDELDAAKE 97

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
             + I    +  +   +       +   +++L ++ N   N F      ++ I +V+   
Sbjct: 98  VFSNIMGAFSTSLGAQKGMPKLNFEVAKVNFLDESANFDLNAFEKIYVYSVKIGDVSEQI 157

Query: 198 VLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLK 254
            +++    +          +Q  +  + +  I+          + + +  RI  K+  LK
Sbjct: 158 AVVLDFALVKFLNKDHKEPAQQATPAKGDLSIEEMRNIGLIMDVCLPLHVRIGSKRMLLK 217

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           DV+T+ IG VI           +  + K +   E+  V  N+ I+IT  I   ++ L+  
Sbjct: 218 DVLTMDIGSVIELNQLANDPLEILISDKVVALGEVVIVDGNFGIQITQ-IGTKKERLEQL 276

Query: 315 L 315
            
Sbjct: 277 R 277


>gi|315638333|ref|ZP_07893513.1| flagellar motor switch protein [Campylobacter upsaliensis JV21]
 gi|315481600|gb|EFU72224.1| flagellar motor switch protein [Campylobacter upsaliensis JV21]
          Length = 281

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 98/281 (34%), Gaps = 23/281 (8%)

Query: 50  FKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
           F  +    ++ ++  S +  ++         + K   V+    +S       I     L+
Sbjct: 9   FTNECVSTIEGLTGKSAEFSEYKEFDVGASDTLKPPLVYVNFGVS-SGGRVGILAGAVLM 67

Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
             + E ++G    T             K+  +  I+  +  L        +   +L    
Sbjct: 68  SAIGEWMMGEEEITKNDKLGADEMDAAKEAIQNIISAFTTSLG-AQKELPKMEFSLSSCE 126

Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSE 221
            I+      +    +FV   N ++ IE++     L++     +TL K+     ++Q K  
Sbjct: 127 FIE-----ESIDLKDFVKLYNYDIKIEDLEEQISLVMDDKFYKTLTKSGDDEATTQQKEG 181

Query: 222 NQSEDLI-----DPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
             S         +          + + +  RI  KK  LKDV+T+ IG V+         
Sbjct: 182 AVSSGEAMMTLGEGLKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDP 241

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
             +    K I   E+  V  N+ ++IT+ I   ++ L+   
Sbjct: 242 LEILIGDKRIAYGEVVIVDGNFGVQITE-IGTKKERLEQLR 281


>gi|157414373|ref|YP_001481629.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385337|gb|ABV51652.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|315931623|gb|EFV10588.1| Flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 280

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++  ++++      I     L+  + E ++G    T 
Sbjct: 24  SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 83  NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136

Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
           F      ++ I ++     L + Q    +L        + +   N + +       +   
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELK 196

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+ 
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256

Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
            V  N+ ++IT+ I   ++ L+   
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280


>gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 276

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 7/236 (2%)

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            V +       +       +  L+  + + +LG          N ++   E   +K   +
Sbjct: 45  VVANINVSGDINGKIIFIATPLLITAINDLMLG----EEEPTKNLNIGDDELDASKEIFS 100

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
            I + ++  ++  ++      +   + YL +N     + +       +T+ ++     L+
Sbjct: 101 NILSAISTSLTAAKDMPKLSFEIQKVVYLDENQILDLSSYEKLFLCPVTMGDINEHIGLV 160

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVT 258
           I                 +  +   D+ +          + + I  RI  KK  LKDV++
Sbjct: 161 IDFAFNKYFNKSDEKHTKEIPHLKADITEEIKNIGLIMDVRLPIRVRIGSKKMLLKDVLS 220

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           + IG VI           +    K++   E+  V  N+ ++IT+ I   ++ L+  
Sbjct: 221 MDIGSVIELNQLANDPLEVLIGDKQVALGEVVIVDGNFGVQITE-IGTKKERLEQL 275


>gi|86149628|ref|ZP_01067858.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|218561744|ref|YP_002343523.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839896|gb|EAQ57155.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112359450|emb|CAL34233.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284925355|gb|ADC27707.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927742|gb|EFV07069.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929163|gb|EFV08388.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 280

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++  ++++      I     L+  + E ++G    T 
Sbjct: 24  SAEFSEYKEFDVNTSDTLKAPLVYAIFNIAN-GGKIGILAGAILMSAIGEWMMGEEEITK 82

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 83  NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136

Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
           F      ++ I ++     L + Q    +L        + +   N + +       +   
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+ 
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256

Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
            V  N+ ++IT+ I   ++ L+   
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280


>gi|221200569|ref|ZP_03573611.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2M]
 gi|221209244|ref|ZP_03582234.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2]
 gi|221170900|gb|EEE03357.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2]
 gi|221179910|gb|EEE12315.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2M]
          Length = 385

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 17/291 (5%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           L P+      G   D      I ++L       L    +      V++     +     H
Sbjct: 100 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 158

Query: 73  IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
                     F        W  +  +       + +      AS    P       + + 
Sbjct: 159 AS---PAALRFELRRADGAWRCHGALLFDAPDALAV----FFASAPAAPPDAAALYANLP 211

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             L           + +           +E ++  +       R+       I    +  
Sbjct: 212 VPLVFEIGRTELT-MAELADVVGGDIIAIERWHAHEQNLLCVARVPAAPAWEITGRPSGS 270

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            +    +  +P   L  T   +  +   + + S             L V++   +     
Sbjct: 271 RLTVERIREMP---LEPTRTDTPPATGTAHDASPADAPR---ALDGLAVDLRFELPPTSM 324

Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
            L ++  L+ G VI            L ANG  I +  L  VG+   +R+ 
Sbjct: 325 PLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 375


>gi|86154056|ref|ZP_01072257.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842470|gb|EAQ59684.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 280

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++  ++++      I     L+  + E ++G    T 
Sbjct: 24  SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAILMSAIGEWMMGEEEITK 82

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 83  NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136

Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
           F      ++ I ++     L + Q    +L        + +   N + +       +   
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+ 
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256

Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
            V  N+ ++IT+ I   ++ L+   
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280


>gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2]
 gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580]
 gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2]
          Length = 377

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/347 (8%), Positives = 89/347 (25%), Gaps = 59/347 (17%)

Query: 25  LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVF 83
            G     +     +G +            ++  V+I+  +    + SH+   F       
Sbjct: 29  SGLSLMEQDTIGEIGNISFGSSATALSTLLNQKVEITTPTVSVIEKSHLNDEFPHPYVSI 88

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
             +    +S N  +         + + ++G               +  ++   + +   +
Sbjct: 89  GVSYTEGFSGNNLLVIKQEDAAIIADLMMGGDGTNADPSLGEIHLSAVQEAMNQMMGSAA 148

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP 202
             ++   S   + SP   D  D+   +        + +  ++  + + + + S  + + P
Sbjct: 149 TSMSTVFSKKIDISPPEVDLLDVKEGEGTEQIPKEDPLVKVSFRLKVGDLIDSHIMQLYP 208

Query: 203 QETLLKTTLISLSSQNKSENQSEDLID-------------------------------PF 231
                       +     E    + +                                  
Sbjct: 209 LTFAKDLIDELTNQDGGEEPVKTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKRQGTAKV 268

Query: 232 ARKTYQLNVNIDTRINLKK-------------TTLKDVVTLK-----IGQVIPF------ 267
           +           +     +               L   V L      + +V+        
Sbjct: 269 SEPVQVAPAEFQSFAPQTEAQPHLQNLDMLMDIPLSVTVELGRTNRSVKEVLELSTGSII 328

Query: 268 --LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                      +  N + +   E+  + +N+ +R+TD ++  ++  K
Sbjct: 329 ELDKLAGEPVDILVNQRVVAKGEVVVIDENFGVRVTDILSQAERISK 375


>gi|126732535|ref|ZP_01748333.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37]
 gi|126706981|gb|EBA06049.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37]
          Length = 368

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 77/268 (28%), Gaps = 19/268 (7%)

Query: 43  KKFLPKIFKEKMDLDVDISYTS----CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
            K L +      D+  D++  +     +S     ++       +          +     
Sbjct: 4   AKALRRALSRTADVMWDLALVTQSVTVESLDQDGVVEGLSAKDLLVLLD-GPDGTIGLAS 62

Query: 99  CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI--STTQES 156
               ++  ++E         +P   +R L+  +  +    I      +   +  S   E 
Sbjct: 63  VDRQVMTGVVEVQTIQQVTQMPVDEDRVLTQTDAAMIAPLIDGTLHSMAGALADSPIGEM 122

Query: 157 SPNLEDFYDIDYLKKNTNR--LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
                    ++  +  +     +        +++ +         I+P+   +       
Sbjct: 123 LQGFRFGAMLEDARSASLLLDAAGYRAFRAQVDLALGRRKGCLSFILPERKPVP----RS 178

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           + Q  ++          A    ++   +D  ++     L    TLK G V+         
Sbjct: 179 AEQGGADAAGPH-----AAILDRVPARLDAVLSRITLPLSRAQTLKPGDVLKLSKDALDR 233

Query: 275 AILSAN-GKEIYSCELGRVGKNYTIRIT 301
             + A  G  +    +G++     +R+T
Sbjct: 234 VEIIAGRGHMVAKGRMGQLNGARAVRLT 261


>gi|187732543|ref|YP_001879724.1| flagellar motor switch protein FliM [Shigella boydii CDC 3083-94]
 gi|187429535|gb|ACD08809.1| flagellar motor switch protein FliM [Shigella boydii CDC 3083-94]
          Length = 122

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 200 IIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
            +P   +     + ++   + S N+ ++  D   R+     + + T        L  ++ 
Sbjct: 6   CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVTNFADISLRLSQILK 65

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           LK G V+P         I   +G  + + + G +   Y +RI   IN 
Sbjct: 66  LKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 111


>gi|283955446|ref|ZP_06372944.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793073|gb|EFC31844.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 280

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 21/265 (7%)

Query: 64  SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           S +  ++         + K   V++  ++++      I  S  L+  + E ++G    T 
Sbjct: 24  SAEFSEYKEFDVNASDTLKAPLVYAIFNITN-GGKIGILASAVLMSAIGEWMMGEEEITK 82

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                       K+  +  I+  S  L        +   ++E    +       +    +
Sbjct: 83  NDQLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136

Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
           F      ++ I ++     L + Q    +L   L    + N   N++ +       +   
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKLAETGNANTDSNRNAEEKAIMLGEELK 196

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+ 
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256

Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
            V  N+ ++IT+ I   ++ L+   
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280


>gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT
           98-5491]
 gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
 gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
          Length = 285

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 80/248 (32%), Gaps = 21/248 (8%)

Query: 83  FSQASLSSWSSNFF-IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
            ++  + + +        S  +   L + +LG    T   + +  L   ++ +       
Sbjct: 44  MARVDIEADNGAKLAFFISPKVATALADMMLGGEGSTKETMDDDDLDATKE-IVSNIFGA 102

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
           +S  L        + S +L+D + I             F      +  +  +  S  L  
Sbjct: 103 VSTSLG-AQKELPKLSFSLKDIHFISETADLETDRFTNFY---TFSFNLGTIQDSLFLAF 158

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK--------------TYQLNVNIDTRIN 247
            +E        S  +  ++   S    +                      + + +  RI 
Sbjct: 159 SEEFENLFKENSQETNQETPQPSIQNTNHQDNAALELNNAEMKNMAMLLDVRLQVKVRIG 218

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            KK  LKDV+ + IG V+           +  + K I   E+  V  N+ I+IT+ I   
Sbjct: 219 QKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVVIVDGNFGIQITE-IAPK 277

Query: 308 QKSLKNFL 315
           +  ++  +
Sbjct: 278 KDRIEQLM 285


>gi|84686561|ref|ZP_01014454.1| possible flagellar switch protein FliM [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665474|gb|EAQ11951.1| possible flagellar switch protein FliM [Rhodobacterales bacterium
           HTCC2654]
          Length = 378

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 19/269 (7%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQS----GKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
            + L     +  +    +S  + Q        + I+    E+ + +            I 
Sbjct: 29  ARILRTAIMQAGEDVAALSIVAGQPEEMRTTLAPIVEGIGEHALMALIEGPEGR-YGLIL 87

Query: 99  CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ-CISTTQESS 157
              + +  L+E          P    R  +  +  +    I ++  +L         + +
Sbjct: 88  VDPDTLAALIEIQTTGRVVPRPATA-RPPTRTDAIMCADFIDRVLELLEDRTAEADIDIA 146

Query: 158 PNLEDFYDIDYLKKNTNRLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
           P L  F     L +                 +++++       +  +I+P          
Sbjct: 147 PALGGFRYALALSEARAIPMTLDDVPYRRFHVSLDLGRGAKQGTLDVILPFN------AA 200

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
              +   +           A    +  V +   ++  +  L +V  L +G VIP      
Sbjct: 201 PSGAAAATNADPAGFTQALAEVVGEAEVLLRGTLHRLQMPLAEVAGLSVGSVIPIPREAL 260

Query: 273 TCAILS-ANGKEIYSCELGRVGKNYTIRI 300
               +   NG+ +    LG  G +  IRI
Sbjct: 261 GQVAIEDINGRTVKHGRLGMSGGHRAIRI 289


>gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
 gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
          Length = 269

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 88/256 (34%), Gaps = 17/256 (6%)

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              +  +    I      F+    S+S          +  +   L + +LG   E    +
Sbjct: 24  PEVEIKQQGEKIVDIIPPFIKVNVSVSP-KGEIVFILTPEIATALGDMMLGGEGEARTDI 82

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
            +  L   ++ +       +++ L +     +  +  +ED   ++  +       +++  
Sbjct: 83  NDEDLDATKE-IVSNIFGSLTSTL-EAQDNMENLTFKVEDIAFVETNEDF-----SKYAY 135

Query: 183 TINMNMTIENVASSFVLIIPQETL----LKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
            +++   + +V     ++  ++ +             S ++   +    +D        +
Sbjct: 136 FLDLICKVASVEKECFVLFDKDFVSIFNNDIKDKISESSHELNKEIPSQLDML----MDV 191

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +  RI  K   LKDV+++ IG ++           +    K+I   E+  V  N+ I
Sbjct: 192 KLQLRVRIGKKTMLLKDVISMDIGSIVELDQLANEPLDILIEDKKIGEGEVVIVDGNFGI 251

Query: 299 RITDRINFDQKSLKNF 314
           +IT  I      L + 
Sbjct: 252 QITS-IGSKADRLNSM 266


>gi|311086395|gb|ADP66476.1| flagellar motor switch protein FliM [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 300

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
           G+  +     KI   +   +     K F   +   V++   S + G  +           
Sbjct: 2   GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 61

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
            +   +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  
Sbjct: 62  LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 121

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
           I+   ++          N  +       KK    L+  F+     N  I N    F  +I
Sbjct: 122 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 180

Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           P+  L      K      S +N    ++ +         Y + VNI ++I     +   +
Sbjct: 181 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 239

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             L +G V+                + I+     R  +   I I + I+   +
Sbjct: 240 YNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 290


>gi|219682014|ref|YP_002468398.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621747|gb|ACL29903.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 315

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
           G+  +     KI   +   +     K F   +   V++   S + G  +           
Sbjct: 17  GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 76

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
            +   +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  
Sbjct: 77  LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 136

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
           I+   ++          N  +       KK    L+  F+     N  I N    F  +I
Sbjct: 137 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 195

Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           P+  L      K      S +N    ++ +         Y + VNI ++I     +   +
Sbjct: 196 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 254

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             L +G V+                + I+     R  +   I I + I+   +
Sbjct: 255 YNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 305


>gi|257471133|ref|ZP_05635132.1| flagellar motor switch protein FliM [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
          Length = 300

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
           G+  +     KI   +   +     K F   +   V++   S + G  +           
Sbjct: 2   GESKNLHNEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 61

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
            +   +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  
Sbjct: 62  LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 121

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
           I+   ++          N  +       KK    L+  F+     N  I N    F  +I
Sbjct: 122 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 180

Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           P+  L      K      S +N    ++ +         Y + VNI ++I     +   +
Sbjct: 181 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 239

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             L +G V+                + I+     R  +   I I + I+   +
Sbjct: 240 YNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 290


>gi|259416357|ref|ZP_05740277.1| surface presentation of antigens protein [Silicibacter sp.
           TrichCH4B]
 gi|259347796|gb|EEW59573.1| surface presentation of antigens protein [Silicibacter sp.
           TrichCH4B]
          Length = 432

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/290 (8%), Positives = 85/290 (29%), Gaps = 19/290 (6%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           LAR      +  T     S      ++ + +  ++  +L + +      +     +    
Sbjct: 17  LARKLAASKE-GTAGTGGSLTLKALRRSVARAAEDLCELPMAVIAARQTNRVPEDLTGLL 75

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  +                     V  L++     +   +     R+ +  +  +   
Sbjct: 76  SDKHLLVVLDCPEGR-IGAATLDAAAVTALIQQQTMGTVLGMSG-DERNYTPTDAAMVAE 133

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENV 193
            + ++   +   +    +        +        T        +  V  +N+++    +
Sbjct: 134 FLEKLFGKVTNLLEDQSDLRIFEGYRFGAQVEDVRTLVLGMEADDYRVINLNVDLATGKM 193

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
                L++P+ ++           ++ +  +             +   +   +   +  L
Sbjct: 194 QGEICLVLPEPSV-----------DEYDEANAVRGPRLGSSVGSMRAELSAVLCKMRIPL 242

Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302
           +    LK+G+++P           ++ NG+ I    LG++     +R+  
Sbjct: 243 RQFSALKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQ 292


>gi|219681458|ref|YP_002467843.1| flagellar motor switch protein FliM [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219624301|gb|ACL30456.1| flagellar motor switch protein FliM [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 315

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 20/298 (6%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
           G+  +     KI   +   +     K F   +   V++   S + G  +           
Sbjct: 17  GESKNLHNEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 76

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
            +   +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  
Sbjct: 77  LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 136

Query: 142 ISAVLNQCIST--TQESSPNLEDFYDID---YLKKNTNRLSNEFVTTINMNMTIENVASS 196
           I+   ++       +E +      +          N   L N        N  I N    
Sbjct: 137 ITNAFSEIYKKYFVKEINFFNTKIFFDFKKYNFDLNKLFLINC------FNFKINNTEIF 190

Query: 197 FVLIIPQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
           F  +IP+  L      K      S +N    ++ +         Y + VNI ++I     
Sbjct: 191 FNFLIPKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISV 249

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +   +  L +G V+                + I+     R  +   I I + I+   +
Sbjct: 250 SYDKIYNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 305


>gi|99081347|ref|YP_613501.1| surface presentation of antigens (SPOA) protein [Ruegeria sp.
           TM1040]
 gi|99037627|gb|ABF64239.1| hypothetical protein TM1040_1506 [Ruegeria sp. TM1040]
          Length = 420

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/290 (9%), Positives = 90/290 (31%), Gaps = 19/290 (6%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           LAR      +  T     S      ++ + +  ++  +L + +      +     +    
Sbjct: 17  LARKLAASKE-GTAGTGGSLTLKALRRSVARAAEDLCELPMAVIAARQTNRVPEDLTGLL 75

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  +       +             V  L++     +   +     R+ +  +  +   
Sbjct: 76  SDKHLLVVLDCPAGR-IGAATLDAAAVTALIQQQTMGTVLGMSG-DERNYTPTDAAMVAE 133

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENV 193
            + ++ A ++  +    + S      +        T        +  V  +N+++    +
Sbjct: 134 FLEKLFAKVSSLLEDQTDLSIFEGYRFGAQVEDVRTLVLGMEAEDYRVINLNVDLATGKM 193

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
                L++P+ ++           ++ +  +             +   +   +   +  L
Sbjct: 194 QGEICLVLPEPSV-----------DEYDEANAIRGPRLGSSVGSMRAELTAVLCKMRVPL 242

Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302
           +   TLK+G+++P           ++ NG+ I    LG++     +R+  
Sbjct: 243 RQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQ 292


>gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH]
 gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH]
          Length = 270

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 89/280 (31%), Gaps = 16/280 (5%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
               L    +    +  + +  +IS  S         +   K  +      +        
Sbjct: 3   EFKELLINEIKSTIEGLIGIAPEISILSETRD-----LGPTKPPYAKIVIRVKP-KGEIL 56

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
                 +   L + +L        +L +  L  +++ +       +   L          
Sbjct: 57  FLIPAEIATALGDLMLAGEGTPKTELNDDDLDAIKE-IISNVFGALKTTLG-AQDNMPNL 114

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
              + + + +D          +E+   INM   + +V     ++  +         + S 
Sbjct: 115 DFEIANVFAVD-----KEEDISEYAYAINMECKVNDVVKVCQVVFDESVYDILNPSTKSE 169

Query: 217 QNKSENQSEDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
            + + +++ +L            + + +  RI  K   LKDV+ + IG ++      K  
Sbjct: 170 GSSTPSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAKEP 229

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
             +    K+I   E+  V  N+ I+IT  I   ++ L + 
Sbjct: 230 LDILIEDKKIGEGEVVIVDGNFGIQITS-IGSREERLNSL 268


>gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
 gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
 gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
 gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
          Length = 287

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 96/285 (33%), Gaps = 27/285 (9%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +     +      S      +            +++    S+  +    +LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEISSSDESFLKLISTPYARVKISAIEKEESSIELLAPVDLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   +  
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125

Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
              +        E     +  +  +E +  S ++++  E          + Q + E  ++
Sbjct: 126 TNAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTEAFEDQFKK--THQEEKEEATK 183

Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             I+                      + +N+  RI  KK  LKDVV++ IG V+      
Sbjct: 184 STIEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287


>gi|157373222|ref|YP_001471822.1| hypothetical protein Ssed_0081 [Shewanella sediminis HAW-EB3]
 gi|157315596|gb|ABV34694.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 288

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 89/297 (29%), Gaps = 28/297 (9%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           +   P+   L+     +      ++    S        L  I ++       IS T    
Sbjct: 16  ERVRPV--ALIQEKLARSRLLIQVDACQRSFLEAANGVLNPIIRQGHHALSSISLTDSDQ 73

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
                ++      +   +      +           +  L     G S  T+ +   R+ 
Sbjct: 74  S----VVPDINNGWFLLRYQRLPLAWW---RIDKCTLDQLASGYYG-SLATLLKSPLRAP 125

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S  E +LAK+ +     VL           P  E   +   L+   N    +      + 
Sbjct: 126 SQSEFRLAKKLMLAALKVL-----------PTAELDENALELELVVNSTPIDSPVIWEIA 174

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
             +E+  +  +  +      +  L  +S Q      + DL +  + +  Q+ + I   + 
Sbjct: 175 FPVEHKVAPMLFCMT-----EHLLGLMSEQPSQYMATPDLAEKLSYRLRQIPIKILFELG 229

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            + T +  +  L++G ++P     +         + ++   +         ++   I
Sbjct: 230 RQSTPVTSLHGLEVGDILPMNLHSRCPVT--VGKRPLFYAAIHTHDGQMVAKLAQDI 284


>gi|237751753|ref|ZP_04582233.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879]
 gi|229373119|gb|EEO23510.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879]
          Length = 283

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 105/283 (37%), Gaps = 12/283 (4%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
               L+ + +       M     +++T         ++ +     V + +  +S  S   
Sbjct: 8   DFIELFIQEMVATIDGMMGRTAVVTHTGDTEVS-DSLLGTPFGKVVVNVSLGASQVSTLC 66

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
                NL   L + ++G   +T   + +      +K   K     I+  L   +   ++ 
Sbjct: 67  FIMPENLATALPDLMMGGEGDTGKDMMD----DDDKDGLKEVFQSITGALATALGGHEKL 122

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLS 215
                   D+  ++       ++F T    ++ I++V S  +++   + L      +   
Sbjct: 123 PHFSFAIADVSNVES--EGSLSDFDTASRFDVGIDSVKSELIMLTKNDLLTHVPKDLKAP 180

Query: 216 SQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +   S N+   L D   R       + +++  RI  K+  LKDV+++ IG V+       
Sbjct: 181 ASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSVVELNQLAS 240

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
               +  N K I   E+  V  N+ I+IT+ I   ++ L++  
Sbjct: 241 DPLEILVNDKIIGKGEVVVVDGNFAIQITE-IGTKKERLESLR 282


>gi|10802799|gb|AAG23621.1|AF244672_1 flagellar motor switch protein [Carboxydothermus hydrogenoformans]
          Length = 153

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
             +  ++  L G S +  P++  R L+ +E  + K+   ++   L Q  +   +  P +E
Sbjct: 1   EFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLAQAWAEIIKVEPEIE 58

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
                +  + +     NE V  I     I        L +P E L        +S
Sbjct: 59  ALE--NNPRLHQVLSPNEIVAIITFTTEILGNNGLINLCLPFEVLDPLLAKLSAS 111


>gi|114798089|ref|YP_759234.1| SPOA domain-containing protein [Hyphomonas neptunium ATCC 15444]
 gi|114738263|gb|ABI76388.1| SPOA domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 325

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 77/302 (25%), Gaps = 33/302 (10%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
                 P  P L+   T          +            L +  +E   L    S    
Sbjct: 40  TEPEAVPA-PKLVQEFTPA---PPAQGEAREEAARRISARLSRAMREHCGLAAAFSVKRV 95

Query: 66  QSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
                +  + +  E        S +       +     L   ++E   G     +P    
Sbjct: 96  SPASLAQAVSARDEPGQAIVCCSGADGDVAAMLVIGAGLAQIMIETACGG---PVPNGQP 152

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           ++LS ++  L +     ++                L             +  +      I
Sbjct: 153 KALSPIDLALVEGLTRPLA----------PFIGRGLGFAGVETDPLFAASIAAPGVAYEI 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            +++          L+     +LK  L        +  +                V +  
Sbjct: 203 TLSVRAGGADWPARLL-----VLKPFLAEAPEAEAAPTRGAHASGALT-------VLMTA 250

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE---IYSCELGRVGKNYTIRIT 301
           R+   +  +  + +L+ G  +           L + G +       ++GR G    +RI+
Sbjct: 251 RVARVEMPISRLTSLRPGVTLLLGVPADQPVELLSGGLDGDVAAEAQIGRKGNRMALRIS 310

Query: 302 DR 303
            R
Sbjct: 311 KR 312


>gi|15616702|ref|NP_239914.1| flagellar motor switch protein FliM [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386787|sp|P57182|FLIM_BUCAI RecName: Full=Flagellar motor switch protein FliM
 gi|25403543|pir||H84938 flagellar motor switch protein fliM [imported] - Buchnera sp.
           (strain APS)
 gi|10038765|dbj|BAB12800.1| flagellar motor switch protein fliM [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 315

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
           G+  +     KI   +   +     K F   +   V++   S + G  +           
Sbjct: 17  GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 76

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
            +   +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  
Sbjct: 77  LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 136

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
           I+   ++          N  +       KK    L+  F+     N  I N    F  +I
Sbjct: 137 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 195

Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           P+  L      K      S +N    ++ +         Y + VNI ++I     +   +
Sbjct: 196 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 254

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             L IG V+                + I+     R  +   I I + I+   +
Sbjct: 255 YNLSIGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 305


>gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
 gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
          Length = 284

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 76/238 (31%), Gaps = 21/238 (8%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
            +N  +  S  +   L + +LG        + N  L   ++ +       IS  L     
Sbjct: 54  DANLALFISPKVATALADMMLGGEGTAKDTMDNDDLDATKE-ITSNIFGAISTSLG-AQK 111

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
              + S  L++   I    +      + F         + ++           +  K+  
Sbjct: 112 ELPKLSFTLKNIQFITEDSELGLENFSGFY---TFAFNLGSIQDFLYFAF-SSSFEKSFN 167

Query: 212 ISLSSQNKSENQSEDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVV 257
            + +  + +     +       +                 + + +  RI  KK  LKDV+
Sbjct: 168 PNTTEDSDNVALDANTQTEAEEEKFELNNAGLKNIAMLLDVRLQVKVRIGQKKMLLKDVI 227

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
            + IG V+           +  + K I   E+  V  N+ I+IT+ I   +  ++  +
Sbjct: 228 AMDIGSVVELNQLANDSLEVLVDDKVIAKGEVVIVDGNFGIQITE-IAPKKDRIEQLM 284


>gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Tepidanaerobacter sp. Re1]
 gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Tepidanaerobacter sp. Re1]
          Length = 376

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/347 (9%), Positives = 90/347 (25%), Gaps = 65/347 (18%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQAS 87
           +        +G +            +   V I+           +  ++         + 
Sbjct: 26  REEMDALGEIGNISIGTSATTLYSLLRNKVVITTPKVYITNIKKLKEAYPIPFISIEVSY 85

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
               + +  +    +    + + ++G     +    +    +   +   + +   +  L+
Sbjct: 86  TKGLNGSTLMIMKEDDAKIIADLMMGGDGSNVDVELDDIRMSAVGEAMNQMMGSAATSLS 145

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN--MNMTIENVASSFVLI-IPQE 204
             +      SP      ++           +E + TI+  M +     +    L+ IP  
Sbjct: 146 IMLKKDINISPPRVTRINLATDSLKGYFDEDEDIVTISFKMEVGDFLKSEIMQLMPIPFA 205

Query: 205 TLL--------------------------------------------------KTTLISL 214
             L                                                         
Sbjct: 206 KSLVEQLYTLSLSETTTNTDSINNEKINEEPKQIHSEQTSVRNITEQEAVLTMPQKEPLK 265

Query: 215 SSQNKSENQSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           S+QN            F  +              + + +   +   + T+K+++ +  G 
Sbjct: 266 SAQNAEVTVKPVEFHTFKEEPTAAQSSSLNLILDVPLEVTVELGRTEKTIKEILEISSGT 325

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +I         A +  NGK +   E+  + +N+ +RIT+ IN   + 
Sbjct: 326 IIELDKMAGEPADILVNGKLVAKGEVVVIDENFGVRITEIINSVDRV 372


>gi|110680043|ref|YP_683050.1| hypothetical protein RD1_2838 [Roseobacter denitrificans OCh 114]
 gi|109456159|gb|ABG32364.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 382

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/260 (10%), Positives = 74/260 (28%), Gaps = 12/260 (4%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L K+  +   + + +   + +     ++    +++ +                   NLV 
Sbjct: 30  LAKVADDAFHMALAVIGVTQERCAAENLSDKIEDDSLLVLLD-GPAGVTGGAVIGANLVN 88

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS----AVLNQCISTTQESSPNLE 161
            L++          P   +R L+  +  L    +  +      +L          +    
Sbjct: 89  ALVQQQTMGRV-LPPTSASRPLTETDAALCAPVLDALFIRANGLLETPEDKRVLPAFKFG 147

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
              D   L           V  + ++++     S+  LI+P    +          ++SE
Sbjct: 148 ARADSQRLFALALEEPEYTVLKLTIDVSGGITQSTLSLILPLPKAVPER-----QSSESE 202

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-AN 280
                      +    +   +   +   + +L ++  L+ G  +           L    
Sbjct: 203 TADPGSPATLEKSVMAVTAELSAVLCRVRVSLSEMSRLRPGHTLSIPANAFESVELLSIE 262

Query: 281 GKEIYSCELGRVGKNYTIRI 300
           G  +    +G++     + +
Sbjct: 263 GARVARGSMGQIDGKRALML 282


>gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16]
          Length = 287

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 94/284 (33%), Gaps = 25/284 (8%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +     +      S                   +++    S+  +     LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEVSNSEEAWESLISTPYARVVISAIEKEESSIELLAPVVLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L        + +    +    
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKFNFTTINAEIA 131

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
             L K       ++   I  +  +E +  S ++++      +      + Q + E +++ 
Sbjct: 132 KELPKKE-----DYAKMIVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEEKTKS 184

Query: 227 LIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
             +                      + +N+  RI  KK  LKDVV++ IG V+       
Sbjct: 185 ATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 244

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
               +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 245 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|254440956|ref|ZP_05054449.1| Surface presentation of antigens protein [Octadecabacter
           antarcticus 307]
 gi|198251034|gb|EDY75349.1| Surface presentation of antigens protein [Octadecabacter
           antarcticus 307]
          Length = 330

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 81/287 (28%), Gaps = 19/287 (6%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R      D      +         + L +   + + L   +   + +      +I S 
Sbjct: 14  LTRAIPPADDAAPATPMRQMR-----RALGRAADKAVGLSASVLGIAEEDLDSEGLIESG 68

Query: 78  KENFVFSQASLSSWSS-NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
            E +V       S +           L   L+E               R ++ V+  ++ 
Sbjct: 69  PEGWVVLGLRDGSSAGLTGLFLMDQPLRSALVEMQTMGCL-LPAADEQRRVTRVDAVMSV 127

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL--SNEFVTTINMNMTIENVA 194
              +Q+ A L +      +  P   D   ID L+     +   N     I + M   +  
Sbjct: 128 PFASQLLAELAEVGFGAADFEPTAYDIGPIDDLRTAGLVMLQGNYRCWRITIQMGGGDAQ 187

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
              ++ +              S    ++ S                 +D  +      + 
Sbjct: 188 GEMLIAL--------RPKVPVSSLPVKDTS-VWSMALRSAVQDAPAELDAVLTRMTLPIH 238

Query: 255 DVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRI 300
            +   ++G V+           L+   G+ I +  LG+V     +R+
Sbjct: 239 KIEAFEVGHVLNLAGTTVGLVTLTGPGGEIISTARLGQVAGKRAVRV 285


>gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM
           1740]
 gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
          Length = 289

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 84/255 (32%), Gaps = 26/255 (10%)

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
              +    +    S          L   L + +LG   E+  ++    +        K  
Sbjct: 42  PMALIYLNTTGEGSGKIAFLVPPALGTALADLMLGGEGESREEMSEDDVDAT-----KEI 96

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
            + I   ++  +S  +E           D+++  +  L + F      + ++  + S   
Sbjct: 97  ASNIFGAISTALSAQKELPKLNFAPEKADFVQGGSIDL-SSFEKIFTFSFSLNTIRSELY 155

Query: 199 LIIPQETL---LK---------------TTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
           L +    +                    ++     S   + N SE  +         + +
Sbjct: 156 LAVDSSFVKIFEPKSAPSASASSYSESGSSFGGSYSGAPNVNLSEPEMKNIGM-LLDVKL 214

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +  RI  KK  LKDV+++ IG V+           +  + K I   E+  V  N+ I+I
Sbjct: 215 QVKVRIGQKKMLLKDVISMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDGNFGIQI 274

Query: 301 TDRINFDQKSLKNFL 315
           T+ I   ++ L+   
Sbjct: 275 TE-IGTKRERLEQLR 288


>gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 375

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/350 (12%), Positives = 97/350 (27%), Gaps = 68/350 (19%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
               + +   +G +            ++  V+I+       K+  +   F          
Sbjct: 27  SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSVLKWDELPKEFPVPYVAIKVV 86

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                     +      V  + + ++G +   E   QL    LS +++    + +   S 
Sbjct: 87  YKEGLDGINLLILKKEDVEIIADLMMGGTGQVEFTEQLTELQLSAIQEA-MNQMVGSAST 145

Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
            L+  ++   + +P       +  +  +        + +  I   MTI + + S  + +I
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKIAFRMTIGDLIDSQIMQLI 205

Query: 202 P---------------------------------------QETLLKTTLISLSSQNKSEN 222
           P                                       Q     T     S Q+ +  
Sbjct: 206 PVDFAKQLVDAMFKNTFNASAQAETSAKSHSETVKEETLKQPASQPTNKQKTSPQSYTPP 265

Query: 223 QSEDLIDPF------------ARKTYQLNVNIDTRIN---LKKTTLKD-------VVTLK 260
             ++                   +  +   NI+  ++        L         ++   
Sbjct: 266 PKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFS 325

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            G +I           +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 326 TGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375


>gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
 gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
          Length = 287

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 94/283 (33%), Gaps = 23/283 (8%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +   + +      S      +            +++    S   +    +LV  
Sbjct: 14  STLEGLVGKALSVGLEKEVSSSEESFLKLISVPYARVKISAIEKEESPIELLAPVDLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   +  
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125

Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLL------KTTLISLSSQNK 219
              +        E     +  +  +E +  S ++++                   ++++ 
Sbjct: 126 TNAEIAKEIPKKEDYAKAMVFSFKMEAIKESQIILLTTAAFEGQFEKNHKEEKEEATKSA 185

Query: 220 SENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
           +E            +         + +N+  RI  KK  LKDVV++ IG V+        
Sbjct: 186 TEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 245

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 246 PLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287


>gi|163731544|ref|ZP_02138991.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149]
 gi|161394998|gb|EDQ19320.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149]
          Length = 382

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/268 (10%), Positives = 74/268 (27%), Gaps = 12/268 (4%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L K+     D+ + +   + +      +    +E+ +                    LV 
Sbjct: 30  LAKVADTAFDMALAVIGVTQERCAAEDLPEKIEEDSLLILLD-GPAGVTGGAVVGAALVN 88

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS----AVLNQCISTTQESSPNLE 161
            L++               R L+  +  L    +  +      +L          +    
Sbjct: 89  ALVQQQTMGRVLPPA-PNARPLTATDAALCAPVLDALFIRANGLLETPEDKQILPAFKFG 147

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
              D   L           V  + ++++     S+  L++P    +          ++ E
Sbjct: 148 ARADSQRLFSLALEEPEYTVLKLTIDVSGGIAQSTLTLVLPIPKAVPERHN-----SEGE 202

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-AN 280
           + +             +   +   +   + +L ++  L+ G  +           +    
Sbjct: 203 SAAPGSPATLEHSVMAVTAELSAVLCRVRVSLSEMSRLRPGDTLSIPSNAFDSVEVLSIE 262

Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQ 308
           G  I    +G+V     + ++   + DQ
Sbjct: 263 GARIARGAMGQVDGKRALMLSQTSSSDQ 290


>gi|221209605|ref|ZP_03582586.1| bcscQ [Burkholderia multivorans CGD1]
 gi|221170293|gb|EEE02759.1| bcscQ [Burkholderia multivorans CGD1]
          Length = 441

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 75/292 (25%), Gaps = 21/292 (7%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           L P+      G   D      I ++L       L    +      V++     +     H
Sbjct: 158 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 216

Query: 73  IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
                     F        W  +  +       + +      A+    P       + + 
Sbjct: 217 AS---PSALRFELRRADGAWRCHGALLFDAPDALAV----FFATAPAAPPDAAALYANLP 269

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             LA                        +E +   +        +       I       
Sbjct: 270 VPLAFELGRTALTAAELA-DVVAGDIIAIEHWRAHEQDLLCVAYVRAAPAWEITGRPAGN 328

Query: 192 NVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
            +    +  +P   L       + ++   +            R    L V++   +    
Sbjct: 329 RLTVQRIREMP---LEPPRTDSASAAAPDTPPADAP------RSLDGLAVDLRFELPPTS 379

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
             L ++VTL+ G VI   H        L ANG  I + +L  VG+   +R+ 
Sbjct: 380 MPLGELVTLQPGAVIELPHGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 431


>gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
 gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
          Length = 287

 Score = 89.3 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 94/286 (32%), Gaps = 29/286 (10%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSF--KENFVFSQASLSSWSSNFFIGCSNNLVI 105
              +  +     +     +         S           +++    S+  +     LV 
Sbjct: 14  STLEGLVGKTPSVGLEK-EVSNSEEAWGSLISAPYARVVISAIEKEESSIELLAPVVLVT 72

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
            L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   + 
Sbjct: 73  ALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FT 124

Query: 166 IDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224
               +        E     I  +  +E +  S ++++             + Q + E  +
Sbjct: 125 TINAEIAKELPKKEDYAKMIAFSFKMEALKESQIILLTTAAFEHQFEK--THQEEKEETT 182

Query: 225 EDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +   +    K                 + +N+  RI  KK  LKDVV++ IG V+     
Sbjct: 183 KSATEEVKTKDESLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287


>gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori
           SouthAfrica7]
          Length = 282

 Score = 89.3 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 16/277 (5%)

Query: 48  KIFKEKMDLDVDISY-TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +     +       + + + +I +     + S    S   S+  +     LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEVSNDEEADLISAPYARVMISAIDKSE--SHIELLAPVGLVTA 71

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L        + +    +    
Sbjct: 72  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTTNAEIA 129

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
             L K             +  M     +   +L+         T     S   +  +++ 
Sbjct: 130 KDLPKKE---DYTKAMVFSFKMEALKESQMILLVTSAFESQFETKKEPESAESATEETKT 186

Query: 227 LIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                             + +N+  RI  KK  LKDVV++ IG V+           +  
Sbjct: 187 HDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILV 246

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 247 DDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 282


>gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57]
          Length = 287

 Score = 89.3 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 93/285 (32%), Gaps = 27/285 (9%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106
              +  +     +      S             +     S      S+  +    +LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEVSNSEEAWESLISVPYARVMISAIEKEESSIELLAPVDLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ +  L   ++ +A      I+  L       QE  P L   +  
Sbjct: 74  LSDLMLGGEGASKEEMDDDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125

Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
              +        E     I  +  +E +  S ++++      +      + Q + E  ++
Sbjct: 126 INAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEETTK 183

Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
              +                      + +N+  RI  KK  LKDVV++ IG V+      
Sbjct: 184 SATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287


>gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli
           95/1000]
 gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli
           95/1000]
          Length = 348

 Score = 89.3 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 94/294 (31%), Gaps = 40/294 (13%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-SNFFIGCSNNLVITL 107
                    V I+  +   G  S++        + ++ S +  +  N +        +T+
Sbjct: 58  SLSSISTKTVSITNITTTVGDVSNLHQMLSGKVIEAKVSYTGSANGNVYYFMDEKEALTI 117

Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
              + G             L+ +  ++ K   +Q+  V +  +++    +          
Sbjct: 118 ASLMTG--------QAETDLNDMVAQVLKEAFSQMIGVSDSALTSKFGGNFTNAPVETSI 169

Query: 168 YLKKNTNRLSNEFVTT---INMNMTIENVASSFVLIIPQ-ETLLKTTLISLSSQNKSENQ 223
                +  ++         ++++  I+N    F   +P  + +L     + S+ NK+   
Sbjct: 170 LDDSASISITGPLAIVSGSLSIDGEIDNAPYIFAFELPVLQAILSNASKTTSNANKTSAS 229

Query: 224 SEDLIDPFAR---------------------------KTYQLNVNIDTRINLKKTTLKDV 256
           S +                                      + +N+   +     T+KD+
Sbjct: 230 SNNNTQANDNGKQLGVQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIKDI 289

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + L  G +I           L  NGK I   E+  + +N+ +R+TD I+   + 
Sbjct: 290 LGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIISPMDRL 343


>gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
 gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus
           C3-41]
          Length = 407

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 80/309 (25%), Gaps = 38/309 (12%)

Query: 14  HPILLAR-LTGKLGD---KKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A  + G  G        E   S++     + +           +  VDIS  +  
Sbjct: 121 DAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTID 180

Query: 67  SGKFS--HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
               S      +  E+ +  + S      N      +NL+  L                 
Sbjct: 181 LMNISQNEGRENIPEDDLLVKVSFRLKIGNL---IDSNLMQLL----------------- 220

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR--LSNEFVT 182
                   K ++  +  +             +            ++          + V 
Sbjct: 221 ------PLKFSQNIVKSLLGETESIEEPVAATIAPEAPPITAPPVQTQAPVMPPPAQPVY 274

Query: 183 TI-NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
                 M             P        +      +   N               + + 
Sbjct: 275 QQPEATMQQPVYQEPQQFAQPARAAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIPLQ 334

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +   K ++K+++ L  G +I           +  N + I   E+  + +N+ +RIT
Sbjct: 335 VTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVRIT 394

Query: 302 DRINFDQKS 310
           D ++  ++ 
Sbjct: 395 DVLSQAERL 403



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 68/227 (29%), Gaps = 5/227 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLD 57
           +RG+++    S      +        +             +G +            +   
Sbjct: 15  LRGETLEDKNSGTEASSIDETNDLRVEDYLDSFAQDALGEVGNISFGSSATALSALLGQK 74

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASH 116
           VDI+  S      + +   F   +V  Q   +   +    +    +    + + +LG   
Sbjct: 75  VDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMNLLVIKQSDAAIIADLMLGGDG 134

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
                       +  ++   + +   +  ++   +   + SP   D  +I   +   N  
Sbjct: 135 LNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTIDLMNISQNEGRENIP 194

Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSEN 222
            ++ +  ++  + I N + S+ + ++P +         L      E 
Sbjct: 195 EDDLLVKVSFRLKIGNLIDSNLMQLLPLKFSQNIVKSLLGETESIEE 241


>gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7]
          Length = 290

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 26/286 (9%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106
              +  +     +      S      +      +     S       +  +     LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEISSSDESFLKLISTPYARVMLSAIEKEEGSIELLAPVVLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   +  
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAITTSLKS-----QELLPKLN--FTT 125

Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK--------TTLISLSSQ 217
              +        E  T  +  +  +E +  S ++++      +            ++ S 
Sbjct: 126 INAEIAKELPKKEDYTKAVVFSFKMEAIKESQIILLTTAAFERQFEKTHKEEKEETIKST 185

Query: 218 NKSENQSEDLIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
            ++  + +                   + +N+  RI  KK  LKDVV++ IG V+     
Sbjct: 186 TEATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 245

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 246 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290


>gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
 gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
          Length = 410

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 85/311 (27%), Gaps = 39/311 (12%)

Query: 14  HPILLAR-LTGKLGD---KKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A  + G  G        E   S++     + +           +  VDIS  +  
Sbjct: 121 DAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTID 180

Query: 67  SG--KFSHIIHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119
                      +  E+ +  + S          SN            ++++LLG +    
Sbjct: 181 LMNISQDEGRENIPEDDLLVKVSFRLRIGNLIDSNLMQLLPLKFSQNIVKSLLGETGVF- 239

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                      E+ +A     +   V    +      +P  E              +  E
Sbjct: 240 -----------EEPVAATIAPEAPPVTPPPVQQQIPVAPPSEQPVYQQQSAPMQQPIYQE 288

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
                                 P +      +      +   N               + 
Sbjct: 289 P-------------QQFAQPARPAQPAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIP 335

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   K ++K+++ L  G +I           +  N + I   E+  + +N+ +R
Sbjct: 336 LQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVR 395

Query: 300 ITDRINFDQKS 310
           ITD ++  ++ 
Sbjct: 396 ITDVLSQAERL 406



 Score = 70.8 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 68/227 (29%), Gaps = 5/227 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLD 57
           +RG+++    +         +     +             +G +            +   
Sbjct: 15  LRGETLGDKNNDTDASTNEEINEIRVEDYLDSFAQDALGEVGNISFGSSATALSALLGQK 74

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASH 116
           VDI+  S      + +   F   +V  Q   +   +    +    +    + + +LG   
Sbjct: 75  VDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMNLLVIKQSDAAIIADLMLGGDG 134

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
                       +  ++   + +   +  ++   +   + SP   D  +I   +   N  
Sbjct: 135 LNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTIDLMNISQDEGRENIP 194

Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSEN 222
            ++ +  ++  + I N + S+ + ++P +         L      E 
Sbjct: 195 EDDLLVKVSFRLRIGNLIDSNLMQLLPLKFSQNIVKSLLGETGVFEE 241


>gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
          Length = 287

 Score = 88.9 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 25/284 (8%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106
              +  +     +      S             +     S      S+  +     LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEVSNSEEAWESLISVPYARVMISAIEKKESSIELVAPVVLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L        + +    +    
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKFNFTTTNAEIA 131

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
             L K       ++   +  +  +E +  S ++++      +      + Q + E  ++ 
Sbjct: 132 KELPKKE-----DYAKMMVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEETTKS 184

Query: 227 LIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
             +                      + +N+  RI  KK  LKDVV++ IG V+       
Sbjct: 185 AAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 244

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
               +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 245 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|15606467|ref|NP_213847.1| hypothetical protein aq_1238 [Aquifex aeolicus VF5]
 gi|2983683|gb|AAC07248.1| putative protein [Aquifex aeolicus VF5]
          Length = 182

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 61/195 (31%), Gaps = 13/195 (6%)

Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169
            +LG       +L  +  S +E  +  +      +   +  +     + ++ D    + +
Sbjct: 1   MMLGGE---PYELEGKPFSRLEMSMLTKLSESFCSTFREVWNEF--FTRDVTDCELSENV 55

Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID 229
            +      ++      + +  E +  S  L  P   L +                    +
Sbjct: 56  YELDL---DDDHYVAELGVENETLKRSLFLAFPLYLLKEIKEELS-----MRKPDPKERE 107

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
                  ++ VN++  +  +K  L  VV +  G VI      +    +   G+  +   L
Sbjct: 108 ELLSALLKVPVNLEVLLFKRKDKLNKVVNMGKGFVILTGKTPQEEVEVLVQGRLKFLGIL 167

Query: 290 GRVGKNYTIRITDRI 304
           G       ++I+  +
Sbjct: 168 GEKNGKRAVKISKIL 182


>gi|313672896|ref|YP_004051007.1| flagellar motor switch protein flin [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939652|gb|ADR18844.1| flagellar motor switch protein FliN [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 289

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 86/274 (31%), Gaps = 20/274 (7%)

Query: 55  DLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLG 113
                    S   G+ + I   +    + +    L+              +    + +L 
Sbjct: 25  GKSFQFQVESVSEGELNDIALEYMGQTLINIKESLNGIDGGIL--IDTLTITGFADLMLM 82

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
            S E + +L +     +     K  I Q  + +N   +   +             L  ++
Sbjct: 83  GSGEGVQELNDDLKDAI-----KELINQTISAMNIPFNDEFKKKVAFGVISVDTLLDTSS 137

Query: 174 NRLSNEFVTTINMNMTIENVASSF-------VLIIPQETLLKTTLISLSSQNKS---ENQ 223
               N  +  I+ +   +NV            LI+ +         S      +   + Q
Sbjct: 138 YVG-NILIFDISGSFDGKNVKFKIFFSSKLKNLIMVESAEDDDFDFSPEVTAVNPMPKQQ 196

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
                         + V +  RI   K  LKD+V+L  G ++      +   ++  N K 
Sbjct: 197 KTTYGGKNIDLLLDVEVPVSIRIGSTKMFLKDIVSLSPGNIVELDEYAEEPVVVMVNNKP 256

Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           I   E+  V   + +RI + I+ +++ +K    K
Sbjct: 257 IAKGEVVIVDGYFGVRIKEIISKEER-IKKLRDK 289


>gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30]
          Length = 287

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 29/286 (10%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSF--KENFVFSQASLSSWSSNFFIGCSNNLVI 105
              +  +     +     +         S           +++    S+  +     LV 
Sbjct: 14  STLEGLVGKAPSVGLEK-EVSHSEEAWGSLISAPYARVVISAIEKEESSIELLAPVVLVT 72

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
            L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   + 
Sbjct: 73  ALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FT 124

Query: 166 IDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224
               +        E  T  I  +  +E +  S ++++      +      + Q + E  +
Sbjct: 125 TINAEIAKELPKKEDYTKMIAFSFKMEALKESQIILLTTVAFERQFEK--THQEEKEETT 182

Query: 225 EDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +   +                      + +N+  RI  KK  LKDVV++ IG V+     
Sbjct: 183 KSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287


>gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826]
 gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826]
          Length = 284

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 105/292 (35%), Gaps = 20/292 (6%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENFVFSQASLSS-W 91
           +++    ++   L    +       +I     +  +F     +  K   V +  +LS   
Sbjct: 1   MTNEFFNIFSNELKATIEGLTGRTPEIG----ERNEFDAPAQNGIKPPVVMASVTLSGDI 56

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
           ++   I C+  L+  + E ++G          N +L + E   AK   + + +  +  + 
Sbjct: 57  NAKAEIACTPVLISAVSEWMMG----EEEISKNENLGSDELDAAKEIFSNLFSAFSTSLG 112

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL---LK 208
             +       +  ++++L +N++   + F      N+ IE++      +     +     
Sbjct: 113 AQKGMPKISFEVINVNFLDENSSLDFSVFEKLFLFNIKIEDLNEHVAFVCDHTLMRFFEP 172

Query: 209 TT----LISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
                   + ++      + E   +          + + +  RI  K+  LKDV+T+ IG
Sbjct: 173 AKSEPVDAAKAAAAPHALKGEFSAEEMRNIGLIMDVRLPMRVRIGSKRMLLKDVLTMDIG 232

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
            VI           +    K I   E+  +  N+ I+IT  I   ++ L+  
Sbjct: 233 SVIELNQLANDPLEILIGDKVIALGEVVIIDGNFGIQITQ-IGSKRERLQQL 283


>gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51]
          Length = 287

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 93/285 (32%), Gaps = 27/285 (9%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +     +      S                   +++    S+  +     LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEVSHSEEAWGSLISVPYARVVISAIEKEESSIELLAPVVLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   +  
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125

Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
              +        E     I  +  +E +  S ++++             + Q + E +++
Sbjct: 126 INAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFEHQFEK--THQEEKEEKTK 183

Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
              +                      + +N+  RI  KK  LKDVV++ IG V+      
Sbjct: 184 SATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38]
 gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38]
          Length = 287

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 92/282 (32%), Gaps = 21/282 (7%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +     +      S      +            +++    S+  +    +LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEVSNSEESFLKLISVPYARVKISAIEKEESSIELLAPVDLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L      
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLNFTTTN 127

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL-----KTTLISLSSQNKSE 221
             + K   +  +     +  +  +E +  S ++++                   +   + 
Sbjct: 128 AEIAKELPKKEDYTKAMV-FSFKMEAIKESQIILLTTAAFEGQFEKTHKEEKEETTQSAT 186

Query: 222 NQSEDLIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
            + +                   + +N+  RI  KK  LKDVV++ IG V+         
Sbjct: 187 EEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDP 246

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
             +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 247 LEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287


>gi|307718612|ref|YP_003874144.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
           6192]
 gi|306532337|gb|ADN01871.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
           6192]
 gi|315186375|gb|EFU20135.1| flagellar motor switch protein FliN [Spirochaeta thermophila DSM
           6578]
          Length = 350

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/322 (10%), Positives = 87/322 (27%), Gaps = 47/322 (14%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
                +   +L                   V++     ++ +    I    E  V     
Sbjct: 33  SPEELRKFRALLQNTVASQAANLSMLTGKQVEVQPPEVKAVQAETFIRGLPEQVVKVDIP 92

Query: 88  L-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                 +          V TL+  LL           N  L+       +  ++Q++  +
Sbjct: 93  FTEGTRAAHGYVLDRE-VSTLIAGLLMGQ-------ENVELTEAAVSALQEGLSQMNGPV 144

Query: 147 NQCISTTQESSPNLEDFYDIDYLKK-----NTNRLSNEFVTTINMN----MTIENVASSF 197
              +      +         ++ +          ++ E+   I+      +   +V    
Sbjct: 145 VTSLGDVSGMTILTAPAQGAEFSRDQLNLDVPEVVTAEYPVVIDGVGHKVIEFFDVPFVR 204

Query: 198 VLIIP--QETLLKTTLISLSSQNKSENQSEDL---------------------------I 228
            L+ P            S S+Q  +  QS+                              
Sbjct: 205 SLVNPSRPSPSQPANQASTSAQGATMAQSQGQPTVWGPGAPQVQQVQFPSFPEGALGPEQ 264

Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
                    + + +   +   K  +K+++ +  G +I           +  N K I   E
Sbjct: 265 QANISLLMDVYMELTVELGRTKKMVKEILAMGEGTIIELDKLAGEPVDILVNHKLIARGE 324

Query: 289 LGRVGKNYTIRITDRINFDQKS 310
           +  + +N+ +R+T+ I+  ++ 
Sbjct: 325 VVVIDENFGVRVTEIISPLERL 346


>gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A]
          Length = 287

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 94/285 (32%), Gaps = 27/285 (9%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +     +      S                   +++    ++  +     LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEVSNSEEAWGSLISVPYARVVISAIEKEENSIELLAPVVLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   +  
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125

Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
              +        E     I  +  +E +  S ++++      +      + Q + E +++
Sbjct: 126 INAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEEKTK 183

Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
              +                      + +N+  RI  KK  LKDVV++ IG V+      
Sbjct: 184 STTEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|310814876|ref|YP_003962840.1| possible flagellar switch protein FliM [Ketogulonicigenium vulgare
           Y25]
 gi|308753611|gb|ADO41540.1| possible flagellar switch protein FliM [Ketogulonicigenium vulgare
           Y25]
          Length = 340

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/292 (10%), Positives = 80/292 (27%), Gaps = 29/292 (9%)

Query: 39  GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
             + ++   +   E   L   ++      G    I+ +  +  +              + 
Sbjct: 24  QRVLRQSFARALTEVGGLRATLALPDVGEGVLDDILPALPDGMILFSLVCDG-DIVGLMA 82

Query: 99  CSNNLVITLLENLLGASH-----------ETIPQLYNRSLSTVEKKLAKRTIAQISAVL- 146
               L + ++E                       +  R  ++V++ L +    +    L 
Sbjct: 83  FDAQLRMAVVEAQTLGEPYHASMPEPRGEPYHASMPERPRTSVDEVLCQPVADRCITDLI 142

Query: 147 NQCIST------TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVL 199
            + ++        Q     +         +     LS+     + + + I    A S VL
Sbjct: 143 AEALAAPTSGWSVQAWVEGVVCDRPFSGGRDAAFALSHGAYRQMRIGVGISAERAGSLVL 202

Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--------LIDPFARKTYQLNVNIDTRINLKKT 251
           ++P E               +  ++ +              R      V++   ++  + 
Sbjct: 203 LLPVEGARAAVAQRRKLAEDAPARAVEASRSRHAGWSLSINRNVMGAAVDLQAVLHRMRL 262

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302
            L  +     G V+            +      + + +LG+ G    IR+ +
Sbjct: 263 PLSQIEGWAAGDVVMMPGASLAAVRLVGVADTPVGTGQLGKAGGMRAIRMKE 314


>gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88]
 gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88]
          Length = 416

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 99/354 (27%), Gaps = 75/354 (21%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +            +   V+I+     +   + + ++F+    V      S 
Sbjct: 57  KDLLGEIGNISMGSASTALSNIIKQQVNITTPVVSATTLNKLKNTFEVPNIVLEVKYTSG 116

Query: 91  WSSNFFIGCSNNLVITLLENLLGASH-----------------ETIPQLYNRSLSTVEKK 133
                 +         +   ++G                    E + Q+   S +++   
Sbjct: 117 ILGENLLVMKITDAAVVANLMMGGDGIVKDVTSLSEIEVSAVSEAMNQMIGSSATSMATM 176

Query: 134 LAKRT-----IAQISAVLNQCISTTQE---------SSPNLEDFYDIDYLKKNTNRLSNE 179
           L +       I++I   L   +S   +            N+    D   ++     ++ +
Sbjct: 177 LGREVNISPPISKIWDDLTSPLSENIDENETIIKVSFKLNIGTLVDSQIMQLLPMEMAKK 236

Query: 180 FVTTINMNMTIENVASSFVLIIPQETL--------------------------------- 206
            V  +      E +    +  IPQ                                    
Sbjct: 237 IVAIMMGEDIQEEIGEEVMPEIPQVEETQHDLDITGGEELSKTQVEMQREQATYTNESPT 296

Query: 207 ----------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
                         +     Q   +    + +         + ++I   +   K  +K++
Sbjct: 297 YHRETPRVQEKPIEVQEAIFQPLQQTSKGEELPRNIDLIMDVPLDISVVLGRTKLNIKEI 356

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + L  G +I      +    +  NGK +   E+  + +N+ +RITD +N  +K 
Sbjct: 357 LNLGTGSLIELDKLAEEPVEILVNGKPVAFGEVVVIDENFGVRITDIVNNVEKI 410


>gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27]
 gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27]
          Length = 287

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 92/282 (32%), Gaps = 21/282 (7%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +     +      S      +            +++    S   +    +LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEVSNSEESFLKLISAPYARVKISAIEKEESLIELLAPVDLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L        + +    +    
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTTNAEIA 131

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK-----TTLISLSSQNKSE 221
             L K       ++   +  +  +E +  S ++++  E   +            +   + 
Sbjct: 132 KELPKKE-----DYAKAMVFSFKMEAIKESQIILLTTEAFERQFEKTHKEEKEETTQSAT 186

Query: 222 NQSEDLIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
            + +                   + +N+  RI  KK  LKDVV++ IG V+         
Sbjct: 187 EEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDP 246

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
             +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 247 LEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
 gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
          Length = 279

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 16/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            S     V +  S+++      +  S  L+  + E ++G    +     N       K+ 
Sbjct: 39  DSMTPPLVSATFSVNNEMKIKILA-SAVLMSAIGEWMMGEEEISKNSELNEDEMDAAKEA 97

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
            +  I+  S  L        +   +LE+   +       +     F      N+ I ++ 
Sbjct: 98  IQNIISAFSTTLG-AQKEIPKMEFSLENCEFV-----ADSLELGGFHKLYLYNVKIADLE 151

Query: 195 SSFVL--------IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
               L        I+ +  L +    S       +  +             + + I  RI
Sbjct: 152 EKISLVFDEKIYKILTKTDLEEIVAPSEDHTQDHKALANVEELRNIGLIMDVRLPIRVRI 211

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             KK  LKDV+T+ IG VI           +    K+I   E+  V  N+ ++IT+ I  
Sbjct: 212 GSKKMLLKDVLTMDIGSVIELDQLANDPLEILIGDKKIAYGEVVIVDGNFGVQITE-IGS 270

Query: 307 DQKSLKNFL 315
            ++ L+   
Sbjct: 271 KKERLEQLR 279


>gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1]
 gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1]
          Length = 401

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 76/291 (26%), Gaps = 38/291 (13%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHSFKENFVFSQAS 87
            +  +  ++                   VDIS                +   + + ++ S
Sbjct: 139 QVSAVQEAMNQ-MMGSAATSMSTVFSKKVDISPPRVDMLYLPEGEGADAIPHDDLLTKIS 197

Query: 88  LSS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
            S        SN            L++ L   +  +             ++L        
Sbjct: 198 FSLKVGNLIDSNIMQLLPLGFAKQLVDELTNNNDASSTNSDIMEQGASHQEL-------- 249

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
                + +       P+                +  E   + +                 
Sbjct: 250 -----EPVQRVSPVQPSYSQQDTYRDN--TAQHVPQEKTQSQHFGNN------------- 289

Query: 203 QETLLKTTLISLSSQN-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           +       +   S  N +  + S+            + +N+   +     ++KD++ L  
Sbjct: 290 KNVEQPVQVQPASFTNFEQPSMSKPESKNL-DMLLDIPLNVTVELGRTNRSVKDILELSS 348

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G +I           +  N + I   E+  + +N+ +RITD ++   +  K
Sbjct: 349 GSIIELDKLAGEPVDVLVNSRLIAKGEVVVIDENFGVRITDIVSQSDRLKK 399



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/192 (9%), Positives = 60/192 (31%), Gaps = 2/192 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+       + S I   F              
Sbjct: 43  QDTLGEIGNISFGSSATALSTLLNQKVEITTPKVSIQERSRIEEDFPHPYVAIQVQYTEG 102

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +S    +    +    + + +LG               +  ++   + +   +  ++   
Sbjct: 103 FSGANLLVIKQDDAAIIADLMLGGDGLNPSGDLGEIQVSAVQEAMNQMMGSAATSMSTVF 162

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           S   + SP   D   +   +       ++ +T I+ ++ + N + S+ + ++P     + 
Sbjct: 163 SKKVDISPPRVDMLYLPEGEGADAIPHDDLLTKISFSLKVGNLIDSNIMQLLPLGFAKQL 222

Query: 210 TLISLSSQNKSE 221
                ++ + S 
Sbjct: 223 VDELTNNNDASS 234


>gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905]
 gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905]
          Length = 407

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 81/309 (26%), Gaps = 38/309 (12%)

Query: 14  HPILLAR-LTGKLGD---KKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A  + G  G        E   S++     + +           +  VDIS  +  
Sbjct: 121 DAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTID 180

Query: 67  SGKFS--HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
               S      +  E+ +  + S      N      +NL+  L                 
Sbjct: 181 LMNISQNEGRENIPEDDLLVKVSFRLRIGNL---IDSNLMQLL----------------- 220

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR--LSNEFVT 182
                   K ++  +  +             +            +++         + V 
Sbjct: 221 ------PLKFSQNIVKSLLGETESIEEPVAATIAPEAPPIAAPPVQQQAPVMPPPAQPVY 274

Query: 183 TI-NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
                 M             P        +      +   N               + + 
Sbjct: 275 QQPEATMQQPVYQEPQQFAQPARPAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIPLQ 334

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +   K ++K+++ L  G +I           +  N + I   E+  + +N+ +RIT
Sbjct: 335 VTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVRIT 394

Query: 302 DRINFDQKS 310
           D ++  ++ 
Sbjct: 395 DVLSQAERL 403



 Score = 72.7 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 68/227 (29%), Gaps = 5/227 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLD 57
           +RG+++    S      +        +             +G +            +   
Sbjct: 15  LRGETLEDKNSGTEASSIDETNDIRVEDYLDSFAQDALGEVGNISFGSSATALSALLGQK 74

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASH 116
           VDI+  S      + +   F   +V  Q   +   +    +    +    + + +LG   
Sbjct: 75  VDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMNLLVIKQSDAAIIADLMLGGDG 134

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
                       +  ++   + +   +  ++   +   + SP   D  +I   +   N  
Sbjct: 135 LNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTIDLMNISQNEGRENIP 194

Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSEN 222
            ++ +  ++  + I N + S+ + ++P +         L      E 
Sbjct: 195 EDDLLVKVSFRLRIGNLIDSNLMQLLPLKFSQNIVKSLLGETESIEE 241


>gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32]
          Length = 287

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 24/228 (10%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           LV  L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L +
Sbjct: 70  LVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKL-N 122

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN 222
           F  I+           ++   I  +  +E +  S ++++             + Q + E 
Sbjct: 123 FTTINAEIAKELPKKKDYAKMIVFSFKMEALKESQIILLTTVAFEHQFEK--THQEEKEE 180

Query: 223 QSEDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           +++   +                      + +N+  RI  KK  LKDVV++ IG V+   
Sbjct: 181 KTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                   +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287


>gi|207110176|ref|ZP_03244338.1| flagellar motor switch protein FliM [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 125

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 2/125 (1%)

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARK 234
            NE    + + + I +      +  P  ++        S        N  +         
Sbjct: 1   QNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQAL 60

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              ++V++   +   + +LK+++ L +G  I           +  + K+ Y   +G  G 
Sbjct: 61  LSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGY 120

Query: 295 NYTIR 299
             TI+
Sbjct: 121 RKTIQ 125


>gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs]
 gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alkaliphilus oremlandii OhILAs]
          Length = 385

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/352 (10%), Positives = 94/352 (26%), Gaps = 69/352 (19%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88
             +     +G +            +   V I+    Q      +   +   +V       
Sbjct: 32  EEKDAIGEIGNISMGTAATTLSTLLGQKVTITTPRVQVLTIEELSKKYPLPYVAVDVKYK 91

Query: 89  SSWSSNFFIGCSNNLVIT----------------LLENLLGASHETIPQLYNRSLSTVEK 132
                   +    + V                  L E  L A  E + Q+   S +++ +
Sbjct: 92  EGLEGTNLLILKEDDVSIITDLMMGGNGEVGAVELTELHLSAIGEAMNQMVGSSATSLSE 151

Query: 133 KLAKRT-------------IAQISAVLNQCISTTQESSPNLEDFYDI--DYLKKNTNRLS 177
             +K+                 +  +      +  + S  +     I  + ++      +
Sbjct: 152 IFSKKIDISPPDAFLLNLATDNLLELFKDNSQSLVQISFRMVIGELIDSEIMQLMPINFA 211

Query: 178 NEFVTTINMNMTIENVASSFV----------------LIIPQETL--------------- 206
            E +  +  NM       +                   + P+E                 
Sbjct: 212 KEIIGGLFDNMAKGQEDKTVNDRNNTVPSNVKPAQKDTMHPREMSYDTPNYDHRANFSNE 271

Query: 207 ------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
                     +  +  Q   ++  + ++         + + I   +      + +++   
Sbjct: 272 AAATRNEPVNIRPVQFQAFDDDSVKGVMPENISLIQDVPLKITVELGRTVKKISEILEFG 331

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            G +I           +  NG+ + + E+  + +NY IR+TD +N  ++  K
Sbjct: 332 PGTIIELDKLVGEPLDILVNGQYVANGEVVVIDENYGIRVTDIVNPAKRLSK 383


>gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 290

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 14/280 (5%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +     +      S      +            +++    S+  +     LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEISSSDESFLKLISAPYARVKISAIEKEESSIELLAPVVLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ----------CISTTQES 156
           L + +LG    +  ++ N  L   ++ +A      I+  L             I+     
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQELLPKLNFTTINAEIAK 132

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
               ++ Y    +         E    +      E+          +E    T   +   
Sbjct: 133 ELPKKEDYAKAMVFSFKMEAIKESQIILLTTTAFEHQFEKTHQEEKEEKEETTQSTAEEI 192

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +    +     I   +     + +N+  RI  KK  LKDVV++ IG V+           
Sbjct: 193 KTHDASLENIEIRNISM-LLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLE 251

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 252 ILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 290


>gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514]
 gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X561]
 gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Thermoanaerobacter sp. X513]
 gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514]
 gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X561]
 gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X513]
          Length = 375

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/343 (10%), Positives = 95/343 (27%), Gaps = 56/343 (16%)

Query: 24  KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV- 82
                +  + I   +G +            +   V I+        +  +   F   +V 
Sbjct: 29  GKELTEEEQDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNIPYVG 88

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENL----------------LGASHETIPQLYNRS 126
                      +  +      V+ + + +                L A  E + Q+   +
Sbjct: 89  VEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEGKIEEGEITELHLSAIGEAMNQMIGSA 148

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN--RLSNEFVTTI 184
            +++   L K              + +  +  +  +   +    K      + +E +  +
Sbjct: 149 ATSLSTLLNKTINISPPKAFIVDFTASMPTDISFPEGDVVKIAFKMEVGEIIDSEIMQLL 208

Query: 185 NM-------------------------------------NMTIENVASSFVLIIPQETLL 207
                                                  N+   +  S+   +  ++  +
Sbjct: 209 PFDFAKELVHSVLSKNEEKSPQATSQEESSSAIIESDEKNVETGSNISTRDKVTKKKQKV 268

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
             + +   S ++                  + + I   +   K  +KD++ L  G +I  
Sbjct: 269 NVSPVVFQSFDEEPTSKSKEDKENLELILDVPLTITVELGKTKKLIKDILELSEGSIIEL 328

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                    + ANGK I   E+  + +N+ +RITD ++  ++ 
Sbjct: 329 DKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHQSKRI 371


>gi|260544318|ref|ZP_05820139.1| flagellar motor switch protein FliM [Brucella abortus NCTC 8038]
 gi|260757052|ref|ZP_05869400.1| flagellar motor switch protein FliM [Brucella abortus bv. 6 str.
           870]
 gi|260759577|ref|ZP_05871925.1| flagellar motor switch protein FliM [Brucella abortus bv. 4 str.
           292]
 gi|260762821|ref|ZP_05875153.1| flagellar motor switch protein FliM [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882862|ref|ZP_05894476.1| flagellar motor switch protein FliM [Brucella abortus bv. 9 str.
           C68]
 gi|261215633|ref|ZP_05929914.1| flagellar motor switch protein FliM [Brucella abortus bv. 3 str.
           Tulya]
 gi|260097589|gb|EEW81463.1| flagellar motor switch protein FliM [Brucella abortus NCTC 8038]
 gi|260669895|gb|EEX56835.1| flagellar motor switch protein FliM [Brucella abortus bv. 4 str.
           292]
 gi|260673242|gb|EEX60063.1| flagellar motor switch protein FliM [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260677160|gb|EEX63981.1| flagellar motor switch protein FliM [Brucella abortus bv. 6 str.
           870]
 gi|260872390|gb|EEX79459.1| flagellar motor switch protein FliM [Brucella abortus bv. 9 str.
           C68]
 gi|260917240|gb|EEX84101.1| flagellar motor switch protein FliM [Brucella abortus bv. 3 str.
           Tulya]
          Length = 233

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 70/211 (33%), Gaps = 4/211 (1%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H   +      L R  G  GD   ++ ++         F  +  K+      D    S 
Sbjct: 8   EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +S   +     F +  + +      W  + ++     LV +++E + GA     P   + 
Sbjct: 65  ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADH 124

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               VE+K+A      ++  L++  +T+    P       ID    +        + T  
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS 216
           + +T         L++P+ T  +  +     
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTQKRCRMQLPPF 214


>gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83]
          Length = 287

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 29/286 (10%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSF--KENFVFSQASLSSWSSNFFIGCSNNLVI 105
              +  +     +     +         S           +++    S+  +     LV 
Sbjct: 14  STLEGLVGKAPSVGLEK-EVSNSEEAWGSLISAPYARVVISAIEKEESSIELLTPVVLVT 72

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
            L + +LG    +  ++ N  L   ++ +       I+  L       QE  P L   + 
Sbjct: 73  ALSDLMLGGEGASKEEMDNDDLDAFKE-MTSNIFGAIATSLKS-----QELLPKLN--FT 124

Query: 166 IDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224
               +        E     I  +  +E +  S ++++             + Q + E ++
Sbjct: 125 TINAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTVAFEHQFEK--THQEEKEEKT 182

Query: 225 EDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +   +                      + +N+  RI  KK  LKDVV++ IG V+     
Sbjct: 183 KSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|254510732|ref|ZP_05122799.1| Surface presentation of antigens protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534443|gb|EEE37431.1| Surface presentation of antigens protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 376

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 85/293 (29%), Gaps = 16/293 (5%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            L  +L+       T   +  +L     +   +     M L + +            +  
Sbjct: 17  ALARKLSAGQSGADTPRSVLRALRLGLARAAGEG----MGLALSVIGARQAVRAQEDLGE 72

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
             K+ ++    +                V  +++    A          R  +  +  + 
Sbjct: 73  RLKDGWLLLLFTSDQ-GGVAAACLDPGCVSAIVQQQTIAMV-IPDPPAERPFTDTDAAMV 130

Query: 136 KRTIAQISAVLNQCISTTQESSPN--LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
              +        + + +  + +     E     +  +     L +E     ++ + +   
Sbjct: 131 APLVEDTLGRALKLVESPADMTSLSGFEYASRAEDQRSLILALVDEAYRVFDLTVELAGG 190

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
           A    + I    LL    +S   Q     QS   +D  A    +    ++T I+     L
Sbjct: 191 ARQGEVCI----LLPERPLSDGEQATDTAQSGLSLDQ-ASGVMRAE--LNTVISRMSVPL 243

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYS-CELGRVGKNYTIRITDRIN 305
             +  L +G ++P          + +  +   +   LG+      IRI + ++
Sbjct: 244 TALSNLSVGDILPLQGARVDRVEVLSIDRARATVGRLGQCSGMRAIRINETLS 296


>gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 89/285 (31%), Gaps = 27/285 (9%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN---FVFSQASLSSWSSNFFIGCSNNLV 104
              +  +     +      S                 + S       S          LV
Sbjct: 14  STLEGLVGKAPSVGLEKEVSHSEEAWESLISTPYARVMVSVIEKEESSIELLAPVD--LV 71

Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
             L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   +
Sbjct: 72  TALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--F 123

Query: 165 DIDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK------TTLISLSSQ 217
                +        E     +  +  +E +  S ++++      +            ++Q
Sbjct: 124 TTINAEIAKELPKKEDYAKAMVFSFKMEAITESQIILLTTAAFERQFEKTHKEEKEETTQ 183

Query: 218 NKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             +E            +         + +N+  RI  KK  LKDVV++ IG V+      
Sbjct: 184 GAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287


>gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
 gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
          Length = 287

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 24/228 (10%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           LV  L + +LG    +  ++ N  L   ++ +A      I+  L        + +    +
Sbjct: 70  LVTALSDLMLGGEGASKEEMNNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTTN 127

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN 222
                 L K       ++   +  +  +E +  S ++++      +      + Q + E 
Sbjct: 128 AEIAKELPKKE-----DYAKMMVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEE 180

Query: 223 QSEDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            ++   +                      + +N+  RI  KK  LKDVV++ IG V+   
Sbjct: 181 TTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                   +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287


>gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
 gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
          Length = 432

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 79/316 (25%), Gaps = 41/316 (12%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHS 76
           A L G++      E ++  +G                  VDIS  +              
Sbjct: 134 AELMGEIQLSAVQEAMNQMMG-----SAATSMSTIFGKKVDISPPAIDILDLPQGEGADR 188

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
              + +  + S      +      +N ++ LL    G S         + L        +
Sbjct: 189 VPADDMLIRISFRLKIGSL---IDSN-IMQLLPLEFGKSLVNELLNPGQDLPADSAVSGE 244

Query: 137 RTIAQISAVLNQC---ISTTQESS-----------------PNLEDFYDIDYLKKNTNRL 176
              AQ      +         E                   P                  
Sbjct: 245 NQAAQGQPDYQESQLPFDKKPEVQTGGLDKSYTQTGFSGEQPAYSQPVMNQASSPQNYIP 304

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
           +                +            ++  +   +  +      +D          
Sbjct: 305 AQNQAQ----------QSGPQHFGGSYANGVQPNVQPAAFSSFEPYHMQDHETKNLDMLL 354

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + + +   +   K ++K+++ L  G +I           +  N + I   E+  + +N+
Sbjct: 355 DIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNNRLIAQGEVVVIDENF 414

Query: 297 TIRITDRINFDQKSLK 312
            +R+TD I+   +  K
Sbjct: 415 GVRVTDIISQSDRIKK 430



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/177 (9%), Positives = 55/177 (31%), Gaps = 2/177 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
               +     +G +            ++  VDI+  +        +   F          
Sbjct: 41  SHMEQDALGEIGNISFGSSATALSTLLNQKVDITTPAVSVVLRQKLAEEFPHPYVAIQVN 100

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
               +  +  +    +    + + +LG       +L      +  ++   + +   +  +
Sbjct: 101 YTEGFFGSNLLVIQQSDAAIIADLMLGGDGTNPAELMGEIQLSAVQEAMNQMMGSAATSM 160

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP 202
           +       + SP   D  D+   +      +++ +  I+  + I + + S+ + ++P
Sbjct: 161 STIFGKKVDISPPAIDILDLPQGEGADRVPADDMLIRISFRLKIGSLIDSNIMQLLP 217


>gi|159043958|ref|YP_001532752.1| hypothetical protein Dshi_1409 [Dinoroseobacter shibae DFL 12]
 gi|157911718|gb|ABV93151.1| hypothetical protein Dshi_1409 [Dinoroseobacter shibae DFL 12]
          Length = 349

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 71/247 (28%), Gaps = 9/247 (3%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S     +   + +     +  +    +     +  F   S+  +  L+E        +  
Sbjct: 61  SVQVVDTDGVAGLAEQMADVALLIPCNAPD-GAEGFAALSSGGMTGLVEKTTTGRI-SPG 118

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQ--CISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
           +   R  S++++ L +  I +      +    ++ +           +      +    +
Sbjct: 119 EPEPRDASSIDQLLCRGFIERFFEAWGELLAGTSHEAWLAGYAPTDGMMQPDVLSVSAPD 178

Query: 179 EFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
                  +    +     +F + +P     +     L     +   + +    +     +
Sbjct: 179 IPYRLYLITAQFDGLREVAFSVALPVS---RPRPADLVETGDAARSTGEWAKDWRAAVLE 235

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNY 296
               +D  +   + +L +V     G  +       +   L   NG  + +  LG+     
Sbjct: 236 SPAELDAVLCKLELSLDEVRRWAPGDRVSIPASALSSVSLGRRNGPSVATARLGQARGVR 295

Query: 297 TIRITDR 303
            +R+ + 
Sbjct: 296 ALRLNEI 302


>gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 375

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 35/76 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   + T++D++ L  G VI           +  NGK I   E+  + +
Sbjct: 296 IMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAKGEVVVIDE 355

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RITD ++  ++ 
Sbjct: 356 NFGVRITDIVSPIERI 371



 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 4/166 (2%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLLENLL 112
           M   VDI+         + +   +   FV       +    N  +    + V  +++ ++
Sbjct: 1   MGKKVDITTPRVYVTTKAALQKDYPSPFVVVDVTYTAGLEGNNVLIIRESDVAIIVDLMM 60

Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
           G    + P   N    +   +   + +   +  +   +    + SP +     ID+  + 
Sbjct: 61  GGDGMSPPAELNEIHFSAISEAMNQMMGSAATSMATMLQKKIDISPPM--LNTIDFASEK 118

Query: 173 TNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQ 217
             R   + V  ++  M IE  V S  + I P     +     +   
Sbjct: 119 LPRPDVDPVIKVSFRMVIEGLVDSELMQIYPIPFAKQLVSGLMGDM 164


>gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
          Length = 502

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 95/315 (30%), Gaps = 26/315 (8%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68
            L  RL G    +K    +++    ++ +           +  + ++  V +   + +  
Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248

Query: 69  KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
                  + +   + +         S+     S N  + + + ++    +         L
Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307

Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  ++L  + +   +  +++ + T  + SP  +E     D + +              
Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230
           + +        + +  P        L+      +  N               + ++ +  
Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKANTQEMEPEMPLPIEEKETLSE 427

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + V ++      K  L+  ++     VI          +L  NG  I    L 
Sbjct: 428 MEAILEDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKGILV 487

Query: 291 RVGKNYTIRITDRIN 305
           RV  ++ I++T+ + 
Sbjct: 488 RVDDHFGIQMTELVR 502


>gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
 gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
          Length = 354

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 87/326 (26%), Gaps = 56/326 (17%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSN 94
             L +L+ K   +     +  D++IS           + +   E  VF      S  + N
Sbjct: 20  EELIHLHAKAAGESLSSILKADIEISSPEITEITVKEVEYGILEPAVFVKSCLTSGVAGN 79

Query: 95  FFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTT 153
             +      +   L  L+G      P      ++ +   +L  + +      + + +  T
Sbjct: 80  TVMILRQRDMQAFLNELMGIDDLPDPDFEFDEVAMSAAAELMNQMVHASVEAMAEYLGNT 139

Query: 154 QE-SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT-- 209
            E S   L        L              I+  + I++ V S F+  I          
Sbjct: 140 MESSDCQLILSDGRQNLSPAIGEAPESKTIVIHYRVKIKDMVESEFMECISITAADSIYQ 199

Query: 210 --------------------------------------TLISLSSQNKSENQS------- 224
                                                      S        S       
Sbjct: 200 EIGARREAEKRAEAEAKAMEESLFVKPVQQGAAPAAAGRESLQSGMESRTANSVTADTGH 259

Query: 225 --EDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                             + +N+   I   +  LKDV+    G V+    +      +  
Sbjct: 260 AVYQASPSINGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIV 319

Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305
           NG+ I   E+  +  N+ +RI++ +N
Sbjct: 320 NGQLIARGEVVVIDDNFGVRISEIVN 345


>gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12]
 gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12]
          Length = 287

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 23/283 (8%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +   + +      S      +            +++     +  +     LV  
Sbjct: 14  STLEGLVGKALSVGLEKEISSSDESFLKLISAPYARVKISAIEKEEGSIELLAPVVLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   +  
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125

Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK---------TTLISLSS 216
              +        E     +  +  +E +  S ++++  E   +             +  +
Sbjct: 126 INAEIAKEFPKKEDYAKAMVFSFKMEAIKESQIILLTTEAFERQFEKMHKEEKEETTEGA 185

Query: 217 QNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
             + +     L +   R       + +N+  RI  KK  LKDVV++ IG V+        
Sbjct: 186 TEEVKAHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 245

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 246 PLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str.
           Sheeba]
 gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 283

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 77/230 (33%), Gaps = 28/230 (12%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            LV TL + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L 
Sbjct: 67  GLVTTLSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN 120

Query: 162 DFYDIDYLKKNTNRLSNE---FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
             +     +        E        +  M     +   +L+    T           ++
Sbjct: 121 --FTTTNAEIAKELPKKEDYAKAVVFSFKMEALKESQMILLV----TTDFINQFETKKEH 174

Query: 219 KSENQSEDLIDPFARK------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
             E       D                    + +N+  RI  KK  LKDVV++ IG V+ 
Sbjct: 175 NEEGTKVVREDKIQDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVE 234

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                     +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 235 LDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 283


>gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
          Length = 502

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 94/315 (29%), Gaps = 26/315 (8%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68
            L  RL G    +K    +++    ++ +           +  + ++  V +   + +  
Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248

Query: 69  KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
                  + +   + +         S+     S N  + + + ++    +         L
Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307

Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  ++L  + +   +  +++ + T  + SP  +E     D + +              
Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230
           + +        + +  P        L+      +  N               + ++ +  
Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADMQEIEPEMPLPIEEKETLSE 427

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + V ++      K  L+  ++     VI           L  NG  I    L 
Sbjct: 428 MEAILEDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILV 487

Query: 291 RVGKNYTIRITDRIN 305
           RV  ++ I++T+ + 
Sbjct: 488 RVDDHFGIQMTELVR 502


>gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
 gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
          Length = 502

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 94/315 (29%), Gaps = 26/315 (8%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68
            L  RL G    +K    +++    ++ +           +  + ++  V +   + +  
Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248

Query: 69  KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
                  + +   + +         S+     S N  + + + ++    +         L
Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307

Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  ++L  + +   +  +++ + T  + SP  +E     D + +              
Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230
           + +        + +  P        L+      +  N               + ++ +  
Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADTQEMKPEMPLPIEEKETLSE 427

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + V ++      K  L+  ++     VI           L  NG  I    L 
Sbjct: 428 MEAILEAIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILV 487

Query: 291 RVGKNYTIRITDRIN 305
           RV  ++ I++T+ + 
Sbjct: 488 RVNDHFGIQMTELVR 502


>gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61]
 gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC52]
 gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC61]
 gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC52]
          Length = 393

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 84/313 (26%), Gaps = 44/313 (14%)

Query: 14  HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A L     G   D    E   S++     + +              VDIS  +  
Sbjct: 109 DAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFGKRVDISPPTLH 168

Query: 67  SGKFSHI--IHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119
               +    +    +     + S          S+       +    L+  LLG+  E  
Sbjct: 169 LLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKELVAQLLGSPLEEP 228

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                   S+ + +                        P  E      Y + N     +E
Sbjct: 229 GAAEVNLKSSADAR------------------------PFSEPQPVPTYAQANGGAAVSE 264

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
             +                         +    +   +  +   +           + + 
Sbjct: 265 AASRSTDEPPAGRADKERD-----GATARHIQTADFVEFDAPPLAATEARNL-ELLFDVP 318

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   K ++++++ L  G +I           +  N K I   E+  + +N+ +R
Sbjct: 319 LQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENFGVR 378

Query: 300 ITDRINFDQKSLK 312
           ITD I+   +  K
Sbjct: 379 ITDIISQSDRLTK 391



 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/201 (9%), Positives = 58/201 (28%), Gaps = 2/201 (0%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+  S    + + +   F +            
Sbjct: 37  QDALGEIGNISFGSSATALSMLLNQKVEITTPSVSIIERTSVADEFPQPYVAIQVNYTEG 96

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 +         + + +LG               +  ++   + +   +  ++   
Sbjct: 97  LLGTNLLVIKQQDAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVF 156

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
               + SP      D+   K        +F+  ++  + I   + SS + ++P +   + 
Sbjct: 157 GKRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKEL 216

Query: 210 TLISLSSQNKSENQSEDLIDP 230
               L S  +    +E  +  
Sbjct: 217 VAQLLGSPLEEPGAAEVNLKS 237


>gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695]
 gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695]
          Length = 287

 Score = 86.2 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 94/283 (33%), Gaps = 23/283 (8%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +     +      S      +            +++    S+  +     LV +
Sbjct: 14  STLEGLVGKAPSVGLEKEISSSDESFLKLISTPYARVVISAIEKEESSIELLAPVVLVTS 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   +  
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125

Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLL---------KTTLISLSS 216
              +        E     +  +  +E +  S ++++               +    +   
Sbjct: 126 INAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTAAFEGQFEKTHKEEKEETTEGV 185

Query: 217 QNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
             + +     L +   R       + +N+  RI  KK  LKDVV++ IG V+        
Sbjct: 186 AEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 245

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 246 PLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|89070387|ref|ZP_01157694.1| possible flagellar switch protein FliM [Oceanicola granulosus
           HTCC2516]
 gi|89044034|gb|EAR50209.1| possible flagellar switch protein FliM [Oceanicola granulosus
           HTCC2516]
          Length = 381

 Score = 86.2 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 78/293 (26%), Gaps = 32/293 (10%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           LAR     G+      ++ +          +  +      V +   S  +     ++   
Sbjct: 2   LARKARVGGEAAASGVVTPARALRLA--FARAVERVAGAQVAVVAVSEAALVLDEVVARL 59

Query: 78  K-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             ++ V + A     S          L   L+E     +    P    R +S  +  L +
Sbjct: 60  GTDDLVLALAGAEGVSG--LAALDPELRSALVECQTTGAVSPEPAPE-RPVSVADAALTR 116

Query: 137 RTIAQISAVLNQC--------ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             +      L                 ++  L+           +   +   +  + +++
Sbjct: 117 PVVDAFLEELLAAAAPTALAGWGEGVATAGRLDGARGA----GLSLAEAGYRLVALTVDL 172

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
                    ++ +P              +      + D    FAR        +   ++ 
Sbjct: 173 GAGTREGRLLVALPA-------------REAPAPTASDWSGQFARAVQAAPAELRAVLHR 219

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRI 300
            +  L+    L  GQV+P          L  A    +    LG+      IR+
Sbjct: 220 FELPLERAEALAPGQVLPLEGVTVASVRLEGAERALVGHARLGQSAGLKAIRL 272


>gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 502

 Score = 86.2 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 94/315 (29%), Gaps = 26/315 (8%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68
            L  RL G    +K    +++    ++ +           +  + ++  V +   + +  
Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248

Query: 69  KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
                  + +   + +         S+     S N  + + + ++    +         L
Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307

Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  ++L  + +   +  +++ + T  + SP  +E     D + +              
Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230
           + +        + +  P        L+      +  N               + ++ +  
Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADMQEIEPEMPLPIEEKETLSE 427

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + V ++      K  L+  ++     VI           L  NG  I    L 
Sbjct: 428 MEAILEDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILV 487

Query: 291 RVGKNYTIRITDRIN 305
           RV  ++ I++T+ + 
Sbjct: 488 RVDDHFGIQMTELVR 502


>gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
 gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
          Length = 393

 Score = 86.2 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 85/313 (27%), Gaps = 44/313 (14%)

Query: 14  HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A L     G   D    E   S++     + +              VDIS  +  
Sbjct: 109 DAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFGKRVDISPPTLH 168

Query: 67  SGKFSHI--IHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119
               +    +    +     + S          S+       +    L+  LLG+  E  
Sbjct: 169 LLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKELVAQLLGSPLEEP 228

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                   S+ + +                        P  E      Y + N     +E
Sbjct: 229 GAAEVNLKSSADAR------------------------PFSEPQPVPTYAQANGGAAVSE 264

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
             +      +                  +    +   +  +   +           + + 
Sbjct: 265 AASRSTDEPSAGRADKDRD-----GATARHIQTADFVEFDAPPLAATEARNL-ELLFDVP 318

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   K ++++++ L  G +I           +  N K I   E+  + +N+ +R
Sbjct: 319 LQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENFGVR 378

Query: 300 ITDRINFDQKSLK 312
           ITD I+   +  +
Sbjct: 379 ITDIISQSDRLTR 391



 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/201 (9%), Positives = 58/201 (28%), Gaps = 2/201 (0%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+  S    + + +   F +            
Sbjct: 37  QDALGEIGNISFGSSATALSMLLNQKVEITTPSVSMIERTSVADEFPQPYVAIQVNYTEG 96

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 +         + + +LG               +  ++   + +   +  ++   
Sbjct: 97  LLGTNLLVIKQKDAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVF 156

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
               + SP      D+   K        +F+  ++  + I   + SS + ++P +   + 
Sbjct: 157 GKRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKEL 216

Query: 210 TLISLSSQNKSENQSEDLIDP 230
               L S  +    +E  +  
Sbjct: 217 VAQLLGSPLEEPGAAEVNLKS 237


>gi|258516873|ref|YP_003193095.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780578|gb|ACV64472.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 331

 Score = 86.2 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 82/293 (27%), Gaps = 19/293 (6%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
                     +G +          + ++  V I        K   +  SF   ++    S
Sbjct: 31  SHHQLDTIGEVGNISMGTAATTLSQILNQRVTIGNPRVIVCKQEEVFKSFATPYLLVYVS 90

Query: 88  L-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAV 145
                +    +  + N V T+   +LG      P +    L  +  ++   + I  +   
Sbjct: 91  FKEGLTGFNVLIITENEVATIANLMLGGDGNIPPVVELSELEISAAQEAMNQMIGSVCTA 150

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLIIPQ 203
           +        + +P              T   + + V  +  +  I N+   +   ++   
Sbjct: 151 MTDMFGIPIDITPPTITMVHDIKNASLTPLPTEQPVVVVRFDTFISNILKTTIMQILSVD 210

Query: 204 ETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQL------------NVNIDTRINLK 249
               +   +   +   +K      +  +    +                 VN+   +   
Sbjct: 211 AAQEEANYLLQKAGYMDKEAEIVANNANSDNDQVAVASKLPNLTAALSLPVNLTVVLGKT 270

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            +T++++  L+IG+ +        C  + A    +   +L        + I  
Sbjct: 271 LSTVEELARLEIGKKLTLPLSA-ECVEIYAGDTLVGKGKLIDQKGKMQVEINQ 322


>gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
 gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
          Length = 360

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +N+   +     T++D++ L  G +I           L  NGK I   E+  + +
Sbjct: 280 LMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE 339

Query: 295 NYTIRITDRINFDQKSLK 312
           N+ +R+TD IN   +   
Sbjct: 340 NFGVRVTDIINPMDRLTN 357


>gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 286

 Score = 85.8 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 84/279 (30%), Gaps = 17/279 (6%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107
              +    +   +     +S      +           +          +  + ++   +
Sbjct: 14  STIEGLTGIAPQVELNKEEST--ESKLRLSPPLARLDVSVGGDMHGRMRVTVATSIATAI 71

Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
            + +LG       ++    L   ++ +    ++  S  L        +   ++E    ID
Sbjct: 72  GDMMLGGEGLEKEEMDAEDLDATKE-IVSNILSSFSRSLASQ-KNMPKLEFDIESVEYID 129

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
              +       E +   N+ + + +   +F +      L++      + +      +   
Sbjct: 130 ANSEIEF-RGYEKLFIYNLAIHMSHDTIAFAISSELTPLVEDMPRMDTPKESIPESALIE 188

Query: 228 IDPF-----------ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                                + + I  RI  KK  LKDV+++ IG VI           
Sbjct: 189 PKKVVPSMSPEEISNIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLE 248

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +    K I   E+  V  N+ ++I + I   ++ L+   
Sbjct: 249 ILVGDKVIAMGEVVIVDGNFGVQIGE-IGTKRERLEKLR 286


>gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
           12563]
 gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
           12563]
          Length = 359

 Score = 85.8 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +N+   +     T++D++ L  G +I           L  NGK I   E+  + +
Sbjct: 279 LMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE 338

Query: 295 NYTIRITDRINFDQKSLK 312
           N+ +R+TD IN   +   
Sbjct: 339 NFGVRVTDIINPMDRLTN 356


>gi|255262288|ref|ZP_05341630.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255104623|gb|EET47297.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 326

 Score = 85.8 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 79/269 (29%), Gaps = 25/269 (9%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
            +  + + +     + + V +            +     E    +   +    +   + C
Sbjct: 28  DVLARAMRRAADFVVGMPVLLKGGEASEVSLVELAEQLNEQD-LTMMLIGRDGARAIMTC 86

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN---------QCI 150
              +V  L+E        T      R ++  +  L    + Q+   ++           +
Sbjct: 87  DGPMVSALIEMSTIGHVTT-ANSAARRMTRTDVALITPFLGQVLVEVSGGDADVPVTSLM 145

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           S   E +  L+       + +         V  +++ +   +     +L +P+       
Sbjct: 146 SGYDEMTRVLDVCTVELIMPQVQ-----YHVYDLSLELGQGSKTGRVMLCLPKRASQDEK 200

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +        +++ +++           L   +D  ++     L +V    +G +I     
Sbjct: 201 I--------AQDTAKNWKASVEATVLDLPSQLDAVLHTVSMPLSEVRAFAVGDMIKMAAS 252

Query: 271 EKTCAILS-ANGKEIYSCELGRVGKNYTI 298
                 +   + + I +  LG+V     +
Sbjct: 253 SLKTVQVRGLDSQTITTARLGQVHGTRAL 281


>gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3]
 gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. C56-T3]
          Length = 393

 Score = 85.8 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 84/313 (26%), Gaps = 44/313 (14%)

Query: 14  HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A L     G   D    E   S++     + +              VDIS  +  
Sbjct: 109 DAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFGKRVDISPPTLH 168

Query: 67  SGKFSHI--IHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119
               +    +    +     + S          S+       +    L+  LLG+  E  
Sbjct: 169 LLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKELVAQLLGSPLEEP 228

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                   S+ + +                        P  E      Y + N     +E
Sbjct: 229 GAAEVNLKSSADAR------------------------PFSEPQPVPTYAQANGGAAVSE 264

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
             +                         +    +   +  +   +           + + 
Sbjct: 265 AASRSTDEPPAGRADKERD-----GATARHIQTADFVEFDAPPLAATEARNL-ELLFDVP 318

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   K ++++++ L  G +I           +  N K I   E+  + +N+ +R
Sbjct: 319 LQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENFGVR 378

Query: 300 ITDRINFDQKSLK 312
           ITD I+   +  +
Sbjct: 379 ITDIISQSDRLTR 391



 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/201 (9%), Positives = 58/201 (28%), Gaps = 2/201 (0%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+  S    + + +   F +            
Sbjct: 37  QDALGEIGNISFGSSATALSMLLNQKVEITTPSVSIIERTSVADEFPQPYVAIQVNYTEG 96

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 +         + + +LG               +  ++   + +   +  ++   
Sbjct: 97  LLGTNLLVIKQQDAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVF 156

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
               + SP      D+   K        +F+  ++  + I   + SS + ++P +   + 
Sbjct: 157 GKRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKEL 216

Query: 210 TLISLSSQNKSENQSEDLIDP 230
               L S  +    +E  +  
Sbjct: 217 VAQLLGSPLEEPGAAEVNLKS 237


>gi|307720639|ref|YP_003891779.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
 gi|306978732|gb|ADN08767.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
          Length = 294

 Score = 85.8 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 92/285 (32%), Gaps = 26/285 (9%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITL 107
             +  +     +     Q      II +     V  +  +S    ++  I    NL  +L
Sbjct: 15  TIEALIGTAPSLELKEEQELS---IISNIVPPIVLVKIKVSGDVDADAMIALPPNLAASL 71

Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
            + ++G        +    L   ++ +       IS  L          S ++E+   + 
Sbjct: 72  SDMMMGEEASDREDVSEDDLDAAKE-IVSNIFGAISNTL-SAQKELPVLSFSIENIELVG 129

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSF-------VLIIPQET------LLKTTLISL 214
              + +    +        N+   +    F        ++ P +T      + +    + 
Sbjct: 130 DDDEVSLEAFSRMYV-YKFNLESVHSLLMFIIDEKLKNVLFPSDTSSESAEIEENRSTAA 188

Query: 215 SSQNKSENQSED---LIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
           +S + S N  ED     +          + + +  RI  K+  LKDV+ + IG VI    
Sbjct: 189 ASSHISSNCEEDITLSNEEMKNIALIMDVKLPVRVRIGKKRMLLKDVLNMDIGSVIELNQ 248

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                  +  +   +   E+  V  N+ I++T  I   ++ L   
Sbjct: 249 LANDPLEILVDNHVVAQGEVVIVDGNFGIQVT-TIGTKKERLTQL 292


>gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori
           Gambia94/24]
          Length = 285

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 20/232 (8%)

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI------ 150
           +    +LV  L + +LG    +  ++ N  L   ++ +A      I+  L          
Sbjct: 62  LLAPADLVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQELLPKLN 120

Query: 151 ------STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
                    +E     +    + +  K      ++ V         E     F     +E
Sbjct: 121 FTTTNAEIAKELPKKEDYAKAMVFSFKMEAIKESQIVLLTT-----EAFEGQFEKTHKEE 175

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
               T   +  ++    +     I   +     + +N+  RI  KK  LKDVV++ IG V
Sbjct: 176 KEETTKSATEETKTHDASLENIEIRNISM-LLDVKLNVKVRIGQKKMILKDVVSMDIGSV 234

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +           +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 235 VELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 285


>gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulovorans 743B]
 gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B]
 gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulovorans 743B]
          Length = 400

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 1/103 (0%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              +   + Q      ++ L +        + +NI   +   + ++KD+++L  G +I  
Sbjct: 294 PVEVSKATFQPLRTADTKSLPNNI-DLIMDVPLNISVVLGKTRKSIKDILSLNNGSLIEL 352

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
               +    +  NGK+I   E+  V +N+ +RIT  ++ + + 
Sbjct: 353 DKLAEEPVEILVNGKKIAYGEVVVVDENFGVRITSIVSSEDRI 395



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 58/194 (29%), Gaps = 2/194 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +          + ++  V+I+           + + F           +S 
Sbjct: 36  KDLLGEIGNISMGSASTALSQIINQPVNITTPVVTVTTLEKLKNEFTIPNIALDIKYISG 95

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 +         +   ++G   +      +    +  ++   + I   +  +   +
Sbjct: 96  IKGENLLVMKTIDASVIANLMMGGDGKVENIELSELEVSAVQEAMNQMIGSAATSMATML 155

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           S     SP     ++      +      E +  +   MTI + V S+ + I P ET    
Sbjct: 156 SREINISPPDSKIWNDSNDSLSETIDEKEDIIKVAFKMTIGDLVDSTIMQIYPLETSKNI 215

Query: 210 TLISLSSQNKSENQ 223
             I +   +   +Q
Sbjct: 216 CSIMMGEADDDIDQ 229


>gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
 gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
          Length = 436

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 74/302 (24%), Gaps = 25/302 (8%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHSFKENFVFSQASL 88
           I  +  ++                +  V+IS              + S  +       S 
Sbjct: 138 ISAVQEAMNQ-MMGSSATSMSTMFNRFVNISPPGIDILDPMHGDGVSSLPDEETLITVSF 196

Query: 89  SSWSS-----NFFIGCSNNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
                             N    ++  L+ G   E  PQ   + ++      A +  +  
Sbjct: 197 RLLIGDLIDSTLMQLLPVNFAKKMVSILMNGGEDEEQPQASAQQVAATAAPEASQQASVP 256

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
                        ++   +D                +                     +P
Sbjct: 257 QQPPAPAYQQPPAAAQAPQDAGYGQQPP----MYPQDPGYGQQGAPGYGTPGYGMPAGVP 312

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFA------------RKTYQLNVNIDTRINLKK 250
            +    T     +   ++ N                           + + +   +   +
Sbjct: 313 PQAPYGTPHHYGAVPGRNVNVQPVQFSNLQSGAFAQVDENNLNLLMDIPLRVTVELGRTQ 372

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +KD++ L  G +I           +  N K I   E+  + +N+ +R+TD ++   + 
Sbjct: 373 KQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVTDIVSQWDRI 432

Query: 311 LK 312
            K
Sbjct: 433 QK 434



 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/200 (10%), Positives = 60/200 (30%), Gaps = 2/200 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            +   VDI+         S    +F +         +  
Sbjct: 41  QDALGEIGNITFGSAATALSTLLGQKVDITTPKVSIITRSEFETAFPKPHVAVHVNYVDG 100

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + +LG     + +  N    +  ++   + +   +  ++   
Sbjct: 101 FEGINSLVIKKRDAQVIADLMLGGEGNPVDEELNEIHISAVQEAMNQMMGSSATSMSTMF 160

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +     SP   D  D  +    ++    E + T++  + I + + S+ + ++P     K 
Sbjct: 161 NRFVNISPPGIDILDPMHGDGVSSLPDEETLITVSFRLLIGDLIDSTLMQLLPVNFAKKM 220

Query: 210 TLISLSSQNKSENQSEDLID 229
             I ++     E        
Sbjct: 221 VSILMNGGEDEEQPQASAQQ 240


>gi|206563882|ref|YP_002234645.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092661|gb|AAK50139.1| BcscQ [Burkholderia cenocepacia]
 gi|198039922|emb|CAR55899.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 366

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 75/295 (25%), Gaps = 27/295 (9%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P+      G   D      I ++L       L  + +      V +            
Sbjct: 83  IDPVAETEWLGDAADPAVPAVIRAALLADLCAPLAAVLQAATRQRVALLPPP-------D 135

Query: 73  IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
              ++       +  L      W  +  +       + +      A+          + +
Sbjct: 136 GAPAWDAAPAALRFELRRADAAWRCHGALLFDAPDALAV----FFATAPAALADARATYA 191

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
           ++   L                         +E +   +       RL       I    
Sbjct: 192 SLPVPLVFEIGRTELTTAELA-DVVGGDIIAIERWQAHEQNLLCVARLPAAPAWEITGRP 250

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
           +   +    +  +P   L  T    +  + + +            R    L V++   + 
Sbjct: 251 SGNRLTVERIREMP---LEPTRTDSAPPTTHDAPPGDAP------RSLDGLAVDLRFELP 301

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
                L ++  L+ G VI            L ANG  I +  L  VG+   +R+ 
Sbjct: 302 PTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 356


>gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51]
 gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 421

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
             T +  +     +                + + +   +   K T+K+++ L  G VI  
Sbjct: 312 PPTPVQPAQFVPLKPGDPLHGQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIEL 371

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                    +  NGK +  CE+  + + + IRITD +   ++  K  
Sbjct: 372 DRLAGEPVDMIVNGKLVAKCEVVVINETFGIRITDIVQPSERMTKAI 418



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 7/217 (3%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
            P        +  D +        +  +          + +   V+I+           I
Sbjct: 22  DPPAQKEPAVEFSDMER--DAIGEIANISMGTAATTLSQLLGKKVEITTPKVDMASAEQI 79

Query: 74  IHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
              +    V            +  +  S      +++ ++G + E  P   +    +   
Sbjct: 80  RKDYPIPSVIVDVRYKAGIEGSNLLILSQRDGAVIVDLMMGGTGENPPTELSELGISGIS 139

Query: 133 KLAKRTIAQISAVLNQCISTTQESSP---NLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +   + +   +  ++   ++  + +P    L D    D         S+E +  I+  M 
Sbjct: 140 EAMNQMMGSAATSMSTMFNSVVDITPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRMV 199

Query: 190 IENVASSFVL-IIPQETLLKTTLISLSSQNKSENQSE 225
           +E+V  S ++ +IP           L +   S ++ E
Sbjct: 200 VEDVIDSILVQVIPIHVAKGMVGKLLGTMGGSGSKPE 236


>gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
 gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
          Length = 408

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 82/307 (26%), Gaps = 36/307 (11%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHS 76
           A L G++      E ++  +G                  VDIS  S              
Sbjct: 128 ADLLGEIQLSAVQEAMNQMMG-----SAATSMSTIFSKRVDISPPSIDFLDVQQGEGTDR 182

Query: 77  FKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLL--GASHETIPQLYNRS-LS 128
             ++ +  + S          S+            L+E L+  GA  E      ++    
Sbjct: 183 IPDDDMLVKVSFRLKIGDLIDSSIMQVVPLEFAKRLVEELMNPGAQAENPAADLSKPDPV 242

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             ++    +  A+    +        + +                               
Sbjct: 243 QAQEPAFHQPPAEPVPDMAAAPPGYGQGTAQYSGMETQTQRPAAQAAPQ----------- 291

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
                     L           +      N    Q ++           + + +   +  
Sbjct: 292 ---------HLGAHYPGGQPPQVQPAVFSNFEPQQLQESETKNLNMLLDIPLQVTVELGR 342

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            K ++KD++ L  G +I           +  N + I   E+  + +N+ +R+TD I+   
Sbjct: 343 TKRSVKDILELSAGSIIELDKLAGEPVDILVNSRLIAKGEVVVIEENFGVRVTDIISQSD 402

Query: 309 KSLKNFL 315
           + +KN  
Sbjct: 403 R-IKNLR 408



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 68/200 (34%), Gaps = 2/200 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+  +        +   F         +    
Sbjct: 39  QDALGEIGNISFGSSATALSTLLNQKVEITTPTVSVILKRKLQEEFPHPYVAIQVSYTEG 98

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +S +  +    +    + + +LG        L      +  ++   + +   +  ++   
Sbjct: 99  FSGSNLLVIKQSDAAIIADLMLGGDGLNPADLLGEIQLSAVQEAMNQMMGSAATSMSTIF 158

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           S   + SP   DF D+   +       ++ +  ++  + I + + SS + ++P E   + 
Sbjct: 159 SKRVDISPPSIDFLDVQQGEGTDRIPDDDMLVKVSFRLKIGDLIDSSIMQVVPLEFAKRL 218

Query: 210 TLISLSSQNKSENQSEDLID 229
               ++   ++EN + DL  
Sbjct: 219 VEELMNPGAQAENPAADLSK 238


>gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427]
 gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium lentocellum DSM 5427]
          Length = 403

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/366 (11%), Positives = 105/366 (28%), Gaps = 77/366 (21%)

Query: 22  TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KEN 80
           +G +            +G +            ++  V I+    ++  +   I++   + 
Sbjct: 38  SGTVTLSPEETDALGEIGNICMGTAATTLFTLLNHKVLITTPKVEALTWEQFINTITDDL 97

Query: 81  FVFSQASLSSWSSNFFIGC---SNNLVITLL-------------ENLLGASHETIPQLYN 124
              S      +  +  +        ++  L+             +  L A  E++ Q+  
Sbjct: 98  TAVSVDYTEGFRGSNLMILKDHDVKIIADLMMGGTGAYAEGPVTDLHLSAIAESMNQMIG 157

Query: 125 RSLSTVEKKLAKRT------IAQISAVLNQCIST---TQESSPNLEDFYDIDYLKKNTNR 175
            S +++ +   K+         ++ A L           + S  L+   +I   +     
Sbjct: 158 SSSTSMAQIFNKKIDISPPQALKMEANLEDIFGPKGDIVKISFRLQIEENIIDSELMQVL 217

Query: 176 LSNEFVTTINMNMTIE-----------------NVASSF-------VLIIPQETLLKTTL 211
                   I   +  E                  V+SS         ++ P+  L     
Sbjct: 218 PIQFAKELIAGLLNQEQIATEEVAAPQPIENKSEVSSSVVQTATQPTMVQPESKLPPIME 277

Query: 212 ISLSSQNKS---------------------------ENQSEDLIDPFARKTYQLNVNIDT 244
               + + +                           +N+ +            +++ +  
Sbjct: 278 QPYMTNDPNYYGETYHKSVNNIRADVDVQTPQFQSFDNRPKVYPKENMDLLMDVSLEVSV 337

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +      +K+++    G +I           +  NGK + + E+  + +N+ IRITD I
Sbjct: 338 ELGRTSRKIKEILEFGPGSIIELNRLVGEPVDVLVNGKFVATGEVVVIDENFGIRITDII 397

Query: 305 NFDQKS 310
           N + + 
Sbjct: 398 NPEDRI 403


>gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetivibrio cellulolyticus CD2]
 gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetivibrio cellulolyticus CD2]
          Length = 410

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 78/288 (27%), Gaps = 26/288 (9%)

Query: 35  SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN------FVFSQ 85
            S++G    + +           D  VDIS        F +      +         F  
Sbjct: 137 LSAIGEAMNQMIGSAATSMSSMFDKRVDISPPRAFCMTFDNQQEDVFQPEDRLVKIAFKM 196

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                  S            +L++NL+ A+ E +    N + S    K            
Sbjct: 197 VIGELVDSEIMQLIPLKFAKSLVDNLINANSEAVAPPQNNNSSASSVK------------ 244

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ-- 203
            N          P  +        ++   +   +           + +   F    PQ  
Sbjct: 245 -NTPQVQPPPQQPQQQYTEQYPQQQQYPQQQYQQQYPPQQYPPMQQGMGQPFYGQAPQEQ 303

Query: 204 -ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
                   +     Q   +                + + +   +      +KD++    G
Sbjct: 304 GRFREPINVQPAQFQAFDDGMISFERKNI-GLIMDVPLQVTVELGRTNRLIKDILEFGPG 362

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +I           +  NGK I   E+  + +++ +RITD I+  ++ 
Sbjct: 363 SIIELDKLAGEPVDILVNGKVIAKGEVVVIDESFGVRITDIIHPSKRL 410


>gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684]
 gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684]
          Length = 301

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 75/289 (25%), Gaps = 21/289 (7%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDV---DISYTSCQSGKFSHIIHSFKENFV-FSQASL 88
                LG    + + K+        V   D++  +  +  F     + +   V  S A +
Sbjct: 5   DALMRLGASTAEAIAKVLDSLCPDQVERGDVAVLNPDTNPF----ATLEAPAVAVSVAYV 60

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              +       +      +  +++G   +  P+     LS +E         Q+ A    
Sbjct: 61  DGVTGANVFVMTAKGARRIAASMMG---QPPPEDDASELSVLELSAVAEAANQMMAAAAA 117

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV---TTINMNMTIEN------VASSFVL 199
            I         +       +   +    + E           +  E       V ++FV+
Sbjct: 118 AIGVVLGQDVEIAPPETRLFNSASEAIDAYEMAPHGARATFRVCDEPCRLVQLVPNAFVV 177

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
            + +              +                   + V +   +   +  L     +
Sbjct: 178 RMTRALDEMGVEHVSGGASDGGEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDM 237

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELG-RVGKNYTIRITDRINFD 307
             G V+    +      L  NG    S  L       + +R+ +    D
Sbjct: 238 PAGSVLELDRKADDPVDLYVNGLRFASGTLVLTDDGEWALRLAEVAGRD 286


>gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
 gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI]
          Length = 422

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/361 (7%), Positives = 84/361 (23%), Gaps = 82/361 (22%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS--FKENFVFSQAS 87
             +     +G +            ++  V I+            + S       ++ + +
Sbjct: 59  EEKDALGEIGNICMGSAATTLSVLLNQTVSITSPRVTITTMEEFVKSFTIPHMTIYVRFT 118

Query: 88  LSSWSSNFFIGCSNNLVITL---------------------------LENLLGASHETIP 120
               S    +         +                           +  ++G +  ++ 
Sbjct: 119 -EGLSGYNLLFMKLRDAAVMADLMMGGDGSQASEDLTEISISAASEAMNQMIGTASTSMA 177

Query: 121 QLYNRS--LSTVEKKLAKRTIA-QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
            +  R   +S  E ++  +    ++  ++ +           + +  D   ++      +
Sbjct: 178 AMIGRPVNISPPETRIVNKDNEARVFDLVQEEHIVVVWFKMTIGNILDTQIMQVMGINTA 237

Query: 178 NEFV--TTINMNMTIE------------------NVASSFVLI---IPQETLLKTTLISL 214
            E          + +                     A                  +    
Sbjct: 238 KEEANFILNRF-LQVGSEEEPSLPEDYPSARPDAGEAGRIDEAGEDFAASLFEDFSRPEP 296

Query: 215 SSQNKSENQSEDLIDPFA-------------------------RKTYQLNVNIDTRINLK 249
             + +                                           + + +   +   
Sbjct: 297 GKEAERLQGPPAWEQEIRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPLKVTVILGRT 356

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +  +KD++ L  G V+   +       +  NG  +   E+  V +N+ +RIT  I  +++
Sbjct: 357 RWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVVVNENFGVRITSIIGPEER 416

Query: 310 S 310
            
Sbjct: 417 L 417


>gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908]
 gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 285

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 16/225 (7%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +LV  L + +LG    +  ++ N  L   ++ +A      I+  L        + +    
Sbjct: 67  DLVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTT 124

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI-------IPQETLLKTTLISL 214
           +      L K  +          +  M     +   +LI         +    +    + 
Sbjct: 125 NAEIAKDLPKKEDYA---KAVVFSFKMEAIKESQIVLLITSAFEGQFEKTHKEEKEETTK 181

Query: 215 SSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           S+  +++     L +   R       + +N+  RI  KK  LKDVV++ IG V+      
Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 242 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 285


>gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99]
 gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
          Length = 285

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 20/227 (8%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI----------- 150
           +LV  L + +LG    +  ++ N  L   ++ +A      I+  L               
Sbjct: 67  DLVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQELLPKLNFTTTN 125

Query: 151 -STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
               +E     +    + +  K      ++ V  I            F     +E    T
Sbjct: 126 AEIAKELPKKEDYAKAMVFSFKMEAIKESQIVLLIT-----SAFEGQFEKTHKEEKEETT 180

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
              +  ++    +     I   +     + +N+  RI  KK  LKDVV++ IG V+    
Sbjct: 181 KSATEETKTHDASLENIEIRNISM-LLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQ 239

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                  +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 240 LVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 285


>gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 393

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 84/311 (27%), Gaps = 43/311 (13%)

Query: 14  HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A L     G   D    E   S++     + +           +  VDIS  +  
Sbjct: 108 DAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIFNKRVDISPPTLH 167

Query: 67  SGKFSHI--IHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119
               +    +    +   F + S          SN       +    L+ +LLG+S E  
Sbjct: 168 LLDLTEGKGLEYLPDEDFFIKVSFRLKIGALVDSNIMQLLPIDFAKELVTHLLGSSAEAA 227

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
             L                                   P+       +  +         
Sbjct: 228 GTLEKEE----------------------------NIDPSSAGAVPREEPQPAPAYAHAS 259

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
                +      N          +    +    +  ++      +           + + 
Sbjct: 260 DGVFSSAASRFTNETVGGRSKEEESVAERHIQAADFAEFDDPPLAATEARNL-ELLFDVP 318

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   K ++++++ L  G +I           +  N K I   E+  + +N+ +R
Sbjct: 319 LQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENFGVR 378

Query: 300 ITDRINFDQKS 310
           ITD ++ + + 
Sbjct: 379 ITDIVSQNDRL 389



 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 56/194 (28%), Gaps = 2/194 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+  S    +   +   F              
Sbjct: 36  QDAIGEIGNISFGSSATALSTLLNQKVEITTPSVSVVERKRVADEFPRPYVAIQVNYTEG 95

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + +LG    T          +  ++   + +   +  ++   
Sbjct: 96  FLGTNLLVIEQQDAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIF 155

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +   + SP      D+   K        +F   ++  + I   V S+ + ++P +   + 
Sbjct: 156 NKRVDISPPTLHLLDLTEGKGLEYLPDEDFFIKVSFRLKIGALVDSNIMQLLPIDFAKEL 215

Query: 210 TLISLSSQNKSENQ 223
               L S  ++   
Sbjct: 216 VTHLLGSSAEAAGT 229


>gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
 gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
          Length = 288

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 92/284 (32%), Gaps = 24/284 (8%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106
              +  +     +      S             +     S      S+  +     LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEVSNSEEAWESLISAPYARVMVSAIEKEESSIELVAPVVLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   +  
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125

Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK----------TTLISLS 215
              +        E     I  +  +E +  S ++++      +                S
Sbjct: 126 TNAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEKTHQEEKEEETKKS 185

Query: 216 SQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +  + +     L +   R       + +N+  RI  KK  LKDVV++ IG V+       
Sbjct: 186 ATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 245

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
               +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 246 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 288


>gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
           16841]
 gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
           16841]
          Length = 379

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/351 (9%), Positives = 92/351 (26%), Gaps = 75/351 (21%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASL 88
             +     +G +            ++  VDIS        +S I  ++++  VF   A  
Sbjct: 29  AEKDAIGEIGNISMGTAATTLFSLVNRKVDISTPVVSFATWSDICDAYEKPCVFIRIAYT 88

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGA------------SHETIPQLYNRSLSTVEKKLAK 136
                +  +    + V  + + ++G                 I +  N+ + +    L+ 
Sbjct: 89  VGLDGSNILVLKEHDVKVITDLMMGGDGTNTDGELGELHLSAISEAMNQMMGSAATSLSS 148

Query: 137 RTIAQI-----SAVLNQCISTTQE---------------SSPNLEDFYDIDYLKKNTNRL 176
                I      A L        E                   + D  D + ++      
Sbjct: 149 MLNKTIDISPPVADLVDLHDNIDEGSIADFLSGSFVKISFKMEIGDLVDSEIMQLYPVSF 208

Query: 177 SNEFVTTIN----------------------------MNMTIENVASSFVLIIPQETL-- 206
           + E   +I                             M   +         ++ Q  +  
Sbjct: 209 AKEMCASITKNMEADTNSTSNEAEKAVSAQPAAPQPQMEQPMGGQQVMGQPMMGQPMMGQ 268

Query: 207 ------------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
                           +     Q  + + ++            + + +   +     ++ 
Sbjct: 269 PMMAPNMNQMYAQPVNVQPAQFQAFNPSIAQVAGAENIGLIMDVPLEVTVELGRTTKSIH 328

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +++    G +I           +  NGK +   E+  + +++ +RIT+ + 
Sbjct: 329 EILDFAPGTIIELNRIAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVK 379


>gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1]
 gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1]
          Length = 287

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 21/282 (7%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106
              +  +     +      S             +     S      S+  +    +LV  
Sbjct: 14  STLEGLVGKASSVGLEKEVSNSEEAWESLISAPYARVMVSAIEKEESSIELLAPVDLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L      
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLNFTTTN 127

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL------KTTLISLSSQNKS 220
             + K   +  +     +  +  +E +  S ++++                   ++Q+ +
Sbjct: 128 AEIAKELPKKEDYTKAMV-FSFKMEAIKESQIILLTTAAFECQFEKTHKEEKEETTQSAA 186

Query: 221 ENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           E            +         + +N+  RI  KK  LKDVV++ IG V+         
Sbjct: 187 EEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDP 246

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
             +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 247 LEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 417

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 39/105 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
             T +  +     +                + + +   +   K T+K+++ L  G VI  
Sbjct: 308 PPTPVQPAQFVPLKPGDPLHGQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIEL 367

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                    +  NGK I  CE+  + + + IRITD +   ++  K
Sbjct: 368 DRLAGEPVDMIVNGKLIAKCEVVVINETFGIRITDIVQPGERMTK 412



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 67/215 (31%), Gaps = 9/215 (4%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
            P        +  D +        +  +          + +   V+I+           I
Sbjct: 22  DPPAQKEPAVEFSDMER--DAIGEIANISMGTAATTLSQLLGKKVEITTPKVDMASAEQI 79

Query: 74  IHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131
              +    V            +  +  S      +++ ++G + E    +L   S+S + 
Sbjct: 80  RKDYPIPSVIVDVRYKAGIEGSNLLILSQRDGAVIVDLMMGGTGENPPTELSELSISGIS 139

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSP---NLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
           +    + +   +  ++   ++  + +P    L D    D         S+E +  I+  M
Sbjct: 140 EA-MNQMMGSAATSMSTMFNSVVDITPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRM 198

Query: 189 TIENVASSFVL-IIPQETLLKTTLISLSSQNKSEN 222
            +E+V  S ++ +IP           L +   S +
Sbjct: 199 VVEDVIDSILVQVIPIHVAKGMVGKLLGTMGGSGS 233


>gi|255589689|ref|XP_002535050.1| conserved hypothetical protein [Ricinus communis]
 gi|223524126|gb|EEF27332.1| conserved hypothetical protein [Ricinus communis]
          Length = 104

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 205 TLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
            +        +  Q+  ++  E  +          +V ++  I  K   L+D++ L+ G 
Sbjct: 1   MIEPIRETLDAGMQSDVDDIDERWVRSLREDVMSASVVVNGTIAEKDVALRDIIDLEPGD 60

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           VIP         +L+ANG  I    LG+   N  ++I ++ + 
Sbjct: 61  VIPVDL--GEKIVLTANGVPIMYARLGQSRGNLALQILEKFDR 101


>gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804]
 gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii]
          Length = 181

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 97  DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 156

Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
            + Y IR+TD I   ++ +    ++R
Sbjct: 157 EEKYGIRLTDIITPSER-INRLNNRR 181


>gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. G11MC16]
 gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. G11MC16]
          Length = 394

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 84/311 (27%), Gaps = 43/311 (13%)

Query: 14  HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A L     G   D    E   S++     + +           +  VDIS  +  
Sbjct: 109 DAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIFNKRVDISPPTLH 168

Query: 67  SGKFSHI--IHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119
               +    +    +   F + S          SN       +    L+ +LLG+S E  
Sbjct: 169 LLDLTEGKGLEYLPDEDFFIKVSFRLKIGALIDSNIMQLLPIDFAKELVTHLLGSSAEAA 228

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
             L                                   P+       +  +         
Sbjct: 229 GTLEKEE----------------------------NIDPSSAGAVPREEPQPAPAYAHAS 260

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
                +      N          +    +    +  ++      +           + + 
Sbjct: 261 DGVFSSAASRFTNETVGGRSKEEESVAERHIQAADFAEFDDPPLAATEARNL-ELLFDVP 319

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   K ++++++ L  G +I           +  N K I   E+  + +N+ +R
Sbjct: 320 LQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENFGVR 379

Query: 300 ITDRINFDQKS 310
           ITD ++ + + 
Sbjct: 380 ITDIVSQNDRL 390



 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/194 (9%), Positives = 56/194 (28%), Gaps = 2/194 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+  S    +   +   F              
Sbjct: 37  QDAIGEIGNISFGSSATALSTLLNQKVEITTPSVSVVERKRVADEFPRPYVAIQVNYTEG 96

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + +LG    T          +  ++   + +   +  ++   
Sbjct: 97  FLGTNLLVIEQQDAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIF 156

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +   + SP      D+   K        +F   ++  + I   + S+ + ++P +   + 
Sbjct: 157 NKRVDISPPTLHLLDLTEGKGLEYLPDEDFFIKVSFRLKIGALIDSNIMQLLPIDFAKEL 216

Query: 210 TLISLSSQNKSENQ 223
               L S  ++   
Sbjct: 217 VTHLLGSSAEAAGT 230


>gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103]
 gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103]
 gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355]
          Length = 137

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 NDKYGVRITDIITPSERM 132


>gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10]
 gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulolyticum H10]
          Length = 402

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 3/156 (1%)

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
           + +P+ ++                     +  +M        +    PQ       +   
Sbjct: 250 QMAPSFDNQNSYIEPPLQPVMQPQIPQPMMQQSMPNFGYDGVYQ--EPQRQRAPVNVQPA 307

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
             Q   +  S       +     L + +   +   +  +KD++    G VI         
Sbjct: 308 QFQAFDDGLSVTEKKNIS-LIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEP 366

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  NGK I   E+  + +++ +RITD I+  ++ 
Sbjct: 367 VDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKRL 402


>gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70]
 gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. WCH70]
          Length = 401

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 100/311 (32%), Gaps = 37/311 (11%)

Query: 14  HPILLAR-LTGKLGDKKTI---EKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A  + G  G   T    E   S++     + +              VDIS  +  
Sbjct: 110 DAAIIADLMLGGDGKNTTDSLGEIQLSAVQEAMNQMMGSAATSMSTIFGKRVDISPPTVH 169

Query: 67  S--GKFSHIIHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119
               K    I    +  VF + S          SN       +    L++ LL       
Sbjct: 170 LLDVKEGEGIEYLPDEDVFIKVSFRLKIGNLIDSNIMQLLPVDFAKELVQQLL------H 223

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                 S S V++   +  + + +       + T ++SP+ E     +Y+   T     +
Sbjct: 224 STSETDSSSGVKEAGKETVMQEAALSKQSVTAETIDTSPSYELPKTENYVTHETAPSHRD 283

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
                       N   ++          +       ++ +    ++  +   +     + 
Sbjct: 284 T-----------NHFGTY-----ARAGERQIQSVDFAEFEPSPPADAEVKNLS-LLLDVP 326

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   K +++++++L  G +I           +  N K I   E+  + +N+ +R
Sbjct: 327 LQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVR 386

Query: 300 ITDRINFDQKS 310
           +TD I+   + 
Sbjct: 387 VTDIISQSDRL 397



 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/220 (7%), Positives = 63/220 (28%), Gaps = 2/220 (0%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+  S    +  ++   F              
Sbjct: 38  QDALGEIGNISFGSSATTLSMLLNQKVEITTPSVSVIERKNVADEFPLPYVAIQVNYTDG 97

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 +         + + +LG   +           +  ++   + +   +  ++   
Sbjct: 98  LLGTNLLVIKQEDAAIIADLMLGGDGKNTTDSLGEIQLSAVQEAMNQMMGSAATSMSTIF 157

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
               + SP      D+   +        +    ++  + I N + S+ + ++P +   + 
Sbjct: 158 GKRVDISPPTVHLLDVKEGEGIEYLPDEDVFIKVSFRLKIGNLIDSNIMQLLPVDFAKEL 217

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
               L S +++++ S            +  ++  +     
Sbjct: 218 VQQLLHSTSETDSSSGVKEAGKETVMQEAALSKQSVTAET 257


>gi|119469992|ref|ZP_01612797.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
 gi|119446702|gb|EAW27975.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
          Length = 133

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 6/113 (5%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
            G+    +T         R+                +   + + +       M    ++S
Sbjct: 27  DGEDGGGSTLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114
               Q  KF   +H+       +            I     LV  L++N LG 
Sbjct: 81  INGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFLGG 133


>gi|213418731|ref|ZP_03351797.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 102

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
             S ++ ++  D   R+     + +          L  ++ LK G V+P         I 
Sbjct: 5   ENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIA 62

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306
             +G  + + + G V   Y +R+   IN 
Sbjct: 63  HVDGVPVLTSQYGTVNGQYALRVEHLINP 91


>gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB]
 gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB]
          Length = 135

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 53  DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 112

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 113 NDKYGVRITDIITPSERM 130


>gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
           27750]
 gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
           27750]
          Length = 437

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/289 (9%), Positives = 76/289 (26%), Gaps = 19/289 (6%)

Query: 35  SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ-SGKFSHIIHSFKE----NFVFSQA 86
            S++G    + +           +  +DIS         ++ +           FV    
Sbjct: 150 LSAIGEAMNQMMGSAATSMSSMFNRKIDISPPVANLVETYNELDEGMPAFLNKPFVKVAF 209

Query: 87  SL---SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
            +       S             LL     +S ++             +   ++   Q  
Sbjct: 210 KMQIGDLIDSEIMQLYPKEFAQELLNMFTPSSDDSSNSQPQPEPQPASQAPVQQPAPQAQ 269

Query: 144 AVLNQCISTTQESSPNLEDFYD----IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
            V            P++             ++         +  +     +  +      
Sbjct: 270 PVQQPAPQAQSVQQPDMNMQQAGMMGQAVPQQGMAMQQGMPMQGMPYGYGMP-MQGMMGQ 328

Query: 200 IIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +P           +   + Q  + + +             + + +   +     ++KD+
Sbjct: 329 PMPMQGYAQPQDVNVAPAAFQPFATDVNPISQKENIELIKDVPLEVTVELGRTTKSIKDI 388

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +    G ++           +  NGK +   E+  + +++ +RIT+ I 
Sbjct: 389 LEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEESFGVRITEIIK 437



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 64/200 (32%), Gaps = 6/200 (3%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SS 90
           +     +  +            +   V+I+    +   +  +   +    V  Q S    
Sbjct: 52  KDAVGEISNISMGTAATTLSSLLSQKVNITTPKVEVATWDDLSREYDRPCVMMQISYKEG 111

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS--LSTVEKKLAKRTIAQISAVLNQ 148
            + N  +    N V  + + ++G +    P        LS + +    + +   +  ++ 
Sbjct: 112 LAGNNVLILKENDVKIITDLMMGGTGTANPDEPLSELHLSAIGEA-MNQMMGSAATSMSS 170

Query: 149 CISTTQESSPNLED-FYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL 206
             +   + SP + +     + L +      N+    +   M I + + S  + + P+E  
Sbjct: 171 MFNRKIDISPPVANLVETYNELDEGMPAFLNKPFVKVAFKMQIGDLIDSEIMQLYPKEFA 230

Query: 207 LKTTLISLSSQNKSENQSED 226
            +   +   S + S N    
Sbjct: 231 QELLNMFTPSSDDSSNSQPQ 250


>gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
 gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
          Length = 175

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K ++ L  G VI           +  NG  I   E+  V
Sbjct: 93  DLIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVV 152

Query: 293 GKNYTIRITDRINFDQKSLK 312
              Y IRIT+ I   ++  K
Sbjct: 153 DDKYGIRITEIITPSERVKK 172


>gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
 gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
          Length = 135

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 53  DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 112

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 113 NDKYGVRITDIITPSERM 130


>gi|254255041|ref|ZP_04948358.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
 gi|124899686|gb|EAY71529.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
          Length = 292

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 81/288 (28%), Gaps = 32/288 (11%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
            L P  L R    LGD         +L      +L   +  +    + +S ++    +  
Sbjct: 29  ALDPCTLGRPFHLLGDFHA------ALRRRIGTYLQDSYNHRCGARLIVSDSAIVPHRSG 82

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
             + ++                   I     L++ LL    G   E +      + +  E
Sbjct: 83  EALAAWHG--------FGDDQGAIGIRIERGLLLLLLAYHYGDRAERLEADSLPAETRTE 134

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           ++            +    +   E  P LE        ++         + ++ +     
Sbjct: 135 QRF----------AMQTRRALLGELLPLLELDAGALTPQQFDGIGPGSQILSVIVRDESL 184

Query: 192 NVASSFVLIIPQETLLKTTLI-SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
           +V       +    L +                 +D       +     V ++  I  ++
Sbjct: 185 DVTGRIEFALDDAWLARLFATCVPRRVRDRAPSDDD--GALGARI---PVALNATIVTRE 239

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
             L DV+ L  G ++P        A +  +G +++   +   G    +
Sbjct: 240 LLLGDVLDLNRGSILPIRLP--DAADVDVDGLKVFRAAVVEHGGKICL 285


>gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermincola sp. JR]
 gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermincola potens JR]
          Length = 412

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + I   +   K T+++++ L  G V+           L  NGK +   E+  +
Sbjct: 331 DLIMDVPLQITVELGKAKKTIREILNLAPGSVVELDKLAGEPVDLMVNGKLLAKGEVVVI 390

Query: 293 GKNYTIRITDRINFDQKSLK 312
            +N+ IRITD ++  ++   
Sbjct: 391 DENFGIRITDIVSPMERVTN 410



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 68/207 (32%), Gaps = 5/207 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKT--IEKISSSLGYLYKKFLPKIFKEKMDLDV 58
           +R  +  +  +   P       G  GD+ T   +     +  +            +   V
Sbjct: 15  LRSDAFQEAINASEPDTHQAAAGPTGDELTNMEKDAVGEVANMVMGSAATALSTLLGKKV 74

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           +I+    +    + + H +   ++      ++    +  +   +     +++ ++     
Sbjct: 75  EITTPVVEITTPARLRHEYPLPYLLVNVEYVTGIKGSNVLIIKDGDAGVIVDLMMMGDGT 134

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK-NTNRL 176
           + P        +   +   + +   S   +  I    E SP   D  ++   +       
Sbjct: 135 SPPAQLEEMHLSAIAEAMNQMMGSASTAFSTIIKERVEISPPTVDLINLATDELKGRLAN 194

Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIP 202
            +E +  ++  MTIE+ V S  + ++P
Sbjct: 195 PDEPIVKVSFKMTIEDLVNSEMMQLMP 221


>gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464]
          Length = 290

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 25/230 (10%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           LV  L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L  
Sbjct: 70  LVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN- 122

Query: 163 FYDIDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLIS-------- 213
            +     +        E     +  +  +E +  S ++++      +             
Sbjct: 123 -FTTINAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAAFERQFEKMHQEEKEEK 181

Query: 214 ----LSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                S+  + +     L +   R       + +N+  RI  KK  LKDVV++ IG V+ 
Sbjct: 182 EETTKSTAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVE 241

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                     +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 242 LDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290


>gi|115358963|ref|YP_776101.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria AMMD]
 gi|115284251|gb|ABI89767.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria AMMD]
          Length = 381

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 78/291 (26%), Gaps = 19/291 (6%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P+      G   D      I ++L       L    +      V++      S     
Sbjct: 98  IDPLAENEWLGDAADPAVPAVIRAALLADLAAPLAAALQAATRQRVEL-LPPPASVPAW- 155

Query: 73  IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
              +      F        W  +  +       + +      A+          + + + 
Sbjct: 156 --RTAPAALRFELRRADGAWRCHGALLFDAPDALAV----FFATPVATRADTRAAYAGLP 209

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             L           + +           +E +   +       R+       I    +  
Sbjct: 210 VPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNLLCVARVPAAPAWEITGRPSGN 268

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            +    +  +P   L  T   + S+     +  +       R    L V++   +     
Sbjct: 269 RLTVERIREMP---LEPTRTDTPSATTHDASADDA-----PRSLDSLAVDLRFELPPTSI 320

Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
            L ++ TL+ G VI            L ANG  I + +L  VG+   +R+ 
Sbjct: 321 PLGELGTLQPGAVIELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 371


>gi|33592494|ref|NP_880138.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
 gi|33572140|emb|CAE41683.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
 gi|332381912|gb|AEE66759.1| flagellar motor switch protein FliN [Bordetella pertussis CS]
          Length = 166

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 82  DLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 141

Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
              Y IR+TD I   ++ +     +R
Sbjct: 142 DDKYGIRLTDIITPSER-INRLNSRR 166


>gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
 gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
          Length = 136

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 54  DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 113

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 114 NDKYGVRITDIITPSERM 131


>gi|33601557|ref|NP_889117.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
 gi|33575993|emb|CAE33073.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
          Length = 172

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 88  DLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 147

Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
              Y IR+TD I   ++ +     +R
Sbjct: 148 DDKYGIRLTDIITPSER-INRLNSRR 172


>gi|260432994|ref|ZP_05786965.1| surface presentation of antigens protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416822|gb|EEX10081.1| surface presentation of antigens protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 331

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 82/267 (30%), Gaps = 16/267 (5%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L +   E+  L   +   + QSG+    +    +         +       +     LV 
Sbjct: 3   LARAAVERFRLSASV-IGAKQSGRRQEAVTEGLDESRLFLLFAADEQRVACLAMDPGLVA 61

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN--LEDF 163
            +++        +      R  +  +  +    + ++ A   Q +   ++ +     E  
Sbjct: 62  AVIQKQTIGEV-SPDPPPVRKFTDTDAAIVAPLVEEMLARGAQLVEEPEDKARLSGYEFL 120

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIEN--VASSFVLIIPQETLLKTTLISLSSQNKSE 221
                L+  +  L  +     ++ + +E         L++P ++            +  E
Sbjct: 121 SRASGLRAVSLALVQDVYDVFDLTVELEGGVRQGVVSLLLPPQSAKP---------DSHE 171

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-AN 280
            Q  +     A  +  L   +   I      L ++  L  G+V+P  +       +   +
Sbjct: 172 EQGAEGGAKLADASGVLRAELTAVIAQMHLPLSELSALTEGKVLPLSNARLDRIAMQAID 231

Query: 281 GKEIYSCELGRVGKNYTIRITDRINFD 307
              + +  LG+ G    +R+ +     
Sbjct: 232 RTRVATGRLGQCGGMRAVRLNEAHASK 258


>gi|172063755|ref|YP_001811406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MC40-6]
 gi|171996272|gb|ACB67190.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MC40-6]
          Length = 381

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 77/291 (26%), Gaps = 19/291 (6%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P+      G   D      I ++L       L    +      V++      S     
Sbjct: 98  IDPLAEHEWLGDAADPAVPAVIRAALLADLAAPLTAALQAATRQRVEL-LPPPASVPAW- 155

Query: 73  IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
              +      F        W  +  +       + +      A+          + + + 
Sbjct: 156 --RTAPAALRFELRRADGAWRCHGALLFDAPDALAV----FFATPAATRADTRAAYAGLP 209

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             L           + +           +E +   +       R+       I    +  
Sbjct: 210 VPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNLLCVARVPAAPAWEITGRPSGN 268

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            +    +  +P   L  T   + S      +  +       R    L V++   +     
Sbjct: 269 RLTVERIREMP---LEPTRTDTPSVTTHDASADDA-----PRSLDSLAVDLRFELPPTSI 320

Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
            L ++ TL+ G VI            L ANG  I + +L  VG+   +R+ 
Sbjct: 321 PLGELGTLQPGAVIELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 371


>gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 398

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 82/288 (28%), Gaps = 40/288 (13%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH--SFKENFVFSQAS 87
            I  +  ++             +  +  VDIS    +           +F ++ V  Q S
Sbjct: 141 QISAVQEAMNQ-MMGSASTSMSQIFNKRVDISPPDVEQLNLKEDPDKVTFPDDDVMLQIS 199

Query: 88  LSSWSSN-----FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
                            S      +++ LL  + E I  +  +  +   + + +    Q 
Sbjct: 200 FDLKVGTLIDSKIMQLVSVEFAKDMVDQLL--NPEPIEDITEKDANVNTQPVEETVTQQA 257

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
                                   +  +      +     +        +  S     +P
Sbjct: 258 F-------------------PQTNEQPQ----MDATNQHQSARQEPQFVSNGSR----LP 290

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
             +     +   +  N    Q  +           + + +   +   K ++KD++ L  G
Sbjct: 291 DRSAE---VQPAAFSNFETPQLGNNEAKNLDMLLDIPLEVTVELGRTKRSIKDILELTQG 347

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +I           +  N + I   E+  + +N+ +R+TD ++  ++ 
Sbjct: 348 SIIELDKLAGEPVDILVNQRLIAKGEVVVIDENFGVRVTDIVSKRERL 395



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 49/165 (29%), Gaps = 1/165 (0%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
               +     +G +            ++  VDI+       K S +   F +     S  
Sbjct: 41  SSIEQDALGEIGNISFGSSATALSTLLNQKVDITTPRVSIVKSSELDQQFPKPHIAVSVQ 100

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
               +     +   N     + + +LG       +       +  ++   + +   S  +
Sbjct: 101 YTVGFEGMNLLVIKNTDAAIIADLMLGNDGTNAGEELGEMQISAVQEAMNQMMGSASTSM 160

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +Q  +   + SP   +  ++           ++ +  I+ ++ + 
Sbjct: 161 SQIFNKRVDISPPDVEQLNLKEDPDKVTFPDDDVMLQISFDLKVG 205


>gi|254485678|ref|ZP_05098883.1| Surface presentation of antigens protein [Roseobacter sp. GAI101]
 gi|214042547|gb|EEB83185.1| Surface presentation of antigens protein [Roseobacter sp. GAI101]
          Length = 413

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 65/222 (29%), Gaps = 12/222 (5%)

Query: 95  FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
             +     LV  L++          P  + R ++  +  LA   I  +     + + T +
Sbjct: 83  GAVMIDPALVGGLIQQQTMGKVLDAPAGFVRPMTGTDAALAAPLIDALLERAAKLVETDE 142

Query: 155 E----SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           +    +            L   +       +  + ++M         VL +P        
Sbjct: 143 DRAVLTGYRFGAKSHNVRLLMLSLDAPEFHIIRMTVDMAQGARQGELVLCLPV----PPR 198

Query: 211 LISLSSQNKSENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
               +  +                +    QL   +   +     +++D   L +GQV+P 
Sbjct: 199 HAVAAPTSPDAGSAAADPVAPRTLSASVLQLKAELMVSLAQVTMSIRDAGGLHVGQVLPL 258

Query: 268 LHREKTCAILSA-NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                  A +   +G+ +    LG+      +R+  R+    
Sbjct: 259 GSVSFDAAQVRTKDGRILGVGSLGQSDGMRAMRLKHRVKTRD 300


>gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus
           silvestris StLB046]
          Length = 422

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 86/311 (27%), Gaps = 23/311 (7%)

Query: 14  HPILLAR-LTGKLG---DKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A  + G  G     +  E   S++     + +           +  VDIS  +  
Sbjct: 117 DAAIIADLMLGGDGINPRPELSEIQLSAVQEAMNQMMGSAATSMSTVFNQKVDISPPTID 176

Query: 67  S--GKFSHIIHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119
                 +    +   + +  + S          SN            ++++L+G + E +
Sbjct: 177 LLNISQNEGTDTIPTDELLVKISFRLRIGELIDSNLMQLLPLKFSKKIVKSLMGETDEPL 236

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                     V+    +           Q +       P  E        +    +   E
Sbjct: 237 TATTTVEPPPVQPTQQQPMQQAQQPTAQQSMFEQPVQQPMYEQP----VPQPVYQQPIYE 292

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
                      + V        P  T     +      +                   + 
Sbjct: 293 QPVQQQAYQQQQPVYEQ-----PAYTAPPANVQQAQFASFESANITQSEARNLNMLLDIP 347

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   K ++K+++ L  G +I           +  N + I   E+  + +N+ +R
Sbjct: 348 LQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVR 407

Query: 300 ITDRINFDQKS 310
           ITD ++   + 
Sbjct: 408 ITDILSQADRL 418



 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 61/190 (32%), Gaps = 2/190 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90
                 +G +            +   VDI+  S      + +   F   +V  Q    + 
Sbjct: 45  IDALGEVGNISFGSSATALSSLLGQKVDITTPSISMINRNRLEQEFPHPYVAVQVEYTTG 104

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            S    +    +    + + +LG          +    +  ++   + +   +  ++   
Sbjct: 105 LSGMNLLVIKQSDAAIIADLMLGGDGINPRPELSEIQLSAVQEAMNQMMGSAATSMSTVF 164

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +   + SP   D  +I   +      ++E +  I+  + I   + S+ + ++P +   K 
Sbjct: 165 NQKVDISPPTIDLLNISQNEGTDTIPTDELLVKISFRLRIGELIDSNLMQLLPLKFSKKI 224

Query: 210 TLISLSSQNK 219
               +   ++
Sbjct: 225 VKSLMGETDE 234


>gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium
           sticklandii DSM 519]
 gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium
           sticklandii]
          Length = 383

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 87/305 (28%), Gaps = 50/305 (16%)

Query: 21  LTGKLGDKKTIEKI----SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHI 73
           + G  G     E++     S++     + +        E +   +DI+        FS  
Sbjct: 111 MLGGDGKSDIPEELNEIHLSAISEAMNQMIGSSSTSLSEMLAKKIDITPPIVSKVNFSDS 170

Query: 74  -----IHSFKENFVFSQASL---SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
                + S  E  +     +       S        +    L+  +L    E   Q+   
Sbjct: 171 QLDPELLSADEPIICISFRMTVGDLIDSTIMQILPIDFARALVNRMLYGESEEEEQVTET 230

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
               V K++  +     S  +       ++   +  +       +KN       F +  +
Sbjct: 231 IEPQVAKQVEPQVQEDYSDDIEDDEYYEEDDDDSYYEPQKPPKKQKNVKVKPAAFASFDS 290

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
            N    NV  +  L                                      + + +   
Sbjct: 291 PNKRTGNVPENIDL-----------------------------------IKDVLLKVTVE 315

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +      + D++    G ++           +  NGK++   E+  + +NY IRITD I 
Sbjct: 316 LGRTTKPIDDILQFTPGSILELDRLVGEPLDIMVNGKKVAKGEVVVIDENYGIRITDIIK 375

Query: 306 FDQKS 310
            +++ 
Sbjct: 376 AEKRL 380


>gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83]
          Length = 137

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKSLK 312
              Y +RITD I   ++  +
Sbjct: 115 ADKYGVRITDIITPSERMHR 134


>gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74]
          Length = 134

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 52  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111

Query: 293 GKNYTIRITDRINFDQKSLK 312
              Y +RITD I   ++  +
Sbjct: 112 ADKYGVRITDIITPSERMHR 131


>gi|157959917|ref|YP_001499951.1| hypothetical protein Spea_0087 [Shewanella pealeana ATCC 700345]
 gi|157844917|gb|ABV85416.1| conserved hypothetical protein [Shewanella pealeana ATCC 700345]
          Length = 293

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 84/294 (28%), Gaps = 28/294 (9%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
              P+   L+     +      +++    +     + L  I ++       +S T     
Sbjct: 17  EVRPV--ALIKEKLARSRLLAQLDQCLRPIMDAVNELLHPIIRQGHHGLSQVSLT----T 70

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K S  +      +     +  +             +  L     GA   T  +   RS S
Sbjct: 71  KTSSYVPELHHAWFLLSYNRIALGWW---RIDKCTLDQLASGYYGAFASTP-KSPLRSPS 126

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E +L KR +      L           P  E   D   L+  +N    +      ++ 
Sbjct: 127 QSEFRLVKRLMIAAIKRL-----------PITEIDEDALELELLSNETPIKAPVCCELSF 175

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
              +     +  + +  L     +    Q         L +  A +  Q+ + +   +  
Sbjct: 176 PAAHSGPPMLFFMSEYLLGLMAELPSQYQ-----ADPALSEKLAHRLRQIPLRVLLELGH 230

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           + T+L  +  L +G V+P     +         + ++   +         ++T 
Sbjct: 231 QSTSLTSLQNLAVGDVLPMNLHSRCPVT--VGKRPLFYATVHTHEGQMVAKLTQ 282


>gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146]
 gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella
           ictaluri 93-146]
          Length = 137

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              + +RITD I   ++ 
Sbjct: 115 NDKFGVRITDIITPSERM 132


>gi|332702323|ref|ZP_08422411.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552472|gb|EGJ49516.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 181

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 37/93 (39%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +++++   +           + + +   +   K  + +++ L  G V+           +
Sbjct: 85  HEAKSPRPEQTKRDLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEI 144

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             NGK +   E   + + + IR+TD I+  ++ 
Sbjct: 145 YVNGKLVARGEAVVINEKFGIRLTDIISPIERV 177


>gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a]
          Length = 414

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 90/304 (29%), Gaps = 25/304 (8%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK---FSHIIHSFKENFV 82
            D+  I  +S  +             E + + +DIS  +         +  + ++++  +
Sbjct: 105 FDELNISAVSEVMNQ-MMGASSTALSEFLGMGIDISTPTPYILSEINIAD-LQNYEQTDM 162

Query: 83  FSQASLSSW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  +          S F      +L  TL + ++G +    P +   + +   + + + 
Sbjct: 163 VAAINFDLTIDGVIKSEFISVLDIDLAATLADRMIGGATSPEPIVTEPAPAPAPQPVPQA 222

Query: 138 TIAQISAVLNQC--------ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN-- 187
              Q +A + Q         +                   +      ++ +         
Sbjct: 223 EPVQQAAPVQQATPVPQATPMPQVAPVQQAAPVPQAAPMPQVAPVPQADMYAQQGYYGYP 282

Query: 188 ---MTIENVASSFVLII-PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
              M           ++ PQ  +          ++       +  +        + + I 
Sbjct: 283 NPAMNPAMYGQPVQPVMQPQPAVNYRNAQLAQFESFEAPLGSEQKENLQ-LLMDVPLQIS 341

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             I   K  +KD++    G +I    +      +  NG  I   ++  +  N+ +RIT+ 
Sbjct: 342 VEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAVRITEI 401

Query: 304 INFD 307
           +   
Sbjct: 402 VKSK 405


>gi|134298951|ref|YP_001112447.1| MCP methylation inhibitor CheC [Desulfotomaculum reducens MI-1]
 gi|134051651|gb|ABO49622.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1]
          Length = 333

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 87/295 (29%), Gaps = 24/295 (8%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88
               I   +G +          + +   V I Y      +   +  SF   ++  +    
Sbjct: 34  QELDIIGEIGNICMGTAATTLSQLLSQRVIIGYPKIIVCQQDEVFGSFSTPYLIIEVQFK 93

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVL 146
              +    +  +   +  + + ++G + +      +    LS   +    + I   +  +
Sbjct: 94  EGLNGFNVLVINEEEIAIIADIMMGGNGQVTKPVMITEMELSASTEA-MNQMIGSSATAM 152

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---- 202
                   + +P      +      +T   +++ V      +TI ++  +  + I     
Sbjct: 153 ADLFGIGIDIAPPKATMVEDLLNASHTPLPTDKPVVVARFEITIGDIIKTTFMQITNVDA 212

Query: 203 ----QETLLKTTLISLSSQNKSENQSEDLIDPFARK-----------TYQLNVNIDTRIN 247
                  LL       +   + +   E +I  F +               + V+++  + 
Sbjct: 213 ARDQANYLLMKAGACDAENTEEKASDETVIQNFTQTKAPFDLPNLAGALAIPVDLEFSLG 272

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             + T  D+  LK G  +           L   G  +   EL    +   I+I+ 
Sbjct: 273 KIRCTAGDLAKLKKGDTLAIP-FSSQQIKLLVGGIPVALGELQTHAEETKIKISR 326


>gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
 gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
          Length = 188

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 104 DMIMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 163

Query: 293 GKNYTIRITDRINFDQKS 310
            + Y IR+TD I    + 
Sbjct: 164 DEKYGIRVTDIITPSDRI 181


>gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227]
 gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227]
          Length = 137

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKSLK 312
              Y +RITD I   ++  +
Sbjct: 115 ADKYGVRITDIITPSERMHR 134


>gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
 gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
          Length = 138

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 56  DMILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 116 ADKYGVRITDIITPSERM 133


>gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 395

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 85/290 (29%), Gaps = 42/290 (14%)

Query: 35  SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSH--IIHSFKENFVFSQASLS 89
            S++     + +              VDIS  +           I       VF + S  
Sbjct: 134 LSAVQEAMNQMMGSSATSMSTIFGKRVDISPPTLHLLNVREEKGIEYLPNEDVFIKVSFR 193

Query: 90  S-----WSSNFFIGCSNNLVITLLENLLGASHETIPQL--YNRSLSTVEKKLAKRTIAQI 142
                   SN       +    L++ LL +S E+  +    N +    ++   +      
Sbjct: 194 LKIGDLIDSNIMQLLPVDFAKELVKQLLHSSGESSGEPTSSNSAPEAEKEAAVQEAAVSQ 253

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
            +V  + I       P+    ++         +     + +++                 
Sbjct: 254 PSVTAEAIGAQPSYEPSKTAAHETANHFGANAKSGERQIQSVDF---------------- 297

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
                            S +   ++ +        + + +   +   K ++++++ L  G
Sbjct: 298 -AEFEP-----------SPSADTEVKNL--SLLLDVPLQVTVELGRTKRSVQEILQLSSG 343

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            +I           +  N K I   E+  + +N+ +R+TD I+   +  K
Sbjct: 344 SIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVTDIISQSDRLKK 393



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 57/194 (29%), Gaps = 2/194 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+  S    +  ++   F              
Sbjct: 37  QDALGEIGNISFGSSATALSVLLNQKVEITTPSVSIIQRKNVDSEFPLPYVAIQVNYTDG 96

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + +LG               +  ++   + +   +  ++   
Sbjct: 97  FLGTNLLVIKQEDAAIIADLMLGGDGTNTADELGEIQLSAVQEAMNQMMGSSATSMSTIF 156

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
               + SP      ++   K      + +    ++  + I + + S+ + ++P +   + 
Sbjct: 157 GKRVDISPPTLHLLNVREEKGIEYLPNEDVFIKVSFRLKIGDLIDSNIMQLLPVDFAKEL 216

Query: 210 TLISLSSQNKSENQ 223
               L S  +S  +
Sbjct: 217 VKQLLHSSGESSGE 230


>gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
 gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
          Length = 179

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 95  DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 154

Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
              Y IR+TD I   ++ +    ++R
Sbjct: 155 EDKYGIRLTDIITPSER-INRLNNRR 179


>gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52]
          Length = 290

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 25/230 (10%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           LV  L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L  
Sbjct: 70  LVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN- 122

Query: 163 FYDIDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK------------T 209
            +     +        E     I  +  +E +  S ++++      +             
Sbjct: 123 -FTTINAEIAKELPKKEDYAKMIVFSFKMEALQESQIILLTTVAFERQFKKTHQEEKEEK 181

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
              + S+  + +     L +   R       + +N+  RI  KK  LKDVV++ IG V+ 
Sbjct: 182 EETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVE 241

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                     +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 242 LDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290


>gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium papyrosolvens DSM 2782]
 gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium papyrosolvens DSM 2782]
          Length = 400

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 1/110 (0%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
            PQ      ++  +  Q   +  S       +     L + +   +   +  +KD++   
Sbjct: 292 EPQRQRSPVSVQPVQFQAFDDGLSATEKKNIS-LIMDLPLQVTVELGRTQKLIKDILEFG 350

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            G VI           +  NGK I   E+  + +++ +RITD I+  ++ 
Sbjct: 351 SGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKRL 400


>gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC
           824]
 gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain
           [Clostridium acetobutylicum ATCC 824]
          Length = 413

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + I   +   K  +KD++ L  G +I      +    +  NGK++   E+  V
Sbjct: 331 DLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVV 390

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +RIT  +N +++ 
Sbjct: 391 DENFGVRITSIVNSEERI 408



 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 59/201 (29%), Gaps = 2/201 (0%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +            +   V+I+           +  +F+          +S 
Sbjct: 43  KDLLGEIGNISMGSASTALSTIIGQKVNITTPIVSVTTLETLKKNFEVPNVALDVKYVSG 102

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            S    +         +   ++G   +   +  +    +   +   + I   +  +   +
Sbjct: 103 ISGENLLVMKVTDAAVIANLMMGGDGKVESKTLSEIELSAVSEAMNQMIGSAATSMATML 162

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
                 SP +   +D        N   +E +  +   +TI + V S  + I+P +T  K 
Sbjct: 163 LREVNISPPVSKIWDSKTDVLTDNIKEDENIVQVAFKLTIGDLVDSQIMQILPIDTSRKM 222

Query: 210 TLISLSSQNKSENQSEDLIDP 230
             I +   +  E         
Sbjct: 223 IDIMMGGSSNKEEPEVQQSAA 243


>gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein
           [Edwardsiella tarda EIB202]
 gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein
           [Edwardsiella tarda EIB202]
 gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60]
          Length = 137

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              + +RITD I   ++ 
Sbjct: 115 NDKFGVRITDIITPSERM 132


>gi|255026112|ref|ZP_05298098.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
          Length = 515

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/286 (9%), Positives = 84/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +S  + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLSVPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515


>gi|21672365|ref|NP_660432.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008471|sp|Q8KA39|FLIM_BUCAP RecName: Full=Flagellar motor switch protein FliM
 gi|21622970|gb|AAM67643.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 311

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 91/269 (33%), Gaps = 10/269 (3%)

Query: 24  KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF 83
                +   K    +   + + +  IF   +  ++++++ + +   +++   +F ++   
Sbjct: 26  DRFLDQNEMKKLEKINKKFIQKIIMIFSSFIKSNIELNFYTVKINSYTNDDKNF-KHLYA 84

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY-NRSLSTVEKKLAKRTIAQI 142
           +   + +     FI  S N +   ++ L G    +I ++   + ++  E  + K+ +  I
Sbjct: 85  NSLKIETLEKKSFIFFSPNFLSVFIDFLFGGKGNSIIRMDIKKEITYTEHVINKKIVGFI 144

Query: 143 SAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
                +             DF  I           +N+   T   +  +  +     ++I
Sbjct: 145 IDAYCESCKDFFYIDIKFLDFNIIKLNKHFF---YTNDLFITNYFSFNLNGIKIFLSILI 201

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           P   + +     ++  +K+    + ++    F      + +++   +     +      L
Sbjct: 202 PVSIIKEKNKKIINFLDKNIFSKKTILKENFFIENLSNIELDVTVELIPSYISKHTFDNL 261

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCE 288
           + G VI           +    K I+  +
Sbjct: 262 REGDVITIEDP--GKVTVCIEKKPIFLGK 288


>gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus curdlanolyticus YK9]
 gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus curdlanolyticus YK9]
          Length = 411

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 81/311 (26%), Gaps = 45/311 (14%)

Query: 21  LTGKLGD--KKTIEKI-SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKF--SH 72
           + G  G+     + +I  S++     + +           +  V+IS             
Sbjct: 125 MLGGEGEVMPAELNEIHISAVQEAMNQMMGSSATSMSTIFNRFVNISPPGINILDVENGD 184

Query: 73  IIHSFKENFVFSQASLSSWSS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            +++  +  VF   S                   +    ++  L+G   E        + 
Sbjct: 185 GVNTLPDEDVFINVSFRLMIGDLIDSTIMQLLPVSFAKQMVATLMGGMDEPAAPAPVAAA 244

Query: 128 STVEKKLAKRTIAQISAV------LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
                  A   ++   A       + +         P            +  N       
Sbjct: 245 VETAAPAAPAQVSAPPAAAYTPPPMQEA-PPMYAQQPMYAQQPMYAQPPQGPN------- 296

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
                  T   V            +      +       +    +L          + + 
Sbjct: 297 -------TYGQVPGR------NVNVQPVQFANFQGAPYVQADDTNL-----NLLLDIPLK 338

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +   +  +KD++ L  G +I           +  N K I   E+  + +N+ +R+T
Sbjct: 339 VTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVT 398

Query: 302 DRINFDQKSLK 312
           D ++   +  K
Sbjct: 399 DIVSQWDRMQK 409



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 67/218 (30%), Gaps = 3/218 (1%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           QS   +T  + P     +          +     +G +            +   VDI+  
Sbjct: 18  QSSDDDTDSVAPSAETAVIAD-FLNNIEQDALGEIGNITFGSAATALSTLLGKKVDITTP 76

Query: 64  SCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
                K S +   F +     S   +  +     +    +    + + +LG   E +P  
Sbjct: 77  QVTLVKRSELKDVFPKPHVAVSVQYVDGFQGINSLVIKTHDAQVIADLMLGGEGEVMPAE 136

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
            N    +  ++   + +   +  ++   +     SP   +  D++           +   
Sbjct: 137 LNEIHISAVQEAMNQMMGSSATSMSTIFNRFVNISPPGINILDVENGDGVNTLPDEDVFI 196

Query: 183 TINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNK 219
            ++  + I + + S+ + ++P     +     +   ++
Sbjct: 197 NVSFRLMIGDLIDSTIMQLLPVSFAKQMVATLMGGMDE 234


>gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 97

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                 ++ D           + + ++  +   + T++D++ L  G VI           
Sbjct: 1   MEAQTPRNGDSTRRL-DLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLD 59

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG+ +   E   V   + +RITD ++  ++ 
Sbjct: 60  ILVNGRLVARGEAVVVNDKFGVRITDIVSPQERI 93


>gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20]
          Length = 290

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 94/286 (32%), Gaps = 26/286 (9%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
              +  +     +      S                   +++    S+  +     LV  
Sbjct: 14  STLEGLVGKAPSVGLEKEVSNSEESWESLISVPYARVVISAIEKEESSIELLAPVVLVTA 73

Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           L + +LG    +  ++ N  L   ++ +A      I+  L       QE  P L   +  
Sbjct: 74  LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125

Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK------------TTLIS 213
              +        E     +  +  +E +  S ++++      +                +
Sbjct: 126 INAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAVFERQFEKTHQEEKEEKEETT 185

Query: 214 LSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
            S+  + +     L +   R       + +N+  RI  KK  LKDVV++ IG V+     
Sbjct: 186 KSAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 245

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 246 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290


>gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018]
          Length = 395

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + I   +   K  +KD++ L  G +I      +    +  NGK++   E+  V
Sbjct: 313 DLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVV 372

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +RIT  +N +++ 
Sbjct: 373 DENFGVRITSIVNSEERI 390



 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 59/201 (29%), Gaps = 2/201 (0%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           + +   +G +            +   V+I+           +  +F+          +S 
Sbjct: 43  KDLLGEIGNISMGSASTALSTIIGQKVNITTPIVSVTTLETLKKNFEVPNVALDVKYVSG 102

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            S    +         +   ++G   +   +  +    +   +   + I   +  +   +
Sbjct: 103 ISGENLLVMKVTDAAVIANLMMGGDGKVESKTLSEIELSAVSEAMNQMIGSAATSMATML 162

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
                 SP +   +D        N   +E +  +   +TI + V S  + I+P +T  K 
Sbjct: 163 LREVNISPPVSKIWDSKTDVLTDNIKEDENIVQVAFKLTIGDLVDSQIMQILPIDTSRKM 222

Query: 210 TLISLSSQNKSENQSEDLIDP 230
             I +   +  E         
Sbjct: 223 IDIMMGGSSNKEEPEVQQSAA 243


>gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein
           [Paenibacillus polymyxa SC2]
 gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus polymyxa SC2]
          Length = 437

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 33/80 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   +  +KD++ L  G +I           +  N K I   E+  +
Sbjct: 356 NLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMVNNKLIAKGEVVVI 415

Query: 293 GKNYTIRITDRINFDQKSLK 312
            +N+ +R+TD ++   +  K
Sbjct: 416 DENFGVRVTDIVSQWDRIQK 435



 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 65/225 (28%), Gaps = 5/225 (2%)

Query: 1   MRGQSIH---KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57
           +  + I    K +        A  T         +     +G +            +   
Sbjct: 7   LSQEEIDALLKQSEAGTDSTPAGKTVDDFLTSLEQDALGEIGNITFGSAATALSTLLGQK 66

Query: 58  VDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           VDI+         S    +F +         +  +     +         + + +LG   
Sbjct: 67  VDITTPKVSIITRSEFETAFPKPHVAVHVNYVDGFEGINSLVIKKRDAQVIADLMLGGEG 126

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
               +  N    +  ++   + +   +  ++   +     SP   D  D  +    ++  
Sbjct: 127 NPADEELNEIHISAVQEAMNQMMGSSATSMSTMFNRFVNISPPGIDILDPLHGDGVSSLP 186

Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKS 220
             E + T++  + I + + S+ + ++P     K   I ++     
Sbjct: 187 DEETLITVSFRLLIGDLIDSTLMQLLPVNFAKKMVSILMNGGEDD 231


>gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
 gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ]
          Length = 155

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K ++ L  G V+           +  NG  I   E+  V
Sbjct: 73  DMIMDIPVKLSVELGRTRITIKQLLELAQGSVVELDGLAGEPMDILINGYLIAQGEVVVV 132

Query: 293 GKNYTIRITDRINFDQKSLK 312
              Y IRIT+ I   ++  K
Sbjct: 133 DDKYGIRITEIITPSERVQK 152


>gi|119384526|ref|YP_915582.1| surface presentation of antigens (SPOA) protein [Paracoccus
           denitrificans PD1222]
 gi|119374293|gb|ABL69886.1| surface presentation of antigens (SPOA) protein [Paracoccus
           denitrificans PD1222]
          Length = 392

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 77/260 (29%), Gaps = 13/260 (5%)

Query: 55  DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114
            L V +          + +     E  + +        +   +    +L+  L+E     
Sbjct: 74  GLPVFVEKVERAGMVLAELPELLPERALLAVVGGRR-DALGVVAICPDLLAALIEMQAIG 132

Query: 115 SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ--CISTTQESSPNLEDFYDIDYLKKN 172
              + P    R  +  +  ++   +  + A L +                   +D  +  
Sbjct: 133 RVTSRPAPPRRP-TRTDAAISADFVNALLAELGRECAARDGCPDFGAYRYATFMDDPRPL 191

Query: 173 TNRLSNEFVTTINMNMTIE---NVASSFVLIIPQETLLKT--TLISLSSQNK---SENQS 224
           +  L +  +T ++    I          ++ +P               +Q++   + +  
Sbjct: 192 SLLLEDGEMTRLDFRFRIGTGGQRDGRLMIALPARVGAPPDAVPAIAGNQSRLPVAPSAD 251

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKE 283
             +    A    +  + +   +  ++ +L  +  L  G ++P        A L    G+ 
Sbjct: 252 PPVAPSLAEAVQEAPIRLAGILCRRRLSLHQLRGLATGSLLPLPQNVLDEARLETPQGQL 311

Query: 284 IYSCELGRVGKNYTIRITDR 303
           +    LG     + IR+ D 
Sbjct: 312 LARGRLGEKDGFHAIRLRDI 331


>gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
 gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
          Length = 137

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDVLINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              + +RITD I   ++ 
Sbjct: 115 NDKFGVRITDIITPSERM 132


>gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 416

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 81/306 (26%), Gaps = 35/306 (11%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSGKF--S 71
           + G  G     E ++        + +            E +   +DI+        F   
Sbjct: 127 MLGGDGVSDLPEDLTEMHLSAISEAMNQMMGAASTSLSEMLGGKIDITPPKVSRVNFKGD 186

Query: 72  HIIHSFKENF---VFSQASLS---SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
            +     +     + +   +       S             L++ ++G +  +   +   
Sbjct: 187 RLDPDIIDPAQEIMCTSFRMRVGNLIDSEIMQILPIEFARKLIDKIMGNTGVSEEVVEQE 246

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
           +    E+                     Q + P  E       +       +        
Sbjct: 247 APPVQEQ-------------------PQQAAPPIQEVPQAPPVMPPQEQYQAPPPQYYQA 287

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQN-KSENQSEDLIDPFARKTYQLNVNIDT 244
                       +      +     +      +  S   S   +         + + I  
Sbjct: 288 PPPQYYQAPPMPMQYEQMPSQQSVRVQQAQFSSFDSLAMSNIQVPENMDLIKDVMLQITV 347

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +      + +++  K G V+           + ANGK+I + E+  + +NY IRITD +
Sbjct: 348 ELGKTVKPINEILDFKPGSVLELDKVVGESLDILANGKKIATGEVVVIDENYGIRITDIV 407

Query: 305 NFDQKS 310
             D++ 
Sbjct: 408 KPDKRL 413


>gi|74101638|gb|AAZ99728.1| FliML [Aeromonas hydrophila]
          Length = 291

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/307 (10%), Positives = 81/307 (26%), Gaps = 43/307 (14%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K       + + R        K +     +        + ++F              C+ 
Sbjct: 20  KTLPHYDLLGVER--ADREQLKQVNAQLGTFSLQAAGCMAQLFNS----------ADCE- 66

Query: 68  GKFSHIIH--SFKENFVFSQASLS-SWSSN--FFIGCSNNLVITLLENLLGASHETIPQL 122
             +   I   S +++             +    +   S +++  L     G S     + 
Sbjct: 67  LTYQEFIAVSSPEDDDGLIWIEARSPLDTQRVVYFSISPSVIYRLAVLFFGGSLRNQEET 126

Query: 123 YN--RSLSTVEKKLAKRTIAQISAVLNQCIS-TTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            +  + L+  E++L  R       + + C+     E    L     +   +         
Sbjct: 127 VSHSKGLTDTEQRLVLRLCQYQVDIWSSCLGLGDLEWQLTLITCDALPVSRL-------- 178

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
           ++    + +   +      L+ P     +T      +                +    + 
Sbjct: 179 WMAAATLTVGSFSHGWQLWLVPPA---ERTGPAVGHTLQD---------GALEQALAHIP 226

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
             +   +     TL D+  LK+G V+     E   A      +  +S  +     +   +
Sbjct: 227 ARLRVVMGQLSMTLADLECLKVGDVLSLDLPEVVPA--LIGNRPCFSGRIAEHKGSLVYQ 284

Query: 300 ITDRINF 306
           +   +  
Sbjct: 285 VATVVEE 291


>gi|313620056|gb|EFR91570.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
          Length = 398

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/284 (9%), Positives = 83/284 (29%), Gaps = 26/284 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 116 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 174

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 175 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 234

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 235 NFGDTMIQKNIAEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 294

Query: 223 ---------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
                                + ++ +    +    + V ++      K  L+  ++   
Sbjct: 295 EATPVEIMAHETKEPAQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCE 354

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
             VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 355 KDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 398


>gi|16799783|ref|NP_470051.1| flagellar motor switch protein [Listeria innocua Clip11262]
 gi|16413160|emb|CAC95940.1| lin0708 [Listeria innocua Clip11262]
          Length = 513

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/284 (9%), Positives = 83/284 (29%), Gaps = 26/284 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIAEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409

Query: 223 ---------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
                                + ++ +    +    + V ++      K  L+  ++   
Sbjct: 410 EATPVEIKEHETKEPAQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCE 469

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
             VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 KDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 513


>gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
           DSM 12885]
 gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
           DSM 12885]
          Length = 287

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 35/78 (44%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   + T+++++ +  G V+           L  NG+ I   E+  +
Sbjct: 206 DLVLDVPLQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVI 265

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ IRITD ++  ++ 
Sbjct: 266 DENFGIRITDIVSPGERL 283


>gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
 gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
 gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 97

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                 ++ D           + + ++  +   + T++D++ L  G VI           
Sbjct: 1   MEAQTPRNGDSTRRL-DMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLD 59

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG+ +   E   V   + +RITD ++  ++ 
Sbjct: 60  ILVNGRLVARGEAVVVNDKFGVRITDIVSPQERI 93


>gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 415

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 33/80 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   +  +KD++ L  G +I           +  N K I   E+  +
Sbjct: 334 NLLMDIPLKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVI 393

Query: 293 GKNYTIRITDRINFDQKSLK 312
            +N+ +R+TD ++   +  K
Sbjct: 394 DENFGVRVTDIVSQWDRIQK 413



 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/194 (9%), Positives = 60/194 (30%), Gaps = 2/194 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  VDI+         S     F +         +  
Sbjct: 38  QDALGEIGNITFGSAATALSTLLNKKVDITTPKVSVITRSQFEAEFPKPHVAIHVQYVDG 97

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + +LG   +   +  N    +  ++   + +   +  ++   
Sbjct: 98  FEGMNSLVIKTRDAQVIADLMLGGEGDPAEEELNEIHISAVQEAMNQMMGSSATSMSTIF 157

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +     SP   D  ++      ++   ++ +  I+  +TI + + S+ + ++  +   + 
Sbjct: 158 NRFVNISPPGVDILNMSNGNGLSSLPESDPLIKISFRLTIGDLIDSTIMQLLTVKFAKEM 217

Query: 210 TLISLSSQNKSENQ 223
               +S      N 
Sbjct: 218 VDSLISGSTAETNA 231


>gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 375

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 34/78 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V I   +   + T+ +++ +  G V+           +  NGK I   E+  +
Sbjct: 293 DLISDIPVRITVELGRTRKTIGEILNMSPGSVVELNRMAGEPVDVLVNGKLIARGEVVVI 352

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +R+T+ ++  ++ 
Sbjct: 353 DENFGVRVTEIVSRAERI 370


>gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073]
 gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972]
 gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
 gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
 gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073]
 gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972]
 gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
 gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
 gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972]
 gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1]
          Length = 137

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G]
 gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180]
 gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357]
          Length = 134

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 52  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 112 ADKYGVRITDIITPSERM 129


>gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 134

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 52  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 112 ADKYGVRITDIITPSERM 129


>gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae]
          Length = 139

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 59  IMDIPVKLTVELGRTKMTIKKLLNLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 118

Query: 295 NYTIRITDRINFDQKS 310
            Y IRITD I   ++ 
Sbjct: 119 KYGIRITDIITPSERM 134


>gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda]
          Length = 134

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 52  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVV 111

Query: 293 GKNYTIRITDRINFDQKS 310
              + +RITD I   ++ 
Sbjct: 112 NDKFGVRITDIITPSERM 129


>gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536]
 gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11]
 gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39]
 gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026]
 gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412]
 gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354]
 gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli
           FVEC1302]
 gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
 gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
 gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101]
 gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
 gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536]
 gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11]
 gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia
           coli IAI39]
 gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia
           coli UMN026]
 gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82]
 gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412]
 gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354]
 gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli
           FVEC1302]
 gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
 gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
 gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101]
 gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
 gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3]
 gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327]
 gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2]
 gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1]
          Length = 137

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
 gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
          Length = 137

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
 gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
 gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
 gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
          Length = 137

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|317051534|ref|YP_004112650.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
 gi|316946618|gb|ADU66094.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
          Length = 330

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/329 (10%), Positives = 92/329 (27%), Gaps = 43/329 (13%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
           +   +GD +      S    +    L       ++  +++             + +  + 
Sbjct: 1   MLNMVGDSEDDGPDLSDFSRIVVSNLSSSMGTSINNPLEMQVAGEGMVS-GDALGAEPQV 59

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            +         +   F+    ++    ++ ++         +    L      L   + +
Sbjct: 60  ILSRVPFEEGATGTMFLVAPISMASIFVDLMMMGEGTAKDSMEEDDLDAYS-DLLNTSFS 118

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI-ENVASSFVL 199
                LN+      +           D     +  L +E +  + +++     V  +  L
Sbjct: 119 SCVVPLNEAAQGV-KFRFASVSSSVFDQDSLAS-ALGDESLYRLEISVNAPGKVDGTLQL 176

Query: 200 IIPQETLLKTTLISLSSQNKSENQS----------------------------------- 224
           +IPQ    + +      ++ S+                                      
Sbjct: 177 LIPQTLAQEISSAFSEQESASDGDDLFDFSDVDLENLAADDSSADFGGFDSGGGGGGAGS 236

Query: 225 -EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                +          +++ +  RI   K  LKD++ L  G ++    +      L  N 
Sbjct: 237 SSLNKEQMRNIEMLLDIDLAVIIRIGSTKIYLKDLLKLGSGSIVELDKKAGDPVELVVNK 296

Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKS 310
           K I   E+  +  N+ +RI + ++   + 
Sbjct: 297 KVIARGEVVVIDANFGLRINEILSKRDRL 325


>gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
 gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
          Length = 133

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 51  DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 111 ADKYGVRITDIITPSERM 128


>gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
          Length = 164

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 43/101 (42%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
                 Q   +  +E  I     +   + +N++  +      +++++ L  G V+     
Sbjct: 53  EAPPQEQVAEKKVTERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELDRE 112

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
                 +  NGK I   EL  VG+ + +RIT+  + ++KS+
Sbjct: 113 TTEPVDIKVNGKLIAKGELVVVGEKFGVRITEIYSEERKSV 153


>gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863]
 gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
 gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v]
          Length = 137

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
          Length = 138

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 56  DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 116 ADKYGVRITDIITPTERM 133


>gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
 gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
          Length = 419

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 81/309 (26%), Gaps = 30/309 (9%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK---FSHIIHSFKENFV 82
            D+  I  +S  +             E + + +DIS  +         +  + ++++  +
Sbjct: 105 FDELNISAVSEVMNQ-MMGASSTALSEFLGMGIDISTPTPYILSEINIAD-LQNYEQTDM 162

Query: 83  FSQASLSSW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  +          S F      +L  TL + ++G +    P     + +         
Sbjct: 163 VAAINFDLTIDGVIKSEFISVLDIDLAATLADRMIGGATSPEPIATEPAPAPAPAPQPVP 222

Query: 138 TIAQISAVL----------NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
               +                 +                  + +         V   +M 
Sbjct: 223 QAEPVPQAATVQQAAPVQQATPMPQVAPVQQAAAPVPQATPMPQVAPVPQVAPVPQADMY 282

Query: 188 MTIENVASSFVLII---------PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                       +          PQ  +          +N       +  +        +
Sbjct: 283 AQQGYYGYPNPAMYGQPVQPVMQPQPAVNYRNAQLAQFENFEAPLGSEQKENLQ-LLMDV 341

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + I   I   K  +KD++    G +I    +      +  NG  I   ++  +  N+ +
Sbjct: 342 PLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAV 401

Query: 299 RITDRINFD 307
           RIT+ +   
Sbjct: 402 RITEIVKSK 410


>gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
 gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1]
 gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88]
 gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
 gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
 gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
 gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1]
 gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia
           coli S88]
 gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
 gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034]
 gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
 gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146]
 gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3]
 gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252]
 gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263]
          Length = 137

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
 gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
          Length = 377

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   +  +KD++ +  G +I           +  N K I   E+  + +
Sbjct: 299 IMDVYMEVTVELGRTRMIIKDILGMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVIDE 358

Query: 295 NYTIRITDRINFDQKSLK 312
           N+ +R+T+ ++  ++   
Sbjct: 359 NFGVRVTEILSPVERIAD 376


>gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185]
 gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont]
          Length = 136

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 54  DLIMDIPVKLTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQGEVVVV 113

Query: 293 GKNYTIRITDRINFDQ 308
              Y +RITD I   +
Sbjct: 114 NDKYGVRITDIITPSE 129


>gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
           35316]
 gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
           35316]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 134

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 52  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 112 ADKYGVRITDIITPSERM 129


>gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC
           BAA-895]
 gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|313624702|gb|EFR94658.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
          Length = 398

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/284 (9%), Positives = 83/284 (29%), Gaps = 26/284 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 116 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 174

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 175 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 234

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 235 NFGDTMIQKNIAEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 294

Query: 223 ---------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
                                + ++ +    +    + V ++      K  L+  ++   
Sbjct: 295 EATPVEIMEHETKEPEQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCE 354

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
             VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 355 KDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 398


>gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605]
 gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206]
 gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15]
 gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86]
 gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605]
 gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10]
 gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
 gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
 gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1]
 gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
 gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
 gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10]
 gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
 gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
 gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
 gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
 gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004]
 gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038]
 gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 138

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 56  DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 116 ADKYGVRITDIITSSERM 133


>gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617]
          Length = 133

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 51  DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 111 ADKYGVRITDIITPTERM 128


>gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
 gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
          Length = 133

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 51  DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 111 ADKYGVRITDIITPTERM 128


>gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
 gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
          Length = 136

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 54  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 113

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 114 ADKYGVRITDIITPSERM 131


>gi|38639350|gb|AAR25816.1| BcscQ [Burkholderia multivorans E243]
          Length = 383

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 75/291 (25%), Gaps = 19/291 (6%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           L P+      G   D      I ++L       L    +      V++     +     H
Sbjct: 100 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 158

Query: 73  IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
                     F        W  +  +       + +      AS    P       + + 
Sbjct: 159 AS---PAALRFELRRADGAWRCHGALLFDGPDALAV----FFASAPAAPPDAAALYANLP 211

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             LA                        +E +   +        +       I       
Sbjct: 212 VPLAFELGRTALTAAELA-DVVAGDIIAIEHWRAHEQDLLCVAYVRAAPAWEITGRPAGN 270

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            +    +  +P   L      S S+       ++       R    L V++   +     
Sbjct: 271 RLTVQRIREMP---LEPPRTDSASAAAPDAPPADT-----PRSLDGLAVDLRFELPPTSM 322

Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
            L ++ TL+ G VI   H        L ANG  I + +L  VG+   +R+ 
Sbjct: 323 PLGELGTLQPGAVIELSHGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 373


>gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7
           EDL933]
 gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           Sakai]
 gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS]
 gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC869]
 gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC508]
 gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
 gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A]
 gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22]
 gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019]
 gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171]
 gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
 gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11]
 gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1]
 gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a]
 gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989]
 gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B]
 gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O103:H2 str. 12009]
 gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O26:H11 str. 11368]
 gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O111:H- str. 11128]
 gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           CB9615]
 gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088]
 gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
 gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
 gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
 gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
 gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
 gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
 gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
 gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
 gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
 gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
 gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
 gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
 gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W]
 gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
 gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143]
 gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271]
 gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280]
 gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591]
 gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299]
 gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing,
           enabling rotation and determining its direction
           [Escherichia coli O157:H7 str. EDL933]
 gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           Sakai]
 gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS]
 gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
 gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC869]
 gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC508]
 gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A]
 gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22]
 gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019]
 gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171]
 gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
 gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11]
 gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia
           coli 55989]
 gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia
           coli IAI1]
 gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia
           coli ED1a]
 gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia
           coli O157:H7 str. TW14359]
 gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O26:H11 str. 11368]
 gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O103:H2 str. 12009]
 gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O111:H- str. 11128]
 gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042]
 gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088]
 gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
 gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
 gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
 gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
 gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
 gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
 gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
 gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
 gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
 gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
 gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
 gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
 gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W]
 gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
 gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407]
 gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia
           coli W]
 gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1]
 gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC
           74-1112]
 gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B]
 gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           G5101]
 gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14]
 gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010]
 gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68]
 gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11]
 gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520]
 gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482]
 gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120]
 gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489]
 gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007]
 gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3]
 gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167]
 gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           1044]
 gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           1125]
 gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143]
 gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271]
 gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280]
 gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591]
 gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299]
 gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82]
 gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
 gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
          Length = 293

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/296 (11%), Positives = 89/296 (30%), Gaps = 33/296 (11%)

Query: 39  GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
               ++ L +  +  ++ ++ +   +  +      ++    + V   AS   ++    IG
Sbjct: 10  LEATREALQQFLQTLLNQELTLELGTPATITTDQ-LNELAGDRVLIWASSEPFA----IG 64

Query: 99  CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
            + + +  L + +LG +     +  +  L      +A +    +   L        E S 
Sbjct: 65  LTPDWIPLLSQAMLGEALNPGDEGTDDLLGE----VAAQGYGTLRNALAAEGVRLPEVSF 120

Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET------------- 205
            ++                 + +  +   + I +      +++P                
Sbjct: 121 VVQQPGSGAAQPPVEL---PDSLLQLPFTLQIGDTRHEGFILLPPSVTQQPTSRAPKATA 177

Query: 206 -------LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
                   ++    S             +          + + I   +  ++  L DV+ 
Sbjct: 178 AGAAEQAAVEVRPASFGELGPERIGDGGVKGNL-ELLADVELEIVVELGRRRLPLADVLR 236

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           L  G +I           + ANG+ I   E   + + + +RIT  +   ++  K  
Sbjct: 237 LTTGSIIELEKLVGEPLEIYANGRLIAEGEAVVIDEQFGVRITSLVTGSRQREKAL 292


>gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
 gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
          Length = 138

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K +++L  G V+           +  NG  I   E+  V
Sbjct: 56  DMIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
             NY IRITD I   ++ 
Sbjct: 116 SDNYGIRITDIITPSERM 133


>gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004]
 gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus bovienii SS-2004]
          Length = 135

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K ++ L  G V+P          +  NG  I   E+  V
Sbjct: 53  DLIMDIPVKLSVELGRTKMTIKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVVVV 112

Query: 293 GKNYTIRITDRINFDQKS 310
              Y IRITD I   ++ 
Sbjct: 113 SDKYGIRITDIITPSERM 130


>gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
 gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
          Length = 134

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 52  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 112 ADKYGVRITDIITPSERM 129


>gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
 gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
 gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
 gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 378

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 82/293 (27%), Gaps = 55/293 (18%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF----SHIIHSFKENFVFSQ 85
            +  I  ++               ++L +DI+        F      +I   K      +
Sbjct: 129 QLSAIQEAMNQ-MVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVK 187

Query: 86  ASLSSWSS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE---KKLAKR 137
            +                   +    L++ +L  +  T  Q    + +  E   +++ ++
Sbjct: 188 VAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETVKEEVLRQ 247

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
           T +Q +    +         P        +  ++  N                       
Sbjct: 248 TSSQTTKSQKKASQP-----PYTPPPQRKEQPQQVYNVSP-------------------- 282

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
                           +  ++  E +     +        + + I   +   +  +++++
Sbjct: 283 ----------------VQFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREIL 325

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
               G +I           +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 326 EFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 378



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 17/236 (7%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
             TSP  P +              + +   +G +            ++  V+I+      
Sbjct: 18  SETSPSSPTI----------SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSI 67

Query: 68  GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYN 124
            K+  +   F                    +      V  + + ++G +   E   +L  
Sbjct: 68  LKWDELPKEFPVPYVAIKVVYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTDELTE 127

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVT 182
             LS +++    + +   S  L+  ++   + +P       +  +  +        + + 
Sbjct: 128 LQLSAIQEA-MNQMVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIV 186

Query: 183 TINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
            +   MTI + + S  + +IP +   +     L +   +  QSE           +
Sbjct: 187 KVAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETVKE 242


>gi|145297435|ref|YP_001140276.1| lateral flagellar motor switch protein, LfiM [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850207|gb|ABO88528.1| lateral flagellar motor switch protein, LfiM [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 236

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 30/247 (12%)

Query: 68  GKFSHIIH--SFKENFVFSQASLSSW---SSNFFIGCSNNLVITLLENLLGASHETIPQL 122
             +   I   S + +         S        +   S +++  L     G S     + 
Sbjct: 12  LTYQEFIAVSSPEHDDGLIWVEARSLLDTQRVAYFSISPSVIYRLAVLFFGGSLRNQGET 71

Query: 123 YN--RSLSTVEKKLAKRTIAQISAVLNQCIS-TTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            +  + L+  E++L  R       + + C+     E    L     +   +         
Sbjct: 72  ASHSKGLTDTEQRLVLRLCQYQVDIWSSCLGLGDLEWQLTLITRDVLPVSRL-------- 123

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
           ++    + +   +      L+ P E+       +L                  +    + 
Sbjct: 124 WMAAATLTVGSFSHGWQLWLVPPAESTGPAAGHALQ------------DGTLEQALTHIP 171

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
             +   +     TL D+  LK+G V+     E   A      +  +S  +     +   +
Sbjct: 172 TRLRVVMGQLSMTLADLECLKVGDVLSLDLPELVPA--LIGNRPCFSGRIAEHKGSLVYQ 229

Query: 300 ITDRINF 306
           +   +  
Sbjct: 230 VATVVEE 236


>gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
           SRS30216]
 gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
           SRS30216]
          Length = 249

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 16/185 (8%)

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFY-----------DIDYLKKNTNRLSNEFVT 182
           + + T+  +       +       P LE                    +  +++++  V 
Sbjct: 67  VGEETLNTLLMSPEGALDPVDALRPALETVVHALGQCTLEAGVEGDPAQALSQIADGAVA 126

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
            I+       +    +   P  T       + +                      + +++
Sbjct: 127 VIDAGGETLALIGLTLTAQPDTTPAPMPSFAPAGTPAPAGP-----RRTMDLLRDVQMDV 181

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     T++D++ L  G V+       + A +  NG+ I   E+  V ++Y IRIT+
Sbjct: 182 TVELGRTSMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVVVVDEDYAIRITE 241

Query: 303 RINFD 307
            +  +
Sbjct: 242 IVTPE 246


>gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70]
 gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71]
          Length = 134

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 52  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 112 ADKYGVRITDIITPSERM 129


>gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
           2489]
 gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
           2489]
          Length = 408

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   K T+KD++ L  G +I           +  N K I   E+  +
Sbjct: 327 NLIMDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVNHKPIAKGEVVVI 386

Query: 293 GKNYTIRITDRIN 305
            +N+ +R+T+ + 
Sbjct: 387 DENFGVRVTEILP 399


>gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
 gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
          Length = 138

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K +++L  G V+           +  NG  I   E+  V
Sbjct: 56  NLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
             NY IRITD I   ++ 
Sbjct: 116 SDNYGIRITDIITPSERM 133


>gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
 gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|239909253|ref|YP_002955995.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
 gi|239799120|dbj|BAH78109.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
          Length = 186

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 38/101 (37%)

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                    +++ Q  D I         + +++   +   K  + +++ L  G VI    
Sbjct: 82  KAKFKDMTPEAKAQRPDNIRRDLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNK 141

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                  +  NGK +   E   + + + +R+TD I+  ++ 
Sbjct: 142 LAGEPLEIYVNGKLVARGEAVVINEKFGVRLTDIISPIERV 182


>gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
           493-89]
 gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
           H 2687]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
           20603]
 gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
           20603]
          Length = 259

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P  T  +    +           +       R  Y + + +   I   K  ++ V+ L  
Sbjct: 156 PSPTEPEIRPFTPPMMGSGTGDDKL------RLLYDVEMTLTVEIGRAKLPVRQVLDLTP 209

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           G ++         A L  NG  +   E+  V ++Y +R+T+ I+  +
Sbjct: 210 GSIVELDRVAGAPADLLVNGHLVARGEVVVVDEDYGLRVTEIIDTTE 256


>gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. W3110]
 gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN
 gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli]
 gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia
           coli str. K12 substr. W3110]
 gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1]
 gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 137

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|325981183|ref|YP_004293585.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
 gi|325530702|gb|ADZ25423.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
          Length = 180

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 98  DLILDIPVQMTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 157

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 158 NDKFGIRLTDIITPSERIRK 177


>gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
 gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
          Length = 137

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
           BAA-2158]
          Length = 133

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 51  DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 111 ADKYGVRITDIITPTERM 128


>gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN
 gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 137

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718]
 gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718]
          Length = 137

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|301165894|emb|CBW25467.1| flagellar motor switch protein FliN [Bacteriovorax marinus SJ]
          Length = 131

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVV 257
           P   +       +S  +      +D ++    +       + + +   +   +  +KD++
Sbjct: 15  PMANVEDINTARVSQLSDEIKAGDDALNKLKVQNLDFILDIPLKVTVELGRTEVMIKDLL 74

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            L  G V+           +  NGK +   E+  V + + IR+TD I+  ++ 
Sbjct: 75  QLGQGSVLELDKLAGEPLEILVNGKLVAKGEVVVVNEKFGIRLTDIISPIERI 127


>gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74]
          Length = 134

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 52  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 112 ADKYGVRITDIITPSERM 129


>gi|146282918|ref|YP_001173071.1| flagellar motor switch protein [Pseudomonas stutzeri A1501]
 gi|145571123|gb|ABP80229.1| flagellar motor switch protein FliN [Pseudomonas stutzeri A1501]
          Length = 193

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 35/78 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +   + ++++++ L  G V+           +  NG  I   E+  V +
Sbjct: 114 ILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVVVVNE 173

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 174 KFGIRLTDVISPTERIKK 191


>gi|258511385|ref|YP_003184819.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478111|gb|ACV58430.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 381

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/346 (10%), Positives = 91/346 (26%), Gaps = 68/346 (19%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
                +   +G +            +   VDI+         S +   F   +V  Q   
Sbjct: 36  ADEIDVLGEIGNICFGSAATSLSSLLGRRVDITTPVVSILPRSEVESRFPTPYVLVQVDF 95

Query: 89  -SSWSSNFFIGC---SNNLVITLL-------------ENLLGASHETIPQLYNRSLSTVE 131
                    +         +  L+             E  L A  E + Q+   + + + 
Sbjct: 96  TEGLQGTNALAIEIEDARRIADLMMGREPSESTGELGELELSAVGEAMNQMMGSAATAMS 155

Query: 132 KKLAK---------RTIAQISAVLNQCISTTQESSPNLEDFYDID-----YLKKNTNRLS 177
           +   +         R +              +E        +  +      ++      +
Sbjct: 156 QLFGRYINISPPSVRVVTFTPDEAQAAFGPAEELVNVEFRLHVHELIDSHIMQLMPIPFA 215

Query: 178 NEFVTTINMNMT---------IENVASSFVLIIPQETLLKTTLI---------------- 212
            E V ++ ++            E          P     +                    
Sbjct: 216 RELVRSMQVHTDAIVPEPREGDERRDGDA----PVSAGAEARGKNRDDAQAANRGREDEG 271

Query: 213 ------SLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                   +  +  E  +     P A     Y + +N+   +   K  +++++ L  G +
Sbjct: 272 PSVAVRRPAFPDFDEGVTPRDARPVANLSLLYDVPLNVTVELGRAKKLIREILELAPGSI 331

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +           +  N K+I   E+  + +N+ +R+TD +  D++ 
Sbjct: 332 LELDKLAGEPVDIYVNQKKIAIGEVVVIDENFGVRVTDIVQADKRI 377


>gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
 gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
           2457T]
 gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
 gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
 gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
           2457T]
 gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
 gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017]
 gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str.
           2457T]
 gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71]
 gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671]
 gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218]
 gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272]
 gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304]
 gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227]
          Length = 137

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032]
 gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032]
          Length = 154

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 72  NLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 132 ADKYGVRITDIITPSERM 149


>gi|283853449|ref|ZP_06370693.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
 gi|283571169|gb|EFC19185.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
          Length = 190

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 37/93 (39%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            +++    + +         + +++   +   K  + +++ L  G VI           +
Sbjct: 94  QEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEI 153

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             NGK +   E   + + + +R+TD I+  ++ 
Sbjct: 154 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 186


>gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC
           27405]
 gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC
           27405]
          Length = 406

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 82/303 (27%), Gaps = 25/303 (8%)

Query: 21  LTGKLGDKKTIEKI---SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII 74
           + G  G  K  E      S++     + +           +  +DIS            +
Sbjct: 116 MMGGDGSNKEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAV 175

Query: 75  HSFKEN-------FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
              +           F         S        +    ++ N++ +  E    +   + 
Sbjct: 176 PEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEEVAA 235

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S V++ +A +   Q            Q      +  Y   Y +    +    +       
Sbjct: 236 SAVQEPVAGQHNEQYYHAQPSQQPYQQPPQQPYQQPYQQPYHQPYQQQYQQYYQPYEQPP 295

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
              +   +   +                 +   +     +          + + +   + 
Sbjct: 296 RQNDGYRNPINV------------QPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELG 343

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                +KD++    G +I           +  NGK I   E+  + +++ +RITD ++  
Sbjct: 344 RTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPS 403

Query: 308 QKS 310
           ++ 
Sbjct: 404 KRL 406



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/228 (8%), Positives = 59/228 (25%), Gaps = 11/228 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G S   N            +               +G +            +   V I
Sbjct: 14  LNGSSSEGN---------EENSANEELTSQEIDALGEIGNISMGTSATTLNSLLGQRVVI 64

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +        +  +   +  ++V  +            +    +    + + ++G      
Sbjct: 65  TTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKEDDAKVITDLMMGGDGSNK 124

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                    +   +   + I   +  ++   +   + SP       +D           +
Sbjct: 125 EGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAVPEAEFPRGD 184

Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
            +  +   M I   + S  + ++P +   K     ++S+ +     E+
Sbjct: 185 KIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEE 232


>gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
           4541]
 gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
           4541]
          Length = 138

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K +++L  G V+           +  NG  I   E+  V
Sbjct: 56  DLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
             NY IRITD I   ++ 
Sbjct: 116 SDNYGIRITDIITPSERM 133


>gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           32953]
 gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
 gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           32953]
 gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
          Length = 138

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 56  DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 116 ADKYGVRITDIITPSERM 133


>gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans
           C54]
          Length = 100

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 16  DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 75

Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
              Y IR+TD I   ++ +    ++R
Sbjct: 76  EDKYGIRLTDIITPSER-INRLNNRR 100


>gi|224498782|ref|ZP_03667131.1| flagellar motor switch protein [Listeria monocytogenes Finland
           1988]
          Length = 515

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515


>gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC
           35469]
 gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia
           fergusonii ATCC 35469]
 gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253]
 gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227]
          Length = 137

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894]
          Length = 154

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 72  NLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 132 ADKYGVRITDIITPSERM 149


>gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 378

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/293 (10%), Positives = 82/293 (27%), Gaps = 55/293 (18%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF----SHIIHSFKENFVFSQ 85
            +  I  ++               ++L +DI+        F      +I   K      +
Sbjct: 129 QLSAIQEAMNQ-MVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVK 187

Query: 86  ASLSSWSS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE---KKLAKR 137
            +                   +    L++ +L  +  T  Q    + +  E   +++ ++
Sbjct: 188 VAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETLKEEVLRQ 247

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
           T +Q +    +    +             +  ++  N                       
Sbjct: 248 TFSQTTKSQKKASQPSY-----TPPPQRTEQPQQVYNVSP-------------------- 282

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
                           +  ++  E +     +        + + I   +   +  +++++
Sbjct: 283 ----------------VQFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREIL 325

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
               G +I           +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 326 EFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 378



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 17/236 (7%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
             TSP  P +              + +   +G +            ++  V+I+      
Sbjct: 18  SETSPSSPTI----------SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSI 67

Query: 68  GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYN 124
            K+  +   F                    +      V  + + ++G +   E   +L  
Sbjct: 68  LKWDELPREFPVPYVAIKVVYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTDELTE 127

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVT 182
             LS +++    + +   S  L+  ++   + +P       +  +  +        + + 
Sbjct: 128 LQLSAIQEA-MNQMVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIV 186

Query: 183 TINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
            +   MTI + + S  + +IP +   +     L +   +  QSE           +
Sbjct: 187 KVAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETLKE 242


>gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
 gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
          Length = 137

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|303246796|ref|ZP_07333073.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
           JJ]
 gi|302491813|gb|EFL51693.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
           JJ]
          Length = 202

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 37/93 (39%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            +++    + +         + +++   +   K  + +++ L  G VI           +
Sbjct: 106 QEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEI 165

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             NGK +   E   + + + +R+TD I+  ++ 
Sbjct: 166 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 198


>gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica
           W22703]
          Length = 138

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 56  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 116 ADKYGVRITDIITPSERM 133


>gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
 gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
          Length = 138

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 56  DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 116 ADKYGVRITDIITSSERM 133


>gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum
           SCRI1043]
 gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
 gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum
           SCRI1043]
          Length = 137

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 SDKYGVRITDIITPSERM 132


>gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium carboxidivorans P7]
 gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
           P7]
 gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium carboxidivorans P7]
 gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
           P7]
          Length = 406

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + ++I   +   K  +KD++ L  G +I      +    +  NGK +   E+  V
Sbjct: 325 DLILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAYGEVVVV 384

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +RIT  I+ +++ 
Sbjct: 385 DENFGVRITSIISSEERI 402



 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 62/225 (27%), Gaps = 9/225 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S    TS   P      +           +   +G +            ++  V+I+   
Sbjct: 27  SEETKTSEETPETSNE-SELPALTDIERDLLGEIGNISMGSASTALSTIINQQVNITTPI 85

Query: 65  CQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
               +   +   F+          +S       +         +   ++G          
Sbjct: 86  VTITRLKDLKDQFEVPNVALEVKYVSGIVGENLLVMKITDAAVIANLMMGGDGNVEG--D 143

Query: 124 NRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            + LS +E         + I   +  +          SP +   ++            +E
Sbjct: 144 PKELSEIELSAVSEAMNQMIGSAATSMATMFMREVNISPPVSTIWNDLKSPVAKGISEDE 203

Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
            +  ++ ++ I + V S+ + I+P  T  K   I +  ++     
Sbjct: 204 PIIKVSFSLAIGDLVDSTIMQILPIATAKKIVSIMMGQESPEGEA 248


>gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905]
          Length = 137

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 287

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 35/82 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + VN+   +   + ++KD+++L  G +I           +  NGK I   E+  +
Sbjct: 206 ELLLDVKVNVSVELGRSRVSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVI 265

Query: 293 GKNYTIRITDRINFDQKSLKNF 314
            +++ +RI D I   ++     
Sbjct: 266 DESFGVRILDIIAPKERLKAEL 287


>gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
 gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
          Length = 125

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 40/95 (42%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            ++         +    R+  ++ + ++  I      L +++ L  G V+   +  ++  
Sbjct: 27  GRHGEGQGDSQDLSEKVRRFLEIPLELEVVIGRTTLKLGELLHLGPGSVVELDNHVESPV 86

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +  NGK +   E+  V   + +RITD I  +++ 
Sbjct: 87  DILVNGKLVAKGEIVVVEDKFGVRITDIIAREERI 121


>gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
 gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
          Length = 155

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V +   +   + T+K ++ L  G V+           +  NG  I   E+  V
Sbjct: 72  ERILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAGQPLDVLINGYLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKSLK 312
            + Y IR+TD +   ++  K
Sbjct: 132 NEKYGIRLTDIVTPSERMQK 151


>gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
 gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
          Length = 137

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|260222422|emb|CBA31970.1| Flagellar motor switch protein fliN [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 162

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 81  VLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 140

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD +   ++ 
Sbjct: 141 KFGIRLTDVVTPSERL 156


>gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum
           BKT015925]
 gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum
           BKT015925]
          Length = 417

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 37/78 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + I   +   K ++KDV+ L  G +I      +    +  NGK+I   E+  V
Sbjct: 335 DLILDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVV 394

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +RI + ++ +++ 
Sbjct: 395 DENFGVRIVNIVSGEERV 412



 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 73/232 (31%), Gaps = 12/232 (5%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +SI +NT  L          +  + K  +    +   +G +            +   V+I
Sbjct: 35  ESIEENTQVLENTENVENIEESSEDKITDIEMDLLGEIGNISMGSASTALSTIIGSAVNI 94

Query: 61  SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +    +      +  +F+           S       +         +   ++G      
Sbjct: 95  TTPQVRVTTLKELRDTFEVPNIALEVKYTSGIIGGNLLVMKIPDAAVIANLMMGGDGRIE 154

Query: 120 PQLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
            +     L+ +E+        + I   +  +    S     SP +   +  + +      
Sbjct: 155 EKS---ELTEIEESAVSEAMNQMIGSAATSMATMFSREVNISPPVSKIWKDNSMPLCETI 211

Query: 176 LSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
             +E +  ++  +TI + V S+ + I+P +T  K   I +  + K E   + 
Sbjct: 212 KEDEDIIEVSFKLTIGDLVDSNIMQILPIKTAKKIVSIMMGQEEKGEAVEQS 263


>gi|187478202|ref|YP_786226.1| flagellar motor switch protein [Bordetella avium 197N]
 gi|115422788|emb|CAJ49316.1| flagellar motor switch protein [Bordetella avium 197N]
          Length = 172

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 88  DLVMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 147

Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
            + Y IR+TD I   ++ +    ++R
Sbjct: 148 EEKYGIRLTDIITPSER-INRLNNRR 172


>gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937]
 gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937]
          Length = 138

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 56  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 116 SDKYGVRITDIITPSERM 133


>gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
 gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
          Length = 124

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 42  DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 101

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 102 ADKYGVRITDIITSSERM 119


>gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 137

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 SDKYGVRITDIITPSERM 132


>gi|220934502|ref|YP_002513401.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995812|gb|ACL72414.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
          Length = 154

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   I   +  +++++ L  G V+           +  NG  I   E+  V +
Sbjct: 75  VLDIPVTISMEIGRTRMPIRNLLQLNQGSVVELDRLAGEPLDVYVNGTLIAHGEVVVVNE 134

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 135 KFGIRLTDVISPTERVKK 152


>gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
 gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
          Length = 136

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K +++L  G V+           +  NG  I   E+  V
Sbjct: 54  NLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 113

Query: 293 GKNYTIRITDRINFDQKS 310
              Y IRITD I   ++ 
Sbjct: 114 SDKYGIRITDIITPSERM 131


>gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
          Length = 504

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 279 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT------------- 210
              D + +              + +        + +  P                     
Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398

Query: 211 -----------LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                             +++  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 399 EATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 459 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 504


>gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
 gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
          Length = 138

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 56  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 116 SDKYGVRITDIITPSERM 133


>gi|290893997|ref|ZP_06556972.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|290556443|gb|EFD89982.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
          Length = 504

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 279 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 399 EATTPAEIIEPEKSAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 459 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 504


>gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
          Length = 504

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 279 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 399 EATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 459 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 504


>gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus nematophila ATCC 19061]
          Length = 135

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K ++ L  G V+           +  NG  I   E+  V
Sbjct: 53  DLIMDIPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 112

Query: 293 GKNYTIRITDRINFDQKS 310
              Y IRITD I   ++ 
Sbjct: 113 SDKYGIRITDIITPSERM 130


>gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8]
          Length = 154

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   + TLK V+ +  G +I           +  NGK I   E+  +
Sbjct: 72  ELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVI 131

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +RIT+ ++  ++ 
Sbjct: 132 DENFGVRITEIVSPKERL 149


>gi|47095266|ref|ZP_00232877.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|47016337|gb|EAL07259.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
          Length = 504

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 279 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 399 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 459 CEKDVIILKESMNEPLVLALNGVMIGKGILVRVDDHFGIQMTELVR 504


>gi|293605020|ref|ZP_06687415.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
           ATCC 43553]
 gi|292816589|gb|EFF75675.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
           ATCC 43553]
          Length = 101

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 17  DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 76

Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
              Y IR+TD I   ++ +    ++R
Sbjct: 77  EDKYGIRLTDIITPSER-INRLNNRR 101


>gi|254830309|ref|ZP_05234964.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
          Length = 515

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGMVQNDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515


>gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y4.1MC1]
 gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y4.1MC1]
          Length = 395

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K ++++++ L  G +I           +  N K I   E+  + +
Sbjct: 316 LLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE 375

Query: 295 NYTIRITDRINFDQKSLK 312
           N+ +R+TD I+   +  K
Sbjct: 376 NFGVRVTDIISQSDRLKK 393



 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 57/194 (29%), Gaps = 2/194 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V+I+  S    +  ++   F              
Sbjct: 37  QDALGEIGNISFGSSATALSVLLNQKVEITTPSVSIIQRKNVDSEFPLPYVAIQVNYTDG 96

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + +LG               +  ++   + +   +  ++   
Sbjct: 97  FLGTNLLVIKQEDAAIIADLMLGGDGTNTADELGEIQLSAVQEAMNQMMGSAATSMSTIF 156

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
               + SP      ++   K      + +    ++  + I + + S+ + ++P +   + 
Sbjct: 157 GKRVDISPPTLHLLNVREEKGIEYLPNEDVFIKVSFRLKIGDLIDSNIMQLLPVDFAKEL 216

Query: 210 TLISLSSQNKSENQ 223
               L S  +S  +
Sbjct: 217 VKQLLHSSGESSGE 230


>gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
 gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
          Length = 136

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 54  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 113

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 114 ADKYGVRITDIITPSERM 131


>gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
 gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
          Length = 514

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/285 (9%), Positives = 83/285 (29%), Gaps = 27/285 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLAIQAKEVAEK 409

Query: 223 ----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
                                 + ++ +    +    + V ++      K  L+  ++  
Sbjct: 410 ATPPAEIIEPEKPAEPVQPIVVEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWC 469

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
              VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 EKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 514


>gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp.
           MED105]
 gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp.
           MED105]
          Length = 149

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K ++ L  G VI           +  NG  I   E+  V
Sbjct: 67  DMILDIPVQLTVELGRTKIPIKHILQLAQGSVIELDGLAGEPMDVLVNGYLIAQGEVVVV 126

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 127 NDKFGIRLTDIITPSERLRK 146


>gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 124

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 42  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 101

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 102 ADKYGVRITDIITPSERM 119


>gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes
           Clip81459]
 gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
 gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816]
          Length = 515

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT------------- 210
              D + +              + +        + +  P                     
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409

Query: 211 -----------LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                             +++  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 410 EATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515


>gi|254900064|ref|ZP_05259988.1| flagellar motor switch protein [Listeria monocytogenes J0161]
 gi|254911383|ref|ZP_05261395.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
 gi|254935710|ref|ZP_05267407.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|258608293|gb|EEW20901.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|293589320|gb|EFF97654.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
          Length = 515

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVMIGKGILVRVDDHFGIQMTELVR 515


>gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99]
 gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220]
 gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 515

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 410 EATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515


>gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
 gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
          Length = 153

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   +  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 69  NLILDIPVQLTVELGRTRIPIKNILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 128

Query: 293 GKNYTIRITDRINFDQKS 310
              + IR+TD +   ++ 
Sbjct: 129 NDKFGIRLTDIVTPSERM 146


>gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 156

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 35/91 (38%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
              Q ++  D        + V +   +   +  +++++ L  G V+           +  
Sbjct: 62  QAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 121

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           NG  I   E+  +   + IR+TD ++  ++ 
Sbjct: 122 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 152


>gi|292493589|ref|YP_003529028.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
 gi|291582184|gb|ADE16641.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
          Length = 152

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   I   + +++D++ L  G V+           +  NG  I   E+  V
Sbjct: 71  DLILDIPVTMAMEIGRTRISIRDLLKLNRGSVVELERLAGEPLDVLVNGCLIAHGEVVVV 130

Query: 293 GKNYTIRITDRINFDQKSLK 312
            + + IR+TD I+  ++  K
Sbjct: 131 NEKFGIRLTDVISTTERVRK 150


>gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
           12168]
 gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
           12168]
          Length = 396

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  +K+++ +  G +I           +  N K I   E+  + +
Sbjct: 319 IMDVYMEMTVELGRTKKQIKEILGMGEGTIIELDKLAGEPVDILVNHKPIAKGEVVVIDE 378

Query: 295 NYTIRITDRINFDQKS 310
           N+ +R+T+ ++  ++ 
Sbjct: 379 NFGVRVTEILSPIERV 394


>gi|153840527|ref|ZP_01993194.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ3810]
 gi|149745811|gb|EDM56941.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ3810]
          Length = 168

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 10/100 (10%), Positives = 23/100 (23%), Gaps = 6/100 (6%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
                  R+                +   + + +       +    ++S    Q  KF  
Sbjct: 37  FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112
             ++       +            I     LV  L++  L
Sbjct: 91  YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVDKFL 130


>gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 126

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 35/73 (47%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   + +L++++ +  G V+           L  NG+ +   E+  +G+
Sbjct: 49  LADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGE 108

Query: 295 NYTIRITDRINFD 307
           NY IRIT+ IN +
Sbjct: 109 NYGIRITELINPE 121


>gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
 gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
          Length = 138

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 56  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 116 SDKYGVRITDIITPSERM 133


>gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
          Length = 515

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515


>gi|269836615|ref|YP_003318843.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
           20745]
 gi|269785878|gb|ACZ38021.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
           20745]
          Length = 144

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 30/76 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +K ++ L+ G V+           +  N   I   E+  V +
Sbjct: 66  LRDVEVELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDE 125

Query: 295 NYTIRITDRINFDQKS 310
            + +R+ + +  +++ 
Sbjct: 126 KFAVRVVEIVPPERRL 141


>gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
 gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
 gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28]
 gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e]
 gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
          Length = 515

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +    + V ++      K  L+  ++ 
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515


>gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320]
 gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
 gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320]
 gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
          Length = 136

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K +++L  G V+           +  NG  I   E+  V
Sbjct: 54  NLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 113

Query: 293 GKNYTIRITDRINFDQKS 310
              Y IRITD I   ++ 
Sbjct: 114 SDKYGIRITDIITPSERM 131


>gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
           30120]
 gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
           30120]
          Length = 138

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K +++L  G V+           +  NG  I   E+  V
Sbjct: 56  DMIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
             NY IRITD I   ++ 
Sbjct: 116 SDNYGIRITDIITPSERM 133


>gi|218887303|ref|YP_002436624.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758257|gb|ACL09156.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 180

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 37/93 (39%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            ++++   D           + +++   +   +  + +++ L  G V+           +
Sbjct: 84  EEAKSPRPDSGRRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEV 143

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             NGK +   E   + + + +R+TD I+  ++ 
Sbjct: 144 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 176


>gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
 gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
          Length = 124

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 42  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 101

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 102 ADKYGVRITDIITPSERM 119


>gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
 gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
 gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1]
          Length = 404

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/291 (9%), Positives = 84/291 (28%), Gaps = 40/291 (13%)

Query: 35  SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
            S++     + +          ++  +DIS    +      + ++  E            
Sbjct: 129 LSAISEAMNQMMGSSATSLSSMLNRTIDISPPIAEVV---DLKNTLNEG----------- 174

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
                    + L    ++       E    + +  +        K     +S  +     
Sbjct: 175 ------EIDSFLSEEFVKISF--HMEIGDLVDSEIMQLYPPAFVKEMCKGVSQNMELDTQ 226

Query: 152 TTQESSPNLEDFYD-------------IDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
           +  E  P   +                ++    N+  + NE +   NMN           
Sbjct: 227 SVTEDVPQSSNTATQAAPIQQPQDSGSMNNASANSQGMINENMMNSNMNSQNMMNQGMMN 286

Query: 199 LIIPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
             +  + ++  +  + +          ++            + + +   +   K ++ ++
Sbjct: 287 QNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVELGRTKKSISEI 346

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +    G++I           +  NGK +   E+  + +++ +RIT+ +N  
Sbjct: 347 LDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNSK 397


>gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
           11-1]
          Length = 109

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G VI           +  NG  I   E+  +  
Sbjct: 30  ILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIELERGAGEPLDVYVNGTLIAHGEVVVIND 89

Query: 295 NYTIRITDRINFDQKS 310
            + +R+TD ++  ++ 
Sbjct: 90  RFGVRLTDVVSPSERI 105


>gi|315648126|ref|ZP_07901227.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus vortex V453]
 gi|315276772|gb|EFU40115.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus vortex V453]
          Length = 419

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 33/80 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   +  +KD++ +  G +I           +  N K I   E+  +
Sbjct: 338 NLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVI 397

Query: 293 GKNYTIRITDRINFDQKSLK 312
            +N+ +R+TD ++   +  K
Sbjct: 398 DENFGVRVTDIVSQWDRIQK 417



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 61/210 (29%), Gaps = 2/210 (0%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            +   VDI+       K S     F +         +  
Sbjct: 42  QDALGEIGNITFGSAATALSTLLGKKVDITTPKVSIIKRSQFEEEFPKPHVAVHVTYVDG 101

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + +LG     + +  N    +  ++   + +   +  ++   
Sbjct: 102 FEGINSLVIKTRDAQVIADLMLGGEGNPVEEELNEIHISAVQEAMNQMMGSSATSMSTIF 161

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +     SP   D  D+   +   N   +E +  I+  + I   + S+ + ++P       
Sbjct: 162 NRFVNISPPGIDILDMANGEGVNNLPQDETLIKISFRLIIGELIDSTIMQLLPVHFSKDM 221

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLN 239
             + ++   + +   ++             
Sbjct: 222 VHMLINGTEEPQPAKQEAAPTVEAPVNTQE 251


>gi|238025699|ref|YP_002909930.1| flagellar motor switch protein FliN [Burkholderia glumae BGR1]
 gi|237874893|gb|ACR27226.1| Flagellar motor switch protein FliN [Burkholderia glumae BGR1]
          Length = 144

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 62  DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 121

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 122 NDKFGIRLTDIITPSERIRK 141


>gi|149908776|ref|ZP_01897436.1| hypothetical protein PE36_21284 [Moritella sp. PE36]
 gi|149808050|gb|EDM67991.1| hypothetical protein PE36_21284 [Moritella sp. PE36]
          Length = 306

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 88/288 (30%), Gaps = 26/288 (9%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYK---KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
                LG+++        +        + + +   +  +   +  Y           ++ 
Sbjct: 39  EKYDLLGERRQWTDCLEVINSDLSLAHREIERRLSQLFN---EYEYRITLQKFTHERVNP 95

Query: 77  FKENFVFSQASLSSWSS-NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
                        +       +  +N ++ TL E  LGA+ +   +      S  E +L 
Sbjct: 96  VDLGTNIIWLQAQNNVGLKVLLSINNAMLYTLTEIFLGAT-KPSNKDNLAQPSDSEYRLL 154

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           KR +      L+  +S   E +              N   + +EF  +  ++ TI+   S
Sbjct: 155 KRILTIQLDALDNQLSHHHEWT----------ISHTNQPTIGDEF-ISSTIDCTIKEYLS 203

Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
           S+ +  P+E + +T   + +  +     ++            +  NI+  +   +  L  
Sbjct: 204 SWRIWYPKEFINQTLSSNRTKPDYELLAAKLANAA-----TNIPTNINVILAKTQLNLVQ 258

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +  LK G  I                  I    +        +++TD 
Sbjct: 259 LTQLKSGDFIMMDLP--EIVSACTGNHVIAHGRVVVQSGRLVMQVTDT 304


>gi|330814982|ref|YP_004358687.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
 gi|327367375|gb|AEA58731.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
          Length = 149

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 67  DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 126

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 127 NDKFGIRLTDIITPSERIRK 146


>gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
           DSM 13965]
          Length = 132

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 35/78 (44%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   + T+++++ +  G V+           L  NG+ I   E+  +
Sbjct: 51  DLLLDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVI 110

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ IRITD ++  ++ 
Sbjct: 111 DENFGIRITDIVSPGERL 128


>gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 384

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 34/76 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + ++ +V++   G VI           +  NGK I   E+  + +
Sbjct: 304 IADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDE 363

Query: 295 NYTIRITDRINFDQKS 310
           N+ +R+T+ +N  +K 
Sbjct: 364 NFGVRVTEILNVGEKI 379


>gi|54308124|ref|YP_129144.1| flagellar motor switch protein [Photobacterium profundum SS9]
 gi|46912550|emb|CAG19342.1| putative polar flagellar switch protein FliN [Photobacterium
           profundum SS9]
          Length = 129

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                ++S   S+D           + V I   +   + ++++++ L  G V+       
Sbjct: 29  LEELVDESTPISDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 88  EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127


>gi|313610118|gb|EFR85441.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
          Length = 515

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 84/286 (29%), Gaps = 28/286 (9%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +   ++ V ++      K  L+  ++ 
Sbjct: 410 ETTTPAEIIEPEKPAESVHQAVIEEKETLSEMEQILEEIPVTLEVVFGTAKVKLEKFISW 469

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               VI          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515


>gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 127

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 2/124 (1%)

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
            + N + S    +           + +   +         +        + V +   +  
Sbjct: 3   DMNNSSGSEDKSMDNLWGEALNEQNAAGSTEQTAV-PQFSEEM-NLILDIPVKMTVELGR 60

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            K T+K+++ L  G V+           +  NG  I   E+  V   + IRITD I   +
Sbjct: 61  TKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSDKFGIRITDIITPSE 120

Query: 309 KSLK 312
           +  +
Sbjct: 121 RMHR 124


>gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
           5521]
 gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
           5521]
 gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 412

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 38/78 (48%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + ++I   +   K +++D++ L  G +I      +    +  NGK+I   E+  V
Sbjct: 331 DLIMDVPLDISVVLGRTKKSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALGEVVVV 390

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +RIT+ ++  ++ 
Sbjct: 391 DENFGVRITNIVSNVERL 408



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 75/248 (30%), Gaps = 5/248 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G+S+      +       +   + +  T + +   +G +          + ++  V+I
Sbjct: 15  LSGESMDSEDRNVSSSSNENMEDAITE--TDKDLLGEIGNISMGSASTALYQLINQQVNI 72

Query: 61  SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +           I   F+    V     ++       +       + +   ++G   +  
Sbjct: 73  TTPVVSVTTLKEIKEGFETPNIVLDIEYIAGIVGRNILIIKTYDGLVISNLMMGGDGKIT 132

Query: 120 PQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
                  L  +   +   + I   +  +        + SP        +    + +   +
Sbjct: 133 DVHELSELEISAVSEAMNQMIGSAATSMATMFGRKVDISPPTSRVVTDEGTPISESIPED 192

Query: 179 EFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
           + +  ++  MTI + V S+ + I P +T      I        +N+  +L +   +    
Sbjct: 193 QPIVKVSFKMTIGDIVDSNIMQIFPIKTAKNIVAIMTGEDVADDNKVGELEEQKDKLIVN 252

Query: 238 LNVNIDTR 245
             ++    
Sbjct: 253 KEIHTQPE 260


>gi|212637765|ref|YP_002314290.1| hypothetical protein swp_5088 [Shewanella piezotolerans WP3]
 gi|212559249|gb|ACJ31703.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 308

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 85/309 (27%), Gaps = 28/309 (9%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +  QS +    P+   LL     +      +      +     + L  I ++       +
Sbjct: 24  LVKQSNNVEVRPV--ALLKEKLARSRLLIQLTHCQRPMMDAVNELLNPIIRQGHHALSQV 81

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
                 S K   I       +                      +  L     G S  +  
Sbjct: 82  ----VMSAKSDAITPELHHAWFLLSYQRIELGWW---KIDKCTLDQLASGYYG-SFTSAA 133

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +   R+ S  E +L KR +      L           P  +   D   L+  TN    + 
Sbjct: 134 KSPLRAPSQSEFRLVKRLMLAAINTL-----------PVADIDTDELELELITNTTPIKA 182

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
                +N  I ++       + +  L       ++ Q        DL D  A+   QL  
Sbjct: 183 PVCCELNFPIAHIGPGIRFYMAEYLL-----GLMAEQPSQYQADPDLNDKLAKSLKQLPF 237

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +  +   +  +  LK+G ++P     +         + I+   +         ++
Sbjct: 238 RVMLELGQQSIPVTGLQQLKVGDILPMNLHSRCPVT--VGKRPIFYATVHAHEGQMVAKL 295

Query: 301 TDRINFDQK 309
           T      ++
Sbjct: 296 TQEAFQTEE 304


>gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629]
          Length = 404

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/291 (9%), Positives = 84/291 (28%), Gaps = 40/291 (13%)

Query: 35  SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
            S++     + +          ++  +DIS    +      + ++  E            
Sbjct: 129 LSAISEAMNQMMGSSATSLSSMLNRTIDISPPIAEVV---DLKNTLNEG----------- 174

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
                    + L    ++       E    + +  +        K     +S  +     
Sbjct: 175 ------EIDSFLSEEFVKISF--HMEIGELVDSEIMQLYPPAFVKEMCKGVSQNMELDTQ 226

Query: 152 TTQESSPNLEDFYD-------------IDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
           +  E  P   +                ++    N+  + NE +   NMN           
Sbjct: 227 SVTEDVPQSSNTATQAAPIQQPQDSGSMNNASANSQGMINENMMNSNMNSQNMMNQGMMN 286

Query: 199 LIIPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
             +  + ++  +  + +          ++            + + +   +   K ++ ++
Sbjct: 287 QNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVELGRTKKSISEI 346

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +    G++I           +  NGK +   E+  + +++ +RIT+ +N  
Sbjct: 347 LDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNSK 397


>gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Thermomicrobium
           roseum DSM 5159]
 gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Thermomicrobium
           roseum DSM 5159]
          Length = 128

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 34/79 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +K ++ L+ G V+           L+ N   I   E+  V +
Sbjct: 47  LRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDE 106

Query: 295 NYTIRITDRINFDQKSLKN 313
            + +RIT+ ++ +++  + 
Sbjct: 107 KFAVRITEIVSPEKRLAEG 125


>gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046]
 gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046]
          Length = 137

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 400

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 35/78 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +N+   +   + T+K+++ L  G ++           +  NGK I   E+  + +
Sbjct: 321 IMDVPLNVSVELGRTRKTIKEILDLGPGSIVQLEKLAGEPVDILVNGKLIAKGEVVVIDE 380

Query: 295 NYTIRITDRINFDQKSLK 312
           NY +R+T  I+   +  K
Sbjct: 381 NYGVRVTAIISPMDRVSK 398


>gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Paris]
 gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
           Paris]
          Length = 111

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
             +      +Q    N               + V++   I   K T+++++ L  G ++ 
Sbjct: 6   ETSAEQLNQNQGNPLNPDSGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVA 63

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                     +  NG  +   E+  V   + +R+TD ++  ++ 
Sbjct: 64  LDRLAGDPLDVLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 107


>gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
 gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
          Length = 420

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 56/198 (28%), Gaps = 18/198 (9%)

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           ++  + +      +  L   +        +      I  +  N        V +    M 
Sbjct: 220 IDSNIMQLVTVTFAKRLVDDLMNPAPIDGDFLGEEVIPEMPANEPPAEKSEVHSRRSEMP 279

Query: 190 IENVASSFVLIIPQETLLKTTLI--SLSSQNKSENQS---------------EDLIDPFA 232
             + +        Q    +T       S  +                            +
Sbjct: 280 QNDRSHHVDQSFEQPIHERTREQQHIGSGMHGGREVDVQPAAFSHFEPQPLSNHESKNLS 339

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   K ++K+++ L  G +I           +  N K I   E+  +
Sbjct: 340 M-LLDIPLQVTVELGRTKRSIKEILELGQGSIIELDKLAGEPVDILVNQKLIAKGEVVVI 398

Query: 293 GKNYTIRITDRINFDQKS 310
            +++ +R+TD ++ + + 
Sbjct: 399 EESFGVRVTDIVSQEDRI 416



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/167 (8%), Positives = 49/167 (29%), Gaps = 1/167 (0%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
               +     +G +            ++  V+I+  +    +   +   F +        
Sbjct: 53  SDIEQDALGEIGNISFGSAATALSTLLNQKVEITTPTLSLVESKELPAEFPQPHVAVHVE 112

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
               +     +         + + +LG          +    +  ++   + +   S  +
Sbjct: 113 YTEGFEGMNLLVIKTGDAAIIADLMLGGDGTNPASDLSDMHVSAVQEAMNQMMGSASTSM 172

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
           +   +   + SP   D  D+ +    +N   ++ +  I+  + I  +
Sbjct: 173 STVFNKRVDISPPGIDLMDLKHNVGTSNVPEDQILVKISFRLKIGEL 219


>gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661]
 gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661]
          Length = 133

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 51  DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLEGLAGEPLDILINGYLIAQGEVVVV 110

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 111 ADKYGVRITDIITPTERM 128


>gi|134095085|ref|YP_001100160.1| motor switch protein [Herminiimonas arsenicoxydans]
 gi|55977143|gb|AAV68364.1| FliN [Herminiimonas arsenicoxydans]
 gi|133738988|emb|CAL62036.1| Flagellar motor switch protein FliN [Herminiimonas arsenicoxydans]
          Length = 141

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 61  ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 120

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I   ++  K
Sbjct: 121 KFGIRLTDIITPSERIRK 138


>gi|329929333|ref|ZP_08283086.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
 gi|328936702|gb|EGG33145.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
          Length = 420

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 33/80 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   +  +KD++ +  G +I           +  N K I   E+  +
Sbjct: 339 NLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVI 398

Query: 293 GKNYTIRITDRINFDQKSLK 312
            +N+ +R+TD ++   +  K
Sbjct: 399 DENFGVRVTDIVSQWDRIQK 418



 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/196 (9%), Positives = 60/196 (30%), Gaps = 2/196 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            +   VDI+       K S     F +         +  
Sbjct: 42  QDALGEIGNITFGSAATALSTLLGKKVDITTPRVSIIKRSEFEEEFPKPHVAVHVKYVDG 101

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + +LG     + +  N    +  ++   + +   +  ++   
Sbjct: 102 FEGINSLVIKTRDAQVIADLMLGGEGNPVEEELNEIHISAVQEAMNQMMGSSATSMSTIF 161

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +     SP   D  ++   +   N   +E +  I+  + I   + S+ + ++P       
Sbjct: 162 NRFVNISPPGIDILNMANGEGVNNLPPDETLIKISFRLIIGELIDSTIMQLLPVHFSKDM 221

Query: 210 TLISLSSQNKSENQSE 225
             + ++   + +   +
Sbjct: 222 VHMLINGTEEPQPAKQ 237


>gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. JDR-2]
 gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. JDR-2]
          Length = 421

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 33/80 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   +  +KD++ L  G +I           +  N K I   E+  +
Sbjct: 340 NLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVI 399

Query: 293 GKNYTIRITDRINFDQKSLK 312
            +N+ +R+TD ++   +  K
Sbjct: 400 DENFGVRVTDIVSQWDRIQK 419



 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 60/191 (31%), Gaps = 2/191 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            +   VDI+       K   + + F +     S   +  
Sbjct: 44  QDALGEIGNITFGSAATALSTLLGKKVDITTPQVTFIKREDLANEFPKPHVAVSVQYVDG 103

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + +LG   +   Q  N    +  ++   + +   +  ++   
Sbjct: 104 FQGINSLVIKTKDAQVIADLMLGGEGDVTLQELNEIHISAVQEAMNQMMGSSATSMSTIF 163

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +     SP   D  D+D         + +    I+  +TI + + S+ + ++P     + 
Sbjct: 164 NRFVNISPPGIDILDVDSGGGMGQLPTEDVFIKISFRLTIGDLIDSTIMQLLPVPFAKQM 223

Query: 210 TLISLSSQNKS 220
             I +    + 
Sbjct: 224 VAILMGDVEEE 234


>gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 2360]
 gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 2360]
 gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 1313]
          Length = 406

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 82/303 (27%), Gaps = 25/303 (8%)

Query: 21  LTGKLGDKKTIEKI---SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII 74
           + G  G  K  E      S++     + +           +  +DIS            +
Sbjct: 116 MMGGDGSNKEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKAFPMTLDAAV 175

Query: 75  HSFKEN-------FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
              +           F         S        +    ++ N++ +  E    +   + 
Sbjct: 176 PEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEEVAA 235

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S V++ +A +   Q            Q      +  Y   Y +    +    +       
Sbjct: 236 SAVQEPVAGQHNEQYYHAQPSQQPYQQPPQQPYQQPYQQPYHQPYQQQYQQYYQPYEQPP 295

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
              +   +   +                 +   +     +          + + +   + 
Sbjct: 296 RQNDGYRNPINV------------QPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELG 343

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                +KD++    G +I           +  NGK I   E+  + +++ +RITD ++  
Sbjct: 344 RTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPS 403

Query: 308 QKS 310
           ++ 
Sbjct: 404 KRL 406



 Score = 60.4 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/228 (8%), Positives = 59/228 (25%), Gaps = 11/228 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G S   N            +               +G +            +   V I
Sbjct: 14  LNGSSSEGN---------EENSANEELTSQEIDALGEIGNISMGTSATTLNSLLGQRVVI 64

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +        +  +   +  ++V  +            +    +    + + ++G      
Sbjct: 65  TTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKEDDAKVITDLMMGGDGSNK 124

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                    +   +   + I   +  ++   +   + SP       +D           +
Sbjct: 125 EGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKAFPMTLDAAVPEAEFPRGD 184

Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
            +  +   M I   + S  + ++P +   K     ++S+ +     E+
Sbjct: 185 KIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEE 232


>gi|94314218|ref|YP_587427.1| flagellar motor switch FliN [Cupriavidus metallidurans CH34]
 gi|93358070|gb|ABF12158.1| Flagellar motor switch FliN [Cupriavidus metallidurans CH34]
          Length = 156

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 76  ILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVND 135

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I   ++  K
Sbjct: 136 KFGIRLTDIITPSERIRK 153


>gi|261407971|ref|YP_003244212.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. Y412MC10]
 gi|261284434|gb|ACX66405.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. Y412MC10]
          Length = 420

 Score = 78.9 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 33/80 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   +  +KD++ +  G +I           +  N K I   E+  +
Sbjct: 339 NLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVI 398

Query: 293 GKNYTIRITDRINFDQKSLK 312
            +N+ +R+TD ++   +  K
Sbjct: 399 DENFGVRVTDIVSQWDRIQK 418



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/196 (9%), Positives = 60/196 (30%), Gaps = 2/196 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            +   VDI+       K S     F +         +  
Sbjct: 42  QDALGEIGNITFGSAATALSTLLGKKVDITTPRVSIIKRSEFEEEFPKPHVAVHVKYVDG 101

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + +LG     + +  N    +  ++   + +   +  ++   
Sbjct: 102 FEGINSLVIKTRDAQVIADLMLGGEGNPMEEELNEIHISAVQEAMNQMMGSSATSMSTIF 161

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +     SP   D  ++   +   N   +E +  I+  + I   + S+ + ++P       
Sbjct: 162 NRFVNISPPGIDILNMANGEGVNNLPPDETLIKISFRLIIGELIDSTIMQLLPVHFSKDM 221

Query: 210 TLISLSSQNKSENQSE 225
             + ++   + +   +
Sbjct: 222 VHMLINGTEEPQPAKQ 237


>gi|27904579|ref|NP_777705.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46395831|sp|Q89AZ4|FLIM_BUCBP RecName: Full=Flagellar motor switch protein FliM
 gi|27903976|gb|AAO26810.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 331

 Score = 78.9 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 85/273 (31%), Gaps = 13/273 (4%)

Query: 35  SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94
             ++   + K   K   E  D+D  IS+      KF +I  + K N +     +S +   
Sbjct: 44  LENMHECFLKQFTKHISEYSDVDCKISFYKFIIQKFKNIKKNIKNNSISDCFEISPYKKL 103

Query: 95  FFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
             I  S+N+   L+E L G    +       + L+     + K+    I        +  
Sbjct: 104 GIIFVSDNISDYLIEYLFGGCELKNSSNGLFKKLTLSTINIVKKMFKIILEQYYFLWNKV 163

Query: 154 --QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL---LK 208
              +    L    +++ +       S +   T    + I N      + +P         
Sbjct: 164 SLCKMKLILNRLQNLNEISNVNFINSKDTFVTFLFRLRIANKFGMLGICLPTSLSFQCNN 223

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQL-----NVNIDTRINLKKTTLKDVVTLKIGQ 263
              ++        +    +     ++ +Q+      + +   +     TL  ++  K+G 
Sbjct: 224 EADVNSVHNVSHISYDNVVNTEIRKRLFQVIVYNCKIVLKIVLIENYITLSKIIAFKVGD 283

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++P    +    +  +    I   +       Y
Sbjct: 284 ILPIHMLDN--VVAYSENVPILIGKYKMFKNKY 314


>gi|317151985|ref|YP_004120033.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942236|gb|ADU61287.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 174

 Score = 78.9 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  + +++ L  G V+           +  NGK +   E   + +
Sbjct: 95  ILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE 154

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 155 KFGIRLTDIISPIERV 170


>gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
           35580]
 gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
           35580]
          Length = 382

 Score = 78.9 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   +  +K+++++  G +I           +  N K I   E+  + +
Sbjct: 304 IMDVFMEMTVELGRTRKMIKEILSMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVIDE 363

Query: 295 NYTIRITDRINFDQKSLK 312
           N+ +R+T+ ++  ++   
Sbjct: 364 NFGVRVTEILSPAERISD 381


>gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
           43243]
          Length = 197

 Score = 78.9 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 36/100 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              +   + Q  + + S             + + +   +     T+KD++    G +I  
Sbjct: 98  DVNVQPAAFQPFAGDLSALSQKENIDLIMDVPLEVTVELGRTSKTIKDILEFAPGTIIEL 157

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                    +  NGK +   E+  + +N+ +RIT+ I   
Sbjct: 158 NKIAGESVDVLVNGKNVAKGEVVVIEENFGVRITEIIKEQ 197


>gi|116872089|ref|YP_848870.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740967|emb|CAK20087.1| flagellar motor switch domain protein [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 512

 Score = 78.9 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/283 (9%), Positives = 83/283 (29%), Gaps = 25/283 (8%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L+      +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAKEVAEK 409

Query: 223 --------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
                               + ++ +    +    + V ++      K  L+  ++    
Sbjct: 410 EEATTLTAAVEPEKPVEPVVEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEK 469

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
            V+          +L+ NG  I    L RV  ++ I++T+ + 
Sbjct: 470 DVVILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 512


>gi|220903654|ref|YP_002478966.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867953|gb|ACL48288.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 190

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   +   +  + +++ L  G V+           +  NGK +   E   + +
Sbjct: 111 ILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVVINE 170

Query: 295 NYTIRITDRINFDQKS 310
            + +R+TD I+  ++ 
Sbjct: 171 KFGVRLTDIISPIERV 186


>gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
           WPP163]
 gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
           WPP163]
          Length = 137

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD +   ++ 
Sbjct: 115 SDKYGVRITDIMTPSERM 132


>gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica]
          Length = 144

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K ++ L  G V+           +  NG  I   E+  V
Sbjct: 62  DLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 121

Query: 293 GKNYTIRITDRINFDQKS 310
              Y IRITD I   ++ 
Sbjct: 122 SDKYGIRITDIITPSERM 139


>gi|323700137|ref|ZP_08112049.1| flagellar motor switch protein FliN [Desulfovibrio sp. ND132]
 gi|323460069|gb|EGB15934.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
           ND132]
          Length = 183

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  + +++ L  G V+           +  NGK +   E   + +
Sbjct: 104 ILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE 163

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 164 KFGIRLTDIISPIERV 179


>gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
 gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
          Length = 137

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 58  ILDIPVTLSMEVGSTNISIRNLLQLNQGSVIELDRLAGEPLDVMVNGTLIAHGEVVVVNE 117

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 118 KFGIRLTDVISPQERIKK 135


>gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 139

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K ++ L  G V+           +  NG  I   E+  V
Sbjct: 57  DLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 116

Query: 293 GKNYTIRITDRINFDQKS 310
              Y IRITD I   ++ 
Sbjct: 117 SDKYGIRITDIITPSERM 134


>gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2]
          Length = 151

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 72  ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 131

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 132 KFGIRLTDVISPSERIKK 149


>gi|53723901|ref|YP_104281.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           23344]
 gi|52427324|gb|AAU47917.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           23344]
          Length = 124

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 42  DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 101

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 102 NDKFGIRLTDIITPSERIRK 121


>gi|83949668|ref|ZP_00958401.1| hypothetical protein ISM_01200 [Roseovarius nubinhibens ISM]
 gi|83837567|gb|EAP76863.1| hypothetical protein ISM_01200 [Roseovarius nubinhibens ISM]
          Length = 339

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/297 (8%), Positives = 72/297 (24%), Gaps = 16/297 (5%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSL--GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
           +  +    +  +          + ++      +  L K     + L + +S         
Sbjct: 1   MDSVATDTVKHRKARAAREGFDARAMSPAKALRVGLGKAADGTLGLALSVSTVEQSRLSQ 60

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
             +        +              +      +  ++E            +  R L+  
Sbjct: 61  KDLPEVLAGTGLTCLVEDDRGR-RGAVRLDFPALSAVIEIQTIGRVAEREVVE-RPLTRT 118

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY--DIDYLKKNTNRLSNEFVTTINMNM 188
           +  L    +  +            +        +    +     +  L  +      + +
Sbjct: 119 DAALCAPLLDAVFEAFETGAEDLPDGQSWQGYRFGAMAEDAHSLSLALEADHYHLFRVGV 178

Query: 189 TIEN--VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
            +     A  + L++P          +     +   +  D     +       V +   +
Sbjct: 179 MLGEAKRAGVYELLLPVMD-------APQVSKEKPGRPRDEPRALSPVVMGAPVTLQAIL 231

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRITD 302
                 L+  ++LK G  +           L A  G  +    LG+V     IR+  
Sbjct: 232 ARHSIPLEKALSLKAGDQLIVPGSGAMALRLEAPGGHLVSDGRLGQVNGMRAIRLRK 288


>gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 145

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 63  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 122

Query: 293 GKNYTIRITDRINFDQKS 310
              + +RITD I   ++ 
Sbjct: 123 ADKFGVRITDIITPSERM 140


>gi|149908449|ref|ZP_01897112.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
 gi|149808612|gb|EDM68547.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
          Length = 127

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                N     S +           + V I   +   K ++++++ L  G V+       
Sbjct: 27  LEDFSNDDNAFSPEQQHKL-DSILDIPVVISMEVGRSKISIRNLLQLNQGSVVELDRIAG 85

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 86  EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125


>gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6]
          Length = 137

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 115 ADKYGVRITDIITPSERM 132


>gi|161523222|ref|YP_001578234.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
           17616]
 gi|189348921|ref|YP_001944549.1| flagellar motor switch protein [Burkholderia multivorans ATCC
           17616]
 gi|221214538|ref|ZP_03587508.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
 gi|160340651|gb|ABX13737.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
           17616]
 gi|189332943|dbj|BAG42013.1| flagellar motor switch protein [Burkholderia multivorans ATCC
           17616]
 gi|221165428|gb|EED97904.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
          Length = 159

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 77  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 136

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 137 NDKFGIRLTDIITPSERIRK 156


>gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName:
           Full=Flagellar motor switch protein MopA
          Length = 106

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 24  DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 83

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 84  SDKYGVRITDIITPSERM 101


>gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121]
 gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121]
          Length = 150

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 30/79 (37%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + V +   +      +++++ L  G V+           +  NG  I   E+  
Sbjct: 68  MDLIMDIPVTLSMELGSTSIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVV 127

Query: 292 VGKNYTIRITDRINFDQKS 310
           V   Y IR+TD ++  ++ 
Sbjct: 128 VNDKYGIRLTDVVSPSERI 146


>gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 127

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 32/81 (39%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + V +   +   K T+K+++ L  G V+           +  NG  I   E+  
Sbjct: 44  MNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVV 103

Query: 292 VGKNYTIRITDRINFDQKSLK 312
           V   + IRITD I   ++  +
Sbjct: 104 VSDKFGIRITDIITPSERMHR 124


>gi|256830497|ref|YP_003159225.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
           4028]
 gi|256579673|gb|ACU90809.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
           4028]
          Length = 188

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +  ++   K  + +++ L  G VI           +  NGK +   E   + +
Sbjct: 109 ILDIPLEVSAQLGSTKLLINELLQLGQGSVIELNKLAGEPLEILVNGKLVARGEAVVINE 168

Query: 295 NYTIRITDRINFDQKS 310
            + +R+TD I+  ++ 
Sbjct: 169 KFGVRLTDIISPIERV 184


>gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Halanaerobium praevalens DSM 2228]
          Length = 417

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 33/81 (40%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + + +  R+      ++D++ L  G +I           L  NGK +   E+  
Sbjct: 336 MELIKDVPLEVTVRLGKTVMKIRDILDLGDGSIIELDKLAGEPVDLLVNGKLVAKGEVVV 395

Query: 292 VGKNYTIRITDRINFDQKSLK 312
           + +N+  R+ D I+  ++  K
Sbjct: 396 IDENFGFRVKDIISPAERLSK 416



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/172 (7%), Positives = 46/172 (26%), Gaps = 9/172 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS- 87
                +   +  +            +D  V+I+    +   F  +I  + +  V  +   
Sbjct: 45  SEEIDVIGEVNNIAMGSSATALSTLLDEKVEITTPEVEVQTFKQLIEEYDKPCVLVKVEY 104

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +        +         + + ++G     +  +    L+ +        + Q+    +
Sbjct: 105 VEGIEGLSLLVIDTKDAAVIADLMMGGDG--LEGMDQEMLNEISISAVGEAMNQMMGAAS 162

Query: 148 QCISTTQESSPNLEDFYDI------DYLKKNTNRLSNEFVTTINMNMTIENV 193
             +S   +   N+               +        E +   +  + + +V
Sbjct: 163 TAMSNILDVLVNISPPTAEFIDLDDVIEEGRDWFDPAEEIVVTSFKLKVGDV 214


>gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum JW20]
 gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum JW20]
          Length = 398

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 77/303 (25%), Gaps = 33/303 (10%)

Query: 21  LTGKLGDKKTIEKI---SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII 74
           + G  G  K  E      S++     + +           +  +DIS            +
Sbjct: 116 MMGGDGSNKEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAV 175

Query: 75  HSFKEN-------FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
              +           F         S        +    ++ N++ +  E    +   + 
Sbjct: 176 PEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEEVAA 235

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S V++ +A +   Q                P  + +    +                   
Sbjct: 236 SAVQEPVAGQHNEQYYHA-------QPSQQPYQQPYQQPYHQPYQQQYQQYYQPYEQPPR 288

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
                                  +     +   +     +          + + +   + 
Sbjct: 289 QNDGYR-------------NPINVQPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELG 335

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                +KD++    G +I           +  NGK I   E+  + +++ +RITD ++  
Sbjct: 336 RTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPS 395

Query: 308 QKS 310
           ++ 
Sbjct: 396 KRL 398



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/228 (8%), Positives = 59/228 (25%), Gaps = 11/228 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G S   N            +               +G +            +   V I
Sbjct: 14  LNGSSSEGN---------EENSANEELTSQEIDALGEIGNISMGTSATTLNSLLGQRVVI 64

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +        +  +   +  ++V  +            +    +    + + ++G      
Sbjct: 65  TTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKEDDAKVITDLMMGGDGSNK 124

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                    +   +   + I   +  ++   +   + SP       +D           +
Sbjct: 125 EGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAVPEAEFPRGD 184

Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
            +  +   M I   + S  + ++P +   K     ++S+ +     E+
Sbjct: 185 KIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEE 232


>gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
 gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
          Length = 518

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 85/283 (30%), Gaps = 32/283 (11%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V ++  + Q           +   + +         S+     S    +
Sbjct: 238 STVLSKLLNRKVTLAIPTAQVIDSKEF-DYPERPCIVTTVEFVEGLKSSNTFIISKQAAL 296

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS----AVLNQCISTTQESSPNL- 160
            +   +LG + E      +  L+ +E    +  + Q+       +++ +    + SP + 
Sbjct: 297 VMANLMLGGTGE---VDEDAELTELELSAMQEVMNQMMGYSATAMSEMLGKKIDISPPIV 353

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
           E     D + +              + +        + +  P+        + LS Q + 
Sbjct: 354 EVCNVGDAMIQKDIDGGKTVEVIFPLEVESLIKTPMYQIFNPELAKE-IAHMMLSVQEEV 412

Query: 221 ENQSEDLI---------------------DPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           + ++                                  + + ++      K  L D +T 
Sbjct: 413 QAETPVEEVVETPPAEPIQVEKATPQISTTETEAVIDSIPITLEVIFGTAKVKLADFITW 472

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
               ++      +    L ANG  I S  L RV  ++ I+IT+
Sbjct: 473 CEKDIVILKESYEQPLSLLANGIHIGSGTLVRVNDHFGIKITE 515


>gi|119899014|ref|YP_934227.1| flagellar motor switch FliN [Azoarcus sp. BH72]
 gi|119671427|emb|CAL95340.1| flagellar motor switch FliN [Azoarcus sp. BH72]
          Length = 159

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K ++++++ L  G V+           +  NG  I   E+  V
Sbjct: 77  DMILDIPVQLTVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQGEVVVV 136

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 137 NDKFGIRLTDIITPAERMRK 156


>gi|329901243|ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549175|gb|EGF33767.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 137

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 116

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 117 KFGIRLTDIISPAERIKK 134


>gi|303326579|ref|ZP_07357022.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
 gi|302864495|gb|EFL87426.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
          Length = 194

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
             + +   L          + +++   +   +  + +++ L  G V+           + 
Sbjct: 100 SRQPRDNKLKREL-DFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVY 158

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            NGK +   E   + + + +R+TD I+  ++ 
Sbjct: 159 VNGKLVARGEAVVINEKFGVRLTDIISPIERV 190


>gi|332533118|ref|ZP_08408987.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037400|gb|EGI73854.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 132

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 1/111 (0%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P ++            +     S D           + V I   +   K  +++++ L  
Sbjct: 21  PDDSGEAHVAELDELSDSKHEMSGDEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQ 79

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 80  GSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130


>gi|46578463|ref|YP_009271.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603953|ref|YP_968353.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
 gi|46447874|gb|AAS94530.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564182|gb|ABM29926.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
 gi|311232391|gb|ADP85245.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris RCH1]
          Length = 170

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 35/93 (37%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            +S     D           + +++   +   +  + +++ L  G V+           +
Sbjct: 74  EESRAPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEV 133

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             NGK +   E   + + + +R+TD I+  ++ 
Sbjct: 134 FVNGKLVARGEAVVINEKFGVRLTDIISPIERV 166


>gi|288942629|ref|YP_003444869.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
           180]
 gi|288898001|gb|ADC63837.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
           180]
          Length = 148

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   I   +  +++++ L  G V+           +  NG  I   E+  V +
Sbjct: 69  VLDVPVTISMEIGRTRIPIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVVVVNE 128

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 129 KFGIRLTDVISPSERVRK 146


>gi|85707184|ref|ZP_01038271.1| possible flagellar switch protein FliM [Roseovarius sp. 217]
 gi|85668343|gb|EAQ23217.1| possible flagellar switch protein FliM [Roseovarius sp. 217]
          Length = 342

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/261 (9%), Positives = 76/261 (29%), Gaps = 14/261 (5%)

Query: 45  FLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
            L ++      L + ++         + +     +  +      ++  +   +      +
Sbjct: 39  ALARVADSLFGLGITVATVEQMRLPLAEVAQHVSDEGLLVHLDGAA-GTRGALCLDPQFL 97

Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE--SSPNLED 162
             L+E     +         R+ +  +  +    I  + A  +  ++   E   +     
Sbjct: 98  AGLIEVQTTGAVR-PAVARPRAATRTDAAMVAPLIDAVMAEFDSQMTAEVEGYLARGFSF 156

Query: 163 FYDIDYLKKNTNR--LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
              ++ ++  +      +  +  + +++                 LL   +         
Sbjct: 157 GDLVEDMRALSLVLLAPDYDLLRLTVDLGPGAKTGHLD-------LLLPVVPLPVRAAPG 209

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSA 279
                D   P  +      V +D  +   +  L+DV   K G ++P          ++  
Sbjct: 210 VGALGDGSAPLDQVVRTAPVVLDAVMGRLRLPLRDVWAFKPGDLVPIPREALGETQLVGT 269

Query: 280 NGKEIYSCELGRVGKNYTIRI 300
            G  +   +LG++     +R+
Sbjct: 270 KGHIVAIAQLGQMNGWRALRL 290


>gi|73539703|ref|YP_300070.1| Type III secretion system outer membrane O protein [Ralstonia
           eutropha JMP134]
 gi|72123040|gb|AAZ65226.1| Type III secretion system outer membrane O protein [Ralstonia
           eutropha JMP134]
          Length = 142

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 60  EMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 119

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 120 NDKFGIRLTDIITPSERIRK 139


>gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
 gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
          Length = 137

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              + +RITD I   ++ 
Sbjct: 115 ADKFGVRITDIITPSERM 132


>gi|206561842|ref|YP_002232607.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           J2315]
 gi|198037884|emb|CAR53828.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           J2315]
          Length = 151

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 69  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 128

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 129 NDKFGIRLTDIITPAERIRK 148


>gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1]
 gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58]
 gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
 gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
 gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1]
 gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
 gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN
 gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1]
 gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
 gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
 gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58]
 gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
          Length = 157

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 78  ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 138 KFGIRLTDVISPSERIKK 155


>gi|167585019|ref|ZP_02377407.1| flagellar motor switch protein FliN [Burkholderia ubonensis Bu]
          Length = 163

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 81  DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 140

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 141 NDKFGIRLTDIITPSERIRK 160


>gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7]
 gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7]
          Length = 157

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 78  ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 138 KFGIRLTDVISPSERIKK 155


>gi|167560938|ref|ZP_02353854.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
           EO147]
 gi|167568198|ref|ZP_02361072.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
           C6786]
          Length = 162

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 80  DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 139

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 140 NDKFGIRLTDIITPSERIRK 159


>gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
 gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
          Length = 138

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 56  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 115

Query: 293 GKNYTIRITDRINFDQKS 310
              + +RITD I   ++ 
Sbjct: 116 ADKFGVRITDIITPSERM 133


>gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa]
          Length = 157

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 78  ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 138 KFGIRLTDVISPSERIKK 155


>gi|237653570|ref|YP_002889884.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
 gi|237624817|gb|ACR01507.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
          Length = 155

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V I   +   K ++++++ L  G V+           +  NG  I   E+  V
Sbjct: 73  DMILDIPVQITVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQGEVVVV 132

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 133 NDKFGIRLTDIITPAERMRK 152


>gi|221201777|ref|ZP_03574814.1| flagellar motor switch protein FliN [Burkholderia multivorans
           CGD2M]
 gi|221207718|ref|ZP_03580726.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
 gi|221172564|gb|EEE05003.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
 gi|221178197|gb|EEE10607.1| flagellar motor switch protein FliN [Burkholderia multivorans
           CGD2M]
          Length = 159

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 77  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 136

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 137 NDKFGIRLTDIITPSERIRK 156


>gi|77165629|ref|YP_344154.1| surface presentation of antigens (SPOA) protein [Nitrosococcus
           oceani ATCC 19707]
 gi|254434523|ref|ZP_05048031.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
 gi|76883943|gb|ABA58624.1| Surface presentation of antigens (SPOA) protein [Nitrosococcus
           oceani ATCC 19707]
 gi|207090856|gb|EDZ68127.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
          Length = 143

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   I   + ++++++ L  G V+           +  NG  I   EL  V
Sbjct: 62  ELILDIPVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVV 121

Query: 293 GKNYTIRITDRINFDQKS 310
            + + IR+TD I+  ++ 
Sbjct: 122 NEKFGIRLTDVISASERV 139


>gi|116694516|ref|YP_728727.1| flagellar motor switch protein/type III secretory pathway protein
           [Ralstonia eutropha H16]
 gi|113529015|emb|CAJ95362.1| flagellar motor switch protein/type III secretory pathway protein
           [Ralstonia eutropha H16]
          Length = 149

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 67  EMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 126

Query: 293 GKNYTIRITDRINFDQKS 310
              + IR+TD I   ++ 
Sbjct: 127 NDKFGIRLTDIITPSERI 144


>gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
 gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
          Length = 137

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 55  DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              + +RITD I   ++ 
Sbjct: 115 ADKFGVRITDIITPSERM 132


>gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 375

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
             ++  E +     +        + + I   +   +  +++++    G +I         
Sbjct: 281 QFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 339

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 340 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375



 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 7/216 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
               + +   +G +            ++  V+I+       K+  +   F          
Sbjct: 27  SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPIVSILKWEELPKEFPVPYVAIKVV 86

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                     +      V  + + ++G +   E   +L    LS +++    + +   S 
Sbjct: 87  YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEA-MNQMVGSAST 145

Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
            L+  ++   + +P       +  +  +        + +  +   MTI + + S  + +I
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQLI 205

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
           P +   +     L +   +  Q E           +
Sbjct: 206 PVDFAKQLVDAMLKNTLGTPAQIEVSAQKQQEAAKE 241


>gi|78358624|ref|YP_390073.1| surface presentation of antigens (SPOA) protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78221029|gb|ABB40378.1| Surface presentation of antigens (SPOA) protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 175

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 37/93 (39%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            ++++   D           + +++   +   +  + +++ L  G V+           +
Sbjct: 79  EEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEI 138

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             NGK +   E   + + + +R+TD I+  ++ 
Sbjct: 139 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 171


>gi|67641903|ref|ZP_00440668.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
           4]
 gi|121599067|ref|YP_994774.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
 gi|124384349|ref|YP_001027841.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10229]
 gi|126449143|ref|YP_001082211.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10247]
 gi|167000455|ref|ZP_02266269.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
 gi|167717396|ref|ZP_02400632.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           DM98]
 gi|167736439|ref|ZP_02409213.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 14]
 gi|167813513|ref|ZP_02445193.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 91]
 gi|167822055|ref|ZP_02453526.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 9]
 gi|167843668|ref|ZP_02469176.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           B7210]
 gi|167900651|ref|ZP_02487856.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
           13177]
 gi|167908871|ref|ZP_02495962.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 112]
 gi|167916910|ref|ZP_02504001.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           BCC215]
 gi|226193338|ref|ZP_03788948.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pakistan 9]
 gi|121227877|gb|ABM50395.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
 gi|124292369|gb|ABN01638.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10229]
 gi|126242013|gb|ABO05106.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10247]
 gi|225934938|gb|EEH30915.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522916|gb|EEP86358.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
           4]
 gi|243063643|gb|EES45829.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
          Length = 162

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 80  DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 139

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 140 NDKFGIRLTDIITPSERIRK 159


>gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Selenomonas sputigena ATCC 35185]
 gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Selenomonas sputigena ATCC 35185]
          Length = 394

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 35/75 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K T+KD++ L  G ++           +  NGK +   E+  + +
Sbjct: 315 ILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVVVIDE 374

Query: 295 NYTIRITDRINFDQK 309
           N+ +RITD ++  ++
Sbjct: 375 NFGVRITDIVSPAER 389


>gi|269961628|ref|ZP_06175990.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833669|gb|EEZ87766.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 136

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     +     +           + V I   +   + ++++++ L  
Sbjct: 24  PSIDVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|254251032|ref|ZP_04944350.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
 gi|124893641|gb|EAY67521.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
          Length = 166

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 84  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 143

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 144 NDKFGIRLTDIITPAERIRK 163


>gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1]
 gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1]
          Length = 154

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + VNI   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 75  ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 134

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 135 KFGIRLTDVISPSERIKK 152


>gi|170698079|ref|ZP_02889160.1| flagellar motor switch protein FliN [Burkholderia ambifaria
           IOP40-10]
 gi|170137040|gb|EDT05287.1| flagellar motor switch protein FliN [Burkholderia ambifaria
           IOP40-10]
          Length = 163

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 81  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 140

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 141 NDKFGIRLTDIITPAERIRK 160


>gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 375

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
             ++  E +     +        + + I   +   +  +++++    G +I         
Sbjct: 281 QFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 339

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 340 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375



 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 7/216 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
               + +   +G +            ++  V+I+       K+  +   F          
Sbjct: 27  SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPIVSILKWEELPKEFPVPYVAIKVV 86

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                     +      V  + + ++G +   E   +L    LS +++    + +   S 
Sbjct: 87  YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEA-MNQMVGSAST 145

Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
            L+  ++   + +P       +  +  +        + +  +   MTI + + S  + +I
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQLI 205

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
           P +   +     L +   +  Q E           +
Sbjct: 206 PVDFAKQLVDAMLKNTLGTPAQIEVSAQKQQEAAKE 241


>gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 379

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 2/196 (1%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
                +G +            ++  VDI+  S      S I  +F E            +
Sbjct: 39  DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVIPKSKISDAFPEPYVAIEVNYTEGF 98

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
           S +  +    N    + + ++G   +           +  ++   + +   +  ++   S
Sbjct: 99  SGSNLLVVEQNDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 158

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210
              + SP   +  D+   K       +E +  ++ N+ +   + SS + + P        
Sbjct: 159 KKIDISPPRVELLDVTEKKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDLI 218

Query: 211 LISLSSQNKSENQSED 226
              +++ N  E  +  
Sbjct: 219 SSLMNTGNAEEETTPQ 234



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 40/103 (38%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              +  +       N++             + ++I   +   K ++K+++ L  G +I  
Sbjct: 273 PVQVSPVEFSAFDPNEASQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIEL 332

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                    +  N + +   E+  + +N+ +R+TD ++  ++ 
Sbjct: 333 DKLAGEPVDILVNQRIVAKGEVVVIEENFGVRVTDILSQAERI 375


>gi|90577377|ref|ZP_01233188.1| putative flagellar motor switch protein [Vibrio angustum S14]
 gi|90440463|gb|EAS65643.1| putative flagellar motor switch protein [Vibrio angustum S14]
          Length = 257

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 90/287 (31%), Gaps = 44/287 (15%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDL--------DVDISYTSCQSGKFSHIIHSFKENFV 82
           + K    +       L        D         ++ +S TS              ++  
Sbjct: 6   LGKPIHIIKDELANILNNSLLGLTDQIQKWVKTHELTMSVTSIDFQSPKQ-----GQHAA 60

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
           F+              CS  L+I L +    +    +    +++++T + +L +R     
Sbjct: 61  FTVLHNDG--GMMNFRCSAPLLIALADRFYHSPVNRLNSTKSQTITTSDLRLQERIGRLF 118

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
           SA +                    D  +   N LS++    I +++T E      ++ I 
Sbjct: 119 SAQIAP-----------------EDMWQPCDNSLSDDIGLFIQLSVTCEETIGDIIICID 161

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
              +   T +           + +L   F+++     V ++T +  K+  L  V+ LK G
Sbjct: 162 SALIQTLTSVIG------LQPTSELNALFSQQLESTKVKLNTVLCEKQMPLDQVLQLKPG 215

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +      + +   +    + +++  +        +     IN  + 
Sbjct: 216 DIFDIDLLQSSPISI--GQEHLFNGHVAEQNGQLVL----IINTSKD 256


>gi|307824487|ref|ZP_07654712.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
           SV96]
 gi|307734471|gb|EFO05323.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
           SV96]
          Length = 126

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   I   +  +++++ L  G V+           +  NG  I   E+  +  
Sbjct: 47  ILDVPVTISMEIGRTQINIRNLLQLNQGSVVELERFAGEPLDVLVNGTLIAHGEVVVIND 106

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 107 KFGIRLTDVISPSERV 122


>gi|297584048|ref|YP_003699828.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           selenitireducens MLS10]
 gi|297142505|gb|ADH99262.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           selenitireducens MLS10]
          Length = 412

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 37/99 (37%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
              +  +       +           + + +   +   K ++K+++ L  G ++      
Sbjct: 310 QPAAFSSFETPSLNENEQRNLDLLMDIPLEVTVELGRTKRSIKEILELGQGSIVELDKLA 369

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  N + I   E+  + +N+ +R+TD ++  ++ 
Sbjct: 370 GEPVDILVNQRLIAKGEVVVIDENFGVRVTDIVSQAERL 408



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/207 (10%), Positives = 59/207 (28%), Gaps = 2/207 (0%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
                     +G +            ++  VDI+       + S +   F +     S  
Sbjct: 51  SDIEIDALGEIGNISFGSSATALSTLLNQKVDITTPKVSVVRKSDLEKEFPKPHVAISVT 110

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
             + +     +         + + ++G      P+       +  ++   + +   S  +
Sbjct: 111 YTAGFEGLNLLVIKTKDASIIADLMMGNDGTNAPEEMGDMELSAVQEAMNQMMGSASTSM 170

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
           +   +   + SP   D  D+            + +  I+ N+ I + + S  + ++    
Sbjct: 171 STIFNKKVDISPPGIDMMDLAENPDAIEIPGEDVLVQISFNLKIGDLIDSRIMQLLTVSF 230

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFA 232
                   ++     +       DP A
Sbjct: 231 AKDMVDQLMNPGGDDDVMDAVQEDPLA 257


>gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 112

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 34/91 (37%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                ++  D        + V +   +   +  +++++ L  G V+           +  
Sbjct: 18  QAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           NG  I   E+  V   + IR+TD ++  ++ 
Sbjct: 78  NGTLIAHGEVVVVNDRFGIRLTDVVSPSERI 108


>gi|91223553|ref|ZP_01258818.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269965695|ref|ZP_06179808.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
 gi|91191639|gb|EAS77903.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269829763|gb|EEZ83999.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
          Length = 136

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 40/111 (36%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     + +   +           + V I   +   + ++++++ L  
Sbjct: 24  PSVDVDEVLAAPLEELKDTSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
           35185]
 gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
           35185]
          Length = 398

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 35/75 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K T+KD++ L  G ++           +  NGK +   E+  + +
Sbjct: 319 ILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVVVIDE 378

Query: 295 NYTIRITDRINFDQK 309
           N+ +RITD ++  ++
Sbjct: 379 NFGVRITDIVSPAER 393


>gi|260772331|ref|ZP_05881247.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
           69.14]
 gi|260611470|gb|EEX36673.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
           69.14]
          Length = 136

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     +     +           + V I   +   K ++++++ L  
Sbjct: 24  PDVDVDEILAAPLDELKDTSPPITEDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
 gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
          Length = 174

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   I   + +++ ++ L  G V+           +  NG  I   E+  V +
Sbjct: 95  ILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNE 154

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 155 RFGIRLTDVISPAERVKK 172


>gi|153834118|ref|ZP_01986785.1| flagellar motor switch protein [Vibrio harveyi HY01]
 gi|156975422|ref|YP_001446329.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116]
 gi|148869488|gb|EDL68486.1| flagellar motor switch protein [Vibrio harveyi HY01]
 gi|156527016|gb|ABU72102.1| hypothetical protein VIBHAR_03153 [Vibrio harveyi ATCC BAA-1116]
          Length = 136

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     + +   D           + V I   +   + ++++++ L  
Sbjct: 24  PSIDVDEVLAAPLEELKDTSSPITDDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|163801853|ref|ZP_02195750.1| flagellar motor switch protein [Vibrio sp. AND4]
 gi|159174361|gb|EDP59165.1| flagellar motor switch protein [Vibrio sp. AND4]
          Length = 136

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     + +   D           + V I   +   + ++++++ L  
Sbjct: 24  PSIDVDEVLAAPLEELKDTSSPITDDERRKLDSIMDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|172059106|ref|YP_001806758.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
 gi|171991623|gb|ACB62542.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
          Length = 163

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 81  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 140

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 141 NDKFGIRLTDIITPAERIRK 160


>gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 226

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   I   + +++ ++ L  G V+           +  NG  I   E+  V +
Sbjct: 147 IMDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNE 206

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 207 RFGIRLTDVISAAERVKK 224


>gi|262393596|ref|YP_003285450.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
 gi|262337190|gb|ACY50985.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
          Length = 136

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 40/111 (36%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     + +   +           + V I   +   + ++++++ L  
Sbjct: 24  PSVDVDEVLAAPLEELKDTSSPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. campestris]
          Length = 112

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 38/97 (39%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            + ++    + +D  D        + V +   +   +  +++++ L  G V+        
Sbjct: 12  ATFESLHAERDQDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGE 71

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              +  NG  I   E+  +   + IR+TD ++  ++ 
Sbjct: 72  PLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108


>gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides]
 gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides]
          Length = 152

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 38/103 (36%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           L          + +   ++ L     R    + V +   +   + T++D++ L  G V+ 
Sbjct: 46  LPPFPTGARMTDATRPLADRLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVE 105

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                     +  NG  I   E+  VG+ + IR    I  +++
Sbjct: 106 LDRLAGDPLDVLVNGTPIAKGEVVMVGERFGIRFGQIIEPEKR 148


>gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
 gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
          Length = 142

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 60  ILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 119

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD +   ++ 
Sbjct: 120 KFGIRLTDIVTPSERM 135


>gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13]
          Length = 410

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 86/313 (27%), Gaps = 32/313 (10%)

Query: 14  HPILLAR-LTGKLGDKKT---IEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
              ++A  + G  G+       E   S++     + +              +DIS  S  
Sbjct: 114 DAAIIADLMLGGTGENPQNEFDEIHLSAVHEAMNQMMGSAATSMSTVFAKKIDISPPSVM 173

Query: 67  SGKF--SHIIHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119
              F          E+ +  + +          S+            L+E LL       
Sbjct: 174 LIDFKAGDGTSEMPEDELLIKVAFSIKIGKLIDSSIMQILPYPFAKKLVEELL------- 226

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                      E       I +     +Q   ++ E     +     DY ++   R   E
Sbjct: 227 -------HRDDETNQVSEVIQETEKPTSQANESSYEQRNQEQTASTADYYQREEERSVTE 279

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
                  +                 T     +      +      E+           + 
Sbjct: 280 API--REHAYAGGHERPSNPA--PRTQQAVNVQPAVFSSFETTTVEESEPNNLNMLLDIP 335

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   K ++KD++ L  G +I           +  N K I   E+  + +++ +R
Sbjct: 336 LQVTVELGRTKRSVKDILELSTGSIIELDKLAGEPVDILVNNKLIAQGEVVVIDESFGVR 395

Query: 300 ITDRINFDQKSLK 312
           +TD ++   +  K
Sbjct: 396 VTDIVSQTDRIRK 408



 Score = 70.4 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 62/196 (31%), Gaps = 2/196 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            ++  V I+       + S +   F +       +    
Sbjct: 42  QDALGEIGNISFGSSATALSTLLNQKVQITTPKVTLVEKSRLESEFPDPYVAIRVSYTEG 101

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +S +  +         + + +LG + E     ++    +   +   + +   +  ++   
Sbjct: 102 FSGSNILVVEQKDAAIIADLMLGGTGENPQNEFDEIHLSAVHEAMNQMMGSAATSMSTVF 161

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +   + SP      D       +    +E +  +  ++ I   + SS + I+P     K 
Sbjct: 162 AKKIDISPPSVMLIDFKAGDGTSEMPEDELLIKVAFSIKIGKLIDSSIMQILPYPFAKKL 221

Query: 210 TLISLSSQNKSENQSE 225
               L   +++   SE
Sbjct: 222 VEELLHRDDETNQVSE 237


>gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
 gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
          Length = 153

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 6/123 (4%)

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
             E +   +   + ++ +         +    S     DL          + V +   + 
Sbjct: 32  DSEGIEDEWAAAMSEQKVEPVKLETLTNPSVPSGGVGSDL-----DLIMDIPVVLSMELG 86

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             +  +++++ L  G V+           +  NG  I   E+  V   Y IR+TD ++  
Sbjct: 87  NTEIAIRNLMQLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVVVVNDKYGIRLTDVVSPS 146

Query: 308 QKS 310
           ++ 
Sbjct: 147 ERI 149


>gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct]
          Length = 158

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 78  ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVAVNE 137

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 138 KFGIRLTDVISPSERIKK 155


>gi|260767698|ref|ZP_05876633.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|260617207|gb|EEX42391.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|315179470|gb|ADT86384.1| flagellar motor switch protein [Vibrio furnissii NCTC 11218]
          Length = 136

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     + +   D           + V I   +   K ++++++ L  
Sbjct: 24  PDIDVDEVLAAPLDELKDTTSPISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|53717667|ref|YP_106653.1| flagellar motor switch protein [Burkholderia pseudomallei K96243]
 gi|126440526|ref|YP_001057085.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
 gi|126454703|ref|YP_001064315.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106a]
 gi|134281531|ref|ZP_01768239.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
 gi|167892139|ref|ZP_02479541.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           7894]
 gi|217423854|ref|ZP_03455354.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
 gi|237814423|ref|YP_002898874.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           MSHR346]
 gi|242314847|ref|ZP_04813863.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106b]
 gi|254174650|ref|ZP_04881311.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           10399]
 gi|254184093|ref|ZP_04890684.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1655]
 gi|254186559|ref|ZP_04893076.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254201358|ref|ZP_04907722.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
 gi|254206700|ref|ZP_04913051.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
 gi|254260996|ref|ZP_04952050.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710a]
 gi|254298639|ref|ZP_04966090.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           406e]
 gi|254357363|ref|ZP_04973637.1| flagellar motor switch protein FliN [Burkholderia mallei
           2002721280]
 gi|52208081|emb|CAH34011.1| probable flagellar motor switch protein [Burkholderia pseudomallei
           K96243]
 gi|126220019|gb|ABN83525.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
 gi|126228345|gb|ABN91885.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106a]
 gi|134247198|gb|EBA47284.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
 gi|147747252|gb|EDK54328.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
 gi|147752242|gb|EDK59308.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
 gi|148026427|gb|EDK84512.1| flagellar motor switch protein FliN [Burkholderia mallei
           2002721280]
 gi|157808697|gb|EDO85867.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           406e]
 gi|157934244|gb|EDO89914.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160695695|gb|EDP85665.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           10399]
 gi|184214625|gb|EDU11668.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1655]
 gi|217392917|gb|EEC32939.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
 gi|237504588|gb|ACQ96906.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           MSHR346]
 gi|242138086|gb|EES24488.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106b]
 gi|254219685|gb|EET09069.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710a]
          Length = 165

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 83  DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 142

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 143 NDKFGIRLTDIITPSERIRK 162


>gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 376

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
             ++  E +     +        + + I   +   +  +++++    G +I         
Sbjct: 282 QFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 340

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 341 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 376



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 7/216 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
               + +   +G +            ++  V+I+       K+  +   F          
Sbjct: 27  SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPIVSVLKWEELPKEFPVPYVAIKVV 86

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                     +      V  + + ++G +   E   +L    LS +++    + +   S 
Sbjct: 87  YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEA-MNQMVGSAST 145

Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
            L+  ++   + +P       +  +  +        + +  +   MTI + + S  + +I
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQLI 205

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
           P +   +     L +   +  Q E           +
Sbjct: 206 PVDFAKQLVDAMLKNALGTPAQIETSAQSQQESVKE 241


>gi|167834867|ref|ZP_02461750.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           MSMB43]
          Length = 130

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 48  DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 107

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 108 NDKFGIRLTDIITPSERIRK 127


>gi|160880834|ref|YP_001559802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium phytofermentans ISDg]
 gi|160429500|gb|ABX43063.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium phytofermentans ISDg]
          Length = 401

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/287 (9%), Positives = 77/287 (26%), Gaps = 34/287 (11%)

Query: 35  SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
            S++     + +          ++  VDI+           +I                 
Sbjct: 133 LSAISEAMNQMMGSASTSLSSMLEKKVDITPPVASIVDIPEVID---------------- 176

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC-- 149
             +      +  V  +   ++         +         ++L ++ +       N    
Sbjct: 177 GGDIAEFLKSRFV-KVSFRMVIGDLVDSELMQLYPF-DFARELYEQFMKYTETETNAADG 234

Query: 150 -ISTTQESSPNLEDFYDIDYLKKNTNRLSN----------EFVTTINMNMTIENVASSFV 198
                +E +   +     +      +   N          +      M++    +    +
Sbjct: 235 YSKPKKEKTVTPDPVETSNNNSFTQDIGKNMNMQTPQMQPQMAQMQGMSLQGMAMPGMSM 294

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
             +PQ  +    +     Q      S  L          + + +   +     ++++++ 
Sbjct: 295 QQVPQGMVQNVNIAPAQFQPFVNTGSPLLQTENIDLLLDVPLEVTVELGRTSKSIREILD 354

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
              G ++           +  NGK +   E+  + + + IR+TD I 
Sbjct: 355 FAPGTIVELNRLAGEPIDVLVNGKYVAKGEVVVIEEAFGIRVTDIIK 401



 Score = 58.1 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 68/244 (27%), Gaps = 12/244 (4%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTI----EKISSSLGYLYKKFLPKIFKEKMDL 56
           M G    +  + L   +         D +++          +  +            ++ 
Sbjct: 1   MDGMLSQEEINALLNGMGTENVETAADLESLTDSEIDALGEMSNISMGTAATTLSSLVNQ 60

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLLENLLGAS 115
            V I+       ++  ++ ++    VF           N  +      V  + + ++G  
Sbjct: 61  KVTITTPKVCYAEWEDLLSAYDRPCVFIQIYYKDGLDGNNILVLKEKDVKIITDLMMGGD 120

Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
                        +   +   + +   S  L+  +    + +P       +D  +     
Sbjct: 121 GLNSEGDLTELHLSAISEAMNQMMGSASTSLSSMLEKKVDITP--PVASIVDIPEVIDGG 178

Query: 176 LSNEFV----TTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP 230
              EF+      ++  M I + V S  + + P +   +     +       N ++    P
Sbjct: 179 DIAEFLKSRFVKVSFRMVIGDLVDSELMQLYPFDFARELYEQFMKYTETETNAADGYSKP 238

Query: 231 FARK 234
              K
Sbjct: 239 KKEK 242


>gi|76810554|ref|YP_331657.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710b]
 gi|76580007|gb|ABA49482.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710b]
          Length = 143

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 61  DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 120

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 121 NDKFGIRLTDIITPSERIRK 140


>gi|188592198|ref|YP_001796796.1| flim: flagellar motor switching and energizing component.
           flin/mopa/spao family. [Cupriavidus taiwanensis LMG
           19424]
 gi|170938572|emb|CAP63559.1| FliM: flagellar motor switching and energizing component.
           fliN/mopA/spaO family [Cupriavidus taiwanensis LMG
           19424]
          Length = 148

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 66  EMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 125

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 126 NDKFGIRLTDIITPSERIRK 145


>gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
           EF01-2]
 gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
           EF01-2]
          Length = 163

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V
Sbjct: 80  NRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 139

Query: 293 GKNYTIRITDRINFDQKS 310
              + IR+TD +   ++ 
Sbjct: 140 NDKFGIRLTDVVTPSERL 157


>gi|88813209|ref|ZP_01128449.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
 gi|88789531|gb|EAR20658.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
          Length = 138

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G V+           +  NG  +   E+  V +
Sbjct: 59  ILDVPVTLSMELGRTQIDIRNLLQLNQGSVVELDRLAGEPLDVMVNGTLVAHGEVVVVNE 118

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD ++  ++  K
Sbjct: 119 RFGIRLTDVVSQGERVRK 136


>gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
 gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
          Length = 288

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 22/236 (9%)

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              +  + NL  +L + ++G        +        +   +K  I+ I   ++  +S  
Sbjct: 58  TAMVALTPNLAASLSDMMMGEDASDRDDVS-----DDDLDASKEIISNIFGAISNSLSAQ 112

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---------- 203
           +E          I+++ ++++    ++         I ++ S F+ I+ +          
Sbjct: 113 KEIPVLSFKIDSIEFVGEDSDVSLEDYSKMYVYKFMIGDLTSLFMFILDENLNNSLEGNT 172

Query: 204 -----ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
                +++  +     S    +   S + ++  +     + + +  RI  KK  LKDV+ 
Sbjct: 173 KDNSHDSMSPSMSSVSSDYTSNVKLSGEEMNNIS-LIMDVKLPVRVRIGKKKMLLKDVLN 231

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           + IG VI           +  +   I   E+  V  N+ ++IT  I   ++ L   
Sbjct: 232 MDIGSVIELNQLANDPLDILVDNHVIAQGEVVIVDGNFGVQITS-IGSKRERLTQL 286


>gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein
           [Janthinobacterium sp. Marseille]
 gi|151280202|gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein
           [Janthinobacterium sp. Marseille]
          Length = 139

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 59  ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 118

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I   ++  K
Sbjct: 119 KFGIRLTDIITPAERIRK 136


>gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
 gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
          Length = 106

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 38/94 (40%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q K     ++           + V++   I   K T+++++ L  G ++P          
Sbjct: 9   QPKQTTLPQEADSEKMDLILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDRLAGDPLD 68

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG  +   E+  V   + +R+TD ++  ++ 
Sbjct: 69  VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 102


>gi|86146128|ref|ZP_01064454.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|148976421|ref|ZP_01813127.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
 gi|218708831|ref|YP_002416452.1| flagellar motor switch protein [Vibrio splendidus LGP32]
 gi|85836075|gb|EAQ54207.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|145964244|gb|EDK29500.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
 gi|218321850|emb|CAV17825.1| Flagellar motor switch protein fliN [Vibrio splendidus LGP32]
          Length = 136

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   +       L     S +   +           + V I   +   + ++++++ L  
Sbjct: 24  PSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
 gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
          Length = 129

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 47  DLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVV 106

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IRITD I   ++  +
Sbjct: 107 SDKFGIRITDIITPSERMYR 126


>gi|308048760|ref|YP_003912326.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
 gi|307630950|gb|ADN75252.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
          Length = 129

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 38/110 (34%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
              L +        Q  +    +            + V I   +   + ++++++ L  G
Sbjct: 18  AAALEEQAETVELEQFDAPMGGDSEQQRKLDAILDIPVTISMEVGRSQISIRNLLQLNQG 77

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            V+           +  NG  +   E+  V   + IR+TD I+  ++  K
Sbjct: 78  SVVELDRVAGEPLDVMVNGTLVAHGEVVVVNDKFGIRLTDVISQTERIKK 127


>gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 112

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 37/97 (38%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            + ++      ++  D        + V +   +   +  +++++ L  G V+        
Sbjct: 12  ATFESLQAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGE 71

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              +  NG  I   E+  +   + IR+TD ++  ++ 
Sbjct: 72  PLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108


>gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
           43970]
 gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
           43970]
          Length = 129

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 47  DLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVV 106

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IRITD I   ++  +
Sbjct: 107 SDKFGIRITDIITPSERMYR 126


>gi|90411031|ref|ZP_01219045.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
 gi|90328244|gb|EAS44555.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
          Length = 129

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                ++S   S+D           + V I   +   + ++++++ L  G V+       
Sbjct: 29  LEELVDESTPISDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 88  ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127


>gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
           35937]
          Length = 112

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 34/91 (37%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                ++  D        + V +   +   +  +++++ L  G V+           +  
Sbjct: 18  QAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           NG  I   E+  +   + IR+TD ++  ++ 
Sbjct: 78  NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108


>gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402]
          Length = 393

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  +K+++ +  G +I           +  N K I   E+  + +
Sbjct: 315 IMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEE 374

Query: 295 NYTIRITDRINFDQKSLK 312
           ++ +RIT+ ++  ++   
Sbjct: 375 SFGVRITEILSPAERISD 392


>gi|289208345|ref|YP_003460411.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
 gi|288943976|gb|ADC71675.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
          Length = 203

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P           L++      +  +L     +    + V I   I   +  +++++ L  
Sbjct: 96  PDPEAEPLKPEELAASAGMSAEDINL-----QMVLDVPVTISMEIGRSRIPIRNLLQLNQ 150

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V + + IR+TD I+  ++  K
Sbjct: 151 GSVVELDRLAGEALDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIRK 201


>gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2143]
 gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2143]
          Length = 152

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +   + ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 73  IMDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 133 KFGIRMTDVISPSERIKK 150


>gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC
           35405]
 gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola]
 gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC
           35405]
          Length = 393

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  +K+++ +  G +I           +  N K I   E+  + +
Sbjct: 315 IMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEE 374

Query: 295 NYTIRITDRINFDQKSLK 312
           ++ +RIT+ ++  ++   
Sbjct: 375 SFGVRITEILSPAERISD 392


>gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
 gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
          Length = 112

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 35/91 (38%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
              Q ++  D        + V +   +   +  +++++ L  G V+           +  
Sbjct: 18  QAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           NG  I   E+  +   + IR+TD ++  ++ 
Sbjct: 78  NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108


>gi|90579935|ref|ZP_01235743.1| flagellar motor switch protein [Vibrio angustum S14]
 gi|90438820|gb|EAS64003.1| flagellar motor switch protein [Vibrio angustum S14]
          Length = 129

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                + +   ++D           + V I   +   + ++++++ L  G V+       
Sbjct: 29  LEELTDDTVAITDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 88  ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127


>gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118]
 gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118]
          Length = 139

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V
Sbjct: 55  NRVLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 114

Query: 293 GKNYTIRITDRINFDQKS 310
              + IR+TD +   ++ 
Sbjct: 115 NDKFGIRLTDVVTPSERL 132


>gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 112

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 34/91 (37%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                ++  D        + V +   +   +  +++++ L  G V+           +  
Sbjct: 18  QAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           NG  I   E+  +   + IR+TD ++  ++ 
Sbjct: 78  NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108


>gi|209522294|ref|ZP_03270921.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
 gi|209497270|gb|EDZ97498.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
          Length = 153

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 71  DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 130

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 131 NDKFGIRLTDIITPSERIRK 150


>gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira
           defluvii]
 gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira
           defluvii]
          Length = 124

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 34/76 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +  +I   +  +++++ L  G VI           +  N K +   E+  V +
Sbjct: 45  VLDIPLQVTVQIGSTRMLIRELLQLGQGSVIELNKLAGEPMEVLVNNKLVARGEVVVVNE 104

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD ++ +Q+ 
Sbjct: 105 KFGIRLTDVVSPNQRI 120


>gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 134

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 30/103 (29%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                  +        +             + + +   +      +  ++ L  G VI  
Sbjct: 28  PDFDELSADAGSPAPSTASTGSQNLDFLLDVPLEVSVELGRTSMIINKMLQLTQGSVIEL 87

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                    +  N K +   E+  V + + IR+T+ I+   + 
Sbjct: 88  DKAAGEPVEIFVNQKLMGKGEVVVVNERFGIRVTEIISQADRI 130


>gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
 gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
          Length = 389

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 32/78 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   K ++ D++ L  G +I           +  N K +   E+  +
Sbjct: 307 DMLLDVPLKVTVELGRTKQSISDILDLSAGSIIELDKLAGEPVDILVNEKLVAEGEVVVI 366

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +R+TD I+   + 
Sbjct: 367 EENFGVRVTDIISQTDRI 384



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/198 (11%), Positives = 58/198 (29%), Gaps = 4/198 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQA 86
                     +G +            ++  V+I+  S +  + + I +    E       
Sbjct: 36  SSIEIDALGEIGNISFGSSATTLSTLLNQKVEITTPSVEVIEKADIDNEVTFEPVSVQVN 95

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
            +  +S              + + +LG    T  +  N    +  ++   + +   +  +
Sbjct: 96  YIDGFSGKNVFVIKARDAAIIADIMLGGDGTTPDETLNDIHLSAVQETMNQMMGAAATSM 155

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
           +       + SP        D    NT     +    +   +T+ N + S+ + +IP   
Sbjct: 156 STVFDMKVDISPPEIINGIEDN--ANTVVFDEDVYVKVFFRLTVGNLIDSNMMQLIPLSF 213

Query: 206 LLKTTLISLSSQNKSENQ 223
             +     L +  +    
Sbjct: 214 ARQLVDQLLHAPTEEAAV 231


>gi|84388119|ref|ZP_00991015.1| flagellar motor switch protein [Vibrio splendidus 12B01]
 gi|84377186|gb|EAP94056.1| flagellar motor switch protein [Vibrio splendidus 12B01]
          Length = 136

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   +       L     S +   +           + V I   +   + ++++++ L  
Sbjct: 24  PSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17]
 gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17]
          Length = 172

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +      +++++ L  G VI           +  NG  I   E+  V  
Sbjct: 92  IMDIPVTISMEVGNTMIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVND 151

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD ++  ++ 
Sbjct: 152 KFGIRLTDVMSPGERI 167


>gi|253996307|ref|YP_003048371.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
 gi|253982986|gb|ACT47844.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
          Length = 157

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 77  ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 136

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I   ++  K
Sbjct: 137 KFGIRLTDIITPAERIRK 154


>gi|78064700|ref|YP_367469.1| Type III secretion system outer membrane O protein [Burkholderia
           sp. 383]
 gi|77965445|gb|ABB06825.1| Type III secretion system outer membrane O protein [Burkholderia
           sp. 383]
          Length = 163

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 81  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 140

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 141 NDKFGIRLTDIITPAERIRK 160


>gi|330445374|ref|ZP_08309026.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489565|dbj|GAA03523.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 129

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                ++S   ++D           + V I   +   + ++++++ L  G V+       
Sbjct: 29  LEELTDESTPITDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 88  ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127


>gi|297538202|ref|YP_003673971.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
 gi|297257549|gb|ADI29394.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
          Length = 157

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 77  ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 136

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I   ++  K
Sbjct: 137 KFGIRLTDIITPAERIRK 154


>gi|115350087|ref|YP_771926.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
 gi|115280075|gb|ABI85592.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
          Length = 161

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 79  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 138

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 139 NDKFGIRLTDIITPAERIRK 158


>gi|54294678|ref|YP_127093.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Lens]
 gi|53754510|emb|CAH15994.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
           Lens]
          Length = 109

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q    N               + V++   I   K T+++++ L  G ++           
Sbjct: 14  QGNPLNPDPGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 71

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG  +   E+  V   + +R+TD ++  ++ 
Sbjct: 72  VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 105


>gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 381

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 37/93 (39%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           ++  +               + + I   +   K  +KD++ L  G +I           +
Sbjct: 285 DEEPSIEGKEEKENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDI 344

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            ANGK I   E+  + +N+ +RI D ++  ++ 
Sbjct: 345 LANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 377


>gi|237799246|ref|ZP_04587707.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022101|gb|EGI02158.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 153

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 74  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 133

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 134 KFGIRLTDVISPSERIKK 151


>gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus
           degradans 2-40]
 gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40]
          Length = 135

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +     T+++++ L  G VI           +  NG  I   E+  V +
Sbjct: 56  ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 115

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 116 KFGIRMTDVISPSERIKK 133


>gi|26991046|ref|NP_746471.1| flagellar motor switch protein [Pseudomonas putida KT2440]
 gi|24986078|gb|AAN69935.1|AE016632_6 flagellar motor switch protein FliN [Pseudomonas putida KT2440]
          Length = 161

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + VNI   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 82  ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 141

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 142 KFGIRLTDVISPSERIKK 159


>gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB
           8052]
          Length = 398

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 38/78 (48%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + ++I   +   K +++D++ L  G +I      +    +  NGK+I   E+  V
Sbjct: 317 DLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALGEVVVV 376

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ IRIT+ ++  ++ 
Sbjct: 377 DENFGIRITNIVSSVERI 394


>gi|226941270|ref|YP_002796344.1| FliN [Laribacter hongkongensis HLHK9]
 gi|226716197|gb|ACO75335.1| FliN [Laribacter hongkongensis HLHK9]
          Length = 141

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + VN+   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 59  DMILDIPVNMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 118

Query: 293 GKNYTIRITDRINFDQKS 310
              + IR+TD I   ++ 
Sbjct: 119 NDKFGIRLTDIITPAERL 136


>gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
           sp. MED92]
 gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
           sp. MED92]
          Length = 144

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +      + +++ L  G VI           +  NG  I   E+  V  
Sbjct: 65  ILDIPVTLSMEVGQTDIPISNLLQLNQGSVIELDRVAGEPLDVMVNGTLIAHGEVVVVND 124

Query: 295 NYTIRITDRINFDQKS 310
            Y IR+TD I+  ++ 
Sbjct: 125 RYGIRLTDVISPQERI 140


>gi|330961231|gb|EGH61491.1| flagellar motor switch protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 153

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 74  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 133

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 134 KFGIRLTDVISPSERIKK 151


>gi|302338091|ref|YP_003803297.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
           11293]
 gi|301635276|gb|ADK80703.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
           11293]
          Length = 375

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  +KD++ +  G +I           +  N K I   E+  + +
Sbjct: 296 LMDVYMEMTVELGRTKRLIKDILGMGEGTIIELDKLAGEPVDILVNHKLIAKGEVVVIDE 355

Query: 295 NYTIRITDRINFDQKS 310
           N+ +R+T+ ++   + 
Sbjct: 356 NFGVRVTEIVSPMDRV 371


>gi|170737014|ref|YP_001778274.1| surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia MC0-3]
 gi|169819202|gb|ACA93784.1| surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia MC0-3]
          Length = 290

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 82/298 (27%), Gaps = 41/298 (13%)

Query: 13  LHPILLARLTGKLGDKKTIE--KISSSLGYLYKKFLPKIFKEKMDLDV-DISYTSCQSGK 69
           L P  L R    L D       +I  SL   +        +      V +IS  + +S  
Sbjct: 31  LDPCTLGRPYHLLEDVLQDIKRRIDHSLHERF------NLRRGTSFVVTEISVAAMRSR- 83

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
                       V+   +         + C   L++ LL    G S +          + 
Sbjct: 84  ---------NAAVWRTYAC--TRGQISVRCDRELLLALLACHYGTSLDEAVPTAPAPETG 132

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E++ + +    +       +         L D  +      +        V  + ++  
Sbjct: 133 AERRFSAQQHTALLTAFASAM---------LGDQAEPFSPNGDMLPGPGVRVLRMTISDR 183

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           +  V       +  +  L      L +Q+          +        + V I   +  K
Sbjct: 184 LRKVGGDVEFALD-DMWLDHLFARLDAQHLRPAPDSAQANV------SIPVTISVHVLSK 236

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
              L +++ ++ G V+P          +  N   +Y   L        + IT     +
Sbjct: 237 NMRLDELLRMRPGDVLPVRLP--ETVDVLVNNVRLYRAALAEHQG--ALWITSFEPVE 290


>gi|107021593|ref|YP_619920.1| flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
 gi|116688063|ref|YP_833686.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           HI2424]
 gi|170731413|ref|YP_001763360.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
 gi|105891782|gb|ABF74947.1| Flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
 gi|116646152|gb|ABK06793.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           HI2424]
 gi|169814655|gb|ACA89238.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
          Length = 162

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 80  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 139

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 140 NDKFGIRLTDIITPAERIRK 159


>gi|83721171|ref|YP_440588.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|83654996|gb|ABC39059.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
          Length = 143

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 61  DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 120

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 121 NDKFGIRLTDIITPSERIRK 140


>gi|77457774|ref|YP_347279.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
 gi|77381777|gb|ABA73290.1| putative flagellar motor switch protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 152

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE- 225
           D   ++   L++E+   +             +L     T     L      +  +N    
Sbjct: 4   DMNTQDDQALADEWAAALEETGEAGQADIDALLAADAGTSSSNRLPMEEFGSVPKNNDPV 63

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
            L  P       + V+I   +      +++++ L  G VI           +  NG  I 
Sbjct: 64  TLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 123

Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312
             E+  V + + IR+TD I+  ++  K
Sbjct: 124 HGEVVVVNEKFGIRLTDVISPSERIKK 150


>gi|134294172|ref|YP_001117907.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
 gi|134137329|gb|ABO53072.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
          Length = 169

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  +   E+  V
Sbjct: 87  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLLAQGEVVVV 146

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 147 NDKFGIRLTDIITPAERIRK 166


>gi|5921671|gb|AAD56295.1| FliN [Pseudomonas putida]
 gi|313497807|gb|ADR59173.1| FliN [Pseudomonas putida BIRD-1]
          Length = 160

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + VNI   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 81  ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 140

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 141 KFGIRLTDVISPSERIKK 158


>gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor owensensis OL]
 gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor owensensis OL]
          Length = 376

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
             ++  E +     +        + + I   +   +  +++++    G +I         
Sbjct: 282 QFESFDEEEERKYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 340

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 341 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 376



 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 63/201 (31%), Gaps = 7/201 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
               + +   +G +            ++  V+I+       K+  +   F          
Sbjct: 27  SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSVLKWDELPKEFPVPYVAIKVV 86

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                     +      V  + + ++G +   E   QL    LS +++    + +   S 
Sbjct: 87  YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEQLTELQLSAIQEA-MNQMVGSAST 145

Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
            L+  ++   + +P       +  +  +        + +  I   MTI + + S  + +I
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKIAFRMTIGDLIDSQIMQLI 205

Query: 202 PQETLLKTTLISLSSQNKSEN 222
           P +   +     L +   + +
Sbjct: 206 PVDFAKQLVDAMLRNTLGTSD 226


>gi|296135699|ref|YP_003642941.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
 gi|295795821|gb|ADG30611.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
          Length = 144

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 31/77 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 63  DLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEVVLV 122

Query: 293 GKNYTIRITDRINFDQK 309
              + IR+TD ++  ++
Sbjct: 123 NDKFGIRLTDIVSPTER 139


>gi|167579275|ref|ZP_02372149.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           TXDOH]
 gi|167617381|ref|ZP_02386012.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           Bt4]
          Length = 165

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 83  DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 142

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 143 NDKFGIRLTDIITPSERIRK 162


>gi|254491664|ref|ZP_05104843.1| flagellar motor switch protein FliN [Methylophaga thiooxidans
           DMS010]
 gi|224463142|gb|EEF79412.1| flagellar motor switch protein FliN [Methylophaga thiooxydans
           DMS010]
          Length = 155

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V I   I   + ++++++ L  G V+           +  N   I   E+  V
Sbjct: 74  DMVMDIPVTISMEIGRTRISIRNLLQLSQGSVVELDRLAGEPMDVLVNDTLIAHGEVVVV 133

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I+  ++  K
Sbjct: 134 NDKFGIRLTDVISASERIKK 153


>gi|91776322|ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus flagellatus KT]
 gi|91710309|gb|ABE50237.1| Flagellar motor switch FliN [Methylobacillus flagellatus KT]
          Length = 142

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 62  ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 121

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I   ++  K
Sbjct: 122 KFGIRLTDIITPAERIRK 139


>gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
           12260]
 gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
           12260]
          Length = 374

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 34/78 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V I   +   + T+ +V+ +  G V+           +  NGK +   E+  +
Sbjct: 292 DLIVDIPVRITVELGRARKTIGEVLGMGPGSVVELNRMAGEPVDVLVNGKLMARGEVVVI 351

Query: 293 GKNYTIRITDRINFDQKS 310
            +++ IR+T+ ++  ++ 
Sbjct: 352 DESFGIRVTEIVSRAERI 369


>gi|52842018|ref|YP_095817.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|296107382|ref|YP_003619082.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
           2300/99 Alcoy]
 gi|52629129|gb|AAU27870.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|295649283|gb|ADG25130.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
           2300/99 Alcoy]
 gi|307610491|emb|CBX00063.1| flagellar motor switch protein FliN [Legionella pneumophila 130b]
          Length = 109

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q    N               + V++   I   K T+++++ L  G ++           
Sbjct: 14  QGNPLNPDPGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 71

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG  +   E+  V   + +R+TD ++  ++ 
Sbjct: 72  VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 105


>gi|171316889|ref|ZP_02906098.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
 gi|171097970|gb|EDT42788.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
          Length = 172

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 90  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 149

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 150 NDKFGIRLTDIITPAERIRK 169


>gi|257095346|ref|YP_003168987.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047870|gb|ACV37058.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 145

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 31/77 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 63  DMILDIPVQLAVELGRTRITIKNLLQLAHGSVVELDAMAGEPLNVFVNGTLIAQGEVVVV 122

Query: 293 GKNYTIRITDRINFDQK 309
              + IR+TD +   ++
Sbjct: 123 NDKFGIRLTDIVTPAER 139


>gi|294339870|emb|CAZ88233.1| Flagellar motor switch protein fliN [Thiomonas sp. 3As]
          Length = 144

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 31/77 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 63  DLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEVVLV 122

Query: 293 GKNYTIRITDRINFDQK 309
              + IR+TD ++  ++
Sbjct: 123 NDKFGIRLTDIVSPTER 139


>gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
 gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
          Length = 133

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVT 258
           Q  L    L++     +S     +  D   +        + +++   I   +  L++V+ 
Sbjct: 17  QPELSPDELMAQQFAQESYGSETEEEDRIEKSKFSILLDVPLDVIVEIGSTQMPLEEVLK 76

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           L    V+           L  NGK I   EL  V  N+ ++IT  +  +++ 
Sbjct: 77  LNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTVKNNFGLKITHVVTPEERL 128


>gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Corby]
 gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Corby]
          Length = 109

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q    N               + V++   I   K T+++++ L  G ++           
Sbjct: 14  QGNPLNPDPGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 71

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG  +   E+  V   + +R+TD ++  ++ 
Sbjct: 72  VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 105


>gi|330808226|ref|YP_004352688.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376334|gb|AEA67684.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 152

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 73  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 133 KFGIRLTDVISPSERIKK 150


>gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea
           MMB-1]
 gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea
           MMB-1]
          Length = 150

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + VN+   +      +++++ L  G V+           +  NG  I   E+  V
Sbjct: 69  DLIMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVVV 128

Query: 293 GKNYTIRITDRINFDQKS 310
              Y IR+TD ++  ++ 
Sbjct: 129 NDKYGIRLTDVVSPSERI 146


>gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
 gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
          Length = 157

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 3/112 (2%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           IP E L K + +       +                 + V +   +   +  +K+++ L 
Sbjct: 46  IPDEDLTKPSSVFEQFSRNNVLNDTRNDIDM---ILDIPVQLTVELGRTRIAIKNLLQLA 102

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            G VI           +  NG  I   E+  V + + IR+TD I   ++  K
Sbjct: 103 QGSVIELDGMAGEPMDVLVNGCLIAQGEVVVVNEKFGIRLTDIITPSERIRK 154


>gi|254194758|ref|ZP_04901189.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
 gi|169651508|gb|EDS84201.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
          Length = 165

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 83  DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLINGCLIAQGEVVVV 142

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 143 NDKFGIRLTDIITPSERIRK 162


>gi|187925748|ref|YP_001897390.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
           PsJN]
 gi|187716942|gb|ACD18166.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
           PsJN]
          Length = 154

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 72  DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 132 NDKFGIRLTDIITPSERIRK 151


>gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 386

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   K TLKDV+ L+ G VI           +  N + I   E+  +
Sbjct: 306 ENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMINDELIARGEVVVI 365

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ IRIT+ I+  ++ 
Sbjct: 366 DENFGIRITEIISPRERL 383


>gi|254246640|ref|ZP_04939961.1| Surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia PC184]
 gi|124871416|gb|EAY63132.1| Surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia PC184]
          Length = 164

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 82  EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 141

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 142 NDKFGIRLTDIITPAERIRK 161


>gi|291613060|ref|YP_003523217.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
           ES-1]
 gi|291583172|gb|ADE10830.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
           ES-1]
          Length = 135

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 53  DMILDIPVKLTVELGHTKMPIKNLLQLAQGSVVELAGLAGEPLDVLINGFLIAQGEVVVV 112

Query: 293 GKNYTIRITDRINFDQKS 310
                IR+TD I   ++ 
Sbjct: 113 NDKLGIRLTDIITPSERL 130


>gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
 gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
          Length = 147

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +     T+++++ L  G VI           +  NG  I   E+  V +
Sbjct: 68  ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 127

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 128 KFGIRMTDVISPSERIKK 145


>gi|170694406|ref|ZP_02885560.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
 gi|170140829|gb|EDT09003.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
          Length = 155

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 73  DMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 132

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 133 NDKFGIRLTDIITPSERIRK 152


>gi|89075521|ref|ZP_01161932.1| flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89048793|gb|EAR54364.1| flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 129

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                +++   ++D           + V I   +   + ++++++ L  G V+       
Sbjct: 29  LEELTDETVPITDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 88  ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127


>gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
 gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
          Length = 261

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 79/265 (29%), Gaps = 22/265 (8%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           +   L K F +       ++  S +    +    + ++  +F        S   F    +
Sbjct: 16  FCGALAKPFSDACTSTWHLAL-STEPVPTA---PALEDAVIFRCTFSGEVSGQGFALLRH 71

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
             V+TL                  +                   L Q +S     +  +E
Sbjct: 72  AEVVTL--------GLQDMLDDTDAFGDEHAMALSSIFEASCNELCQHLSQKSPVTVQVE 123

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
                +                  + +  E       +++  +  L TT  + S+Q  S 
Sbjct: 124 RMSAPELP----------TDRLAELFLEAEGTKIRVSILLFFDQQLVTTYQNASAQTFSF 173

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
            +              + +N+  R   ++ +L++V+ L  G V+    +      L  +G
Sbjct: 174 PEVTGTSTSNLNLVLDVELNVTLRFGQRQLSLREVLDLTSGSVVELDRQVDEPVELVLDG 233

Query: 282 KEIYSCELGRVGKNYTIRITDRINF 306
           K +   E   +  NY +RIT  +  
Sbjct: 234 KVVARGEAVIIDGNYGMRITQVLQQ 258


>gi|28899015|ref|NP_798620.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836941|ref|ZP_01989608.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|260365239|ref|ZP_05777796.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
 gi|260878789|ref|ZP_05891144.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AN-5034]
 gi|260897384|ref|ZP_05905880.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           Peru-466]
 gi|260899943|ref|ZP_05908338.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AQ4037]
 gi|4322005|gb|AAD15908.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus]
 gi|28807234|dbj|BAC60504.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749714|gb|EDM60459.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|308088279|gb|EFO37974.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           Peru-466]
 gi|308094260|gb|EFO43955.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AN-5034]
 gi|308107230|gb|EFO44770.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AQ4037]
 gi|308115407|gb|EFO52947.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
 gi|328474448|gb|EGF45253.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
          Length = 136

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     +     D           + V I   +   + ++++++ L  
Sbjct: 24  PSIDVDEVLAAPLEELKDTSRPITDDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|269103168|ref|ZP_06155865.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163066|gb|EEZ41562.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 128

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                + S   S+D           + V I   +   + ++++++ L  G V+       
Sbjct: 28  LEELTDDSAPVSDDERRKL-DSILDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRVAG 86

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 87  ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 126


>gi|149188093|ref|ZP_01866388.1| flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148838081|gb|EDL55023.1| flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 136

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P+  + +     L     S     +           + V I   +   + ++++++ L  
Sbjct: 24  PEIDVDEVLAAPLDELQDSPAPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|332531131|ref|ZP_08407045.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
 gi|332039416|gb|EGI75828.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
          Length = 122

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +    ++S S++  +                 + V +   +   K  +K ++ L  G V
Sbjct: 17  AVEPGGVLSESARGDAPAAD-------INMVLDIPVQLSVELGRTKVPIKHILQLGQGSV 69

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +           +  NG  I   E+  V   + IR+TD +   ++ 
Sbjct: 70  VELDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERL 115


>gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
 gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
          Length = 289

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 93/287 (32%), Gaps = 19/287 (6%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
           ++S L  + K  L    ++ +     +   S +  K    +    E     +  +   SS
Sbjct: 1   MASDLSNILKSELANTLEQLLSKKTKVD--SVEKFKNDTNLTQLIE--CNVKLDMKGLSS 56

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL-NQCIST 152
                            +LG   E    + + +   + + +        S ++  Q +S 
Sbjct: 57  RIHFYIPAVSATKFEYLMLGGMGELKESIDDETTDAINE-IISNICGSFSTLVNAQGLSD 115

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN------------MTIENVASSFVLI 200
                  ++    ++    +    + EF  +++              +   +  +     
Sbjct: 116 VGSIKSEIKSTIKVENSVLSAKDDAYEFTISLDDEKYKLMVVFDKLLLPYFSAITGIYQE 175

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
            P+  +  +T +S ++ + + +             Y + + +  R+  K   LKD++   
Sbjct: 176 EPKVQVTPSTPVSNNTGSSNNSSVTPTSKNL-ELLYNVKLKLSVRLGTKIVLLKDILRWD 234

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +G++I           +  NG +I   E   V   + ++I   IN D
Sbjct: 235 VGEIIELEQMVNEPLEILINGVKIGEGEAVIVEGKFGLKIKRIINED 281


>gi|186477686|ref|YP_001859156.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
 gi|184194145|gb|ACC72110.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
          Length = 154

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 72  DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 132 NDKFGIRLTDIITPSERIRK 151


>gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893]
 gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893]
          Length = 172

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 92  ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 151

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 152 KFGIRLTDVISPGERI 167


>gi|71733965|ref|YP_275530.1| flagellar motor switch protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484905|ref|ZP_05638946.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289629022|ref|ZP_06461976.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289651612|ref|ZP_06482955.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487823|ref|ZP_07005863.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554518|gb|AAZ33729.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157548|gb|EFH98628.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325125|gb|EFW81194.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329384|gb|EFW85377.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866456|gb|EGH01165.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330889049|gb|EGH21710.1| flagellar motor switch protein [Pseudomonas syringae pv. mori str.
           301020]
 gi|330986500|gb|EGH84603.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331011075|gb|EGH91131.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 152

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 73  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 133 KFGIRLTDVISPSERIKK 150


>gi|330972447|gb|EGH72513.1| flagellar motor switch protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 152

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 73  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 133 KFGIRLTDVISPSERIKK 150


>gi|170722846|ref|YP_001750534.1| flagellar motor switch protein [Pseudomonas putida W619]
 gi|169760849|gb|ACA74165.1| flagellar motor switch protein FliN [Pseudomonas putida W619]
          Length = 154

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 1/147 (0%)

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE- 225
           +        L++E+   +             +L     +     L      +    +   
Sbjct: 6   EITSPEDQALADEWAAALEETGDAGQADIDALLGGDGGSAGAGRLPMEEFASSPRPKENV 65

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
            L  P       + VNI   +   +  +++++ L  G VI           +  NG  I 
Sbjct: 66  SLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 125

Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312
             E+  V + + IR+TD I+  ++  K
Sbjct: 126 HGEVVVVNEKFGIRLTDVISPSERIKK 152


>gi|28869174|ref|NP_791793.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967549|ref|ZP_03395697.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato T1]
 gi|301382886|ref|ZP_07231304.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061096|ref|ZP_07252637.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302131288|ref|ZP_07257278.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28852414|gb|AAO55488.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927850|gb|EEB61397.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato T1]
 gi|330876027|gb|EGH10176.1| flagellar motor switch protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964685|gb|EGH64945.1| flagellar motor switch protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 152

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 73  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 133 KFGIRLTDVISPSERIKK 150


>gi|77359749|ref|YP_339324.1| flagellar motor switch protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874660|emb|CAI85881.1| flagellar biosynthesis; component of motor switch and energizing
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 132

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                +     S D           + V I   +   K  +++++ L  G V+       
Sbjct: 32  LDELSDAKHEISGDEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAG 90

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 91  EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130


>gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis]
 gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis]
          Length = 150

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   + T+++++ L  G VI           +  NG  I   E+  V +
Sbjct: 71  ILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 130

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 131 KFGIRMTDVISPSERIKK 148


>gi|330953759|gb|EGH54019.1| flagellar motor switch protein [Pseudomonas syringae Cit 7]
          Length = 152

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 73  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 133 KFGIRLTDVISPSERIKK 150


>gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
           c2]
 gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
           c2]
          Length = 139

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   I      ++ ++ L  G ++           +  NG  I   E+  +
Sbjct: 58  EVLMDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRLAGEPLDVLVNGTLIARGEVVVI 117

Query: 293 GKNYTIRITDRINFDQKSLK 312
            + + IR+TD I+  ++  K
Sbjct: 118 NEKFGIRLTDVISPAERLRK 137


>gi|212634375|ref|YP_002310900.1| flagellar motor switch protein [Shewanella piezotolerans WP3]
 gi|212555859|gb|ACJ28313.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
          Length = 126

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                + +   SE+           + V I   +      +++++ L  G V+       
Sbjct: 26  LDEFSSDAAPLSEEEASKL-DAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAG 84

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 85  EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 124


>gi|66046675|ref|YP_236516.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|289678974|ref|ZP_06499864.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
           FF5]
 gi|63257382|gb|AAY38478.1| Surface presentation of antigens (SPOA) protein [Pseudomonas
           syringae pv. syringae B728a]
 gi|330899438|gb|EGH30857.1| flagellar motor switch protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330940698|gb|EGH43709.1| flagellar motor switch protein [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330976006|gb|EGH76072.1| flagellar motor switch protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 152

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 73  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 133 KFGIRLTDVISPSERIKK 150


>gi|323527700|ref|YP_004229853.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
 gi|323384702|gb|ADX56793.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
          Length = 155

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 73  DMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 132

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 133 NDKFGIRLTDIITPSERIRK 152


>gi|242281270|ref|YP_002993399.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
           2638]
 gi|242124164|gb|ACS81860.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
           2638]
          Length = 229

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   +   K  + +++ L  G V+           +  NGK +   E   + +
Sbjct: 150 ILDIPLDVSAELGRAKMLINELLQLGTGSVVELTKLAGEPLEIYVNGKLVARGEAVVINE 209

Query: 295 NYTIRITDRINFDQKSLKNF 314
            + IR+TD I+  ++ +K+ 
Sbjct: 210 KFGIRLTDIISPIER-VKHL 228


>gi|71906404|ref|YP_283991.1| Type III secretion system outer membrane O protein [Dechloromonas
           aromatica RCB]
 gi|71846025|gb|AAZ45521.1| Type III secretion system outer membrane O protein [Dechloromonas
           aromatica RCB]
          Length = 147

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V I   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 65  DMILDIPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVVV 124

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 125 NDKFGIRLTDIITPSERMRK 144


>gi|331016993|gb|EGH97049.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 152

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 73  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 133 KFGIRLTDVISPSERIKK 150


>gi|312962265|ref|ZP_07776757.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
           WH6]
 gi|311283602|gb|EFQ62191.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
           WH6]
          Length = 155

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 76  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 136 KFGIRLTDVISPSERIKK 153


>gi|295678045|ref|YP_003606569.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
 gi|295437888|gb|ADG17058.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
          Length = 154

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 72  DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 132 NDKFGIRLTDIITPSERIRK 151


>gi|56460300|ref|YP_155581.1| flagellar motor switch protein [Idiomarina loihiensis L2TR]
 gi|56179310|gb|AAV82032.1| Flagellar motor switch [Idiomarina loihiensis L2TR]
          Length = 151

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
              +       L   ++ +  +E+           + V I   +   + ++++++ L  G
Sbjct: 41  HSGMDNVQTAELEELSEDKPVTEEEKRKL-DAILDIPVTISMEVGRSQISIRNLLQLNQG 99

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 100 SVVELERVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIRK 149


>gi|226313057|ref|YP_002772951.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
           100599]
 gi|226096005|dbj|BAH44447.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
           100599]
          Length = 455

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 34/80 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + + +   +   K  +++++ L  G +I           +  N K I   E+  +
Sbjct: 374 NLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAKGEVVVI 433

Query: 293 GKNYTIRITDRINFDQKSLK 312
            +N+ +R+TD I+   +  K
Sbjct: 434 DENFGVRVTDIISQIDRVQK 453



 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 10/188 (5%), Positives = 48/188 (25%), Gaps = 6/188 (3%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
           +     +G +            +   VDI+  +        +   F              
Sbjct: 44  QDALGEIGNISFGSAATALSTLLSQKVDITTPTVSVVNVDELESEFPIPHVAVHVEYTDG 103

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           +     +         + + ++G          +    +  ++   + +   +  ++   
Sbjct: 104 FKGINLLVIRMEDAAVIADLMMGGDGRPASTEMSELHISAVQEAMNQMMGSAATSMSTIF 163

Query: 151 STTQESSPN-LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA----SSFVLIIPQET 205
           +     +P  ++          ++    +  +  ++  + +        S+ + ++P   
Sbjct: 164 NQFINITPPGIDVMDLAQGKGGDSFSDDDSPLVKVSFRLKVGEHGELIDSNIMQLLPLSF 223

Query: 206 LLKTTLIS 213
             K     
Sbjct: 224 AKKMIDRL 231


>gi|167034914|ref|YP_001670145.1| flagellar motor switch protein [Pseudomonas putida GB-1]
 gi|166861402|gb|ABY99809.1| flagellar motor switch protein FliN [Pseudomonas putida GB-1]
          Length = 154

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSE 225
           +        L++E+   +    +        +L     +     L       +   N++ 
Sbjct: 6   EITSAEDQALADEWAAALEETGSAGQADIDALLGGDAGSSGSGRLPMEEFASSPKPNENV 65

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
            L  P       + VNI   +   +  +++++ L  G VI           +  NG  I 
Sbjct: 66  SLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 125

Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312
             E+  V + + IR+TD I+  ++  K
Sbjct: 126 HGEVVVVNEKFGIRLTDVISPSERIKK 152


>gi|302185373|ref|ZP_07262046.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
           642]
          Length = 152

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 73  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 133 KFGIRLTDVISPSERIKK 150


>gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
 gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY]
 gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
 gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY]
          Length = 149

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 68  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 127

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD +   ++ 
Sbjct: 128 KFGIRLTDVVTPSERL 143


>gi|259907614|ref|YP_002647970.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
 gi|224963236|emb|CAX54720.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
 gi|283477456|emb|CAY73372.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
 gi|310764880|gb|ADP09830.1| Flagellar motor switch protein FliN [Erwinia sp. Ejp617]
          Length = 124

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 42  NLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 101

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IRITD I   ++  +
Sbjct: 102 SDKFGIRITDIITPSERMHR 121


>gi|163750542|ref|ZP_02157780.1| flagellar motor switch protein [Shewanella benthica KT99]
 gi|161329697|gb|EDQ00686.1| flagellar motor switch protein [Shewanella benthica KT99]
          Length = 127

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 42/122 (34%)

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
           E+    +   + ++ + +   + L                       + V I   +    
Sbjct: 4   EDTGDDWAAAMAEQAIEEAQAVELDELTDESQVFPADEAVKFDTIMDIPVTISMEVGRSF 63

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            ++++++ L  G V+           +  NG  I   E+  V   + IR+TD I+  ++ 
Sbjct: 64  ISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI 123

Query: 311 LK 312
            K
Sbjct: 124 KK 125


>gi|83647848|ref|YP_436283.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
 gi|83635891|gb|ABC31858.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
          Length = 172

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 92  ILDIPVTISMEVGNTQIAIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 151

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 152 KFGIRLTDVISPSERIKK 169


>gi|30248479|ref|NP_840549.1| flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718]
 gi|30138365|emb|CAD84374.1| possible flagellar motor switch FliN [Nitrosomonas europaea ATCC
           19718]
          Length = 157

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   +  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 75  DMILDIPVQLTVELGRTRIAIKNLLQLAQGSVVELNGMAGEPMDVLVNGCLIAQGEVVVV 134

Query: 293 GKNYTIRITDRINFDQKSLK 312
            + + IR+TD I   ++  K
Sbjct: 135 NEKFGIRLTDIITPSERIRK 154


>gi|292489154|ref|YP_003532041.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|292900272|ref|YP_003539641.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291200120|emb|CBJ47246.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291554588|emb|CBA22222.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
          Length = 124

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 42  NLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 101

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IRITD I   ++  +
Sbjct: 102 SDKFGIRITDIITPSERMHR 121


>gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 83

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 1   DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 60

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RITD I   ++ 
Sbjct: 61  ADKYGVRITDIITPSERM 78


>gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter
           carbinolicus DSM 2380]
 gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter
           carbinolicus DSM 2380]
          Length = 103

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   I   +  +KD++ L+ G +I           L  N + I   E   V  
Sbjct: 24  LLDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGEPLDLYVNSRLIARGEAVMVKD 83

Query: 295 NYTIRITDRINFDQKS 310
            Y +R+TD ++  ++ 
Sbjct: 84  RYGLRLTDVVSPAERL 99


>gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8]
 gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8]
          Length = 166

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 86  ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 145

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 146 KFGIRLTDVISPGERI 161


>gi|300311367|ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074152|gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum
           seropedicae SmR1]
          Length = 151

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 71  ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 130

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I   ++  K
Sbjct: 131 KFGIRLTDIITPAERIRK 148


>gi|300113611|ref|YP_003760186.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
 gi|299539548|gb|ADJ27865.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
          Length = 153

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   I   + ++++++ L  G V+           +  NG  I   EL  V
Sbjct: 72  ELILDIPVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVV 131

Query: 293 GKNYTIRITDRINFDQKS 310
            + + IR+TD I+  ++ 
Sbjct: 132 NEKFGIRLTDVISAPERV 149


>gi|300696947|ref|YP_003747608.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum CFBP2957]
 gi|299073671|emb|CBJ53191.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum CFBP2957]
          Length = 163

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 81  DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 140

Query: 293 GKNYTIRITDRINFDQKS 310
            + + IR+TD I   ++ 
Sbjct: 141 NEKFGIRLTDIITPSERI 158


>gi|147674715|ref|YP_001217647.1| flagellar motor switch protein [Vibrio cholerae O395]
 gi|146316598|gb|ABQ21137.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
 gi|227014021|gb|ACP10231.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
          Length = 138

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     +     D           + V I   +   K ++++++ L  
Sbjct: 26  PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 85

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 86  GSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 136


>gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
 gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
          Length = 155

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +     T+++++ L  G VI           +  NG  I   E+  V +
Sbjct: 76  ILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 136 KFGIRLTDVISPSERIKK 153


>gi|262167484|ref|ZP_06035190.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
 gi|262024056|gb|EEY42751.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
          Length = 136

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     +     D           + V I   +   K ++++++ L  
Sbjct: 24  PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|212704407|ref|ZP_03312535.1| hypothetical protein DESPIG_02462 [Desulfovibrio piger ATCC 29098]
 gi|212672128|gb|EEB32611.1| hypothetical protein DESPIG_02462 [Desulfovibrio piger ATCC 29098]
          Length = 234

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 7/178 (3%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
             +E+    ++++    +   F  +    +E        L        +      V +LL
Sbjct: 54  SMEEQRGRLLELTPLPVRRRPFGSVADGIREASCCCAVDLEGLEEPALLVLDRAFVFSLL 113

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           E   GA      +   R L+ +E  LA++   +  A  +          P     + +  
Sbjct: 114 EEFFGAGG--FERPGRRPLTALETMLARKFADRFLAAFDLAGKP-SSWHPRCG--HSLSL 168

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP--QETLLKTTLISLSSQNKSENQS 224
            +        + V  +     +     +  L +P    T L           K     
Sbjct: 169 PRLAVLVPDEQPVWHLAFRSLLGGRPGALHLCLPEDFSTHLAVRSALPGPGRKKNIPD 226


>gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa]
 gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa]
          Length = 284

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +  R+   +  +KD++ L  G V+           +  N K +   E+  V  
Sbjct: 206 LLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEVVMVND 265

Query: 295 NYTIRITDRINFDQKS 310
            Y +R+TD ++  ++ 
Sbjct: 266 KYGVRLTDIVSPIERI 281


>gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter
           hydrocarbonoclasticus]
          Length = 166

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 86  ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 145

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 146 KFGIRLTDVISPGERI 161


>gi|239997092|ref|ZP_04717616.1| flagellar motor switch protein [Alteromonas macleodii ATCC 27126]
          Length = 135

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 1/106 (0%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
               +  L         +++           + V I   +   + ++++++ L  G V+ 
Sbjct: 29  EDVQVAELDELTDDAPITQEEKKKL-DTILDIPVTISMEVGRSQISIRNLLQLNQGSVVE 87

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                     +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 88  LDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 133


>gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107]
 gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107]
          Length = 133

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +     T+++++ L  G VI           +  NG  I   E+  V +
Sbjct: 54  ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 113

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 114 KFGIRMTDVISPAERIKK 131


>gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC3088]
 gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC3088]
          Length = 102

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + VNI   +   K  +KD++ LK G V+           L  N   +   E+  V
Sbjct: 22  EVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNNTVVAQGEVVLV 81

Query: 293 GKNYTIRITDRINFDQKS 310
            + Y +R+T+ I  + + 
Sbjct: 82  NERYGVRLTNVIPSEDRI 99


>gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum
           GMI1000]
 gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia
           solanacearum GMI1000]
          Length = 156

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 74  DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 133

Query: 293 GKNYTIRITDRINFDQKSLK 312
            + + IR+TD I   ++  K
Sbjct: 134 NEKFGIRLTDIITPSERIRK 153


>gi|218461631|ref|ZP_03501722.1| flagellar C-ring motor switch protein [Rhizobium etli Kim 5]
          Length = 98

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV ++Y  C+ G  +
Sbjct: 12 AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71

Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIG 98
          H+I     N     A+L +WS N  + 
Sbjct: 72 HLIDDLSANVTLVDATLRNWSQNVTLA 98


>gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
 gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
          Length = 124

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 31/77 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   + + +   +   + T+K+++ LK G VI           L  N   +   E+  +
Sbjct: 45  KRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGEVVVI 104

Query: 293 GKNYTIRITDRINFDQK 309
              + +RI      +++
Sbjct: 105 NDAFGVRINSLAAVEEE 121


>gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 173

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   I  K   +++++ L    VI           L  NG  +   EL +V  
Sbjct: 89  LLDIPITITVEIGSKSMPIEEILKLAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQVDD 148

Query: 295 NYTIRITDRINFDQKS 310
           N+ I+IT+ +  +++ 
Sbjct: 149 NFAIKITEILTKEERV 164


>gi|74317626|ref|YP_315366.1| flagellar motor switch/type III secretory pathway protein FliN
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057121|gb|AAZ97561.1| flagellar motor switch/type III secretory pathway protein FliN
           [Thiobacillus denitrificans ATCC 25259]
          Length = 132

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 52  ILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 111

Query: 295 NYTIRITDRINFDQKSLK 312
            + +R+TD I   ++  K
Sbjct: 112 KFGVRLTDIITPAERIRK 129


>gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC1989]
 gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC1989]
          Length = 150

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 219 KSENQSEDLIDPFA---RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           +  +         +        + V I   +     T+++++ L  G VI          
Sbjct: 52  EEFDNDPTAGKAISPELDLILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPL 111

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            +  NG  I   E+  V + + IR+TD I+  ++  K
Sbjct: 112 NVLVNGTLIAHGEVVVVNEKFGIRMTDVISPAERIKK 148


>gi|42524696|ref|NP_970076.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
           HD100]
 gi|39576906|emb|CAE78135.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
           HD100]
          Length = 122

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  + +++ L  G VI           +  N K I   E   V +
Sbjct: 43  ILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAVVVNE 102

Query: 295 NYTIRITDRINFDQKS 310
            + +R+TD I+  ++ 
Sbjct: 103 KFGVRLTDIISPAERV 118


>gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 250

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P+    +    +          + +      +  Y + + +   I   K  + DV+ L  
Sbjct: 137 PKSAPAEEAKAAPEGPITQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSP 196

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           G VI       + A +  NG+ I   E+  V + Y IRIT+ ++   
Sbjct: 197 GSVIELDRSAGSAADVMVNGRLIARGEIVVVDEEYGIRITEIVSLAD 243


>gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
           19865]
 gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
           19865]
          Length = 112

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 34/91 (37%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
              +  +  D        + V +   +   +  +++++ L  G V+           +  
Sbjct: 18  QPERDLNATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           NG  I   E+  +   + IR+TD ++  ++ 
Sbjct: 78  NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108


>gi|119469994|ref|ZP_01612799.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
 gi|119446704|gb|EAW27977.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
          Length = 132

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                ++    + +           + V I   +   K  +++++ L  G V+       
Sbjct: 32  LDELSDEKSEITGEEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAG 90

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 91  EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130


>gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp]
 gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
          Length = 155

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +     T+++++ L  G VI           +  NG  I   E+  V +
Sbjct: 76  ILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 136 KFGIRLTDVISPSERIKK 153


>gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans
           BC]
 gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
           BC]
          Length = 151

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 70  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 129

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD +   ++ 
Sbjct: 130 KFGIRLTDVVTPSERL 145


>gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 377

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 38/104 (36%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
            +   +S       + + E            + + I   +   +  +++++    G +I 
Sbjct: 274 ERVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGSIIE 333

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                     +  NGK I   E+  + +++ +RITD +N   + 
Sbjct: 334 LDKLAGEPVDILVNGKVIAKGEVVVIDESFGVRITDIVNPSNRL 377



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 65/206 (31%), Gaps = 7/206 (3%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFS 84
                 + +   +G +            ++  V I+       K+  +   F        
Sbjct: 25  AISDQDKDVLGEIGNISMGTAATTLSILLNQKVSITTPIVSVLKWDELPKEFPVPYVAIK 84

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQI 142
                       +      V  + + ++G S   E   +L    LS +++    + +   
Sbjct: 85  VVYKEGLDGVNLLVLKKEDVEIIADLMMGGSGSIEFSEELSELQLSAIQEA-MNQMVGSA 143

Query: 143 SAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVL 199
           S  L+  ++   + SP       +  +  +      S + +  +   MTI + + S  + 
Sbjct: 144 STSLSSMLNLKIDISPPEAFVIDFAQNAEEMIPELKSADEIVKVAFRMTIGDLIDSQIMQ 203

Query: 200 IIPQETLLKTTLISLSSQNKSENQSE 225
           +IP +   +     L+S   + +  E
Sbjct: 204 LIPVDFAKQLVNAMLNSTLSTSSVQE 229


>gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC2047]
          Length = 132

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +     T+++++ L  G VI           +  NG  I   E+  V +
Sbjct: 53  ILDIPVTVSMEVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGEVVVVNE 112

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD ++  ++  K
Sbjct: 113 KFGIRLTDVVSPSERIQK 130


>gi|157961197|ref|YP_001501231.1| flagellar motor switch protein [Shewanella pealeana ATCC 700345]
 gi|157846197|gb|ABV86696.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
          Length = 126

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%)

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
            + ++ + +   + L   N       +           + V I   +      +++++ L
Sbjct: 12  AMAEQAIEEAKAVELDEFNSDGAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQL 71

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 72  NQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 124


>gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
 gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
          Length = 395

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 36/75 (48%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + ++  +   K ++KD++ L  G ++           +  NGK +   E+  + +
Sbjct: 316 ILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 375

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ ++  ++
Sbjct: 376 NFGVRITEIVSPLER 390


>gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 399

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 36/75 (48%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + ++  +   K ++KD++ L  G ++           +  NGK +   E+  + +
Sbjct: 320 ILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 379

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ ++  ++
Sbjct: 380 NFGVRITEIVSPLER 394


>gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 148

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 67  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 126

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD +   ++ 
Sbjct: 127 KFGIRLTDVVTPSERL 142


>gi|229591842|ref|YP_002873961.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
 gi|229363708|emb|CAY51093.1| probable flagellar motor switch protein [Pseudomonas fluorescens
           SBW25]
          Length = 155

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 76  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 136 KFGIRLTDVISPSERIKK 153


>gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
           51333]
 gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
           51333]
          Length = 250

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
            +          +S    E   +      Y + + +   I   K  + DV+ L  G VI 
Sbjct: 143 EEAKTAPEGPITQSTATPEQRAESMK-LLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 201

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                 + A +  NG+ I   E+  V + Y IRIT+ ++   
Sbjct: 202 LDRSAGSAADVMVNGRLIARGEIVVVDEEYGIRITEIVSLAD 243


>gi|253998476|ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
 gi|313200551|ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688]
 gi|253985155|gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
 gi|312439867|gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688]
          Length = 145

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 65  ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 124

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I   ++  K
Sbjct: 125 KFGIRLTDIITPAERIRK 142


>gi|300693351|ref|YP_003749324.1| flagellar motor switching and energizing component. flin/mopa/spao
           family [Ralstonia solanacearum PSI07]
 gi|299075388|emb|CBJ34683.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum PSI07]
          Length = 169

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           + S+  S    +        + V +   +   K  +K+++ L  G V+           +
Sbjct: 73  DDSKKPSPTQRNDI-DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDV 131

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             NG  I   E+  V + + IR+TD I   ++  K
Sbjct: 132 LVNGYLIAQGEVVVVNEKFGIRLTDIITPSERIRK 166


>gi|104782810|ref|YP_609308.1| flagellar motor switch protein [Pseudomonas entomophila L48]
 gi|95111797|emb|CAK16521.1| flagellar motor switch protein FliN [Pseudomonas entomophila L48]
          Length = 154

 Score = 76.2 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 1/147 (0%)

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSE 225
           +        L++E+   +             +L           L       +   N++ 
Sbjct: 6   EISSPEEQALADEWAAALEETGDAGQADIDALLGGDAGHAGGDRLPMEEFASSPKLNENV 65

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
            L  P       + V+I   +   +  +++++ L  G VI           +  NG  I 
Sbjct: 66  SLEGPNLDVILDIPVSISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 125

Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312
             E+  V + + IR+TD I+  ++  K
Sbjct: 126 HGEVVVVNEKFGIRLTDVISPSERIKK 152


>gi|70729041|ref|YP_258775.1| flagellar motor switch protein [Pseudomonas fluorescens Pf-5]
 gi|68343340|gb|AAY90946.1| flagellar motor switch protein FliN [Pseudomonas fluorescens Pf-5]
          Length = 153

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +      +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 74  ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 133

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 134 KFGIRLTDVISPSERIKK 151


>gi|119775424|ref|YP_928164.1| flagellar motor switch protein [Shewanella amazonensis SB2B]
 gi|119767924|gb|ABM00495.1| flagellar motor switch protein FliN [Shewanella amazonensis SB2B]
          Length = 124

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +++++  S +           + V I   +     ++++++ L  G V+           
Sbjct: 28  KDETKPLSSEEAAKL-DAILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLD 86

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 87  VMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122


>gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
 gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
 gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
 gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
 gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
 gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
          Length = 144

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 63  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 122

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD +   ++ 
Sbjct: 123 KFGIRLTDVVTPSERL 138


>gi|330826723|ref|YP_004390026.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
           K601]
 gi|329312095|gb|AEB86510.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
           K601]
          Length = 151

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 70  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 129

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD +   ++ 
Sbjct: 130 KFGIRLTDVVTPSERL 145


>gi|27365288|ref|NP_760816.1| flagellar motor switch protein [Vibrio vulnificus CMCP6]
 gi|37680657|ref|NP_935266.1| flagellar motor switch protein [Vibrio vulnificus YJ016]
 gi|320155672|ref|YP_004188051.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
 gi|27361435|gb|AAO10343.1| Flagellar motor switch protein fliN [Vibrio vulnificus CMCP6]
 gi|37199406|dbj|BAC95237.1| polar flagellar switch protein FliN [Vibrio vulnificus YJ016]
 gi|319930984|gb|ADV85848.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
          Length = 136

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P+  + +     L     +                 + V I   +   + ++++++ L  
Sbjct: 24  PEIDVDEVLAAPLEELKDTSAPITADERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|91785620|ref|YP_560826.1| flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
 gi|91689574|gb|ABE32774.1| Flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
          Length = 154

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 72  DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 132 NDKFGIRLTDIITPSERIRK 151


>gi|327481258|gb|AEA84568.1| flagellar motor switch protein [Pseudomonas stutzeri DSM 4166]
          Length = 160

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 35/78 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +   + ++++++ L  G V+           +  NG  I   E+  V +
Sbjct: 81  ILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVVVVNE 140

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 141 KFGIRLTDVISPTERIKK 158


>gi|90406811|ref|ZP_01215003.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
 gi|90312048|gb|EAS40141.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
          Length = 129

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 33/80 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V I   +   +  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 48  DSIMDIPVTISMEVGRSRINIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVV 107

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I+ +++  K
Sbjct: 108 NDKFGIRLTDVISQNERIRK 127


>gi|167623387|ref|YP_001673681.1| flagellar motor switch protein [Shewanella halifaxensis HAW-EB4]
 gi|167353409|gb|ABZ76022.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
          Length = 125

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
               N+S   SED +         + V I   +      +++++ L  G V+        
Sbjct: 26  DEFSNESAPLSEDEVSKL-DAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRIAGE 84

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
              +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 85  PLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 123


>gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4]
          Length = 392

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 34/97 (35%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             +     Q  +     +           + + +   +     ++K+++    G +I   
Sbjct: 296 VNVQPAQFQAFTGAVPGNFQPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELN 355

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                   +  NGK +   E+  + ++Y IRIT+ I 
Sbjct: 356 RIAGEPIDVLVNGKFVAKGEVVVIEESYGIRITEIIK 392



 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 67/211 (31%), Gaps = 8/211 (3%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASL 88
             +     +  +            ++  V+IS        +S I  ++++  VF   A  
Sbjct: 31  QEKDAIGEISNISMGTAATTLFSLVNRKVEISTPVVAFANWSDICDAYEKPCVFIRIAYT 90

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +    + V  + + ++G               +   +   + +   +  L+ 
Sbjct: 91  VGLDGSNILVLKEHDVKVITDLMMGGDGTNTDGELGELHLSAISEAMNQMMGSAATSLSS 150

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV----TTINMNMTIEN-VASSFVLIIPQ 203
            ++   + SP   D  D+   +       +EF+      I+  + I + V S  + + P 
Sbjct: 151 MLNKVIDISPPSADLIDLQ--QTIDESQIDEFLAGEFVKISFRLEIGDLVDSEIMQLYPV 208

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
               +      S+  +  N +  + +    +
Sbjct: 209 SFAKEMCANVTSNMEEDSNSTAGMSEKENTQ 239


>gi|309779461|ref|ZP_07674222.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
 gi|308921702|gb|EFP67338.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
          Length = 151

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 46/144 (31%)

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228
              N    +++    + M   +   A+      P          S   +  + +      
Sbjct: 5   PTMNPEANADDIDVEMTMEEAMALEAAQRAAANPPAAAPAAAESSPVFKPLTADGLGGAQ 64

Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
                    + V +   +   K  +K+++ L  G V+           +  NG  I   E
Sbjct: 65  RNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGE 124

Query: 289 LGRVGKNYTIRITDRINFDQKSLK 312
           +  V + + IR+TD I   ++  K
Sbjct: 125 VVVVNEKFGIRLTDIITPSERIRK 148


>gi|260776476|ref|ZP_05885371.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607699|gb|EEX33964.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 136

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 41/111 (36%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P+  + +     L     + +   +           + V I   +   + ++++++ L  
Sbjct: 24  PEVDVDEVMAAQLDELQDTGSPISEDERRKLDTILDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
           L1-82]
 gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
           L1-82]
 gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1]
          Length = 392

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 34/97 (35%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             +     Q  +     +           + + +   +     ++K+++    G +I   
Sbjct: 296 VNVQPAQFQAFTGAVPGNFQPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELN 355

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                   +  NGK +   E+  + ++Y IRIT+ I 
Sbjct: 356 RIAGEPIDVLVNGKFVAKGEVVVIEESYGIRITEIIK 392



 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 66/211 (31%), Gaps = 8/211 (3%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASL 88
             +     +  +            ++  V+IS        +S I  ++++  VF   A  
Sbjct: 31  QEKDAIGEISNISMGTAATTLFSLVNRKVEISTPVVAFANWSDICDAYEKPCVFIRIAYT 90

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +    + V  + + ++G               +   +   + +   +  L+ 
Sbjct: 91  VGLDGSNILVLKEHDVKVITDLMMGGDGTNTDGELGELHLSAISEAMNQMMGSAATSLSS 150

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV----TTINMNMTIEN-VASSFVLIIPQ 203
            +    + SP   D  D+   +       +EF+      I+  + I + V S  + + P 
Sbjct: 151 MLDKVIDISPPSADLIDLQ--QTIDESQIDEFLAGEFVKISFRLEIGDLVDSEIMQLYPV 208

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
               +      S+  +  N +  + +    +
Sbjct: 209 SFAKEMCANVTSNMEEDSNSTAGMSEKENTQ 239


>gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 194

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                        E  S ++++        + + I   +  K  ++++++ L    VI  
Sbjct: 84  PLKESEKKESFTKEEFSPEILNKL-DILLDIPITITVEVGSKSMSIEEILKLAPSSVIDL 142

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                    L  NG  +   EL +V  N+ I+IT+ +  +++ 
Sbjct: 143 DKYLNEPIDLKVNGVLVAKGELYQVDDNFAIKITEILTKEERV 185


>gi|296157440|ref|ZP_06840275.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
 gi|295892212|gb|EFG71995.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
          Length = 154

 Score = 75.8 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 72  DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 132 NDKFGIRLTDIITPSERIRK 151


>gi|254506934|ref|ZP_05119073.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
           16]
 gi|323491453|ref|ZP_08096637.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
 gi|323496547|ref|ZP_08101601.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
 gi|219550219|gb|EED27205.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
           16]
 gi|323314322|gb|EGA67402.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
 gi|323318391|gb|EGA71348.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
          Length = 136

 Score = 75.8 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 41/111 (36%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P+  + +     L     + +   D           + V I   +   + ++++++ L  
Sbjct: 24  PEIDVDEVMSAQLDELEDTSSPISDDERRKLDTILDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|207728360|ref|YP_002256754.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
 gi|206591606|emb|CAQ57218.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
          Length = 154

 Score = 75.8 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 72  DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKS 310
            + + IR+TD I   ++ 
Sbjct: 132 NEKFGIRLTDIITPSERI 149


>gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
           43541]
 gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
           43541]
          Length = 393

 Score = 75.8 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 36/75 (48%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + ++  +   K ++KD++ L  G ++           +  NGK +   E+  + +
Sbjct: 314 ILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 373

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ ++  ++
Sbjct: 374 NFGVRITEIVSPLER 388


>gi|94987083|ref|YP_595016.1| flagellar motor switch/type III secretory pathway protein [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731332|emb|CAJ54695.1| Flagellar motor switch/type III secretory pathway protein [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 164

 Score = 75.8 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   +   +  + +++ L  G V+           +  NGK +   E   + +
Sbjct: 85  ILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVARGEAVVINE 144

Query: 295 NYTIRITDRINFDQKS 310
            + +R+TD I+  ++ 
Sbjct: 145 KFGVRLTDIISPIERV 160


>gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 250

 Score = 75.8 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
               + +      +  Y + + +   I   K  + DV+ L  G VI       + A +  
Sbjct: 155 QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMV 214

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           NG+ I   E+  V + Y IRIT+ ++   
Sbjct: 215 NGRLIARGEIVVVDEEYGIRITEIVSLAD 243


>gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
           43063]
 gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
           43063]
          Length = 250

 Score = 75.8 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
               + +      +  Y + + +   I   K  + DV+ L  G VI       + A +  
Sbjct: 155 QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMV 214

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           NG+ I   E+  V + Y IRIT+ ++   
Sbjct: 215 NGRLIARGEIVVVDEEYGIRITEIVSLAD 243


>gi|15642124|ref|NP_231756.1| flagellar motor switch protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121727203|ref|ZP_01680370.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
 gi|153213272|ref|ZP_01948684.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
 gi|153803022|ref|ZP_01957608.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
 gi|153818985|ref|ZP_01971652.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
 gi|153822883|ref|ZP_01975550.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|153828628|ref|ZP_01981295.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
 gi|227082250|ref|YP_002810801.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
 gi|254291361|ref|ZP_04962154.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
 gi|254849210|ref|ZP_05238560.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
 gi|297582023|ref|ZP_06943942.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
 gi|298497853|ref|ZP_07007660.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
 gi|9656675|gb|AAF95270.1| flagellar motor switch protein FliN [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121630448|gb|EAX62841.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
 gi|124116072|gb|EAY34892.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
 gi|124121420|gb|EAY40163.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
 gi|126510480|gb|EAZ73074.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
 gi|126519579|gb|EAZ76802.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|148875899|gb|EDL74034.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
 gi|150422691|gb|EDN14645.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
 gi|227010138|gb|ACP06350.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
 gi|254844915|gb|EET23329.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
 gi|297533718|gb|EFH72560.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
 gi|297542186|gb|EFH78236.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
          Length = 138

 Score = 75.8 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     +     D           + V I   +   K ++++++ L  
Sbjct: 26  PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 85

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 86  GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 136


>gi|258621112|ref|ZP_05716146.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
 gi|261209861|ref|ZP_05924162.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
 gi|262166226|ref|ZP_06033963.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
 gi|262170888|ref|ZP_06038566.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
 gi|258586500|gb|EEW11215.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
 gi|260841047|gb|EEX67572.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
 gi|261891964|gb|EEY37950.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
 gi|262025942|gb|EEY44610.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
          Length = 136

 Score = 75.8 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     +     D           + V I   +   K ++++++ L  
Sbjct: 24  PDIDVDEILAAPLEELKNTAPPISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|83747641|ref|ZP_00944677.1| FliN [Ralstonia solanacearum UW551]
 gi|207739722|ref|YP_002258115.1| flagellar motor switch protein flin [Ralstonia solanacearum
           IPO1609]
 gi|83725693|gb|EAP72835.1| FliN [Ralstonia solanacearum UW551]
 gi|206593104|emb|CAQ60010.1| flagellar motor switch protein flin [Ralstonia solanacearum
           IPO1609]
          Length = 154

 Score = 75.8 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 72  DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKSLK 312
            + + IR+TD I   ++  K
Sbjct: 132 NEKFGIRLTDIITPSERIRK 151


>gi|299068764|emb|CBJ40004.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum CMR15]
          Length = 158

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 76  DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 135

Query: 293 GKNYTIRITDRINFDQKSLK 312
            + + IR+TD I   ++  K
Sbjct: 136 NEKFGIRLTDIITPSERIRK 155


>gi|307731350|ref|YP_003908574.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
 gi|307585885|gb|ADN59283.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
          Length = 155

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 73  DMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 132

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I   ++  K
Sbjct: 133 NDKFGIRLTDIITPSERIRK 152


>gi|121586780|ref|ZP_01676562.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
 gi|153825567|ref|ZP_01978234.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
 gi|229507790|ref|ZP_04397295.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
 gi|229511973|ref|ZP_04401452.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|229513776|ref|ZP_04403238.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
 gi|229519109|ref|ZP_04408552.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
 gi|229522078|ref|ZP_04411495.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
 gi|229524127|ref|ZP_04413532.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
           VL426]
 gi|229528863|ref|ZP_04418253.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
 gi|229607335|ref|YP_002877983.1| flagellar motor switch protein [Vibrio cholerae MJ-1236]
 gi|255745136|ref|ZP_05419085.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
 gi|262153474|ref|ZP_06028604.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
 gi|262191374|ref|ZP_06049564.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
 gi|121548947|gb|EAX58986.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
 gi|149740718|gb|EDM54817.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
 gi|229332637|gb|EEN98123.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
 gi|229337708|gb|EEO02725.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
           VL426]
 gi|229341003|gb|EEO06008.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
 gi|229343798|gb|EEO08773.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
 gi|229348957|gb|EEO13914.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
 gi|229351938|gb|EEO16879.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|229355295|gb|EEO20216.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
 gi|229369990|gb|ACQ60413.1| flagellar motor switch protein FliN [Vibrio cholerae MJ-1236]
 gi|255736966|gb|EET92362.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
 gi|262030711|gb|EEY49345.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
 gi|262032749|gb|EEY51297.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
 gi|327484653|gb|AEA79060.1| Flagellar motor switch protein FliN [Vibrio cholerae LMA3894-4]
          Length = 136

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     +     D           + V I   +   K ++++++ L  
Sbjct: 24  PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetohalobium arabaticum DSM 5501]
 gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetohalobium arabaticum DSM 5501]
          Length = 408

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 40/106 (37%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
            ++  +     ++      +           + + +  R+   K  +KD++ L  G VI 
Sbjct: 302 EESVDVQSVEFSQLGEGQTEQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELGNGSVIE 361

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                     L  NGK I   E+  + +N+  R+TD ++  ++   
Sbjct: 362 LDKLAGESVDLLVNGKLIAKGEVVVIDENFGFRVTDIVSPMERITN 407



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 61/203 (30%), Gaps = 4/203 (1%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90
           +     +G +            +D  V+I+    +   F  +I  ++   V      +  
Sbjct: 48  KDAIGEIGNISMGSAATALYSLLDETVEITAPEVELVTFQKLIQEYERPCVVVDVEYIEG 107

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
              +  +         + + ++G          N    +   +   + +   S  ++  +
Sbjct: 108 LEGSNLLIIEQQDAAIISDLMMGGDGNNPDAELNELHLSAVSEAMNQMMGSASTSMSTIM 167

Query: 151 S-TTQESSPNLEDFYDIDYLK-KNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLL 207
                  SP   +   ++  + K+ +   ++ V  ++ ++TI  V  S  + ++P +   
Sbjct: 168 QGDKVNISPPNAELLTLNTDEIKSRSFQPDDEVVKVSFDLTIGEVIDSEILQLMPLDFAK 227

Query: 208 KTTLISLSSQNKSENQSEDLIDP 230
           +              +       
Sbjct: 228 ELVAYLTDPDPSERAEEPQESGE 250


>gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
 gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
          Length = 288

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 94/287 (32%), Gaps = 20/287 (6%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
           ++S L  + K  L    ++ +     +   S +  K    +    E     +  +   SS
Sbjct: 1   MASDLSNILKSELANTLEQLLSKKTKVD--SVEKFKNDTNLTQLIE--CNVKLDMKGLSS 56

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL-NQCIST 152
                            +LG   E    + +   +    ++        S ++  Q +S 
Sbjct: 57  RIHFYIPAVSATKFEYLMLGGMGELKETIDD-ETTDAVNEIVSNICGSFSTLVNAQGLSD 115

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN------------MTIENVASSFVLI 200
                  ++    ++    +    + EF  +++              +   +  +     
Sbjct: 116 VGSIKSEIKSTIKVENSVLSAKDDAYEFTISLDDEKYRLMVVFDKLLLPYFSAITGIYQE 175

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
            P+  ++ +  +S ++ + + + +    +      Y + + +  R+  K   LKD++   
Sbjct: 176 EPKVQVVPSAPVSNNTGSSNSSVTPTSKNL--ELLYNVKLKLSVRLGTKIVLLKDILRWD 233

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +G++I           +  NG +I   E   V   + ++I   IN D
Sbjct: 234 VGEIIELEQMVNEPLEILINGVKIGEGEAVIVEGKFGLKIKRIINED 280


>gi|332140590|ref|YP_004426328.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550612|gb|AEA97330.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 135

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 1/106 (0%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
               +  L         +++           + V I   +   + ++++++ L  G V+ 
Sbjct: 29  EDVQVAELDELTDDAPITQEEKKKL-DTILDIPVTISMEVGRSQISIRNLLQLNQGSVVE 87

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                     +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 88  LDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 133


>gi|261252330|ref|ZP_05944903.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
 gi|260935721|gb|EEX91710.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
          Length = 136

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 40/111 (36%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     + +   +           + V I   +   + ++++++ L  
Sbjct: 24  PSIDVDEVMNAQLDELEDTSSPISEDERRKLDTILDIPVTISMEVGRSQISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|170725981|ref|YP_001760007.1| flagellar motor switch protein [Shewanella woodyi ATCC 51908]
 gi|169811328|gb|ACA85912.1| flagellar motor switch protein FliN [Shewanella woodyi ATCC 51908]
          Length = 129

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V I   +      +++++ L  G V+           +  NG  I   E+  V
Sbjct: 48  DAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVV 107

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I+  ++  K
Sbjct: 108 NDKFGIRLTDVISQTERIKK 127


>gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
 gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
          Length = 148

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 9/104 (8%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                 S S++    + +             + V +   +   K  +K ++ L  G V+ 
Sbjct: 48  EPVRPFSSSNEAPVNDINM---------VLDIPVQLSVELGRTKVPIKYILQLAQGSVVE 98

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                     +  NG  I   E+  V   + IR+TD +   ++ 
Sbjct: 99  LDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERL 142


>gi|262404471|ref|ZP_06081026.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
 gi|262349503|gb|EEY98641.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
          Length = 136

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   + +     L     +     D           + V I   +   K ++++++ L  
Sbjct: 24  PDIDVDEILAAPLEELKNTAPAISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134


>gi|241763647|ref|ZP_04761697.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
 gi|241367122|gb|EER61488.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
          Length = 145

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 64  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 123

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD +   ++ 
Sbjct: 124 KFGIRLTDVVTPSERL 139


>gi|89072282|ref|ZP_01158861.1| putative flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89051814|gb|EAR57266.1| putative flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 257

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 91/287 (31%), Gaps = 44/287 (15%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDL--------DVDISYTSCQSGKFSHIIHSFKENFV 82
           + K    +       L        D         ++ +S TS              ++  
Sbjct: 6   LGKPIHIIKDELANILSDSLLGLTDQIQKWVKTHELTMSVTSIDFQSPKQ-----GQHTA 60

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
           F+ A            CS  L+I L +    +    +  + ++ ++  + +L +R     
Sbjct: 61  FTVAHNDG--GMMNFRCSAPLLIALADRFYHSPVNRLNSVKSQVITKSDLRLQERIGQLF 118

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
           SA +                    +  +   + LS++    I +++T E      ++ I 
Sbjct: 119 SAQVAP-----------------EEMWQACDSSLSDDIGLVIQLSVTCEETIGDIIICID 161

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
              +   T +           + +L   F+++     V ++T +  K+  L  V+ LK G
Sbjct: 162 SALIQTLTSVIG------LQPTSELNALFSQQLESTKVKLNTVLCEKQMPLDQVLQLKPG 215

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +      + +   +S   + +++  +        +     IN  + 
Sbjct: 216 DIFDIDLMQSS--TISIGQEYLFNGHVAEQNGQLVL----IINTSKD 256


>gi|312173312|emb|CBX81567.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
           BAA-2158]
          Length = 93

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 11  NLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 70

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IRITD I   ++  +
Sbjct: 71  SDKFGIRITDIITPSERMHR 90


>gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
 gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
          Length = 238

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             L S      + +Q            Y + + +   I   +  ++ V+ L  G V+   
Sbjct: 134 LRLRSPKVATPTTSQVPTPRANLRM-LYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELD 192

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               + A +  NG+ +   E+  V + Y IR+T+ +  + 
Sbjct: 193 RTAGSPADVLVNGRLVARGEVVVVDEVYGIRVTEIVAGND 232


>gi|82702482|ref|YP_412048.1| surface presentation of antigens (SPOA) protein [Nitrosospira
           multiformis ATCC 25196]
 gi|82410547|gb|ABB74656.1| Surface presentation of antigens (SPOA) protein [Nitrosospira
           multiformis ATCC 25196]
          Length = 151

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +  ++   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 69  DLVMDIPVQLTVQLGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 128

Query: 293 GKNYTIRITDRINFDQKSLK 312
            + + IR+TD I   ++  K
Sbjct: 129 NEKFGIRLTDIITPSERIRK 148


>gi|113969633|ref|YP_733426.1| flagellar motor switch protein [Shewanella sp. MR-4]
 gi|114046863|ref|YP_737413.1| flagellar motor switch protein [Shewanella sp. MR-7]
 gi|113884317|gb|ABI38369.1| flagellar motor switch protein FliN [Shewanella sp. MR-4]
 gi|113888305|gb|ABI42356.1| flagellar motor switch protein FliN [Shewanella sp. MR-7]
          Length = 124

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                + S+  S+            + V I   +     ++++++ L  G V+       
Sbjct: 24  LDELVDDSQPISKAEAAKL-DTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAG 82

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 83  EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122


>gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium
           HP15]
          Length = 163

 Score = 75.4 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 83  ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 142

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 143 KFGIRLTDVISPGERI 158


>gi|295696125|ref|YP_003589363.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           tusciae DSM 2912]
 gi|295411727|gb|ADG06219.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           tusciae DSM 2912]
          Length = 395

 Score = 75.4 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 34/78 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                +++ +   +     ++++V++  +G V+           +  N K I   E+  +
Sbjct: 311 DLLLDVSLTVSVELGRTHQSVREVLSWSLGSVVELDRLAGEPVDIYVNQKLIAKGEVVVI 370

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +R+TD ++   + 
Sbjct: 371 DENFGVRVTDIVHPRDRM 388


>gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
 gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
          Length = 130

 Score = 75.4 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   + V +   I   + T+ + + L+ G ++           L  NG  I   E+  + 
Sbjct: 28  RLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEVVVID 87

Query: 294 KNYTIRITDRIN 305
           + + +RITD + 
Sbjct: 88  EEFGLRITDVLG 99


>gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65]
 gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65]
          Length = 185

 Score = 75.4 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +   +  +++++ L  G VI           +  NG  I   E+  V  
Sbjct: 106 ILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVND 165

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 166 KFGIRLTDVISQAERIQK 183


>gi|332524238|ref|ZP_08400464.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
 gi|332107573|gb|EGJ08797.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
          Length = 144

 Score = 75.4 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 63  ILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 122

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD +   ++ 
Sbjct: 123 KFGIRLTDIVTPSERM 138


>gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens
           16/4]
          Length = 394

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           +        + +PQ T     +            S             + +++   +   
Sbjct: 281 MAGQQMPPYMYMPQPT---INVQPAQFTPFGPGFSAQFAQENIDLILDVPLDVTVELGRT 337

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             T++D++    G +I           +  NGK +   E+  + +++ +RIT+ I  
Sbjct: 338 NKTIQDILDFAPGTIIELNKIAGEPIDVLVNGKYVAKGEVVVIEESFGVRITEIIKE 394


>gi|302878291|ref|YP_003846855.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
           ES-2]
 gi|302581080|gb|ADL55091.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
           ES-2]
          Length = 148

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 66  DMILDIPVQLTVELGRTKMPIKNLLQLAQGSVVELSGMAGEPLDVMINGFLIAQGEVVVV 125

Query: 293 GKNYTIRITDRINFDQKS 310
                IR+TD     ++ 
Sbjct: 126 NDKLGIRLTDITTPSERL 143


>gi|127512305|ref|YP_001093502.1| flagellar motor switch protein [Shewanella loihica PV-4]
 gi|126637600|gb|ABO23243.1| flagellar motor switch protein FliN [Shewanella loihica PV-4]
          Length = 127

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%)

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
           E+    +   + ++ L +   + L     S     +           + V I   +    
Sbjct: 4   EDTGDDWAAAMAEQALEEAQAVELDELADSSKPLTEEEAAKLDTIMDIPVTISMEVGRSF 63

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +++++ L  G V+           +  NG  I   E+  V   + IR+TD I+  ++ 
Sbjct: 64  INIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI 123

Query: 311 LK 312
            K
Sbjct: 124 KK 125


>gi|120598258|ref|YP_962832.1| flagellar motor switch protein [Shewanella sp. W3-18-1]
 gi|146293664|ref|YP_001184088.1| flagellar motor switch protein [Shewanella putrefaciens CN-32]
 gi|120558351|gb|ABM24278.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
 gi|145565354|gb|ABP76289.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
 gi|319427063|gb|ADV55137.1| flagellar motor switch protein FliN [Shewanella putrefaciens 200]
          Length = 127

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 1/110 (0%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           Q       +      + S+  S+            + V I   +     ++++++ L  G
Sbjct: 17  QALEEANAVALDELVDDSQPISKADAAKL-DTILDIPVTISMEVGRSFISIRNLLQLNQG 75

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 76  SVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125


>gi|187926921|ref|YP_001893266.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
 gi|241665250|ref|YP_002983609.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
 gi|187728675|gb|ACD29839.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
 gi|240867277|gb|ACS64937.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
          Length = 150

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +K+++ L  G V+           +  NG  I   E+  V
Sbjct: 68  DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 127

Query: 293 GKNYTIRITDRINFDQKSLK 312
            + + IR+TD I   ++  K
Sbjct: 128 NEKFGIRLTDIITPSERIRK 147


>gi|109899344|ref|YP_662599.1| flagellar motor switch protein [Pseudoalteromonas atlantica T6c]
 gi|109701625|gb|ABG41545.1| flagellar motor switch protein FliN [Pseudoalteromonas atlantica
           T6c]
          Length = 131

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 1/95 (1%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            + +  S             + V I   +     ++++++ L  G V+           +
Sbjct: 36  EEDKEISPAEKRKL-DTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDV 94

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 95  LVNGTLIAHGEVVVVNDKFGIRLTDVISQLERIKK 129


>gi|85060032|ref|YP_455734.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
 gi|84780552|dbj|BAE75329.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
          Length = 132

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V
Sbjct: 51  DLIMDIPVKMTVELGRTKMTIKELLRLAQGSVVALDGLAGEPLDILINGYLIAQGEV-VV 109

Query: 293 GKNYTIRITDRINFDQKS 310
              Y +RIT  I   ++ 
Sbjct: 110 ADKYGVRITSIITPSERM 127


>gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
           2876]
 gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
           2876]
          Length = 426

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 8/73 (10%), Positives = 30/73 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +     ++K+++    G ++           +  NGK +   E+  +
Sbjct: 354 DLIMDVPLEVTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEVVVI 413

Query: 293 GKNYTIRITDRIN 305
            +++ ++IT+ + 
Sbjct: 414 EESFGVKITEIVK 426



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 57/190 (30%), Gaps = 13/190 (6%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
           G+       +     +  +            ++  V+I+        +  +  S+ +  V
Sbjct: 34  GEETLTDEQKDAIGEISNISMGTAATTLSTLLNQTVNITTPKVTYMNWQELADSYDKPCV 93

Query: 83  -FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
               +  S    N  +      V  + + ++G       +       +   +   + +  
Sbjct: 94  FLQISYTSGLDGNNVLVLKERDVKIITDLMMGGPGNVSDEPIGELHLSAIGEAMNQMMGS 153

Query: 142 ISAVLNQCISTTQESSPNLEDFYDID------YLKKNTNRLSNEFVTTINMNMTIEN-VA 194
            +  ++  +    + SP + +  D++        +    R        ++  MTI   + 
Sbjct: 154 AATSMSSMLGKKIDISPPIANLVDLNDNNKKDIPEFLQKRF-----VKVSFRMTIGTLID 208

Query: 195 SSFVLIIPQE 204
           S  + + P +
Sbjct: 209 SEIMQLYPFD 218


>gi|218288307|ref|ZP_03492606.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241666|gb|EED08839.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 381

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                     +  +    +   +   Y + +N+   +   K  +++++ L  G ++    
Sbjct: 278 RPAFPDFDEGATPRDARPVANLS-LLYDVPLNVTVELGRAKKLIREILELAPGSILELDK 336

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                  +  N K+I   E+  + +N+ +R+TD +  D++ 
Sbjct: 337 LAGEPVDIYVNQKKIAIGEVVVIDENFGVRVTDIVQADKRI 377



 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 55/219 (25%), Gaps = 5/219 (2%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
                +   +G +            +   VDI+         S +   F   +V  Q   
Sbjct: 36  ADEIDVLGEIGNICFGSAATSLSSLLGRRVDITTPVVSIIPRSEVESRFPTPYVLVQVDF 95

Query: 89  -SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                    +         + + ++G               +   +   + +   +  ++
Sbjct: 96  TEGLQGTNALAIEIEDARRIADLMMGREPSESTGELGELELSAVGEAMNQMMGSAATAMS 155

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL 206
           Q        SP           +        E +  +   + +   + S  + ++P    
Sbjct: 156 QLFGRYINISPPSVRVVTFTPDEAQAAFGLAEELVNVEFRLHVHELIDSHIMQLMPIPFA 215

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
                +  S Q  ++  + +  +   R+     V+    
Sbjct: 216 ---RELVRSMQVHTDAIAPEPREGDERRDGDAPVSAGAE 251


>gi|285018172|ref|YP_003375883.1| flagellar motor switch/type III secretory pathway protein flin
           [Xanthomonas albilineans GPE PC73]
 gi|283473390|emb|CBA15895.1| probable flagellar motor switch/type III secretory pathway protein
           flin [Xanthomonas albilineans]
          Length = 112

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   +  +++++ L  G V+           +  NG  I   E+  +  
Sbjct: 33  ILDVPITLSLEVGRSRIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVTIND 92

Query: 295 NYTIRITDRINFDQKS 310
            + +R+TD ++  ++ 
Sbjct: 93  RFGVRLTDVVSPSERI 108


>gi|332994113|gb|AEF04168.1| flagellar motor switch protein [Alteromonas sp. SN2]
          Length = 133

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
                 +++           + V I   +   + ++++++ L  G V+           +
Sbjct: 38  TDDTPITQEEKKKL-DTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDV 96

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 97  LVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 131


>gi|24374732|ref|NP_718775.1| flagellar motor switch protein [Shewanella oneidensis MR-1]
 gi|24349392|gb|AAN56219.1|AE015759_11 flagellar motor switch protein FliN [Shewanella oneidensis MR-1]
          Length = 124

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                + S+  S+            + V I   +     ++++++ L  G V+       
Sbjct: 24  LDELVDDSQPISKAEAAKL-DTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAG 82

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 83  EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122


>gi|117919798|ref|YP_868990.1| flagellar motor switch protein [Shewanella sp. ANA-3]
 gi|117612130|gb|ABK47584.1| flagellar motor switch protein FliN [Shewanella sp. ANA-3]
          Length = 124

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                ++S+  S+            + V I   +     ++++++ L  G V+       
Sbjct: 24  LDELVDESQPISKAEAAKL-DTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAG 82

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 83  EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122


>gi|255021380|ref|ZP_05293428.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
 gi|254969243|gb|EET26757.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
          Length = 150

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + VN+   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 69  DMILDIPVNLSVELGRTKIQIRNLLQLAQGSVVELERLAGEPMDVLVNGYLIAQGEVVLV 128

Query: 293 GKNYTIRITDRINFDQK 309
              + IR+TD I+  ++
Sbjct: 129 NDKFGIRLTDIISPAER 145


>gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297]
 gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297]
          Length = 165

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG+ I   E+  V +
Sbjct: 86  ILDIPVTISMEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVVMVNE 145

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD ++  ++ 
Sbjct: 146 KFGIRLTDVVSQQERV 161


>gi|224370776|ref|YP_002604940.1| FliN [Desulfobacterium autotrophicum HRM2]
 gi|223693493|gb|ACN16776.1| FliN [Desulfobacterium autotrophicum HRM2]
          Length = 113

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 33/99 (33%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
            S    +   +               + +++   +   +  + D++ L  G ++      
Sbjct: 10  SSQHGSDDEFDHEGQQTGRELDFILDIPLDLSVELGRARMLVNDLLQLGQGSIVELNKLA 69

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  N K I   E+  V + + +R+TD I    + 
Sbjct: 70  GEPLEVYINRKLIARGEVVVVNEKFGVRLTDIITPMDRV 108


>gi|294678113|ref|YP_003578728.1| surface presentation of antigens protein family [Rhodobacter
           capsulatus SB 1003]
 gi|294476933|gb|ADE86321.1| surface presentation of antigens protein family [Rhodobacter
           capsulatus SB 1003]
          Length = 418

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 83/282 (29%), Gaps = 15/282 (5%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
               + + K+ ++   L   +   S      + +  +     + +        S   I  
Sbjct: 30  RAIVQAVSKVAQDMFQLPAQVLQVSEGRRTLADLPEAIDPFSLIAIIEGPE-ESMGIIAL 88

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE--SS 157
               +  L+E     +    P    +    ++  +    +    A++ + +  T+    +
Sbjct: 89  PPETLSVLIEVQTTGNLGKGPPPPRKPT-RIDASMVVDFLDTTLAMIEESLVETEAVIWA 147

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE---NVASSFVLIIPQE----TLLKTT 210
                   +D  +     L +       + +            +  +P      +L +  
Sbjct: 148 GGFRYASYLDDPRPLGLLLEDMGYRLWQLEIGFGVGFERKGKLIWAVPVNGRGHSLRRLP 207

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
            ++       + ++ +            +  +D  ++     L  V+ L+ G  IP    
Sbjct: 208 GLADEGPISPDREAAEWAHRLENSVMGASAQLDAVLHRVTLPLAAVMRLRAGMDIPIPSD 267

Query: 271 EKTCAILS-ANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
                 +     +++ +  LG+      +R+   I  +++ L
Sbjct: 268 ALENLTVEGVGRRKLSAARLGQHRGLRAVRL---IEHEEEEL 306


>gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
           43531]
 gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
           43531]
          Length = 396

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 36/75 (48%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + ++  +   K ++K+++ L  G ++           +  NGK +   E+  + +
Sbjct: 317 ILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 376

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ ++  ++
Sbjct: 377 NFGVRITEIVSPLER 391


>gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 103

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            S+   S++   +           + V +   +     +L +++ L  G V+    +   
Sbjct: 4   ESTAKGSKSAKSNRTKDL-GLLSDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANE 62

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
              +  NGK I   E+  V   + +RI D ++ +  S+
Sbjct: 63  LLDVVVNGKLIAKGEVVTVNGRFGVRIVDVVSNENNSV 100


>gi|114562368|ref|YP_749881.1| flagellar motor switch protein [Shewanella frigidimarina NCIMB 400]
 gi|114333661|gb|ABI71043.1| flagellar motor switch protein FliN [Shewanella frigidimarina NCIMB
           400]
          Length = 127

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           Q       +      + S   +++           + V I   +     ++++++ L  G
Sbjct: 17  QALEEAEHVELDELVDDSRPITKEEAAKL-DGILDIPVTISMEVGRSFISIRNLLQLNQG 75

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 76  SVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125


>gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
           35243]
 gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
           35239]
 gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
           35243]
 gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
           35239]
          Length = 248

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
             + +      + + +      +  Y + + +   I   K  + DV+ L  G VI     
Sbjct: 146 ESATTPPASQASATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRS 205

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             + A +  NG+ I   E+  V + Y IRIT+ ++  ++  + 
Sbjct: 206 AGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAEQQNRQ 248


>gi|294140211|ref|YP_003556189.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
 gi|293326680|dbj|BAJ01411.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
          Length = 127

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V I   +     ++++++ L  G V+           +  NG  I   E+  V
Sbjct: 46  DTIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVV 105

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I+  ++  K
Sbjct: 106 NDKFGIRLTDVISQTERIKK 125


>gi|255022968|ref|ZP_05294954.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J1-208]
          Length = 115

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 40/103 (38%)

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
             + +P  ++ +      +    + ++  +      ++ +Q+      R+   KTT K++
Sbjct: 1   MRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKEL 60

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
             L++G V+      +         K  + C +G+ G    ++
Sbjct: 61  NKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 103


>gi|302343740|ref|YP_003808269.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
           2075]
 gi|301640353|gb|ADK85675.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
           2075]
          Length = 117

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 30/76 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +      + D++ L  G V+           +  N K I   E+  V +
Sbjct: 38  ILDIPLEVTVELGRTSMLINDLLQLGQGSVVELNKLAGEPLEILVNRKLIARGEVVVVNE 97

Query: 295 NYTIRITDRINFDQKS 310
            + +R+TD ++  ++ 
Sbjct: 98  KFGVRLTDIVSPIERV 113


>gi|157376190|ref|YP_001474790.1| flagellar motor switch protein [Shewanella sediminis HAW-EB3]
 gi|157318564|gb|ABV37662.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
          Length = 127

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 44/122 (36%)

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
           E+    +   + ++ + +   + L     +     +           + V I   +    
Sbjct: 4   EDTGDDWAEAMAEQAIEEAQAVELDELTDTAAALSEEDVAKLDSIMDIPVTISMEVGRSF 63

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            ++++++ L  G V+           +  NG  I   E+  V   + IR+TD I+  ++ 
Sbjct: 64  ISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI 123

Query: 311 LK 312
            K
Sbjct: 124 KK 125


>gi|298530626|ref|ZP_07018028.1| flagellar motor switch protein FliN [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510000|gb|EFI33904.1| flagellar motor switch protein FliN [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 187

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +  ++   +  + +++ L  G VI           +  NGK +   E   + +
Sbjct: 108 ILDIPLTVTAQLGGTQLLINELLQLGQGSVIELNKLAGEPMEVLVNGKLVARGEAVVINE 167

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 168 KFGIRLTDIISPVERI 183


>gi|126175120|ref|YP_001051269.1| flagellar motor switch protein [Shewanella baltica OS155]
 gi|153001444|ref|YP_001367125.1| flagellar motor switch protein [Shewanella baltica OS185]
 gi|160876169|ref|YP_001555485.1| flagellar motor switch protein [Shewanella baltica OS195]
 gi|217972624|ref|YP_002357375.1| flagellar motor switch protein [Shewanella baltica OS223]
 gi|304409951|ref|ZP_07391570.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|307302336|ref|ZP_07582094.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
 gi|125998325|gb|ABN62400.1| flagellar motor switch protein FliN [Shewanella baltica OS155]
 gi|151366062|gb|ABS09062.1| flagellar motor switch protein FliN [Shewanella baltica OS185]
 gi|160861691|gb|ABX50225.1| flagellar motor switch protein FliN [Shewanella baltica OS195]
 gi|217497759|gb|ACK45952.1| flagellar motor switch protein FliN [Shewanella baltica OS223]
 gi|304351360|gb|EFM15759.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|306914374|gb|EFN44795.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
 gi|315268365|gb|ADT95218.1| flagellar motor switch protein FliN [Shewanella baltica OS678]
          Length = 126

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                + S   ++            + V I   +     ++++++ L  G V+       
Sbjct: 26  LDELVDDSRPITKAEAAKL-DTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAG 84

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 85  EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 124


>gi|91792692|ref|YP_562343.1| flagellar motor switch protein [Shewanella denitrificans OS217]
 gi|91714694|gb|ABE54620.1| Flagellar motor switch FliN [Shewanella denitrificans OS217]
          Length = 127

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           Q       +      + S   +++           + V I   +     ++++++ L  G
Sbjct: 17  QAIEEAQQIELDELVDDSRPITKEEAAKL-DSILDIPVTISMEVGRSFISIRNLLQLNQG 75

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 76  SVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125


>gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 368

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +N+   I   +  LKDV+    G V+    +      +  NG+ I   E+  +  
Sbjct: 289 IMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD 348

Query: 295 NYTIRITDRINF 306
           N+ +RIT+ +N 
Sbjct: 349 NFGVRITEIVNT 360


>gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName:
           Full=CheY-P phosphatase FliY; AltName: Full=Flagellar
           motor switch protein FliY
 gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis]
 gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 378

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 64/194 (32%), Gaps = 2/194 (1%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
                +G +            ++  VDI+  S      S I  +F E            +
Sbjct: 39  DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVIPRSKISDAFPEPYVAIEVNYTEGF 98

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
           S +  +    +    + + ++G   +           +  ++   + +   +  ++   S
Sbjct: 99  SGSNLLVVEQSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 158

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210
              + SP   +  D+   K       +E +  ++ N+ +   + SS + + P        
Sbjct: 159 KKIDISPPRVELLDVTEEKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDLI 218

Query: 211 LISLSSQNKSENQS 224
              ++S++  E ++
Sbjct: 219 SSLMNSESAEEEET 232



 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 35/78 (44%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + ++I   +   K ++K+++ L  G +I           +  N + +   E+  +
Sbjct: 297 DMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVI 356

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +R+TD ++  ++ 
Sbjct: 357 EENFGVRVTDILSQAERI 374


>gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5]
 gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5]
          Length = 378

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 64/194 (32%), Gaps = 2/194 (1%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
                +G +            ++  VDI+  S      S I  +F E            +
Sbjct: 39  DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVIPRSKISDAFPEPYVAIEVNYTEGF 98

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
           S +  +    +    + + ++G   +           +  ++   + +   +  ++   S
Sbjct: 99  SGSNLLVVEQSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 158

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210
              + SP   +  D+   K       +E +  ++ N+ +   + SS + + P        
Sbjct: 159 KKIDISPPRVELLDVTEEKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDLI 218

Query: 211 LISLSSQNKSENQS 224
              ++S++  E ++
Sbjct: 219 SSLMNSESAEEEET 232



 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 35/78 (44%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + ++I   +   K ++K+++ L  G +I           +  N + +   E+  +
Sbjct: 297 DMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVI 356

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +R+TD ++  ++ 
Sbjct: 357 EENFGVRVTDILSQAERI 374


>gi|149184185|ref|ZP_01862503.1| hypothetical protein ED21_25743 [Erythrobacter sp. SD-21]
 gi|148831505|gb|EDL49938.1| hypothetical protein ED21_25743 [Erythrobacter sp. SD-21]
          Length = 298

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 80/286 (27%), Gaps = 10/286 (3%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSF 77
             L  +      ++   +     + +       E  D   +  S  + +           
Sbjct: 18  DELLSRAATPPELDIEFARFVSGFAENAQLQLAELCDDRGIATSVVATELLPVGDWYEQM 77

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
                 S  SL   S    +      ++   E +LG S E   +L    L     + A +
Sbjct: 78  GNARRHSYFSLGQESRGILVSVGIGELVAQFERILGGSGEVDERLG--ILPASAARFAHQ 135

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
              ++   + +  S  +E S +       D            +  TI ++ +  +     
Sbjct: 136 FDDRVCEAMRRT-SDRREISASAIGDEAEDVAPFA--LGEKVWTATIAISSSKSDRPWQV 192

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
            L   Q  + +      +  + +  ++             +++ +   +     ++  + 
Sbjct: 193 RLAACQSMIAELVEKRAA--SPATGRTIGARGIGGSAIADVDLPLRAVLVDVPMSIARLA 250

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +L+ G VI           L      I    +G +     + +T  
Sbjct: 251 SLEPGAVI--QVAVNRSVPLQIGQLTIAHGCVGELDDRVALELTHT 294


>gi|145298354|ref|YP_001141195.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851126|gb|ABO89447.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 121

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 1/113 (0%)

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
            + ++ + +     L         S +           + V I   +   + ++++++ L
Sbjct: 8   ALEEQVIAEAKPAPLEELTDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQL 66

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 67  NQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 119


>gi|325273550|ref|ZP_08139780.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
 gi|324101310|gb|EGB98926.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
          Length = 82

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + VNI   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 3   ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 62

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  K
Sbjct: 63  KFGIRLTDVISPSERIKK 80


>gi|160896095|ref|YP_001561677.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
 gi|160361679|gb|ABX33292.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
          Length = 143

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 62  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 121

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD +   ++ 
Sbjct: 122 KFGIRLTDVVTPSERL 137


>gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Ethanoligenens harbinense YUAN-3]
 gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Ethanoligenens harbinense YUAN-3]
          Length = 374

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 34/75 (45%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               ++ +++   +   +  +++++   +G +I    +      +  NG+ I   E+  +
Sbjct: 297 ELIQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPVDIIVNGQLIAQGEVVVI 356

Query: 293 GKNYTIRITDRINFD 307
            +N+ +RIT+ I   
Sbjct: 357 DENFGVRITEIIGKQ 371


>gi|88858100|ref|ZP_01132742.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
 gi|88819717|gb|EAR29530.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
          Length = 131

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                N+    +++           + V I   +   K ++++++ L  G V+       
Sbjct: 31  LEELSNQPAEITQEEKRKL-DTILDIPVTISMEVGRSKISIRNLLQLNQGSVVELDRVAG 89

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 90  EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 129


>gi|49184600|ref|YP_027852.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|65319043|ref|ZP_00392002.1| COG1868: Flagellar motor switch protein [Bacillus anthracis str.
           A2012]
 gi|227815465|ref|YP_002815474.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. CDC 684]
 gi|254683264|ref|ZP_05147125.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. CNEVA-9066]
 gi|254734617|ref|ZP_05192329.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. Western North America USA6153]
 gi|254741026|ref|ZP_05198714.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. Kruger B]
 gi|254755269|ref|ZP_05207303.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. Vollum]
 gi|254759805|ref|ZP_05211829.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. Australia 94]
 gi|49178527|gb|AAT53903.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|227004068|gb|ACP13811.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. CDC 684]
          Length = 200

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 4/139 (2%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
              +   ++   + K   +    +M + +++  ++ +   F S  +     + +++    
Sbjct: 51  EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
           L         I      VI + E  LG   +       R L+  E          +   L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169

Query: 147 NQCISTTQESSPNLEDFYD 165
            Q   +     P       
Sbjct: 170 EQSFESVVAIEPKFVTTER 188


>gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a]
 gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
 gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
 gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1]
          Length = 113

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 39  LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 98

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 99  NFGVRITEIIKTKNE 113


>gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
 gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
          Length = 134

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+++++ L    V+P   +      +  NG  I   E+  +G+
Sbjct: 54  ILDIPVKMTVELGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGEVVVMGE 113

Query: 295 NYTIRITDRINFDQKS 310
            Y +RI D +   ++ 
Sbjct: 114 QYGVRIADIVTPAERM 129


>gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
 gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
          Length = 149

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   + ++I   I     T+K+++ L+ G V+       +   + ANGK I   EL  V
Sbjct: 66  QRILDIPLSITVVIGTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVV 125

Query: 293 GKNYTIRITDRINFDQKS 310
           G+N+ IRI + I  +++ 
Sbjct: 126 GENFGIRIAEIIEKEERV 143


>gi|332305667|ref|YP_004433518.1| flagellar motor switch protein FliN [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172996|gb|AEE22250.1| flagellar motor switch protein FliN [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 131

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            + ++ +             + V I   +     ++++++ L  G V+           +
Sbjct: 36  EEDKDITPAEKRKL-DTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDV 94

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 95  LVNGTLIAHGEVVVVNDKFGIRLTDVISQLERIKK 129


>gi|107025883|ref|YP_623394.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia AU 1054]
 gi|116692933|ref|YP_838466.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia HI2424]
 gi|170737802|ref|YP_001779062.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
 gi|105895257|gb|ABF78421.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia AU 1054]
 gi|116650933|gb|ABK11573.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia HI2424]
 gi|169819990|gb|ACA94572.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
          Length = 384

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 71/297 (23%), Gaps = 31/297 (10%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P+  A       D      I ++L       L  + +      V++           H
Sbjct: 101 IDPLAEAEWLADAADPAVPAVIRAALLADLCAPLTAVLQAATRQRVEL-LPPPDGVPAWH 159

Query: 73  IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
                          L      W  +  +       + +      A+       Y     
Sbjct: 160 A-----SPAALR-FELRRADATWRCHGALLFDAPDALAVFFAAAPAALADARAAYANLP- 212

Query: 129 TVEKKLAKRTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
                            L               +E +   +       RL       I  
Sbjct: 213 ------VPLVFEIGRTELTTAELADVVGGDIIAIERWQAHEQNLLCVARLPAAPAWEITG 266

Query: 187 NMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
             +   +    +  +P   L  T    +  + + +            R    L V++   
Sbjct: 267 RPSGNRLTVERIREMP---LEPTRTDSAPPTTHDAPPAD------VPRSLDGLAVDLRFE 317

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
           +      L ++  L+ G VI            L ANG  I +  L  VG+   +R+ 
Sbjct: 318 LPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 374


>gi|116626505|ref|YP_828661.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229667|gb|ABJ88376.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 282

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + + +       +  +KDV+ L  G ++           +  N   I   E+  
Sbjct: 200 MELLLDVELPVSISFGKTEILMKDVLKLTTGSIVELNRGVNEPVEVLVNHCLIARGEVVV 259

Query: 292 VGKNYTIRITDRINFDQKSLKNFL 315
           V  NY +RI   +N  Q  L++  
Sbjct: 260 VEGNYGVRIQQIVNR-QDRLRSIR 282


>gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
 gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
          Length = 116

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + VN+   +   +  + D++ + +G VI           +  NG  +   E+  V  
Sbjct: 36  IRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVRVNGTLLGHAEVVVVNN 95

Query: 295 NYTIRITDRINFDQKSLKNFLH 316
            Y +R+ + ++ ++  L+   +
Sbjct: 96  KYGLRLVNVVD-EKDMLRGLAN 116


>gi|34498584|ref|NP_902799.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
 gi|34104438|gb|AAQ60796.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
          Length = 147

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   K  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 65  DMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 124

Query: 293 GKNYTIRITDRINFDQKS 310
              + IR+TD I   ++ 
Sbjct: 125 NDKFGIRLTDIITPAERI 142


>gi|74055042|gb|AAZ95847.1| FliN [Aeromonas hydrophila]
          Length = 130

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 1/113 (0%)

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
            + ++ + +     L         S +           + V I   +   + ++++++ L
Sbjct: 17  ALEEQVIAEAKPAPLEELTDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQL 75

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 76  NQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 128


>gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073]
 gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC
           39073]
          Length = 395

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + ++I+  +      ++D+++L  G ++      +    ++ NG  I   E+  V
Sbjct: 313 DLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQGEVVIV 372

Query: 293 GKNYTIRITDRINFDQKSLKNFLH 316
            +N+ +RIT  +   ++ + +   
Sbjct: 373 NENFGVRITHILEPYER-INHLRQ 395


>gi|262276387|ref|ZP_06054196.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
 gi|262220195|gb|EEY71511.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
          Length = 129

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                +++   + D           + V I   +      +++++ L  G V+       
Sbjct: 29  LDELVDETPPINADEARKL-DAILDIPVTISMEVGRTNINIRNLLQLNQGSVVELDRLAG 87

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 88  ESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127


>gi|315127311|ref|YP_004069314.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
 gi|315015825|gb|ADT69163.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
          Length = 132

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                +     S +           + V I   +   K  +++++ L  G V+       
Sbjct: 32  LDELDDSKHELSGEEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAG 90

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 91  EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130


>gi|311992319|gb|ADQ26733.1| flagellar motor switch protein [Aeromonas hydrophila]
          Length = 129

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           +     L         S +           + V I   +   + ++++++ L  G V+  
Sbjct: 24  EAKPAPLEELKDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVEL 82

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                    +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 83  DRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 127


>gi|224826625|ref|ZP_03699726.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
 gi|224601226|gb|EEG07408.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
          Length = 143

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +   +  +++++ L  G V+           +  NG  I   E+  V
Sbjct: 61  DMILDIPVQLTVELGRTRIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 120

Query: 293 GKNYTIRITDRINFDQKS 310
              + IR+TD I   ++ 
Sbjct: 121 NDKFGIRLTDIITPAERI 138


>gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
 gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
 gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
 gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
 gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
 gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
 gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
 gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
 gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
 gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1]
 gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
 gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN
 gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi]
 gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi]
 gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
 gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
 gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
 gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
 gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
 gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
 gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
 gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
 gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
 gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1]
 gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
 gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40]
          Length = 113

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 39  LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 98

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 99  NFGVRITEIIKTKNE 113


>gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
 gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
          Length = 226

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 34/73 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   +   +  +++V+ +K G V+P          +  NG+ I   E+  +  
Sbjct: 153 LQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVLND 212

Query: 295 NYTIRITDRINFD 307
           N+ +R+ + I+ +
Sbjct: 213 NFCVRVAEIISPE 225


>gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
 gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
          Length = 248

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 41/103 (39%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
             + +        + +      +  Y + + +   I   K  + DV+ L  G VI     
Sbjct: 146 ESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRS 205

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             + A +  NG+ I   E+  V + Y IRIT+ ++  ++  + 
Sbjct: 206 AGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAEQQNRQ 248


>gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi]
 gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr]
 gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04]
 gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi]
 gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr]
 gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04]
          Length = 113

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 39  LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 99  NFGVRITEIIKTKNE 113


>gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
 gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
          Length = 102

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V++   +   + TL+D++ L  G V+           +  NG  I   E+  VG+
Sbjct: 24  LANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVVVVGE 83

Query: 295 NYTIRITDRINFDQKS 310
            + IR  D ++  Q+ 
Sbjct: 84  KFGIRFGDIVDPRQRI 99


>gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
           3776]
 gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
           3776]
          Length = 189

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 32/75 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + ++I   +   +  + +V+ L+ G V+P          +  NGK +   E+  +
Sbjct: 114 DALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVL 173

Query: 293 GKNYTIRITDRINFD 307
             N+ +RI + +  D
Sbjct: 174 NDNFCVRIAEILTQD 188


>gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
           25644]
 gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
           25644]
          Length = 409

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 35/78 (44%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +N+   +   K +++++++   G VI           +  NGK I   E+  +
Sbjct: 328 DLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPLDILLNGKLIAQGEVVVI 387

Query: 293 GKNYTIRITDRINFDQKS 310
             N+ +RIT+ ++  Q+ 
Sbjct: 388 NDNFGVRITNILSQSQRI 405


>gi|134294004|ref|YP_001117740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           vietnamiensis G4]
 gi|134137161|gb|ABO58275.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           vietnamiensis G4]
          Length = 392

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 74/291 (25%), Gaps = 19/291 (6%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           L P+      G   D      I ++L       L  + +      V++      S     
Sbjct: 109 LDPLAETEWLGDAADPAVPAVIRTALLADLAAPLAAVLQAATRQRVEL-LPPPASVPAW- 166

Query: 73  IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
              +      F        W  +  +       + +      A         + + +++ 
Sbjct: 167 --RTAPAALRFELRRADGAWRCHGALLFDAPDALAV----FFAQPAPARPAPHAAYASLP 220

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             L                         +E +   +       R+       I    +  
Sbjct: 221 VPLVFEVGRTELTTAELA-DVVGGDIIAIERWRAHEQNLLCVARVPATPAWEITGRPSGT 279

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            +    +  +P   L  T   +  +        +       R    L V++   +     
Sbjct: 280 RLTVERIREMP---LEPTRTDTPPATAHDAPPDDA-----PRSLDGLAVDLRFELPPTSI 331

Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
            L ++  L+ G VI            L ANG  I +  L  VG+   +R+ 
Sbjct: 332 PLGELGALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 382


>gi|313905142|ref|ZP_07838511.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Eubacterium cellulosolvens 6]
 gi|313470045|gb|EFR65378.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Eubacterium cellulosolvens 6]
          Length = 578

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
              S Q        + +D       ++ + I   +   +  +KD++ L  G ++      
Sbjct: 477 SLKSPQYTDVPDGGEEVDDNREMLMKVPMEISVEVGRTRKPIKDILELTQGSLVVLDKMA 536

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
              A L  NG+ I   ++  V  N+ IRIT+ +N D
Sbjct: 537 GEQADLYVNGECIAHGDIVVVEDNFGIRITEILNKD 572



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 65/220 (29%), Gaps = 10/220 (4%)

Query: 26  GDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII-HSFKENF 81
           GD    E    ++G +    L          +    +I+         S  +    +   
Sbjct: 2   GDTVFNEMELDAIGEIMNISLGASATAVSTMLGTSTNITTPKVSVQSRSEFVFKEIEPAV 61

Query: 82  VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
                 +   S    I  S   V  ++  ++G          +    +  +++  + +  
Sbjct: 62  GVEIQYVEGLSGKNVIMFSREDVRIIVGMMMGMEIPPEEFELDEMNQSAIREVMNQMMGS 121

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS----- 196
            +  L++ +    + S  +      + + K+     ++    +  ++ I +  SS     
Sbjct: 122 SATALSEFLGYRVDISTPVSFEIANEKVFKDKYFSDDKQEVVVRFSLEIGDELSSEFLNI 181

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLID-PFARKT 235
             L + ++ L         + + S   +    + P   + 
Sbjct: 182 MSLDLVKKLLEPYADTFSGTGDGSSVTAPGAREIPLEDEV 221


>gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF]
 gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens
           QYMF]
          Length = 393

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 1/111 (0%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P     K  +  +  Q+  +  +  L +  A     + +++   +      + +V+    
Sbjct: 283 PSLENSKINVQPVQFQSFDQQSNRGLPENIA-LIQDVPLSVTVELGRTVKKISEVLEFGP 341

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G +I           +  NG+ +   E+  + +NY IRITD +   ++  K
Sbjct: 342 GTIIELEKVVGEPLDILVNGQYVAKGEVVVIDENYGIRITDIVAPAKRLSK 392


>gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
 gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
          Length = 254

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
             + +        + +      +  Y + + +   I   K  + DV+ L  G VI     
Sbjct: 152 ESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRS 211

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             + A +  NG+ I   E+  V + Y IRIT+ ++  +
Sbjct: 212 AGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAE 249


>gi|117618193|ref|YP_855912.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559600|gb|ABK36548.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 130

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           +     L         S +           + V I   +   + ++++++ L  G V+  
Sbjct: 25  EAKPAPLEELKDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVEL 83

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                    +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  DRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 128


>gi|59712451|ref|YP_205227.1| flagellar motor switch protein [Vibrio fischeri ES114]
 gi|197335660|ref|YP_002156670.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
 gi|59480552|gb|AAW86339.1| flagellar motor switch component FliN [Vibrio fischeri ES114]
 gi|197317150|gb|ACH66597.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
          Length = 129

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
               + K+   +ED           + V I   +     ++++++ L  G V+       
Sbjct: 29  LEDLEEKAPEFNEDERRKL-DTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAG 87

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
               +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 88  ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127


>gi|85711034|ref|ZP_01042094.1| flagellar motor switch protein [Idiomarina baltica OS145]
 gi|85694947|gb|EAQ32885.1| flagellar motor switch protein [Idiomarina baltica OS145]
          Length = 140

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 33/80 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V I   +   + ++++++ L  G V+           +  NG  I   E+  V
Sbjct: 59  DAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVV 118

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD I+  ++  K
Sbjct: 119 NDKFGIRLTDVISQIERIRK 138


>gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
           5305]
 gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
           5305]
          Length = 227

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 33/76 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +      +++VV+LK G V+P          +  NG+ I   E+  +
Sbjct: 152 EMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNGRLIARGEVLVL 211

Query: 293 GKNYTIRITDRINFDQ 308
             N+ +R+ + +   +
Sbjct: 212 NDNFCVRVAEILTPKE 227


>gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
           A6]
 gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
           A6]
          Length = 238

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 36/74 (48%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   I   + +++D + L+ G+VI         A +  NG+ I   E+  V +
Sbjct: 162 ISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVVVVDQ 221

Query: 295 NYTIRITDRINFDQ 308
           +Y +RIT  ++  +
Sbjct: 222 DYAVRITRILDTAE 235


>gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo]
 gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
 gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo]
 gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
          Length = 113

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 39  LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 99  NFGVRITEIIKTKNE 113


>gi|330828807|ref|YP_004391759.1| flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
 gi|328803943|gb|AEB49142.1| Flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
          Length = 130

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           +     L         S +           + V I   +   + ++++++ L  G V+  
Sbjct: 25  EAKPAPLEELKDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVEL 83

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                    +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  DRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 128


>gi|323493118|ref|ZP_08098249.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG
           20546]
 gi|323312589|gb|EGA65722.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG
           20546]
          Length = 272

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 97/286 (33%), Gaps = 42/286 (14%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
             I     SL       L    +  +    ++ S  +     FS+  +  ++N   +   
Sbjct: 25  HVIRDKLESLISSSCNNLTFQLQSWLKSCRIETSVNAVSLHSFSN--NEMEKNATSTFQH 82

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL- 146
             +     F+ C    +I L +   GAS +       ++LS  + +L  R   Q++  L 
Sbjct: 83  --NAGGKVFVHCDKATLIKLADCFYGASIDR----AEQNLSNSDLRLQDRIGQQVTQWLA 136

Query: 147 -NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
             +  +   E                            + +++ +++   S  + + ++ 
Sbjct: 137 PQEMWAN-GEFELAFGTGLY------------------VKIDIQLDDHCGSLHIKLDEQL 177

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           +   T             +E L D F +      V ++  ++ K+  L D+++L+   ++
Sbjct: 178 VNTLTEQL------DLQPNESLYDSFCQSLAATPVKLNVLLSQKRMPLSDLLSLQANDIL 231

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           P      +   +S   + +++  +        +     IN D++ L
Sbjct: 232 PIELL--STVPVSIGDQHLFNGSVAEKEGQLVL----IINHDKEPL 271


>gi|206890622|ref|YP_002249867.1| flagellar motor switch protein FliN [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742560|gb|ACI21617.1| flagellar motor switch protein FliN [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 139

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   I   +  +++++ L  G V+           +  NGK +   E+  V +
Sbjct: 60  ILDIPLELVVVIGRTRILVQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNE 119

Query: 295 NYTIRITDRINFDQKS 310
            + IRITD I+  ++ 
Sbjct: 120 KFGIRITDIISPQERV 135


>gi|78485772|ref|YP_391697.1| Type III secretion system outer membrane O protein [Thiomicrospira
           crunogena XCL-2]
 gi|78364058|gb|ABB42023.1| Flagellar motor switch protein FliN [Thiomicrospira crunogena
           XCL-2]
          Length = 153

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   I   K +++++++   G VI           L  NG  I   E+  +  
Sbjct: 74  LLDIPVTLQLEIGRAKVSIRNLLSYTQGSVIEMDRLAGEPLDLLVNGTLIAHGEVVVIND 133

Query: 295 NYTIRITDRINFDQKSLK 312
            + +R+TD ++  ++  K
Sbjct: 134 KFGVRLTDVVSPQERIKK 151


>gi|330447939|ref|ZP_08311587.1| surface presentation of antigens family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492130|dbj|GAA06084.1| surface presentation of antigens family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 255

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 89/287 (31%), Gaps = 44/287 (15%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKM--------DLDVDISYTSCQSGKFSHIIHSFKENFV 82
           + K   ++       L +   E            +  IS  +              ++  
Sbjct: 4   LGKPIHTIKDELTNILNRSLTELTDQIQKWIKSTEFTISIVNIDFQSPQQ-----GQHSA 58

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
            +              CS  L+I+L +    +    +  + ++ L+  + +L +R     
Sbjct: 59  LTLKH--DDGGMINFRCSAPLLISLSDRFYNSPVSRLNSVKSQVLTASDFRLQQRLGHLF 116

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
           ++V+              ED ++      +      +    I ++++ E+   +  + I 
Sbjct: 117 ASVIAP------------EDMWNECDNSLS-----GDIGLVIQLDVSCEDTLGTITICID 159

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
              +   T +       + N      + F ++     V ++T +  K+  L  V+ LK G
Sbjct: 160 SCLIQTLTTVIGLQPIDNIN------EQFTKQLESTKVVLNTILCEKQMPLDQVLQLKPG 213

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            V      + +   +    + +++  +        +     IN  + 
Sbjct: 214 DVFDIDLIQSSPISI--GQEHLFNGHVAEQNGQLVL----IINTSKD 254


>gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
 gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
 gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
 gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
          Length = 113

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 39  LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 99  NFGVRITEIIKTKNE 113


>gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
           51599]
 gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
           51599]
          Length = 135

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V +   I   +TT+ +V+ L  G V+    +      +  NG  I   E+  V
Sbjct: 52  ERILDIPVQLSVEIGRTRTTINNVLQLAPGSVVELDAQAGAPMDVLINGYLIAQGEVVVV 111

Query: 293 GKNYTIRITDRINFDQKS 310
              + IR+TD +   ++ 
Sbjct: 112 NDRFGIRLTDIVTPAERM 129


>gi|209695732|ref|YP_002263662.1| flagellar motor switch protein [Aliivibrio salmonicida LFI1238]
 gi|208009685|emb|CAQ79984.1| polar flagellar switch protein FliN [Aliivibrio salmonicida
           LFI1238]
          Length = 127

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 35/95 (36%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            ++     +           + V I   +     ++++++ L  G V+           +
Sbjct: 31  EETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGESLDV 90

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 91  MVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125


>gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas
           maltophilia K279a]
 gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14]
 gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas
           maltophilia K279a]
 gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14]
          Length = 111

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G V+           +  NG  I   E+  +  
Sbjct: 32  ILDVPVTLSLEVGRARLPIRNLLQLNQGSVVELERGAGESLDVFVNGTLIAHGEVVVIND 91

Query: 295 NYTIRITDRINFDQKS 310
            + +R+TD ++  ++ 
Sbjct: 92  RFGVRLTDVVSPSERI 107


>gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 397

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 36/75 (48%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + ++  +   K ++K+++ L  G ++           +  NGK +   E+  + +
Sbjct: 318 ILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGETVDIMVNGKYLAKGEVVVIDE 377

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ ++  ++
Sbjct: 378 NFGVRITEIVSPLER 392


>gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
           R551-3]
 gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
           R551-3]
          Length = 111

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G V+           +  NG  I   E+  +  
Sbjct: 32  ILDVPVTLSLEVGRARLPIRNLLQLNQGSVVELERGAGESLDVFVNGTLIAHGEVVVIND 91

Query: 295 NYTIRITDRINFDQKS 310
            + +R+TD ++  ++ 
Sbjct: 92  RFGVRLTDVVSPSERI 107


>gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
 gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
          Length = 250

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 36/76 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + + +   +   + T++++++L  G VI       + A L  NG+ I   E+  +
Sbjct: 169 ELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVVI 228

Query: 293 GKNYTIRITDRINFDQ 308
            +N+ IR+T+ I    
Sbjct: 229 DENFGIRVTEIIKPGD 244


>gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
 gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
          Length = 212

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 34/76 (44%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                +++++   +   +  L+DV+ L+ G V+           +  NG+ I   E+  +
Sbjct: 135 ELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVNGRLIARGEVLVL 194

Query: 293 GKNYTIRITDRINFDQ 308
             N+ +R+ + ++ D 
Sbjct: 195 NDNFCVRVAELLSGDD 210


>gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 95

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 29/74 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   +  ++ ++ L  G VI           +  NG  +   E+  V  
Sbjct: 14  LRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGTLVAKGEVVVVDD 73

Query: 295 NYTIRITDRINFDQ 308
            + +RI + I+ D+
Sbjct: 74  EFGVRILEIISSDE 87


>gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 101

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V   + +     T+K+++ L++G VI           L  N +     E+   
Sbjct: 16  DELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVVVY 75

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 76  EKNLAIRINEILDSK 90


>gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
           DSM 574]
          Length = 131

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +      L++V+ L +G VI           +  N ++    E+  V  
Sbjct: 49  LADVQITISAELGETTLKLREVLNLDVGSVIDLNKSAGDAINIYFNDRKAAKGEVIVVND 108

Query: 295 NYTIRITDRINFD 307
           ++ +RI   I   
Sbjct: 109 SFAVRINSIIPPK 121


>gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
           11B]
 gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
           11B]
          Length = 123

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 34/78 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   + T++++++L  G V+       +   L  NG  I   E+  +
Sbjct: 43  ELLQNVEMGVTAELGRTRMTVRELLSLAPGMVVELNRAAGSPIDLYVNGTLIARGEVVVI 102

Query: 293 GKNYTIRITDRINFDQKS 310
            + + +RI++ +  D + 
Sbjct: 103 DEEFGVRISEIVGPDSER 120


>gi|49184601|ref|YP_027853.1| flagellar motor switch protein, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|65319044|ref|ZP_00392003.1| COG1868: Flagellar motor switch protein [Bacillus anthracis str.
           A2012]
 gi|227815464|ref|YP_002815473.1| flagellar motor switch protein FliM [Bacillus anthracis str. CDC
           684]
 gi|49178528|gb|AAT53904.1| flagellar motor switch protein, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|227003444|gb|ACP13187.1| flagellar motor switch protein FliM [Bacillus anthracis str. CDC
           684]
          Length = 120

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTL 253
           +  + IP  ++ +      S      +  +          K  Q+   +   I  +K T+
Sbjct: 9   TVRIGIPFLSVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTM 68

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            ++  ++ G +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 69  GEIEQIEEGDIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 113


>gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
 gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
          Length = 96

 Score = 73.1 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 36/77 (46%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R    ++V +   I   + +L++++ L    VI    +      +  NG  I   E+  V
Sbjct: 19  RLLQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGTLIGRGEVVTV 78

Query: 293 GKNYTIRITDRINFDQK 309
           G  + +R+T+ +N D++
Sbjct: 79  GDRFGVRMTELVNPDKR 95


>gi|307747018|gb|ADN90288.1| Hypothetical protein CJM1_0060 [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 123

 Score = 73.1 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+  V
Sbjct: 42  NLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIV 101

Query: 293 GKNYTIRITDRINFDQKSLKNFL 315
             N+ ++IT+ I   ++ L+   
Sbjct: 102 DGNFGVQITE-IGSKKERLEQLR 123


>gi|312884903|ref|ZP_07744593.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367380|gb|EFP94942.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 138

 Score = 73.1 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 2/113 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           P+  + +     L     +  QS   D           + V I   +   + ++++++ L
Sbjct: 24  PEIDVDEVMSAQLDELEDTSEQSSLSDDERRKIDSILDIPVTISMEVGRSQISIRNLLQL 83

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             G V+           +  NG  I   E+  V   + IR+TD I+  ++  K
Sbjct: 84  NQGSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 136


>gi|71042010|pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein
 gi|71042011|pdb|1YAB|B Chain B, Structure Of T. Maritima Flin Flagellar Rotor Protein
          Length = 87

 Score = 73.1 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   + TLK V+ +  G +I           +  NGK I   E+  +
Sbjct: 5   ELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVI 64

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +RIT+ ++  ++ 
Sbjct: 65  DENFGVRITEIVSPKERL 82


>gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
           17241]
 gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
           17241]
          Length = 446

 Score = 73.1 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            Q   +       +        +++++   I   K  +KD++    G VI    +     
Sbjct: 344 PQFTVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIKDIIDFGQGTVIELNKQAGAPV 403

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKN 313
            +  NG+ +   ++  +  N+ +RIT+ +   +  +SLK 
Sbjct: 404 DIVVNGRLLARGDVVVIDDNFGVRITEIVGTKELMESLKE 443


>gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium
           HTCC2207]
 gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium
           HTCC2207]
          Length = 108

 Score = 73.1 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           A     + V I   +      ++D++ L  G V+           L  N   +   E+  
Sbjct: 27  ADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVVELDRIAGEPLDLLVNNTLVAQGEVVL 86

Query: 292 VGKNYTIRITDRINFDQKS 310
           V + Y +R+T  I    + 
Sbjct: 87  VNERYGVRLTSVIPTADRV 105


>gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855]
 gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855]
          Length = 250

 Score = 73.1 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/256 (9%), Positives = 62/256 (24%), Gaps = 54/256 (21%)

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
           +    + V    E + G                    L +   +Q    +   ++     
Sbjct: 1   MALDPDWVPLFSEAMFGEEMAPDADGA--------LDLMQEISSQGFGTVQSTLAEEG-- 50

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT------- 209
              L +               +E    +             ++++P      +       
Sbjct: 51  -LTLPEVQFDTAAPGQAPPSPDEAAWLVPFTAQRGGGELDGLVLLPDGAEASSDASTTTE 109

Query: 210 -----------------------TLISLSSQNKSENQSEDLIDPFARK------------ 234
                                     S + ++     S         +            
Sbjct: 110 SAPQEAAAGADQSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFK 169

Query: 235 -TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               +++ +   +  ++  L DV+ L  G V+           + ANG+ I   E   + 
Sbjct: 170 LLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVID 229

Query: 294 KNYTIRITDRINFDQK 309
           + + +RIT+  +   +
Sbjct: 230 EQFGVRITNLASEGHR 245


>gi|329849953|ref|ZP_08264799.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
           C19]
 gi|328841864|gb|EGF91434.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
           C19]
          Length = 108

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + VNI   +     ++  ++ L  G V+    +      +  N + +   E+  V  
Sbjct: 32  VFDVPVNISAVLGKSYMSVSQLLKLGAGSVLELDRKVGEAIDIYVNNRLVARGEVVVVDD 91

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I  + 
Sbjct: 92  RLGVTMTEIIKSED 105


>gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
           BAA-613]
          Length = 368

 Score = 72.7 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +N+   I   +  LKDV+    G V+    +      +  NG+ I   E+  +  
Sbjct: 289 IMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVVVIDD 348

Query: 295 NYTIRITDRINF 306
           N+ +RI++ +N 
Sbjct: 349 NFGVRISEIVNT 360


>gi|323490152|ref|ZP_08095372.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
 gi|323396200|gb|EGA89026.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
          Length = 351

 Score = 72.7 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           Q     T      S   + + +    +        + + +   +   K  +KD++ +  G
Sbjct: 241 QSPEAPTVQNVQFSSFDNTDVASSETNNL-NLLLDIPLQVTVELGRTKRMVKDILEISQG 299

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            +I           +  N K I   E+  + +N+ +R+TD ++  ++  K
Sbjct: 300 SIIELDKLAGEPVDILINNKLIAVGEVVVIDENFGVRVTDVLSTAERISK 349


>gi|254683265|ref|ZP_05147126.1| flagellar motor switch protein FliM [Bacillus anthracis str.
           CNEVA-9066]
 gi|254734618|ref|ZP_05192330.1| flagellar motor switch protein FliM [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741027|ref|ZP_05198715.1| flagellar motor switch protein FliM [Bacillus anthracis str. Kruger
           B]
 gi|254755270|ref|ZP_05207304.1| flagellar motor switch protein FliM [Bacillus anthracis str.
           Vollum]
 gi|254759806|ref|ZP_05211830.1| flagellar motor switch protein FliM [Bacillus anthracis str.
           Australia 94]
          Length = 111

 Score = 72.7 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLK 254
             + IP  ++ +      S      +  +          K  Q+   +   I  +K T+ 
Sbjct: 1   MRIGIPFLSVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMG 60

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           ++  ++ G +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 61  EIEQIEEGDIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 104


>gi|85859178|ref|YP_461380.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
 gi|85722269|gb|ABC77212.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
          Length = 163

 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   +  + +++ L  G +I  +        +  N + I   E+  V +
Sbjct: 84  ILDIPLTLSVELGRCRMLISELLQLGQGSIIELVKLAGEPMDVYVNQRLIARGEVVVVNE 143

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD ++  ++  K
Sbjct: 144 KFGIRLTDIVSPAERVNK 161


>gi|94264048|ref|ZP_01287848.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
 gi|94266366|ref|ZP_01290065.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
 gi|93453018|gb|EAT03506.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
 gi|93455559|gb|EAT05746.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
          Length = 136

 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 28/76 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +      +  ++ L  G V+           +  N K +   E+  V +
Sbjct: 57  LLDVPLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGEVVVVNE 116

Query: 295 NYTIRITDRINFDQKS 310
            + IR+T+ I+   + 
Sbjct: 117 RFGIRVTEIISQADRI 132


>gi|218778862|ref|YP_002430180.1| flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760246|gb|ACL02712.1| Flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
           AK-01]
          Length = 119

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + ++I   +      +KD++ L  G V+           +  NGK     E+  V +
Sbjct: 40  ILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVVVNE 99

Query: 295 NYTIRITDRINFDQKSLKNFL 315
            + +R+TD ++  Q+ +K+  
Sbjct: 100 KFGVRLTDIVSP-QERIKSLR 119


>gi|91224471|ref|ZP_01259733.1| type III secretion protein [Vibrio alginolyticus 12G01]
 gi|91190813|gb|EAS77080.1| type III secretion protein [Vibrio alginolyticus 12G01]
          Length = 322

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 38/99 (38%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
             +L    K  N ++           QL V +   I  +  TL+ +  L+ G V      
Sbjct: 222 DQTLHIMEKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQP 281

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 L ANGK I  CEL  V ++  +R+ +     Q+
Sbjct: 282 VSKPVTLRANGKIIGECELVNVNEHLGVRVLELFGGTQE 320


>gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
 gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
          Length = 84

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 33/71 (46%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + +N+   +   + ++++++ L  G +I           L  NGK I   E+  + + 
Sbjct: 1   MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEC 60

Query: 296 YTIRITDRINF 306
           + +R+TD ++ 
Sbjct: 61  FGVRVTDIVDS 71


>gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
 gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
          Length = 116

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   I   +  +KD++ L  G ++      K    L  NG  I   E+   
Sbjct: 35  DLLMDVQVTLSVEIGRTRLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVES 94

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + +R+ D ++  ++  K
Sbjct: 95  AGQFGLRLIDVVSPSERLKK 114


>gi|51246521|ref|YP_066405.1| flagellar motor switch protein (FliN) [Desulfotalea psychrophila
           LSv54]
 gi|50877558|emb|CAG37398.1| probable flagellar motor switch protein (FliN) [Desulfotalea
           psychrophila LSv54]
          Length = 123

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            Y + + +   +   K  +KD++ +  G VI           L  N + I   E   +G 
Sbjct: 43  LYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDPLDLYVNSRLIARGEAVMIGD 102

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD ++   + 
Sbjct: 103 KFGIRLTDVVSASDRL 118


>gi|322421723|ref|YP_004200946.1| flagellar motor switch protein FliN [Geobacter sp. M18]
 gi|320128110|gb|ADW15670.1| flagellar motor switch protein FliN [Geobacter sp. M18]
          Length = 101

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  ++DV+ L  G V+           +  N K +   E   V  
Sbjct: 22  IMDIPLQLTVELGRTKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAVVVND 81

Query: 295 NYTIRITDRINFDQKS 310
            + IR+ D ++ +++ 
Sbjct: 82  KFGIRLLDIVSPNERV 97


>gi|84514808|ref|ZP_01002171.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
           SKA53]
 gi|84510967|gb|EAQ07421.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
           SKA53]
          Length = 102

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                +N+ ++      D        + V +   +   + ++ +++ L  G V+      
Sbjct: 2   KEQKMENQDKDPKGPETDKLR-ALENIEVEMSVEVGRTEISISELLRLNEGSVVELDRLA 60

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  NG  I   E+  VG+ + IR +D ++ + + 
Sbjct: 61  GEPLDILVNGTLIAKGEIVMVGERFGIRFSDIVDPENRV 99


>gi|28901395|ref|NP_801050.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153836038|ref|ZP_01988705.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
           AQ3810]
 gi|260362949|ref|ZP_05775818.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
 gi|260880236|ref|ZP_05892591.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|260895353|ref|ZP_05903849.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|260901178|ref|ZP_05909573.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|28809942|dbj|BAC62883.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|29423527|gb|AAO73589.1| lateral flagellar FliM-like motor switch protein [Vibrio
           parahaemolyticus]
 gi|149750792|gb|EDM61537.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
           AQ3810]
 gi|308085727|gb|EFO35422.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|308092442|gb|EFO42137.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|308109388|gb|EFO46928.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|308112168|gb|EFO49708.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
          Length = 272

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 87/305 (28%), Gaps = 48/305 (15%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQ 66
            +  PL   LL +          I     +L       L    +  +  + V+ S TS  
Sbjct: 10  SDIKPLDVELLGKPIH------IIRDKLENLISESCSSLTNELQNWLSTNKVEASLTSVD 63

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
             +FS  +    +                F+      ++ L +   GA+ E         
Sbjct: 64  LHRFSPAMMDKDQTS----THKHQEGGMVFVHGDTQTLVKLADRFYGANTERSVAT---- 115

Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           L+  + +L +R    I   L          E                            +
Sbjct: 116 LTASDLRLQERISRIIIGWLAPQDMWEA-CEYE------------------APRGIGLCV 156

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            +N+T E    S  L +    +                   DL +PF R      V ++ 
Sbjct: 157 QLNITFEGYQGSMYLKLDTHLIQTLIEQL------ELQSDVDLYEPFCRSLESTPVRLNV 210

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            ++ K   L DVV+LK   ++P          +S   + +++  +        +      
Sbjct: 211 VLSKKTMALSDVVSLKPDDIMPIELL--NTVPVSIGNQPLFTGRIAEQDGQLVL----IF 264

Query: 305 NFDQK 309
           N D++
Sbjct: 265 NPDKE 269


>gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 122

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 31/74 (41%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + + +   I      L++++ L    ++           +  NGK +   +L  + +NY
Sbjct: 44  DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIRENY 103

Query: 297 TIRITDRINFDQKS 310
            I+IT  I  +++ 
Sbjct: 104 GIKITQIITPEERM 117


>gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
           10542]
 gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
           10542]
          Length = 247

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R  Y + + +   I   K  ++ V+ L  G VI       + A L  NG+ I   E+  +
Sbjct: 169 RLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGSPADLMVNGRLIARGEVVVI 228

Query: 293 GKNYTIRITDRINFDQ 308
            ++Y +RIT+ ++  +
Sbjct: 229 DEDYGLRITEIVDLAE 244


>gi|315497631|ref|YP_004086435.1| flagellar motor switch protein flin [Asticcacaulis excentricus CB
           48]
 gi|315415643|gb|ADU12284.1| flagellar motor switch protein FliN [Asticcacaulis excentricus CB
           48]
          Length = 110

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 29/74 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + VNI   +     ++  ++ L  G V+    +      +  N + +   E+  V +
Sbjct: 34  VFDVPVNISAVLGKAYMSVSQLLKLGQGSVLELDRKVGEAIDIYVNNRLVARGEVVVVDE 93

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I  + 
Sbjct: 94  RLGVTMTEIIKSED 107


>gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 227

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 28/73 (38%)

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
                   + + +   +   +  L +++++  G VI           +  NG    + E+
Sbjct: 145 ALRGVLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEV 204

Query: 290 GRVGKNYTIRITD 302
             +G+ Y IRI +
Sbjct: 205 IAIGEKYGIRIVE 217


>gi|119953076|ref|YP_945285.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
 gi|119861847|gb|AAX17615.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
          Length = 114

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK I   E+  + +
Sbjct: 40  LMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVIAKGEVVVIDE 99

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 100 NFGVRITEIIKIKNE 114


>gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
           B316]
 gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
           B316]
          Length = 412

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 28/70 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +      + D++    G +I           +  NGK +   E+  + +
Sbjct: 342 IKDVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEVVVIEE 401

Query: 295 NYTIRITDRI 304
           ++ +R+T+ +
Sbjct: 402 SFGVRVTEIV 411



 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 62/185 (33%), Gaps = 5/185 (2%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-S 90
           +     +  +            ++  V+I+    +   + H+I +++   VF Q   +  
Sbjct: 58  KDAIGEVANISMGSSATTLYSLVNQKVNITTPQVELANWEHVIDNYERPCVFIQIKYTVG 117

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                 +    + V+ + + ++G     T  ++    LS + +    + +   +  L+  
Sbjct: 118 LDGTNILILKEHDVMVITDLMMGGDGTNTEGEIGELQLSAISEA-MNQMMGAAATSLSTM 176

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNR-LSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207
           I+   + SP      D+     +            I+  M + + V S+ + + P +   
Sbjct: 177 INQKVDISPPQATLLDMINDDPSDIAEFLTGTFVRISFKMQVGDLVDSTLMQLYPIDFAK 236

Query: 208 KTTLI 212
                
Sbjct: 237 TLKDT 241


>gi|187918151|ref|YP_001883714.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
 gi|119860999|gb|AAX16794.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
          Length = 114

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 40  LMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVVAKGEVVVIDE 99

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 100 NFGVRITEIIKIKNE 114


>gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 408

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  +++++    G +I           +  NGK I S E+  + +
Sbjct: 333 LLDVALEVSVELGRTKKKIREILDFSEGSIIELDKLVGEPIDILVNGKFIASGEVVVIDE 392

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RI   I  + + 
Sbjct: 393 NFGVRIKSIIKPENRI 408



 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 60/209 (28%), Gaps = 3/209 (1%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-K 78
           R +               +G +            ++  V I+    +      +I S   
Sbjct: 28  RSSSGHALTPDEIDALGEIGNINMGTAATTLFALLNHKVMITTPHVELLTAQELIDSVAP 87

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
           +    S       +    +    + V  + + ++G       +  N    +   +   + 
Sbjct: 88  DIVTVSVDYTVGLTGTNLLMLKESDVRIIADLMMGGVGLDNGEELNELHLSAISEAMNQM 147

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN--VASS 196
           I   S  ++Q      + SP     ++    K          V  ++  M I +  + S 
Sbjct: 148 IGSSSTSMSQMFDKKIDISPPHAVQFESAKDKIEQLISGENMVVKVSFRMQILDDIIDSE 207

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSE 225
            + I+P     +     ++S +   + S 
Sbjct: 208 LMQILPMSFAKELVDNLMNSMSTMGDVSS 236


>gi|27382113|ref|NP_773642.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
 gi|27355283|dbj|BAC52267.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
          Length = 116

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 29/76 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V +   +   K  + +++ L  G V+    R      +  N K +   E+  V
Sbjct: 40  EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRRVGEAIDIYVNNKLVARGEVVLV 99

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  ++
Sbjct: 100 EDKLGVTMTEIIKTER 115


>gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
 gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
 gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
 gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
          Length = 98

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R    + V +   +   + T++D++ L  G V+           +  NG  I   E+  V
Sbjct: 18  RLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMV 77

Query: 293 GKNYTIRITDRINFDQK 309
           G+ + IR    I  +++
Sbjct: 78  GERFGIRFGQIIEPEKR 94


>gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila]
          Length = 125

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            Q+ V +   +   + +L +++ ++ G VI           +  NG+ +   E+  V   
Sbjct: 47  RQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGEPLDVRVNGRLLAKGEVVVVNGK 106

Query: 296 YTIRITDRINFD 307
           Y +R+ D I+ +
Sbjct: 107 YGLRLVDVIDTN 118


>gi|167626140|ref|YP_001676434.1| hypothetical protein Shal_4235 [Shewanella halifaxensis HAW-EB4]
 gi|167356162|gb|ABZ78775.1| conserved hypothetical protein [Shewanella halifaxensis HAW-EB4]
          Length = 293

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/294 (10%), Positives = 81/294 (27%), Gaps = 28/294 (9%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+   L+     +      +E     +     + L  I ++       +S ++    
Sbjct: 17  DVRPV--ALIKEKLARSRLLMQLESCRRPIMDAVNELLTPITRQGHYGLSKVSLSA---- 70

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           K + +       +     +                +  L     G+    +     R+ S
Sbjct: 71  KANVVTPQLHHAWFLLSYNRIDLGWWL---IDKCTLDQLASGYYGSCSSALQSPM-RAPS 126

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E +L KR +  +   L           P  E   D   L+   N    +      +  
Sbjct: 127 QSEYRLVKRLMMAVIRTL-----------PVTEIDEDKLELELVMNTTPIKAPVCCELAF 175

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
              +   +    + +  L       ++ Q        +L    A +  Q+ +     +  
Sbjct: 176 PAAHAGPALCFYMAEHLLE-----LMAEQPSQYQADPELSLKLAHRLKQIPLRTLLELGH 230

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +   +  + +L +G ++P     +         + ++   +         ++T 
Sbjct: 231 QSMPVTSLQSLAVGDILPMNLHSRCPVT--VGKRPLFYATVHTHEGQMVAKLTQ 282


>gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17029]
          Length = 98

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R    + V +   +   + T++D++ L  G V+           +  NG  I   E+  V
Sbjct: 18  RLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMV 77

Query: 293 GKNYTIRITDRINFDQK 309
           G+ + IR    I  +++
Sbjct: 78  GERFGIRFGQIIEPEKR 94


>gi|203284198|ref|YP_002221938.1| flagellar motor switch protein [Borrelia duttonii Ly]
 gi|203287737|ref|YP_002222752.1| flagellar motor switch protein [Borrelia recurrentis A1]
 gi|201083641|gb|ACH93232.1| flagellar motor switch protein [Borrelia duttonii Ly]
 gi|201084957|gb|ACH94531.1| flagellar motor switch protein [Borrelia recurrentis A1]
          Length = 114

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 40  LMDVSMQVTVELGRTERKIKDILAMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 99

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 100 NFGVRITEIIKIKNE 114


>gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17025]
          Length = 98

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R    + V +   +   + T++D++ L  G V+           +  NG  I   E+  V
Sbjct: 18  RLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMV 77

Query: 293 GKNYTIRITDRINFDQK 309
           G+ + IR    I  +++
Sbjct: 78  GERFGIRFGQIIEPEKR 94


>gi|71282178|ref|YP_268252.1| flagellar motor switch protein [Colwellia psychrerythraea 34H]
 gi|71147918|gb|AAZ28391.1| flagellar motor switch protein FliN [Colwellia psychrerythraea 34H]
          Length = 131

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V I   +     ++++++ L  G V+           +  NG  I   E+  V
Sbjct: 50  DAILDIPVTISMEVGRSNISIRNLLQLNQGSVVELDRVAGESLDVLVNGTLIAHGEVVVV 109

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + IR+TD ++  ++  K
Sbjct: 110 NDKFGIRLTDVVSQVERIKK 129


>gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
 gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
          Length = 236

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 33/77 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    +++ +   +  ++  L DV+ L  G V+           + ANG+ I   E   +
Sbjct: 155 KLLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVI 214

Query: 293 GKNYTIRITDRINFDQK 309
            + + +RIT+  +   +
Sbjct: 215 DEQFGVRITNLASEGHR 231


>gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 101

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V   + +     T+K+++ L++G VI           L  N +     E+   
Sbjct: 16  DELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVMVY 75

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 76  EKNLAIRINEILDSK 90


>gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
 gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
          Length = 115

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 30/75 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            + + + V +   +   +  + D++ L  G V+    +      +  N + +   E+  V
Sbjct: 40  EQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVARGEVVLV 99

Query: 293 GKNYTIRITDRINFD 307
            +   + +T+ I  D
Sbjct: 100 DERLGVTMTEIIKND 114


>gi|302387781|ref|YP_003823603.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1]
 gi|302198409|gb|ADL05980.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium saccharolyticum WM1]
          Length = 456

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
             +  +    + +  +        + + +   I   +  +K+++    G ++        
Sbjct: 361 PQNSLREGEANYEEQEENRELIMGVPLEVSVEIGRTRKLVKEILEFTKGSLVILDKLAGE 420

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              L  NG+ I   ++  V  N+ IRIT+    + +
Sbjct: 421 QVDLYVNGRCIAKGDVVVVDDNFGIRITEITKRNAE 456



 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/185 (10%), Positives = 56/185 (30%), Gaps = 4/185 (2%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI-IHSFKENFVFSQA 86
                     +  +            ++  VDI+    +        I + +        
Sbjct: 7   SAFEIDAIGEILNISLGASATAVSTMLNARVDITTPVVRVLTKDEFEISNLEPAIGVEIT 66

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
            +S  S +  +    + V  +++ L+G          N    +   ++  + +   +  L
Sbjct: 67  YISGLSGSNLMLLKRHDVKVIVDMLMGMETPEEEFELNELNISAICEVMNQMMGSSATAL 126

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE-FVTTINMNMTIEN-VASSFVLIIPQE 204
           ++ +S T   S     F   +          +E  +  +   + I + + S F+ ++P  
Sbjct: 127 SEFLSKTVNISTPTS-FEVGNINDFKDKYYHDENLMVVVGFTLKIADQLESEFINVMPPS 185

Query: 205 TLLKT 209
              + 
Sbjct: 186 LAKEL 190


>gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630]
 gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-63q42]
 gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC
           43255]
 gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile]
          Length = 124

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   L + +   I   K TL+D++ L  G +I           +  + K +   ++  V
Sbjct: 43  QRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLAYGKVVVV 102

Query: 293 GKNYTIRITDRINFDQKSLKNFL 315
             N+ ++IT  ++ ++  +K+ +
Sbjct: 103 DLNFGVKITSIVS-EEDMVKSLV 124


>gi|328469329|gb|EGF40275.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
           10329]
          Length = 272

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 83/280 (29%), Gaps = 38/280 (13%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           I     +L       L    +  +  + V+ S TS    +FS  +    +          
Sbjct: 27  IRDKLENLISESCSSLTNELQNWLSTNKVEASLTSVDLHRFSPAMMDKDQTS----THKH 82

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                 F+      ++ L +   GA+ E         L+  + +L +R    I       
Sbjct: 83  QEGGMVFVHGDTQTLVKLADRFYGANTERSVAT----LTASDLRLQERISRIIIG----- 133

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
               Q+     E                 +    + +N+T E    S  L +    +   
Sbjct: 134 WLAPQDMWEACEYE------------APRDIGLCVQLNITFEGYQGSMYLKLDTHLIQTL 181

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                           DL +PF R      V ++  ++ K   L DVV+LK   ++P   
Sbjct: 182 IEQL------ELQSDVDLYEPFCRSLESTPVRLNVVLSKKTMALSDVVSLKPDDIMPIEL 235

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                  +S   + +++  +        +      N D++
Sbjct: 236 L--NTVPVSIGNQPLFTGRIAEQDGQLVL----IFNPDKE 269


>gi|91223207|ref|ZP_01258473.1| putative flagellar motor switch protein [Vibrio alginolyticus
           12G01]
 gi|91192020|gb|EAS78283.1| putative flagellar motor switch protein [Vibrio alginolyticus
           12G01]
          Length = 272

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 88/299 (29%), Gaps = 38/299 (12%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL-DVDISYTSCQSGKF 70
           P+    L  +         I +   +L       L    +  +    V+ S TS    +F
Sbjct: 8   PISDSQLLDVELLGKPIHIIREKLDNLISESCSNLTTELQNWLSTGKVEASLTSVDLHRF 67

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
           + +    ++   +            FI  + + +I L +   GAS E         L+  
Sbjct: 68  TSVEMDKEQTSTYQHQE----GGMVFIHGNPHTLIKLADRFYGASAERSAAT----LTAS 119

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           + +L +R    I            E     E                      + +N+  
Sbjct: 120 DLRLQERISRIIIG-----WLAPGEMWDTGEYE------------TPRGIGINVQLNIAF 162

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
           ++   S  L +    +                   DL  PF R      V ++  ++ KK
Sbjct: 163 DDHQGSIHLKLDGHLIQTLIEQL------ELQPDTDLFQPFCRSLETTPVRLNVVLSKKK 216

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             L DVV L+   ++P          +S   + +++  +        +      N D++
Sbjct: 217 MPLSDVVGLQPNDILPIELL--NTVPVSIGNQSLFTGRIAEQDGQLVL----IFNPDKE 269


>gi|254228244|ref|ZP_04921673.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp.
           Ex25]
 gi|262394134|ref|YP_003285988.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25]
 gi|151939317|gb|EDN58146.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp.
           Ex25]
 gi|262337728|gb|ACY51523.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25]
          Length = 322

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K  N ++           QL V +   I  +  TL+ +  L+ G V            L
Sbjct: 229 EKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTL 288

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            ANGK I  CEL  V ++  +R+ +     Q+
Sbjct: 289 RANGKIIGECELVNVNEHLGVRVLELFGGTQE 320



 Score = 37.3 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR--EKTCAILSANGKEIY 285
                 +   L V +   +     TL +  +L++G VI F      K  AI   + + ++
Sbjct: 159 SAALQARHLALPVWLS--LGRTHLTLSEFNSLELGDVIFFDDGYIAKQQAIFQVSNQNLW 216

Query: 286 SCEL 289
            C+L
Sbjct: 217 RCQL 220


>gi|197120187|ref|YP_002140614.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
 gi|253702496|ref|YP_003023685.1| flagellar motor switch protein FliN [Geobacter sp. M21]
 gi|197089547|gb|ACH40818.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
 gi|251777346|gb|ACT19927.1| flagellar motor switch protein FliN [Geobacter sp. M21]
          Length = 101

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  ++DV+ L  G V+           +  N K +   E   V  
Sbjct: 22  IMDIPLQLTVELGRSKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAVVVND 81

Query: 295 NYTIRITDRINFDQKS 310
            + IR+ D ++ +++ 
Sbjct: 82  KFGIRLLDIVSPNERV 97


>gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
 gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
          Length = 137

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
             +   DL          + + +  R+      +KD++ L  G ++           +  
Sbjct: 44  DVSTDGDLPKNL-ELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVELEKEADDPLEIYV 102

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           N + +   E+  +     IRITD ++  ++ 
Sbjct: 103 NDRLLAYGEVVMIKDKLGIRITDIVSLKERL 133


>gi|148266211|ref|YP_001232917.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
 gi|146399711|gb|ABQ28344.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
          Length = 103

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 216 SQNKSENQSEDLIDPFA----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             N+  +  E   +            + + +   +   K  +KD++ L  G V+      
Sbjct: 1   MVNEKIDSDELNNNSLEVKNLEFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLA 60

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  N K +   E   +   + IR+ D ++ +++ 
Sbjct: 61  GEPLDVFVNSKLVARGEAVVINDKFGIRLVDIVSPNERV 99


>gi|222053614|ref|YP_002535976.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
 gi|221562903|gb|ACM18875.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
          Length = 100

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 217 QNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
             ++    E              + + +   +   K  +KD++ L  G V+         
Sbjct: 1   MTETGELEEQKNAEMKNLDFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAGEP 60

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
             +  N K +   E   +   + IR+ D ++ +++  K  
Sbjct: 61  LDVFVNSKLVARGEAVVINDKFGIRLVDIVSPNERVEKAL 100


>gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
 gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
          Length = 117

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   I   K  +KD++ L  G ++      K    L  NG  I   E+   
Sbjct: 36  DLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVES 95

Query: 293 GKNYTIRITDRINFDQKSLK 312
              + +R+ D ++  ++  K
Sbjct: 96  AGQFGLRLIDVVSPSERLKK 115


>gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-66c26]
 gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP
           107932]
 gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-76w55]
 gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-97b34]
 gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-37x79]
 gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
 gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-32g58]
 gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
          Length = 124

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   L + +   I   K TL+D++ L  G +I           +  + K +   ++  V
Sbjct: 43  QRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELNTLADQDVEILIDNKVLAYGKVVVV 102

Query: 293 GKNYTIRITDRINFDQKSLKNFL 315
             N+ ++IT  ++ ++  +K+ +
Sbjct: 103 DLNFGVKITSIVS-EEDMVKSLV 124


>gi|39995530|ref|NP_951481.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
 gi|39982293|gb|AAR33754.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
 gi|298504530|gb|ADI83253.1| flagellar motor switch protein FliN [Geobacter sulfurreducens
           KN400]
          Length = 101

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 36/93 (38%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K E +  +L          + + +   +   K  +KDV+ L  G V+           +
Sbjct: 5   TKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDV 64

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             N K +   E   V + + +R+ D ++ +++ 
Sbjct: 65  FVNSKLVARGEAVVVNEKFGVRLVDIVSPNERV 97


>gi|328468942|gb|EGF39902.1| type III secretion system protein [Vibrio parahaemolyticus 10329]
          Length = 321

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V  +
Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGTQE 319


>gi|260365111|ref|ZP_05777682.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus K5030]
 gi|260876606|ref|ZP_05888961.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AN-5034]
 gi|260895033|ref|ZP_05903529.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus Peru-466]
 gi|260900956|ref|ZP_05909351.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ4037]
 gi|308086011|gb|EFO35706.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus Peru-466]
 gi|308093588|gb|EFO43283.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AN-5034]
 gi|308110725|gb|EFO48265.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ4037]
 gi|308111696|gb|EFO49236.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus K5030]
          Length = 321

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V  +
Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGTQE 319


>gi|153836164|ref|ZP_01988831.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ3810]
 gi|149750439|gb|EDM61184.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ3810]
          Length = 321

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V  +
Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGTQE 319


>gi|28898445|ref|NP_798050.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806662|dbj|BAC59934.1| putative translocation protein in type III secretion [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 328

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V  +
Sbjct: 253 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 312

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 313 LGVRVLELFGGTQE 326


>gi|124516301|gb|EAY57809.1| flagellar motor switch protein FliN [Leptospirillum rubarum]
 gi|206603144|gb|EDZ39624.1| flagellar motor switch protein FliN [Leptospirillum sp. Group II
           '5-way CG']
          Length = 125

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +  R+   +  +KD++ L  G V+           +  N K +   E+  V  
Sbjct: 47  LLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEVVMVND 106

Query: 295 NYTIRITDRINFDQKS 310
            Y +R+TD ++  ++ 
Sbjct: 107 KYGVRLTDIVSPIERI 122


>gi|254417867|ref|ZP_05031591.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
 gi|196184044|gb|EDX79020.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
          Length = 110

 Score = 70.8 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 29/74 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            +++ VNI   +     ++  ++ L  G V+    +      +  N + I   E+  V  
Sbjct: 34  VFEVPVNISAVLGKSHMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLIARGEVVVVDD 93

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I  + 
Sbjct: 94  RLGVTMTEIIKTED 107


>gi|262284526|gb|ACY41063.1| VscQ [Vibrio alginolyticus]
          Length = 322

 Score = 70.8 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K  N ++           QL V +   I  +  TL+ +  L+ G V            L
Sbjct: 229 EKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTL 288

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            ANGK I  CEL  V ++  +R+ +     Q+
Sbjct: 289 RANGKIIGECELVNVNEHLGVRVLELFGGTQE 320



 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR--EKTCAILSANGKEIY 285
                 +   L V +   +     TL +  +L++G VI F      K  AI   + + ++
Sbjct: 159 SAALQARHLALPVWLS--LGRTHLTLSEFNSLELGDVIFFDDGYIAKQQAIFQVSNQNLW 216

Query: 286 SCEL 289
            C+L
Sbjct: 217 RCQL 220


>gi|146342732|ref|YP_001207780.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
 gi|146195538|emb|CAL79565.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
          Length = 115

 Score = 70.8 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 29/77 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V +   +   K  + +++ L  G V+    +      +  N + +   E+  V
Sbjct: 39  EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLV 98

Query: 293 GKNYTIRITDRINFDQK 309
                + +T+ I  D+ 
Sbjct: 99  EDKLGVTMTEIIKSDRN 115


>gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 315

 Score = 70.8 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 103/293 (35%), Gaps = 33/293 (11%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF--SQASLSSWSSNFFIGCSNNLVI 105
            I    +  +V ++ +  +      +        V    + + +  +++  +  S   ++
Sbjct: 24  NILGSLLGRNVKMTVSGVEETDTDGLAECLPHFNVVIEGRRTANGLTADQLLVFSKEDMV 83

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
            L   ++G   +T   L   +LST+++  ++   A ++ + +       E    +  + +
Sbjct: 84  RLTNYIMGVPIDTDSPLDEIALSTLKEVASQCMTAAVAELNDFLGRDMGEFITRISAYDN 143

Query: 166 IDYLKKNTNR-LSNEFVTTINMNMTIENV-----------ASSFVLIIPQETLLKTTLIS 213
            + ++  T           + ++ TI+ V               VL IP           
Sbjct: 144 TERVQDLTRVWGMGSPFVIVRLHYTIDGVVDSDAYILASQTMRQVLGIPV-MEEMPMPAI 202

Query: 214 LSSQNKSENQ------------------SEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
                K +                      + I    +K   + +++  RI     ++KD
Sbjct: 203 QEHMGKPKEAVSVQEVAFPEFKYTPLQYDREQIGDDKKKLLDITLDVSVRIGSTVCSVKD 262

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           V++ K GQV+    +  + A + ANG+ I   ++   G ++  RI + +   +
Sbjct: 263 VLSFKEGQVLVLDKQAGSPADVVANGELIGRGDVLVSGDHFGARIIEIVGKRE 315


>gi|189426341|ref|YP_001953518.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
 gi|189422600|gb|ACD96998.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
          Length = 99

 Score = 70.8 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 36/93 (38%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +KS+    +           + + +   +   K  +KD++ L  G V+           +
Sbjct: 3   DKSDATEAEQEKKNLEFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDI 62

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             N K +   E   V + + +R+ D ++ +++ 
Sbjct: 63  FVNSKLVARGEAVVVNEKFGVRLVDIVSPNERV 95


>gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 103

 Score = 70.8 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                ++V+    +     T++ ++ L+ G VI           L  N K     E+   
Sbjct: 18  ENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVELYINNKIFGKGEVMVY 77

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 78  EKNLAIRINEILDSK 92


>gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 192

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTY-------QLNVNIDTRINLKKTTLKDVVTLKIGQ 263
            I    + +S+ + +D                  L + I   I  K  T++++V L    
Sbjct: 76  PIKDQPKIESKEEKKDRFQNLPADIEKKLNLLLDLPITITVEIGSKVMTIEEIVKLSPSS 135

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318
           V+           L  NG  +   EL +V   + I+I + +  +++   N + K+
Sbjct: 136 VVDLDRFITEPIDLKVNGVLVAKGELYQVEDQFAIKIKEILTKEERV--NLISKQ 188


>gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
           baltica SH 1]
 gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
           baltica SH 1]
 gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula
           baltica WH47]
          Length = 141

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 33/73 (45%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               ++ +++   +   +  L++V+ L+ G V+           +  NG+ I   E+  +
Sbjct: 66  DLLGEVEMDLRIELGRTQMRLEEVLRLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVM 125

Query: 293 GKNYTIRITDRIN 305
             N+ +R+T+ + 
Sbjct: 126 NDNFCVRVTELVG 138


>gi|27904580|ref|NP_777706.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46395830|sp|Q89AZ3|FLIN_BUCBP RecName: Full=Flagellar motor switch protein FliN
 gi|27903977|gb|AAO26811.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 134

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V++   +   K T+KD++ L+   ++           +  NG  I + EL     
Sbjct: 57  IMDVPVHLTIEVGTVKITIKDLLELRSKSILVLDKHAGDPLNILVNGYVIATGELVVTEN 116

Query: 295 NYTIRITDRIN 305
            Y IRI + I+
Sbjct: 117 KYGIRIINIID 127


>gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 125

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            Q+ V +   +   + +L +++ ++ G VI           +  NG+ +   E+  V   
Sbjct: 47  RQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGETLDVRVNGRLLAKGEVVVVNGK 106

Query: 296 YTIRITDRINFD 307
           Y +R+ D I+ +
Sbjct: 107 YGLRLVDVIDTN 118


>gi|254459518|ref|ZP_05072934.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083]
 gi|206676107|gb|EDZ40594.1| conserved hypothetical protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 351

 Score = 70.4 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 74/265 (27%), Gaps = 14/265 (5%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L +   +   L + ++         + ++    E++      L    S   +      +I
Sbjct: 24  LARAADQAFSLALRVNSIRQSRLDLADVVDQIDEDWALFPL-LHDDGSVGVMCLEPACII 82

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS--TTQESSPNLEDF 163
             +E               R L+  +K LA   +       ++ +    T   +      
Sbjct: 83  AFVETQTMGRVSA-AVAQPRRLTQTDKALAVAFLEGFLRRFDEALKGAPTAYWTRGYRTE 141

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
             +        +L        +M + +        +       L           K +  
Sbjct: 142 DAVATRHMVVLQLDGAEYRGFDMQIEVVEAERPINM----RLFLPIKEKFAKQNAKKKPT 197

Query: 224 SE-----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-L 277
                  +      R     NV +D  +      L ++ TL+ G ++P           +
Sbjct: 198 KTGVALLESEHTIRRSAMAANVEMDAIMCKVMLPLSELNTLQPGHLVPLPQDAAKQVHLV 257

Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302
            ++G+   S  LG++     +++  
Sbjct: 258 DSSGRSAQSVRLGQLHGMRAVKLLH 282


>gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 111

 Score = 70.4 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V   + +   + ++ +++ LK G +I              NG+ +   E+    K
Sbjct: 29  LLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNGRILGRGEVMVYEK 88

Query: 295 NYTIRITDRINF 306
           N  IRI + ++ 
Sbjct: 89  NLAIRINEVLDS 100


>gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
           98-5489]
 gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
           98-5489]
          Length = 119

 Score = 70.4 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 211 LISLSSQNKSENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                 Q   +      ++           + V     +   K  LK+++  + G +I  
Sbjct: 6   FTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVLFHAELGSTKIALKEILQFEKGSIIDL 65

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                    +  NG+ +   E+    KN  IR+ + ++ +
Sbjct: 66  QKPAGESVEIYINGRIVGKGEVMVYEKNLAIRVNEVLDSN 105


>gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 112

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 40/92 (43%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +S    E +     R    ++V++   +   +  ++D++ L  G VI           + 
Sbjct: 18  ESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVIELDRLAGDPLDIL 77

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           ANG  I   E+  VG+ + IR ++ +  +++ 
Sbjct: 78  ANGTMIAKGEVVMVGERFGIRFSEIVAPEKRM 109


>gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum
           ferrodiazotrophum]
          Length = 125

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I  R+   +  +KD++ L  G V+           +  N + +   ++  V  
Sbjct: 47  LLDVPLTISVRVGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVVLVND 106

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IR+TD ++   +  K
Sbjct: 107 KYGIRLTDIVSPIDRVKK 124


>gi|148253397|ref|YP_001237982.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
 gi|146405570|gb|ABQ34076.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
          Length = 115

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 29/77 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V +   +   K  + +++ L  G V+    +      +  N + +   E+  V
Sbjct: 39  EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLV 98

Query: 293 GKNYTIRITDRINFDQK 309
                + +T+ I  D+ 
Sbjct: 99  EDKLGVTMTEIIKSDRN 115


>gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas
           ingrahamii 37]
 gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas
           ingrahamii 37]
          Length = 120

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V++   +  K  TLK+++ +K   V+           +  NGK     E+     
Sbjct: 46  LNDIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVANG 105

Query: 295 NYTIRITDRINFDQK 309
           +Y ++ITD +N D  
Sbjct: 106 HYGVKITDIVNKDID 120


>gi|78224291|ref|YP_386038.1| flagellar motor switch FliN [Geobacter metallireducens GS-15]
 gi|78195546|gb|ABB33313.1| Flagellar motor switch FliN [Geobacter metallireducens GS-15]
          Length = 101

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  +KDV+ L  G V+           +  N K +   E   V +
Sbjct: 22  ILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAVVVNE 81

Query: 295 NYTIRITDRINFDQKS 310
            + IR+ D ++ +++ 
Sbjct: 82  KFGIRLVDIVSPNERV 97


>gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
           3645]
 gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
           3645]
          Length = 212

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +      L+DV+ +  G V+           +  NG+ I   E+  +
Sbjct: 135 DLVRDVELDVKIELGRTNMYLEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVL 194

Query: 293 GKNYTIRITDRINFD 307
             N+ +RI + I  D
Sbjct: 195 NDNFCVRIAELIVGD 209


>gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
 gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
          Length = 190

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 29/78 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   I      L++++ L    ++           L  NGK I   EL  V
Sbjct: 105 DLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGELYTV 164

Query: 293 GKNYTIRITDRINFDQKS 310
             ++ I+IT  I   ++ 
Sbjct: 165 EDHFGIKITSIITVQERM 182


>gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
 gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
          Length = 329

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 87/289 (30%), Gaps = 29/289 (10%)

Query: 18  LARLTGKLGDKKTIEKI-SSSLGYLYKKF---LPKIFKEKMDLDVDISYTS--CQSGKFS 71
           +  L G   + K  +     ++     K    L    +E       +   S         
Sbjct: 11  IDSLLGGNAEDKQKDNTYGDAINENVSKLFDLLNSSIEEVTKTAFSLEVVSKFIDLNIIQ 70

Query: 72  HIIHSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
               SF    V +   +    +S F +  +      L + +L    E   +L +  L  +
Sbjct: 71  KNEISFDGKIVINVDVTTGEKNSKFVVLINKKFASILSDLMLMGPGEAKEELESEDLDAL 130

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK---------KNTNRLSNEFV 181
           ++ L  +    +S  + + IS              ++                 + N+ +
Sbjct: 131 KE-LFSQIFGHLSTQVKEAISPFISFEVKEATKEPLEIDSDKLYKSQYDVAIPNIENDLI 189

Query: 182 TTINMNMTIENV-----ASSFVLII----PQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
             I+  + ++ +          +I     P + + +      + Q        +      
Sbjct: 190 DIISPKIELDEIFKQQEPQEETIIEHEEVPFKEVEEELFKEAAPQASKATL--EAPKNL- 246

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                +++++  RI  K   +KD++ LK G +I      +    +  NG
Sbjct: 247 NLIMDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVNG 295


>gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
 gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
 gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
 gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
          Length = 115

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 30/75 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            + + + V +   +   +  + D++ L  G V+    +      +  N + +   E+  V
Sbjct: 40  EQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVARGEVVLV 99

Query: 293 GKNYTIRITDRINFD 307
            +   + +T+ I  D
Sbjct: 100 EERLGVTMTEIIKND 114


>gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58]
 gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58]
          Length = 111

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 33/97 (34%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
              +   +  S+   +   +    + V +   +      L +V+ L  G ++    +   
Sbjct: 8   PRMERPEDPVSKMTNNRQFKLLADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELDRQADD 67

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              +  NG  I   E+  V   Y IRI D    + + 
Sbjct: 68  LLDIMVNGALIAKGEVVTVNGRYGIRIVDIAATENRL 104


>gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
 gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
          Length = 127

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
              ++ +   +     + V+I   +  K   L +++ LK G V+     E     +  NG
Sbjct: 41  GADKEHVSNIS-LLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKING 99

Query: 282 KEIYSCELGRVGKNYTIRITDRINF 306
               + E+      Y +R+   I  
Sbjct: 100 TAFGTGEIVSKNGQYGVRLLSIIKK 124


>gi|258404715|ref|YP_003197457.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
           5692]
 gi|257796942|gb|ACV67879.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
           5692]
          Length = 109

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 31/73 (42%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + + +   +   +  +KD++ L+ G VI           +  N + I   E   V +   
Sbjct: 33  VPLQVSAELGTTRILVKDLLQLREGSVIELEKLAGEPLDVFVNSRLIARAEAVVVNEKIG 92

Query: 298 IRITDRINFDQKS 310
           +R+TD ++  ++ 
Sbjct: 93  LRLTDVVSPSERL 105


>gi|83591881|ref|YP_425633.1| flagellar motor switch protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574795|gb|ABC21346.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
           rubrum ATCC 11170]
          Length = 115

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 27/76 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              Y + V +   +      +  ++ L  G V+    +      +  N + +   E+  V
Sbjct: 39  EAVYDIPVQVSAVLGKAHMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 98

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  D+
Sbjct: 99  DDRLGVTMTEIIKSDR 114


>gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 102

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 18  EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 78  EKNLAIRINEILDSK 92


>gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228]
 gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20]
 gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228]
 gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20]
          Length = 102

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 18  EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 78  EKNLAIRINEILDSK 92


>gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
 gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
          Length = 246

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 6/156 (3%)

Query: 154 QESSPNLEDFYDIDYLK--KNTNRLSNEFVTTIN---MNMTIENVASSFVLIIPQETLLK 208
               P+L+        +         +  V  I    + + +E       L++P+  L  
Sbjct: 86  AALQPSLDAAATALGARSGAARQVDPDTVVDEIAEPFVIVPLEGSDVVAALLVPEALLAH 145

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               + +    S               + +++ +   I   + T+++++ L  G V+   
Sbjct: 146 PADDTPALPTTSAAAPTGDRRGI-EMLHGVDMEVTVEIGRARMTVRELLDLAPGAVLELD 204

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               + A L  NG+ I   E+  + +++ +RIT+ +
Sbjct: 205 RAAGSPADLLVNGRLIARGEVVVIDEDFGLRITEIV 240


>gi|90422463|ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB18]
 gi|90104477|gb|ABD86514.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB18]
          Length = 116

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 218 NKSENQSEDLIDPFA---RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                  ++ +   A      + + V +   +   K  + +++ L  G V+    +    
Sbjct: 22  GDVGYSDDEQVSRIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEA 81

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             +  N + +   E+  V     + +T+ I  ++
Sbjct: 82  IDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER 115


>gi|254461964|ref|ZP_05075380.1| flagellar motor switch protein FliN [Rhodobacterales bacterium
           HTCC2083]
 gi|206678553|gb|EDZ43040.1| flagellar motor switch protein FliN [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 99

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R    + V +   +   + T+ +++ L  G V+           +  NG  I   E+  V
Sbjct: 19  RALENIEVQMSIEVGRTEITIANLLRLNEGSVVELDRLAGEPLDILVNGTMIAKGEVVMV 78

Query: 293 GKNYTIRITDRINFDQKS 310
           G+ + IR +D ++ +++ 
Sbjct: 79  GERFGIRFSDIVDPEKRV 96


>gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92]
 gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92]
          Length = 105

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 28/75 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   ++V+    +     ++ +++  + G VI           L  N +     E+   
Sbjct: 20  DELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVY 79

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 80  EKNLAIRINEILDSK 94


>gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10]
 gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris
           MCS10]
          Length = 99

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 37/93 (39%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           +++++ +    +++    +   + V I   +   K  ++  + +  G VIP    E    
Sbjct: 2   AKHQARDDDPQVLECDVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQV 61

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            + AN   I   ++   G    + IT   + ++
Sbjct: 62  WILANNHPIARGDVVIQGDRIAVSITGPADANE 94


>gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium
           capsulatum ATCC 51196]
          Length = 248

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 28/76 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+   R   ++  +++++    G V+           L    K +   E+  V
Sbjct: 164 DLLLDIEVDASLRFGSRELAIRELLETGPGDVLELDRHITDPVDLVVGDKIVARGEVVLV 223

Query: 293 GKNYTIRITDRINFDQ 308
             N+ +R+T+     +
Sbjct: 224 NGNFGLRVTEVAEPKK 239


>gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
           DG1235]
 gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
           DG1235]
          Length = 82

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +  ++   +  +++V+ L  G VI      K    L  N K I   E+  V  
Sbjct: 11  LMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAYGEVVVVED 70

Query: 295 NYTIRITDRINF 306
           N+ I+IT+  N 
Sbjct: 71  NFGIKITEMANG 82


>gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
          Length = 110

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            + + + V +   +   +  + D++ L  G V+    +      +  N + +   E+  V
Sbjct: 36  EQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNNRLVARGEVVLV 95

Query: 293 GKNYTIRITDRINFD 307
                + +T+ +  +
Sbjct: 96  EDRLGVTMTEIVKGE 110


>gi|225569964|ref|ZP_03778989.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
           15053]
 gi|225161434|gb|EEG74053.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
           15053]
          Length = 460

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +   +  +L +        + + +   I   K  +KDV+ L  G ++           L 
Sbjct: 367 EQSAEETELQESNLELIMGVPLEVSVEIGRTKKLVKDVLELNKGSLVVLDKLAGEQVDLF 426

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307
            NG+ I   ++  V  N+ IRIT+ +  +
Sbjct: 427 VNGQCIAQGDVVVVDDNFGIRITEILADE 455



 Score = 41.9 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 49/178 (27%), Gaps = 10/178 (5%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI-IHSFKENFVFSQASLSS 90
                 +  +            +D  VDI+    Q          + +         +  
Sbjct: 11  IDAIGEILNISLGASATAISTMLDARVDITTPIVQVRNKEEFEFGNLEPAVGVEIIYIEG 70

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            + +  +    N V  ++E L+G             L  +          Q+       +
Sbjct: 71  LTGSNIMLLKRNDVRVIVEMLMG----MEIPEEEFELDEMNISAICEVKNQMMGASATAL 126

Query: 151 STTQE--SSPNLEDFYDIDYLKKNTN--RLSNEFVTTINMNMTIEN-VASSFVLIIPQ 203
           S       + +    +DI+  ++           +  I   + I + + S F+ ++P 
Sbjct: 127 SELLGKAVNISTPVSFDIESPEQFKEKYFTEESPMVVIGFTLRIADKMESEFMNLMPI 184


>gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium
           SS3/4]
          Length = 445

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +S                ++ + I   I   K  +KD++    G ++         A L 
Sbjct: 351 ESSGSENGEESANQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLVVLDKMAGEQADLY 410

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307
            NG+ +   ++  V  N+ IRITD +  D
Sbjct: 411 VNGQCVARGDIVVVEDNFGIRITDIVTRD 439


>gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
 gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni]
 gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221]
 gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 102

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 18  EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 78  EKNLAIRINEILDSK 92


>gi|39654324|pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative
           Flagelar Motor Switch Protein Flin (Tm0680) From
           Thermotoga Maritima At 1.85 A Resolution
 gi|39654325|pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative
           Flagelar Motor Switch Protein Flin (Tm0680) From
           Thermotoga Maritima At 1.85 A Resolution
          Length = 96

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   + TLK V+    G +I           +  NGK I   E+  +
Sbjct: 14  ELLLDIPLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVI 73

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ +RIT+ ++  ++ 
Sbjct: 74  DENFGVRITEIVSPKERL 91


>gi|91978306|ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB5]
 gi|91684762|gb|ABE41064.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB5]
          Length = 116

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 38/109 (34%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           +P   L       L+    +E +    +       + + V +   +   K  + +++ L 
Sbjct: 8   VPLPDLNSADAPLLADVGYNEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVGELLKLG 67

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            G V+    R      +  N + +   E+  V     + +T+ I  ++ 
Sbjct: 68  PGAVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERN 116


>gi|23013050|ref|ZP_00053002.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magnetotacticum MS-1]
          Length = 94

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 27/78 (34%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
               Y ++V +   +      +  ++ L  G V+    +      L  N K +   E+  
Sbjct: 17  REAVYDVSVELSAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKRVCRAEVVV 76

Query: 292 VGKNYTIRITDRINFDQK 309
           V  +  + IT+ +     
Sbjct: 77  VEDHLAVTITEVLKRAAD 94


>gi|320354330|ref|YP_004195669.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
           2032]
 gi|320122832|gb|ADW18378.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
           2032]
          Length = 126

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 37/106 (34%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           T     L+       +       +       + + + +   +   +  LKD++ +  G V
Sbjct: 17  TEETAELLKEEQPQPAGRGDHAPLTRELEFLFDVPLQVSVEVGRARILLKDLLQMGEGYV 76

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +           L  N + I   E  +VG  + I++T+ ++   + 
Sbjct: 77  VELDKLAGEPLDLYVNARLIARGEAVKVGDKFGIKLTEVVSQSDRI 122


>gi|304412522|ref|ZP_07394128.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS183]
 gi|307307181|ref|ZP_07586919.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           BA175]
 gi|304349164|gb|EFM13576.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS183]
 gi|306910420|gb|EFN40851.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           BA175]
          Length = 293

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 86/291 (29%), Gaps = 21/291 (7%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
           R    + +K    ++   L     + L       +   +   + +      +        
Sbjct: 19  RPIMLVQEKLARTRLLQQL-EQLHRPLIDAINNILSPLLRQGHPAVSGSTLTEPRTPVIP 77

Query: 80  NFVFSQASLSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
              ++   L    +   +       +  L  N  G +   +     R+ S  E +LAK+ 
Sbjct: 78  EHCYAWFVLKHQQNTLGYWRIDRCTLDQLASNYYGNTSTPLSSPL-RNPSQSEFRLAKKL 136

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
           +  +   L           PN     +   ++     +        + N T  ++    +
Sbjct: 137 LLSVVDEL-----------PNSTIDTNTLEVELIKGHMPLTVSAVWSFNFTNGSLTPPML 185

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
             +      +  L  L+ Q K    S DL    A     L + +   +      ++ +  
Sbjct: 186 FCLT-----EHLLGHLAEQPKKSEISADLPAKLAVWLKSLPIKMQLTLGQHSIPVQSLSQ 240

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           LK G ++P     KT   +      ++   +         ++T  +  +++
Sbjct: 241 LKTGDILPINLYPKTLLSI--GNTTLFHASVHSHEGQMVAKLTQDVYQNEE 289


>gi|283780013|ref|YP_003370768.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi
           DSM 6068]
 gi|283438466|gb|ADB16908.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi
           DSM 6068]
          Length = 329

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R   ++ V +   +   +  LK +V L  G +I F     +   L     E+   E  +V
Sbjct: 238 RSILRIEVPVRVTLATTQLPLKRIVELGPGSIIQFEKPCDSELSLQVGEHEVAIGEAVKV 297

Query: 293 GKNYTIRITDRINFDQKS 310
           G+ + +R+T  +   ++ 
Sbjct: 298 GEKFGLRLTSMVMPPERF 315


>gi|254440105|ref|ZP_05053599.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
           307]
 gi|198255551|gb|EDY79865.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
           307]
          Length = 98

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 33/78 (42%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R    + V +   +     ++ +++ L  G V+           +  NG +I   E+  V
Sbjct: 18  RALENIEVEMSIEVGRTDISISELLRLNEGSVVELNRLAGEPLDILVNGTKIAKGEVVMV 77

Query: 293 GKNYTIRITDRINFDQKS 310
           G+ + IR ++ ++ + + 
Sbjct: 78  GERFGIRFSEIVDPESRV 95


>gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 109

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + VNI   +     T+  ++ L  G V+    +      +  N + +   E+  V  
Sbjct: 33  VFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNNRLVARGEVVVVED 92

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I  + 
Sbjct: 93  RLGVTMTEIIKTED 106


>gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826]
 gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826]
          Length = 105

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 28/75 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   ++V+    +     ++ +++  + G VI           L  N +     E+   
Sbjct: 20  DELMDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVY 79

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 80  EKNLAIRINEILDSK 94


>gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
           2060]
 gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
           2060]
          Length = 116

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            + + + V +   +   +  + D++ L  G V+    +      +  N + +   E+  V
Sbjct: 41  EQVFDVPVVVSAVLGASRMPIGDLLRLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLV 100

Query: 293 GKNYTIRITDRINFD 307
            +   + +T+ +  D
Sbjct: 101 EERLGVTMTEIVKSD 115


>gi|329888111|ref|ZP_08266709.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
 gi|328846667|gb|EGF96229.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
          Length = 110

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + VNI   +     ++  ++ L  G V+    +      +  N + +   E+  V  
Sbjct: 34  VFDVPVNISAVLGKANMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLVARGEVVVVED 93

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I  + 
Sbjct: 94  RLGVTMTEIIKTED 107


>gi|299131951|ref|ZP_07025146.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
 gi|298592088|gb|EFI52288.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
          Length = 119

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 33/102 (32%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                    +    E +    I       + + V +   +   K  + D++ L  G V+ 
Sbjct: 17  ETEAPPLDQAAYSEEEERSARIASDLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPGTVLE 76

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              R      +  N + +   E+  V     + +T+ I  ++
Sbjct: 77  LDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER 118


>gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
 gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
          Length = 118

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V+  + +     ++K ++ L++G VI           L  N +     E+   
Sbjct: 33  DELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVMVY 92

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 93  EKNLAIRINEILDSK 107


>gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
 gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
          Length = 116

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            + + + V +   +   +  + D++ L  G V+    +      +  N + +   E+  V
Sbjct: 41  EQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNNRLVARGEVVLV 100

Query: 293 GKNYTIRITDRINFD 307
            +   + +T+ +  D
Sbjct: 101 EERLGVTMTEIVKSD 115


>gi|255022967|ref|ZP_05294953.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208]
          Length = 503

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/274 (9%), Positives = 75/274 (27%), Gaps = 28/274 (10%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
             +  + ++  V +   + +         + +   + +         S+     S N  +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289

Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
            + + ++              L  +  ++L  + +   +  +++ + T  + SP  +E  
Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
              D + +              + +        + +  P        L       +    
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLTLGIQAKEVAEK 409

Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                                  + ++ +    +   ++ V ++      K  L+  ++ 
Sbjct: 410 EATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILEEIPVTLEVVFGTAKVKLEKFISW 469

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               VI          +L+ NG  I    L RV 
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVD 503


>gi|149916493|ref|ZP_01905010.1| hypothetical protein RAZWK3B_12402 [Roseobacter sp. AzwK-3b]
 gi|149809595|gb|EDM69451.1| hypothetical protein RAZWK3B_12402 [Roseobacter sp. AzwK-3b]
          Length = 342

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 58/209 (27%), Gaps = 14/209 (6%)

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI----ST 152
                  +  ++E     + +       RS++  +  +    +  I    ++ +      
Sbjct: 84  ARLDAQFLAAVIEVQTMGAVQRGDAPE-RSVTPTDAAMVAPLMDAILKGYDEYLTSGAEK 142

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
              S     D  +          +    +  I  ++       S  L++P+         
Sbjct: 143 VARSDWRFGDMVEDARTLALALEMPEYDLFRITADLADGAKTGSLSLLLPRA---PRRDP 199

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
             S+++++                   V +D  +      L  +  L  G  +P      
Sbjct: 200 VTSARDRAFAG-----PTLEASALNAPVMLDAVLARLSMPLNKLCALTPGMQLPVPREAL 254

Query: 273 TCAILS-ANGKEIYSCELGRVGKNYTIRI 300
             A L  A    +    LG++     +R+
Sbjct: 255 NKAELLGAGQHLVAPVRLGQLNGWRAVRL 283


>gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
 gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
          Length = 104

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 20  EDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 79

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 80  EKNLAIRINEILDSK 94


>gi|144233|gb|AAA23038.1| putative [Caulobacter crescentus CB15]
          Length = 101

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + VNI   +     ++  ++ L  G ++    +      +  N + +   E+  V +
Sbjct: 26  VFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 85

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I    
Sbjct: 86  RLGVTMTEIIKDGD 99


>gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
 gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
          Length = 104

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 20  EDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 79

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 80  EKNLAIRINEILDSK 94


>gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
 gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN
 gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
          Length = 112

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%)

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
              +    + V ++  +     TL +++ + IG VI      K    +  NGK I   EL
Sbjct: 34  ELIQHFSDIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGEL 93

Query: 290 GRVGKNYTIRITDRINFDQ 308
             +     ++I + +   +
Sbjct: 94  VIIDGKIGVKIKEVVKEQR 112


>gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 105

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 21  EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 80

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 81  EKNLAIRINEILDSK 95


>gi|32490801|ref|NP_871055.1| hypothetical protein WGLp052 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166007|dbj|BAC24198.1| fliN [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 135

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           L + S + K  + S+      +        + + +   +   K T++D++ LK   ++  
Sbjct: 28  LKANSEEIKEIDSSKIKNKKLSEDINLILDIPIKMTIELGRTKMTIRDLLLLKRDSIVTL 87

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                    +  N   +   E+  + + Y I+I D I  +++ 
Sbjct: 88  DGEIGEPLDILINDYLVARGEVVVMKERYGIKILDIITPEERI 130


>gi|118581838|ref|YP_903088.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
           2379]
 gi|118504548|gb|ABL01031.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
           2379]
          Length = 99

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 217 QNKSENQSEDLIDPFA-RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            +     +E  ID         + + +   +   K  +KD++ L  G V+          
Sbjct: 1   MSDKPESNETEIDRKNLDFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPL 60

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +  N K +   E   V + + +R+ D ++ +++ 
Sbjct: 61  DIFVNSKLVARGEAVVVNEKFGVRLVDIVSPNERV 95


>gi|209884355|ref|YP_002288212.1| flagellar motor switch phosphatase FliY [Oligotropha
           carboxidovorans OM5]
 gi|209872551|gb|ACI92347.1| flagellar motor switch phosphatase FliY [Oligotropha
           carboxidovorans OM5]
          Length = 119

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           +P    ++   +  ++    E +S  +        + + V +   +   K  + D++ L 
Sbjct: 12  LPDLNAIEAPPLDQAAYADDEERSARIASDL-EAVFDVPVQVSAVLGRSKMDVSDLLKLG 70

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            G V+    R      +  N + +   E+  V     + +T+ I  ++
Sbjct: 71  PGTVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER 118


>gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
 gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
          Length = 101

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            S        SE+           + V +  ++   + ++++V+ L  G ++    R   
Sbjct: 7   ASDSGSETKVSENDRKAL-DLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLAQRATD 65

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
              L  N K +   E+  V +N+ I+IT+ +   
Sbjct: 66  PVGLFVNDKLVAYGEVVVVEENFGIKITEIVGGQ 99


>gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
 gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
          Length = 104

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V     +   + T+ +V+ L+ G +I              NG+ +   E+    K
Sbjct: 21  ILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVESYVNGRILGKGEVMVYEK 80

Query: 295 NYTIRITDRINF 306
           N  IRI + ++ 
Sbjct: 81  NLAIRINEVLDS 92


>gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 462

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +   + T+K +V L+ G ++      +    L  NGK +   EL  +G 
Sbjct: 393 IDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGELLSIGD 452

Query: 295 NYTIRITDR 303
              +R+ + 
Sbjct: 453 ALGVRVLEI 461



 Score = 38.9 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 61/226 (26%), Gaps = 34/226 (15%)

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +   F E +V  +  +SS     +   S   ++ L+  LL        +  +        
Sbjct: 65  LFSDFGEPYVIREFRISSIEGPVWWVMSQQDLLFLMGFLLKNQTHPEFEADHD------- 117

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
                 +  +S  L     +        +    I      +    N     +   ++   
Sbjct: 118 -FLNAFVQFLSLELIHAFKSV-----EFDHSLSIQIKDPASQPEGNSLCVDVTAKVS--- 168

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL---NVNIDTRINLK 249
                    P+ ++    ++S     + +       +    +T       V +       
Sbjct: 169 ---------PEHSVKGRLILSDQFYKEWKAHYAQANENAMYQTPNADYLEVVVHLEAGKT 219

Query: 250 KTTLKDVVTLKIGQVIPFL----HREKT--CAILSANGKEIYSCEL 289
                +   L +G ++          +     +L+ NGK  +  +L
Sbjct: 220 TLKAGEWKKLALGDLLILDSCSLKPGEDAGRVLLTINGKPFFRGKL 265


>gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
 gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
          Length = 118

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V+  + +     ++K ++ L++G VI           L  N +     E+   
Sbjct: 33  DELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVMVY 92

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 93  EKNLAIRINEILDSK 107


>gi|86748400|ref|YP_484896.1| flagellar motor switch protein [Rhodopseudomonas palustris HaA2]
 gi|86571428|gb|ABD05985.1| Flagellar motor switch FliN [Rhodopseudomonas palustris HaA2]
          Length = 116

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 29/76 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V +   +   K  + +++ L  G V+    R      +  N + +   E+  V
Sbjct: 40  EAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLV 99

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  ++
Sbjct: 100 EDKLGVTMTEIIKAER 115


>gi|115522993|ref|YP_779904.1| flagellar motor switch protein [Rhodopseudomonas palustris BisA53]
 gi|115516940|gb|ABJ04924.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
          Length = 116

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 29/76 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V +   +   K  + +++ L  G V+    +      +  N + I   E+  V
Sbjct: 40  EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLIARGEVVLV 99

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  ++
Sbjct: 100 EDKLGVTMTEIIAAER 115


>gi|92116306|ref|YP_576035.1| flagellar motor switch protein [Nitrobacter hamburgensis X14]
 gi|91799200|gb|ABE61575.1| Flagellar motor switch FliN [Nitrobacter hamburgensis X14]
          Length = 116

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 28/76 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V +   +   K  +  ++ L  G V+    R      +  N + +   E+  V
Sbjct: 40  EAVFDVPVQVSAVLGRSKMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLV 99

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  ++
Sbjct: 100 EDKLGVTMTEIIKAEK 115


>gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           414]
          Length = 102

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 18  EDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 78  EKNLAIRINEILDSK 92


>gi|23015636|ref|ZP_00055406.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magnetotacticum MS-1]
          Length = 108

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 1/108 (0%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           +P   L                             Y + V +   +      +  ++ L 
Sbjct: 1   MPDFELNDFKPDGEEQGRGDVPDMPRSARDL-EAVYDIPVQVSAVLGKATMQVNQLLKLG 59

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            G V+    +      +  N + +   E+  V     + +T+ I  D+
Sbjct: 60  RGAVVELDRKVGEAIDIYVNNRLVARGEVVVVEDRLGVTMTEIIKTDR 107


>gi|295690737|ref|YP_003594430.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
 gi|295432640|gb|ADG11812.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
          Length = 110

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + VNI   +     ++  ++ L  G ++    +      +  N + +   E+  V +
Sbjct: 35  VFDVPVNISAVLGRAHMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I    
Sbjct: 95  RLGVTMTEIIKDGD 108


>gi|16125160|ref|NP_419724.1| flagellar motor switch protein [Caulobacter crescentus CB15]
 gi|221233890|ref|YP_002516326.1| flagellar motor switch protein [Caulobacter crescentus NA1000]
 gi|462113|sp|Q03593|FLIN_CAUCR RecName: Full=Flagellar motor switch protein FliN
 gi|144250|gb|AAA66328.1| flagellar switch protein [Caulobacter crescentus CB15]
 gi|13422174|gb|AAK22892.1| flagellar motor switch protein FliN [Caulobacter crescentus CB15]
 gi|220963062|gb|ACL94418.1| flagellar motor switch protein FliN [Caulobacter crescentus NA1000]
          Length = 110

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + VNI   +     ++  ++ L  G ++    +      +  N + +   E+  V +
Sbjct: 35  VFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I    
Sbjct: 95  RLGVTMTEIIKDGD 108


>gi|39934342|ref|NP_946618.1| flagellar motor switch protein [Rhodopseudomonas palustris CGA009]
 gi|192289870|ref|YP_001990475.1| flagellar motor switch protein [Rhodopseudomonas palustris TIE-1]
 gi|316935485|ref|YP_004110467.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           DX-1]
 gi|39648190|emb|CAE26710.1| putative flagellar motor switch protein [Rhodopseudomonas palustris
           CGA009]
 gi|192283619|gb|ACE99999.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           TIE-1]
 gi|315603199|gb|ADU45734.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           DX-1]
          Length = 115

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 28/75 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V +   +   K  + +++ L  G V+    R      +  N + +   E+  V
Sbjct: 40  EAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLV 99

Query: 293 GKNYTIRITDRINFD 307
                + +T+ I  D
Sbjct: 100 EDKLGVTMTEIIKAD 114


>gi|269967238|ref|ZP_06181302.1| type III secretion protein [Vibrio alginolyticus 40B]
 gi|269828094|gb|EEZ82364.1| type III secretion protein [Vibrio alginolyticus 40B]
          Length = 322

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K  N ++           QL V +   I  +  TL+ +  L+ G V            L
Sbjct: 229 EKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKLVTL 288

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            ANGK I  CEL  V ++  +R+ +     Q+
Sbjct: 289 RANGKIIGECELVNVNEHLGVRVVELFGGTQE 320



 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR--EKTCAILSANGKEIY 285
                 +   L V +   +     TL +  +L++G VI F      K  AI   + + ++
Sbjct: 159 SAALQARHLALPVWLS--LGRTHLTLSEFNSLELGDVIFFDDGYIAKQQAIFQVSNQNLW 216

Query: 286 SCEL 289
            C+L
Sbjct: 217 RCQL 220


>gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 124

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I  R+   + T++ ++ LK G V+           L  +G+     E+  + +
Sbjct: 43  LNNIKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINE 102

Query: 295 NYTIRITDRINFD 307
            Y +RIT   + D
Sbjct: 103 MYGVRITGYSDED 115


>gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 119

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 29/73 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V   + +   K  L +++  + G +I           +  NG+ I   E+    K
Sbjct: 33  LLDMEVVFRSELGSTKIPLSEILQFEKGSIIDLQKPAGESVEIFINGRIIGKGEVMVYEK 92

Query: 295 NYTIRITDRINFD 307
           N  IR+ + ++ +
Sbjct: 93  NLAIRVNEILDSN 105


>gi|288960027|ref|YP_003450367.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
 gi|288912335|dbj|BAI73823.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
          Length = 105

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 27/76 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              Y + V I   +      +  ++ L  G V+    +      +  N + +   E+  V
Sbjct: 29  EAVYDIPVQISAVLGKSTMQVAQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 88

Query: 293 GKNYTIRITDRINFDQ 308
                I +T+ I  D+
Sbjct: 89  EDRLGITMTEIIKSDR 104


>gi|56695927|ref|YP_166278.1| hypothetical protein SPO1026 [Ruegeria pomeroyi DSS-3]
 gi|56677664|gb|AAV94330.1| hypothetical protein SPO1026 [Ruegeria pomeroyi DSS-3]
          Length = 388

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/257 (8%), Positives = 72/257 (28%), Gaps = 17/257 (6%)

Query: 61  SYTSCQSGK--FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           S       +     +  +  E+ ++   S     +          V  +L+         
Sbjct: 51  SVIGATQARRELDELGRAVAEDRLYLMLSGPE-GALGAACMDRACVTAILQQQTMGQVVA 109

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN--LEDFYDIDYLKKNTNRL 176
              +  R+ +  +  +    I  +       +    +       E     +  +     L
Sbjct: 110 GGFVE-RAFTGTDAAMVAPLIDALLPRARDMVDQPLDRVCLTGYEFCARAESRRALLLLL 168

Query: 177 SNEFVTTINMNMTI--ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
             +     ++   I          LI+P            ++  +               
Sbjct: 169 EYDRYRVFDLTAEIAGGKAQGQITLILPDRPEAALEGAEGAAAPQGL--------HLDAA 220

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVG 293
              +  ++D  I+  +  L     ++ G ++P    +     I++  G+++    LG+  
Sbjct: 221 FGVVRADLDAVISRIRLPLAAFAGMQPGDLLPLVGLKLDRTEIVTIEGRQVALARLGQCR 280

Query: 294 KNYTIRITDRINFDQKS 310
               +R+ +++   ++ 
Sbjct: 281 GMRAVRLNEKLPDPERI 297


>gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
 gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
          Length = 84

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 32/74 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +  ++   +  +++V+ L  G V+           L  N + +   E+  V  
Sbjct: 9   VLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVVVED 68

Query: 295 NYTIRITDRINFDQ 308
           N+ I+IT+ +  ++
Sbjct: 69  NFGIKITELVGSEK 82


>gi|34498456|ref|NP_902671.1| hypothetical protein CV_3001 [Chromobacterium violaceum ATCC 12472]
 gi|34104311|gb|AAQ60670.1| hypothetical protein CV_3001 [Chromobacterium violaceum ATCC 12472]
          Length = 280

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 68/200 (34%), Gaps = 14/200 (7%)

Query: 99  CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
               L++ +L+   GA             +  E++L +    ++   L + I        
Sbjct: 88  FDRGLLLGILDYRFGARAGASDGELPAE-TETERRLGRTLAERLLPRLARAIH------- 139

Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
            L      D  +       ++    + ++++  +     + +          L +LS Q 
Sbjct: 140 QLSRASLPDASRPQPLGYPDQAAWQLEVDLSDGDAKLGTLRLRLNAAAFDALLQNLSGQR 199

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
                + D    FA +     + +D R+  ++  L  V+ L+ G V+P   +    A + 
Sbjct: 200 PRLLGNPD-SANFAERVR---IRLDARLLEQELPLGAVLDLRPGSVLPVAMQPH--AEVC 253

Query: 279 ANGKEIYSCELGRVGKNYTI 298
           A G  ++  ++        +
Sbjct: 254 AQGSPLFRAQVVERQGKLCL 273


>gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
          Length = 105

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +SL++  K      +       +   + V I   +   K  +   + +  G VIP    E
Sbjct: 5   VSLTAYGKGHAPDSNSDAHSMSQLGAVQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAAE 64

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                + AN   I   E+   G    + ITD
Sbjct: 65  HDEVWILANNHPIARGEIIIQGDRVAVSITD 95


>gi|319403949|emb|CBI77537.1| Flagellar motor switch protein fliY [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 170

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +      +  ++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 94  ELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVL 153

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I+ 
Sbjct: 154 EDDPSRFGVSLTEIIDK 170


>gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
 gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
          Length = 96

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              ++V +   +  K   L+DV+ L    VI           +  NGK I   E+   G 
Sbjct: 11  IQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGEVIAQGN 70

Query: 295 NYTIRITDRIN 305
            + IR+ + + 
Sbjct: 71  RFAIRVLEIVG 81


>gi|116328051|ref|YP_797771.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331496|ref|YP_801214.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120795|gb|ABJ78838.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125185|gb|ABJ76456.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 174

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
               L  +    + ++ +   +             +N+ +   +      +KDV  L  G
Sbjct: 68  ISAALGPSPTPSAPRSATRQSASTQSTNL-NLLMDVNLALTVELGRTNMFIKDVNGLNEG 126

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            V+           + ANG  +   +L  +   Y I+IT+ ++  ++ 
Sbjct: 127 IVVELDKNVGEDLDILANGHLVGRGKLVAMDDFYGIQITEIVDQSRRL 174


>gi|254228802|ref|ZP_04922225.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262396479|ref|YP_003288332.1| putative flagellar motor switch protein [Vibrio sp. Ex25]
 gi|151938749|gb|EDN57584.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262340073|gb|ACY53867.1| putative flagellar motor switch protein [Vibrio sp. Ex25]
          Length = 272

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 88/301 (29%), Gaps = 42/301 (13%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70
           P+  I L  +         I +    L       L    +  +    V+ S TS    +F
Sbjct: 8   PISDIQLLDVELLGKPIHIIREKLEGLISESCSSLTIELQNWLSTSKVEASLTSVDLHRF 67

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
           + I     +   +            F+   ++ +I L +   GAS E         L+  
Sbjct: 68  TPIKMDKDQTSTYQHQE----GGMVFVHGDSHTLIKLADRFYGASTERSATT----LTAS 119

Query: 131 EKKLAKRTIAQISAVLN--QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
           + +L +R    I   L   +                     +             + +N+
Sbjct: 120 DLRLQERISRIIIGWLAPGEMW-------------------EMGEYEAPRGIGINVQLNI 160

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
             ++   S  L +    +                   DL  PF R      V ++  ++ 
Sbjct: 161 AFDDHQGSIHLKLDSHLIQTLIEQL------ELQPDTDLYQPFCRSLETTPVRLNVVLSK 214

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           KK  L DVV L+   ++P          +S   + +++  +        +      N D+
Sbjct: 215 KKMPLSDVVGLQPNDILPIELL--NTVPVSIGNQSLFTGRIAEQDGQLVL----IFNPDK 268

Query: 309 K 309
           +
Sbjct: 269 E 269


>gi|144901008|emb|CAM77872.1| Surface presentation of antigens (SPOA) protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 90

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 26/78 (33%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
               Y +NV     +      +  ++ L  G V+    +      L  N K I   E+  
Sbjct: 13  QEAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARAEVVV 72

Query: 292 VGKNYTIRITDRINFDQK 309
           V  +  + +T+ +     
Sbjct: 73  VEDHLAVTVTEVLKRAAD 90


>gi|319898626|ref|YP_004158719.1| flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
 gi|319402590|emb|CBI76135.1| Flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
          Length = 171

 Score = 68.1 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + V +   +      +  ++ L  G VI    +      +  NG+ I   E+  
Sbjct: 94  KELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIV 153

Query: 292 VGK---NYTIRITDRINF 306
           +      + I +T+ I+ 
Sbjct: 154 LEDDPSRFGISLTEIIDK 171


>gi|288960009|ref|YP_003450349.1| flagellar motor switch protein [Azospirillum sp. B510]
 gi|288912317|dbj|BAI73805.1| flagellar motor switch protein [Azospirillum sp. B510]
          Length = 100

 Score = 68.1 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 29/88 (32%)

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
               +  D  +       V I   I      ++D++ L  G V+      K    +   G
Sbjct: 10  ASDPNDGDASSFAIGDAPVEIKVVIGTAMLRVRDLLKLGRGAVVELDRHLKDPTDVYVEG 69

Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQK 309
             +   E+  +     + +TD I   ++
Sbjct: 70  VLVARGEVAIIDDKIGVTLTDFIKSSRE 97


>gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 127

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +  K   L +++ LK G V+     E     +  NG    + E+     
Sbjct: 53  LKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIVSKNG 112

Query: 295 NYTIRITDRINF 306
            Y +R+   I  
Sbjct: 113 QYGVRLLSIIKK 124


>gi|83309599|ref|YP_419863.1| flagellar motor switch protein [Magnetospirillum magneticum AMB-1]
 gi|82944440|dbj|BAE49304.1| Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magneticum AMB-1]
          Length = 108

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 1/108 (0%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           +P   L                             Y + V +   +      +  ++ L 
Sbjct: 1   MPDFELNDFKPEVEEQGRGDVPDMPRSARDL-EAVYDIPVQVSAVLGKATMQVNQLLKLG 59

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            G V+    +      +  N + +   E+  V     + +T+ I  D+
Sbjct: 60  RGAVVELDRKVGEAIDIYVNNRLVARGEVVVVEDRLGVTMTEIIKTDR 107


>gi|126176170|ref|YP_001052319.1| hypothetical protein Sbal_3982 [Shewanella baltica OS155]
 gi|125999375|gb|ABN63450.1| conserved hypothetical protein [Shewanella baltica OS155]
          Length = 293

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 21/291 (7%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
           R    + +K    ++   L     + L       +   +   + +      +        
Sbjct: 19  RPIMLVQEKLARTRLLQQL-EQLHRPLIDAINNILSPLLRQGHPAVSGSTLTEPRTPVVP 77

Query: 80  NFVFSQASLSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
              ++   L    +   +       +  L  N  G +   +     R+ S  E +LAK+ 
Sbjct: 78  EHCYAWFVLKHQQNTLGYWRIDRCTLDQLASNYYGNTSTPLSSPL-RNPSQSEFRLAKKL 136

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
           +  +   L           PN     +   ++     +        + N    ++    +
Sbjct: 137 LLSVVDEL-----------PNSTIDTNTLEVELIKGHMPLTVSAVWSFNFINGSLTPPML 185

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
             +      +  L  L+ Q K    S DL    A     L + +   +      ++ +  
Sbjct: 186 FCLT-----EHLLGHLAEQPKKSEISADLPTKLAVWLKSLPIKMQLTLGQHSIPVQSLSQ 240

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           LK G ++P     KT   +      ++   +         ++T  +  +++
Sbjct: 241 LKTGDILPINLYPKTLLSI--GNTTLFHASVHSHEGQMVAKLTQDVYQNEE 289


>gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
 gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
          Length = 98

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 31/75 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                ++V+  + +     ++++++ L++G VI           L  N +     E+   
Sbjct: 13  EDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEVMVY 72

Query: 293 GKNYTIRITDRINFD 307
            KN  IRI + ++  
Sbjct: 73  EKNLAIRINEILDSK 87


>gi|150388449|ref|YP_001318498.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
           QYMF]
 gi|149948311|gb|ABR46839.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
           QYMF]
          Length = 143

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 45/131 (34%), Gaps = 1/131 (0%)

Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
                 E    +  +  I +       + P     K ++  +  Q   +  S+ + +  +
Sbjct: 4   DMISQEEIDALLKGSTNISSDNDRIDEVQPSTKQSKVSVQPIQFQAFEQVSSKGVPENIS 63

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +      + +V+    G +I           +  NG+ +   E+  +
Sbjct: 64  T-IQDVPLSVTVELGRTVKKISEVLEFGPGTIIEVEKLVGEHVDILVNGQYVAKGEVVVI 122

Query: 293 GKNYTIRITDR 303
            +NY  RIT+ 
Sbjct: 123 DENYGTRITEI 133


>gi|85713558|ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gi|85699462|gb|EAQ37329.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 116

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 28/76 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V +   +   +  +  ++ L  G V+    R      +  N + +   E+  V
Sbjct: 40  EAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLV 99

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  ++
Sbjct: 100 EDKLGVTMTEIIKAEK 115


>gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
           L-1]
 gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
           L-1]
          Length = 112

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R    + V +   +      L +V+ L  G V+    +      +  NG  I   E+  V
Sbjct: 28  RLLADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEVVTV 87

Query: 293 GKNYTIRITDRINFDQKS 310
              Y IRI +    + + 
Sbjct: 88  NGRYGIRIVEIAAAESRL 105


>gi|319406966|emb|CBI80603.1| Flagellar motor switch protein fliY [Bartonella sp. 1-1C]
          Length = 170

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +      +  ++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 94  ELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVL 153

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I+ 
Sbjct: 154 EDDPSRFGVSLTEIIDK 170


>gi|167644980|ref|YP_001682643.1| flagellar motor switch protein [Caulobacter sp. K31]
 gi|167347410|gb|ABZ70145.1| flagellar motor switch protein FliN [Caulobacter sp. K31]
          Length = 111

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + VNI   +     ++  ++ L  G ++    +      +  N + +   E+  V +
Sbjct: 35  VFDVPVNISAVLGRAHMSVAQLLQLSAGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I    
Sbjct: 95  RLGVTMTEIIKDGD 108


>gi|114797692|ref|YP_760111.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
           15444]
 gi|114737866|gb|ABI75991.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
           15444]
          Length = 89

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 7/80 (8%), Positives = 32/80 (40%)

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
              +    + V +D  +   +  +++++ L  G+++    +      +  +G+ +   +L
Sbjct: 8   ALEKMLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLVARGKL 67

Query: 290 GRVGKNYTIRITDRINFDQK 309
                   + +++ I+   +
Sbjct: 68  VVTDGQLGVTLSEIIDSRPE 87


>gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 95

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +  ++  +ID  +  K   +++++  + G ++ F            NGK +   E+  
Sbjct: 8   KNEFGEVLFDIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMV 67

Query: 292 VGKNYTIRITDRINFDQ 308
           + + + +RIT+ +  + 
Sbjct: 68  LDERFAVRITEILEKED 84


>gi|75674794|ref|YP_317215.1| flagellar motor switch protein [Nitrobacter winogradskyi Nb-255]
 gi|74419664|gb|ABA03863.1| surface presentation of antigens (SPOA) protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 116

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 28/76 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V +   +   +  +  ++ L  G V+    R      +  N + +   E+  V
Sbjct: 40  EAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLV 99

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  ++
Sbjct: 100 EDKLGVTMTEIIKAEK 115


>gi|312883879|ref|ZP_07743596.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368337|gb|EFP95872.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 321

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++        +       QL V +   +  +  TL+ + +L+ G          +   + 
Sbjct: 230 ETNMNDITNNEALTDH-QQLPVELTFDVGQQTITLEQLNSLQPGFTFELNQPISSPVTMR 288

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           ANGK I  CEL  + +   +R+ + +   Q+
Sbjct: 289 ANGKIIGECELVNINERLGVRVIELLGETQE 319


>gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
 gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
          Length = 107

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 29/78 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R    + + +   +      L +++ L  G V+    +      +  NG  +   E+  V
Sbjct: 23  RLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAKGEVVTV 82

Query: 293 GKNYTIRITDRINFDQKS 310
              + IR+ D +  D + 
Sbjct: 83  NGKFGIRVVDIVAADARL 100


>gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179]
 gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC
           49179]
          Length = 139

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + V     +      L +V+  + G VI              NG+ I   E+   
Sbjct: 55  KGLLDMEVTFMAELGSTSIPLGEVLRFERGSVIDLQKPAGESVDTFVNGRVIGKGEVMVY 114

Query: 293 GKNYTIRITDRINFD 307
            KN  IR+ + ++ +
Sbjct: 115 EKNLAIRLNEVLDSN 129


>gi|197104325|ref|YP_002129702.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
           HLK1]
 gi|196477745|gb|ACG77273.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
           HLK1]
          Length = 111

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + V+I   +     ++  ++ L  G V+    +      +  N + +   E+  V +
Sbjct: 35  VFDVPVSISAVLGRSTLSVAQLLQLAQGSVLELDRKVGEAIDIYVNNRLVARGEVVIVDE 94

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I    
Sbjct: 95  RLGVTMTEIIKDGD 108


>gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 178

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                +N+ +   +      +KDV  L  G V+           + ANG+ +   +L  +
Sbjct: 101 NLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAM 160

Query: 293 GKNYTIRITDRINFDQKS 310
              Y I+IT+ ++  ++ 
Sbjct: 161 DDFYGIQITEIVDQSRRL 178


>gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
 gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
          Length = 318

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 90/303 (29%), Gaps = 48/303 (15%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L  +        V            +  +  F    + ++ +                ++
Sbjct: 24  LASLLGRNARAAVT-ELGETDRETLTEYLPHF-NVVIEAERTAEGLRVPQLYVFDRADML 81

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEK-------KLAKRTIAQISAVLNQCISTTQESSP 158
            +   ++G    T   L   +LST+++          +     +   + + ++       
Sbjct: 82  KISNFIMGLPVNTESPLDEIALSTLKEVASQCMGAAMENLGDFLGREMGEVLTRVTAFDS 141

Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
                  I    K  +         I  ++ IE V S+ VL I  E L +   I +  Q 
Sbjct: 142 AERILDTISLWDKVPHL------LLIRFHLEIEGVLSAEVLGIATEELQEIFGIPVMGQE 195

Query: 219 KSENQSEDLID---------------------------------PFARKTYQLNVNIDTR 245
            +  ++    +                                    +K   + +++  R
Sbjct: 196 PAAEEAVHTEELPFRKKEKTVAFREVSFPEFKYVPLDNQVDHIGEERKKLRDITLDVSVR 255

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I     ++KD++ L+ GQ++    +  + A +  NGK I   ++      +  RI + I 
Sbjct: 256 IGGTVCSVKDILALQKGQILTLDKQAGSPADVVVNGKLIGKSDVLVTDDKFAARIIEIIG 315

Query: 306 FDQ 308
              
Sbjct: 316 KRD 318


>gi|163784306|ref|ZP_02179216.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880424|gb|EDP74018.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 193

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 34/99 (34%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +            E++ D        + + I   +  +   L+D++ L    V+      
Sbjct: 87  LQEQKTQGETPVFEEVKDEKLELLMDIPLEISVEVGGRDILLEDILKLNPNTVLELDKYI 146

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  NGK +   EL     N+ ++IT  +   ++ 
Sbjct: 147 NEPVDIKINGKLVAKGELYTAENNFGVKITSIVTVQERM 185


>gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
           98-5491]
 gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
           98-5491]
          Length = 119

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 3/100 (3%)

Query: 211 LISLSSQNKSENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                 Q   +      ++           + V     +   K  L +++  + G +I  
Sbjct: 6   FTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVAFHAELGSAKIPLLEILRFEKGSIIDL 65

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                    +  NG+ +   E+    KN  IR+ + ++ +
Sbjct: 66  QKPAGESVEIYINGRIVGKGEVMVYEKNLAIRVNEILDSN 105


>gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein
           [uncultured bacterium]
          Length = 117

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
               Y++ V +   +      +  ++ L  G V+           ++AN + I   E+  
Sbjct: 40  MEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIARGEVVV 99

Query: 292 VGKNYTIRITDRINFD 307
           V     I+ITD I  +
Sbjct: 100 VEDRLAIQITDIIRSN 115


>gi|255030382|ref|ZP_05302333.1| flagellar motor switch protein FliM [Listeria monocytogenes LO28]
          Length = 199

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 45/155 (29%), Gaps = 6/155 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      +I + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           L     +    SP + +               N+ 
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDM 199


>gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
           1]
 gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
           1]
          Length = 141

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + + +   +   +  + DVV+L  G ++ F         ++ NGK I   E+  V
Sbjct: 60  ERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIARGEVVVV 119

Query: 293 GKNYTIRITDRINFDQKS 310
           G+++ +RI+  I   Q+ 
Sbjct: 120 GEHFGVRISQIITPQQRI 137


>gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 293

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 91/285 (31%), Gaps = 24/285 (8%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ--ASLSSWSSNF 95
           +       L       ++  +    T C++ + +          V         + SS +
Sbjct: 1   MASDLSNILRDELSNTLEQLLS-QPTKCENVEKADFSKVDSSQCVEIDVKFEFKNISSTW 59

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL-NQCISTTQ 154
                 +        +LG + +    + +     + + +       IS  +  Q      
Sbjct: 60  NFFIPTSSAARFEYLMLGGTGDLKEHIDDEITDAINE-IVSNICGSISTSVNAQGFPDIS 118

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV-LIIPQETLLKTTLIS 213
                +     I+   K  N   N F   +N++  I  V  SF  +I+P  + +      
Sbjct: 119 GLKHEILGSKIIECNGKENN--DNTFSFKLNLDNKISEVIISFDDVILPFLSEITGKEAD 176

Query: 214 LSSQNKSENQ---------------SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
            +S N+S +Q               S++         + + + +  R+  K   LKD++ 
Sbjct: 177 AASNNESSSQGFPSLPTSNGIDSLLSDESSKNLK-LLFDIKLKLSVRLGTKLFLLKDILK 235

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             IG++I           +  NG +I   E   V   + ++I + 
Sbjct: 236 WDIGEIIELEQMVNEPLDILVNGIKIGEGEAVIVEGKFGLKIKNI 280


>gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum
           JL354]
          Length = 118

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +++V +   +  K   L++++ L    ++           +  NG+ I   E+   G 
Sbjct: 11  IQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEVVAQGN 70

Query: 295 NYTIRITD 302
            + IRI +
Sbjct: 71  RFAIRILE 78


>gi|319405390|emb|CBI79009.1| Flagellar motor switch protein fliY [Bartonella sp. AR 15-3]
          Length = 170

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +      +  ++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 94  ELIMSIPVEVQVVLGSTTMPVSTLMDLGRGAVITLDKQIGDPIDIVVNGRVIARGEVIVL 153

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I+ 
Sbjct: 154 EDDPSRFGVSLTEIIDK 170


>gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
           UT26S]
 gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
           UT26S]
          Length = 112

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R    + V +   +      L +V+ L  G V+    +      +  NG  I   E+  V
Sbjct: 28  RLLADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEVVTV 87

Query: 293 GKNYTIRITDRINFDQKS 310
              Y IRI +    + + 
Sbjct: 88  NGRYGIRIVEIAAAESRL 105


>gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740]
 gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
          Length = 117

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V     +   K TL +++  + G +I              NG+ I   E+    K
Sbjct: 34  LLDMEVIFTAELGATKITLAEILKFEKGSIIDLQKPAGESVETFVNGRIIGKGEVMVYEK 93

Query: 295 NYTIRITDRINFD 307
           N  IRI + ++ +
Sbjct: 94  NLAIRINEILDSN 106


>gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36]
 gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36]
          Length = 122

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 31/70 (44%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           + + +++   +   K  + D++ L  G VI           L  NG+ + + E+  V   
Sbjct: 45  HNIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLATAEVVVVNGK 104

Query: 296 YTIRITDRIN 305
           Y +++ D ++
Sbjct: 105 YGVKLIDVVD 114


>gi|114777575|ref|ZP_01452556.1| flagellar protein [Mariprofundus ferrooxydans PV-1]
 gi|114552046|gb|EAU54563.1| flagellar protein [Mariprofundus ferrooxydans PV-1]
          Length = 98

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            + +   +E            + + I   +   K  L  +  L  G VI           
Sbjct: 1   MSDTATATEHPQTANLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQ 60

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + ANG      E+   G    +RIT+ +    + 
Sbjct: 61  ILANGSIFAKGEVVSTGDKLGVRITEIVPASARI 94


>gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
 gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
          Length = 102

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 32/73 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   + V +   +   +  LKDV+ +  G V+P          ++ANG+ +   E+   
Sbjct: 9   KRFGDVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIAQ 68

Query: 293 GKNYTIRITDRIN 305
              + +RI + + 
Sbjct: 69  DGRFALRIVELVG 81


>gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula
           marina DSM 3645]
 gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula
           marina DSM 3645]
          Length = 309

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 98/312 (31%), Gaps = 54/312 (17%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGK---FSHIIHSFKENFVFSQASLSSWSSN-- 94
             +++     F  K+  +V     +C+ GK      +  +       +     ++S+   
Sbjct: 3   EQFRRMAD--FTAKLKDEV---LAACEVGKDEASEALSRALGNPMTLAVGEAGAYSAAVA 57

Query: 95  -------FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                    +       I L+    G   +   +      S          +A ++  L 
Sbjct: 58  PEEAGLAIVLKVDLEAAIVLIPASSGLLPDWYAEPDATGESK---------LATLAQELG 108

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
             +   +    + +     +           +    +++ +T EN +S  +L+ P     
Sbjct: 109 MLLLPEEFMPLDFKAGKIENIRAGLKKAGCTDAAACVSLPLTGENGSSEALLVWPAPQAD 168

Query: 208 KTTLISLSSQNKSENQS----------------------------EDLIDPFARKTYQLN 239
                + + Q  ++                               +  +  +A+   ++ 
Sbjct: 169 AIFKSTAAPQQPTDTPKNDPNLAVEVKPAPAPTPATPPPRTEPVGQRNLPHYAKSLLKIA 228

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + ++  +  KK  ++++  L IG +I F    +    L      I   E  ++G  + +R
Sbjct: 229 IEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGDKFGMR 288

Query: 300 ITDRINFDQKSL 311
           +T+ +  +++ +
Sbjct: 289 VTNVLLPEERFI 300


>gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 178

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                +N+ +   +      +KDV  L  G V+           + ANG+ +   +L  +
Sbjct: 101 NLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAM 160

Query: 293 GKNYTIRITDRINFDQKS 310
              Y I+IT+ ++  ++ 
Sbjct: 161 DDFYGIQITEIVDQSRRL 178


>gi|238762374|ref|ZP_04623345.1| Flagellar motor switch protein [Yersinia kristensenii ATCC 33638]
 gi|238699359|gb|EEP92105.1| Flagellar motor switch protein [Yersinia kristensenii ATCC 33638]
          Length = 291

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 71/206 (34%), Gaps = 16/206 (7%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHE--TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            N        L++ +L +  G + E  T+  L N   +  E++L  +   +I+ ++    
Sbjct: 85  GNIAFDIDRTLLLNILNDYYGLTKEKSTVSVLDNTPKTQTEERLKNKLSIEIADLILN-- 142

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                  P   +   I             +   ++  +        F L+I    + +  
Sbjct: 143 ------QPVFGEPLVIKNNNSTPIVS---WSYQMDFLLKDYENVG-FTLLIDTPNVDRLL 192

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
               +   + +      +  F +   QL + + ++++    TL D++ +K G +IP    
Sbjct: 193 NTLHTGIKEEKKTQTLSVTQFNQLVSQLPIQLTSQLSCSDLTLFDLMAIKEGDIIPTSLP 252

Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296
           E+    +    + ++S  +       
Sbjct: 253 ERFP--VFIGKQPLFSAVVTESRGKL 276


>gi|56384263|gb|AAV85781.1| FliN [Azospirillum brasilense]
          Length = 109

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 27/76 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              Y + V I   +      +  ++ L  G V+    +      +  N + +   E+  V
Sbjct: 33  EAVYDIPVQISAVLGKSTMQVSQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 92

Query: 293 GKNYTIRITDRINFDQ 308
                I +T+ I  D+
Sbjct: 93  EDRLGITMTEIIKSDR 108


>gi|269960159|ref|ZP_06174535.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835130|gb|EEZ89213.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 272

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 50/305 (16%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70
           P+  I L  +         I +   SL       L    +  +  + ++ +  + +  +F
Sbjct: 8   PISDIKLLDVELLGKPIHIIREKLESLISESCSSLTNELQNWLSSNKIEANLVAVELHRF 67

Query: 71  SHIIHSFKENFVF----SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
           S          +     +           +I      +I L +   GA+ E         
Sbjct: 68  S--------PTLLDKDQTSTYQHQDGGMVYIHGDAQALIKLADRFYGAATERTSTS---- 115

Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           L+  + +L +R    I   L   +                     +              
Sbjct: 116 LTASDLRLQERISRIIINWLAPQEMW-------------------QPCEYETPRGIGLHA 156

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            +++  E+   +  L +    +             + +   DL  PF R      V ++ 
Sbjct: 157 ELSIAFEDFQGAIHLKLDSTMIQTLIEQL------ALHNDADLYQPFCRSLESTPVRLNV 210

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            ++ K   L DVV L+   ++P          +S   + ++S  +        +      
Sbjct: 211 VLSKKTMALSDVVGLQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IF 264

Query: 305 NFDQK 309
           N D++
Sbjct: 265 NPDKE 269


>gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 172

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 31/74 (41%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + + +   +      +KDV+ L  G V+           + ANGK +   +L  +   Y
Sbjct: 93  DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDDYY 152

Query: 297 TIRITDRINFDQKS 310
            ++IT  ++  ++ 
Sbjct: 153 GVQITQIVDPMERL 166


>gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 121

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 32/78 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ V +   +   + +L +++    G VI           +  NG  +   E+  + + 
Sbjct: 44  KKIPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINEK 103

Query: 296 YTIRITDRINFDQKSLKN 313
           Y +R+ D ++    ++ N
Sbjct: 104 YGLRLIDVVDSPLNTMDN 121


>gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
 gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
          Length = 111

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                +++ +   +     TL +++ L  G VI           + ANG  I   E+  V
Sbjct: 27  DLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAATDLLDIYANGTLIAKGEIVSV 86

Query: 293 GKNYTIRITDRINF 306
              Y I++ + +  
Sbjct: 87  DGRYGIQVAEVVAP 100


>gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
           43160]
 gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
           43160]
          Length = 249

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 33/72 (45%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   I   + T+ ++++L  G+V+         A L  NG  I   E+  V
Sbjct: 165 DLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVVVV 224

Query: 293 GKNYTIRITDRI 304
            +++ +RI++ +
Sbjct: 225 DEDFGLRISEIV 236


>gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 109

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
           L+  +     ++DL +       ++ V +   +      + +++ L  G VIP  HR   
Sbjct: 9   LNMDHGETTTAKDLNNRNLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVIPLDHRVGE 68

Query: 274 CAILSANGKEIYSCELGRV---GKNYTIRITDRINF 306
              +  NG+ I   E+  V      + + +T+ +  
Sbjct: 69  PVDIVVNGRVIARGEVVVVEDDNSRFGVSLTEIVGP 104


>gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
          Length = 112

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 32/78 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +  ++ T+K+++ L  G V+ F         L  NG  +   E+   
Sbjct: 30  DLLMDVPVYLTVEVGRRRMTIKELLALASGSVVTFDRSVTEPMDLMVNGTLVARGEVVSA 89

Query: 293 GKNYTIRITDRINFDQKS 310
              + +R+ D ++  ++ 
Sbjct: 90  EGQFGLRLVDVVSPKERL 107


>gi|226225726|ref|YP_002759832.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
 gi|226088917|dbj|BAH37362.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
          Length = 141

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 28/70 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L + +   +     T+++++ L  G VI           +    +     E+  +G+
Sbjct: 60  LLDLTLPVSIELGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVVLGE 119

Query: 295 NYTIRITDRI 304
           ++ +RIT  +
Sbjct: 120 HFGVRITRVL 129


>gi|260767962|ref|ZP_05876896.1| putative flagellar motor switch protein [Vibrio furnissii CIP
           102972]
 gi|260615992|gb|EEX41177.1| putative flagellar motor switch protein [Vibrio furnissii CIP
           102972]
          Length = 256

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 76/221 (34%), Gaps = 33/221 (14%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
               F+   ++++ITL +   GA+      +    L++ +++L +R    ++        
Sbjct: 69  GGALFVRLDSHMLITLADRFYGANMARSQSV----LTSSDRRLQERIGKVVAH-----WV 119

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
             QE              + +   + N       +++   +      LI+  + +     
Sbjct: 120 APQEMW------------QLHEGDIGNGIGLKAELSVRYADQHGVLTLIMESQLVQTLID 167

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                       + +L   F R      V ++  ++ K   L DV+ L    ++P     
Sbjct: 168 QL------DLQPNTELNAQFRRSLQHTPVRLNVLLSKKTMPLSDVLRLTPNDILPIDLL- 220

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            +   +S   + ++S  +        +     +N D++SL+
Sbjct: 221 -STVPVSIGHERLFSGRIAEQEGQLVL----ILNQDKESLR 256


>gi|121602197|ref|YP_989410.1| flagellar motor switch protein fliY [Bartonella bacilliformis
           KC583]
 gi|120614374|gb|ABM44975.1| flagellar motor switch protein fliY [Bartonella bacilliformis
           KC583]
          Length = 139

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +    ++ +           + V +   +      + +++ L  G VI    +      +
Sbjct: 48  SSKTQENTNDASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDI 107

Query: 278 SANGKEIYSCELGRVGK---NYTIRITDRINF 306
             NG+ I   E+  +      + + +T+ I+ 
Sbjct: 108 VVNGRIIARGEVIVLEDDSSRFGVSLTEVIDK 139


>gi|269105050|ref|ZP_06157745.1| type III secretion inner membrane protein YscQ [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160685|gb|EEZ39183.1| type III secretion inner membrane protein YscQ [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 321

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q K  N ++           QL + +   +  +  TL+ +  L+ G              
Sbjct: 227 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISDPVT 286

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           + ANGK I  CEL  + +   +R+ +     Q+
Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQE 319


>gi|227873537|ref|ZP_03991782.1| possible flagellar motor switch protein FliY [Oribacterium sinus
           F0268]
 gi|227840627|gb|EEJ51012.1| possible flagellar motor switch protein FliY [Oribacterium sinus
           F0268]
          Length = 472

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 18/121 (14%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF------------------ARKTYQLNVNIDTRI 246
            L     I      ++++    LI P                        ++ + I   I
Sbjct: 346 MLELIRDIQGGKNKEAKSSEPSLIKPLNSREFENEGGGAGENPDNREMLMKVPLEISVEI 405

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              +  +KD++    G ++         A L  NG+ I   ++  V +N+ IRIT+ +  
Sbjct: 406 GRTRKLVKDILDFTQGSLVVLDKMAGEQADLYVNGECIAKGDIVVVEENFGIRITEILKK 465

Query: 307 D 307
           D
Sbjct: 466 D 466


>gi|95929862|ref|ZP_01312603.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684]
 gi|95134158|gb|EAT15816.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684]
          Length = 107

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +T      + + +E+  EDL +        + +++   +   K  +++++ +  G VI
Sbjct: 1   MEETEATPAPAPDAAESHDEDLKNL--ELLLDIPLDVSVEVGRTKILVRELLQMDEGYVI 58

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                      +  N + I   E+  V     +R+TD I+  ++ 
Sbjct: 59  ELGKNANEPLDVYVNSRLIARGEVVLVDDKLGLRLTDVISPAERI 103


>gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
 gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
          Length = 112

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 29/76 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V I   +   K  + D++ L  G V+    +      +  N + +   E+  V
Sbjct: 37  EAVFDVPVRISAVLGSSKMHVSDLLKLASGTVLELDRKVGEAIDIYVNDRLVARGEVVLV 96

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  D+
Sbjct: 97  EDKLGVTMTEIIKTDR 112


>gi|153831629|ref|ZP_01984296.1| putative flagellar motor switch protein [Vibrio harveyi HY01]
 gi|148872139|gb|EDL70956.1| putative flagellar motor switch protein [Vibrio harveyi HY01]
          Length = 272

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 50/305 (16%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70
           P+  I L  +         I +   SL       L    +  +  + ++ +  + +  +F
Sbjct: 8   PISDIKLLDVELLGKPIHIIREKLESLISESCSGLTNELQNWLSTNKIEANLVAVELHRF 67

Query: 71  SHIIHSFKENFVF----SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
           S          +     +           +I      +I L +   GA+ E         
Sbjct: 68  S--------PTLLDKDQTSTYQHQDGGMVYIHGDAQALIKLADRFYGAATERTSTS---- 115

Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           L+  + +L +R    I   L   +                     +              
Sbjct: 116 LTASDLRLQERISRIIINWLAPQEMW-------------------QTCEYETPRGIGLHA 156

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            +++  E+   +  L +    +             + +   DL  PF R      V ++ 
Sbjct: 157 ELSIAFEDFQGAIHLKLDSTMIQTLIEQL------ALHNDTDLYQPFCRSLESTPVRLNV 210

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            ++ K   L DVV L+   ++P          +S   + ++S  +        +      
Sbjct: 211 VLSKKTMALSDVVRLQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IF 264

Query: 305 NFDQK 309
           N D++
Sbjct: 265 NPDKE 269


>gi|269967104|ref|ZP_06181171.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828241|gb|EEZ82508.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 218

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 37/251 (14%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           + S TS    +F+ +    ++   +            FI  + + +I L +   GAS E 
Sbjct: 2   EASLTSVDLHRFTSVEMDKEQTSTYQHQE----GGMVFIHGNPHTLIKLADRFYGASAER 57

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
                   L+  + +L +R    I            E     E                 
Sbjct: 58  SAAT----LTASDLRLQERISRIIIG-----WLAPGEMWDTGEYE------------TPR 96

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                + +N+  ++   S  L +    +                   DL  PF R     
Sbjct: 97  GIGINVQLNIAFDDHQGSIHLKLDGHLIQTLIEQL------ELQPDTDLFQPFCRSLETT 150

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V ++  ++ KK  L DVV L+   ++P          +S   + +++  +        +
Sbjct: 151 PVRLNVVLSKKKMPLSDVVGLQPNDILPIELL--NTVPVSIGNQSLFTGRIAEQDGQLVL 208

Query: 299 RITDRINFDQK 309
                 N D++
Sbjct: 209 ----IFNPDKE 215


>gi|114798836|ref|YP_758975.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
           ATCC 15444]
 gi|114739010|gb|ABI77135.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
           ATCC 15444]
          Length = 99

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +  + +     + + R  Y + V +   I  K+ ++++++ L+   VI    +      L
Sbjct: 5   DGQDRRDPSGRNSYRRSIYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDL 64

Query: 278 SANGKEIYSCELGRV-GKNYTIRITDRINFDQK 309
             + K I   EL         ++I + I    +
Sbjct: 65  FIDDKLIAKGELVETDDGQIAVKIVEIIEKAIE 97


>gi|162147463|ref|YP_001601924.1| flagellar motor switch protein fliN [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545572|ref|YP_002277801.1| flagellar motor switch protein FliN [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786040|emb|CAP55622.1| putative flagellar motor switch protein fliN [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533249|gb|ACI53186.1| flagellar motor switch protein FliN [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 125

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
               Y + V I   I      +  ++ L  G V+    +      + AN + I   E+  
Sbjct: 45  MEAVYDIPVKITAVIGSATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVV 104

Query: 292 VGKN-YTIRITDRINF 306
           V  N   + +T+ I+ 
Sbjct: 105 VDDNHIGVTMTEIISS 120


>gi|268043519|gb|ACY92085.1| flagellar motor switch protein [Allochromatium vinosum DSM 180]
          Length = 120

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 6/92 (6%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
                 P       R+                +   + ++L       +    +IS    
Sbjct: 34  TDGQARPYDFATQDRIVRG------RMPTLDMINERFARYLRVHLFNLLRRSSEISVIGA 87

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +  KFS   HS       +   +         
Sbjct: 88  RVTKFSEYRHSLYVPTSLNLVRVYPLHGIGVA 119


>gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
 gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
          Length = 119

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 32/83 (38%)

Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
              +    ++ V +   +     +L D+V +  G V+           +  NG  I   E
Sbjct: 35  RDMSHFLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAE 94

Query: 289 LGRVGKNYTIRITDRINFDQKSL 311
           +   G NY +R+ +  + D  +L
Sbjct: 95  VVVAGDNYGLRVVELNDLDLDTL 117


>gi|319409197|emb|CBI82841.1| Flagellar motor switch protein fliY [Bartonella schoenbuchensis R1]
          Length = 165

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +      + +++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 89  ELIMSIPVEVQIVLGSTTMPVANLMDLGRGSVITLDKQIGDPIDIIVNGRIIARGEVIVL 148

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ +  
Sbjct: 149 EDDPSRFGVSLTEVMGK 165


>gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
 gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
          Length = 118

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +QL V++   +   + +L ++  +  G V+           +  NG  +   E+  V   
Sbjct: 41  HQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 100

Query: 296 YTIRITDR 303
           Y +R+ + 
Sbjct: 101 YGVRLLEV 108


>gi|254470176|ref|ZP_05083580.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
 gi|211960487|gb|EEA95683.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
          Length = 111

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 29/76 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + V +   +   K  + D++ L  G V+    +      +  N + I   E+  V
Sbjct: 36  EAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVNNRLIARGEVVLV 95

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  D+
Sbjct: 96  EDKLGVTMTEIIKADK 111


>gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
 gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
          Length = 123

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ VN+   +   + TLK+++ +  G VI           +  NG      E+  +  NY
Sbjct: 47  KIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNY 106

Query: 297 TIRITD 302
            +RI +
Sbjct: 107 GLRIVE 112


>gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
 gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
          Length = 115

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +QL V +   +   + +L ++  +  G V+           +  NG  +   E+  V   
Sbjct: 38  HQLPVQVTLELASAEMSLGELTQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 97

Query: 296 YTIRITDR 303
           Y +R+ + 
Sbjct: 98  YGVRLLEV 105


>gi|32477467|ref|NP_870461.1| flagellar motor switch protein fliN [fragment] [Rhodopirellula
           baltica SH 1]
 gi|32448018|emb|CAD77538.1| probable flagellar motor switch protein fliN [Fragment]
           [Rhodopirellula baltica SH 1]
          Length = 144

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +   ++++K    S      +  K  ++   ++  +  KK  L+ ++ L  G ++ F  
Sbjct: 45  RMSENATEDKPTEPSPPTSSMYKEKVLKIRTTVNVTLAEKKEPLRKILALVPGSMLTFDV 104

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQ 308
                  L A G  I + E  ++G  + +R+ +  +  + 
Sbjct: 105 HCDRPLTLRAGGHPIATGETVKIGDKFGLRVREIGVPKED 144


>gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
 gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
          Length = 118

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +QL V +   +   + +L ++  +  G V+           +  NG  +   E+  V   
Sbjct: 41  HQLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 100

Query: 296 YTIRITDR 303
           Y +R+ + 
Sbjct: 101 YGVRLLEV 108


>gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449]
 gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC
           51449]
          Length = 117

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 28/73 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +    +  +   K  L +++  + G +I           +  NG+ I   E+    +
Sbjct: 34  LLDMEALFNAELGSTKIPLGEILRFEKGSIIDLGKPAGESVEIFINGRVIGKGEVMVYER 93

Query: 295 NYTIRITDRINFD 307
           N  IRI + ++ +
Sbjct: 94  NLAIRINEILDSN 106


>gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH]
 gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia
           profundicola AmH]
          Length = 103

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
                 V  ++ +     TL++++ L+ G VI     E   A +  NG+ I   E+    
Sbjct: 20  NLLDTEVLFESDLGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRIIGKGEVMVYE 79

Query: 294 KNYTIRITDRINFDQ 308
           KN  IR+ + ++ +Q
Sbjct: 80  KNLAIRLNEVLDANQ 94


>gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium
           BAC17H8]
          Length = 110

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 39/97 (40%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +++      +  +     R    ++V +   +   +  ++D++ L  G VI        
Sbjct: 11  AATETMDAETAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLNEGSVIELDRLAGD 70

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              + ANG  I   E+  VG+ + IR T+ ++   + 
Sbjct: 71  PLDILANGTMIAKGEVVMVGERFGIRFTEIVDPAARM 107


>gi|58038896|ref|YP_190860.1| flagellar motor switch protein [Gluconobacter oxydans 621H]
 gi|58001310|gb|AAW60204.1| Flagellar motor switch protein FliN [Gluconobacter oxydans 621H]
          Length = 105

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            L K        Q   E  S D      +  Y + V +   +      +  ++ L  G V
Sbjct: 1   MLDKDDFSVEKEQFSKEEISGDKTPNDLQAIYDIPVTLSAVLGRATMPINQLLKLGRGAV 60

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGK-NYTIRITDRINFD 307
           +    +      +  N + I   E+  V +    + +T+ +  +
Sbjct: 61  VELDRKIGDPIDILVNNRLIARGEVVMVDETRLGVTMTEIVKSE 104


>gi|254502033|ref|ZP_05114184.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
 gi|222438104|gb|EEE44783.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
          Length = 111

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 5/108 (4%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           IP + L      +     + E              + + V I   +   K  + D++ L 
Sbjct: 9   IPLDELE-----APDRAGEQEEIPHPQSAADLEAVFDVPVRISAVLGHSKMHVSDLLKLA 63

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            G V+    +      +  N + +   E+  V     + +T+ I  D+
Sbjct: 64  SGTVLELDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 111


>gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima
           DSM 10411]
 gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima
           DSM 10411]
          Length = 95

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + + +   +   +  +KD++  K G +I           ++   K +   E+  +   +
Sbjct: 17  DIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIENKPLGMGEVIVLDNKF 76

Query: 297 TIRITDRINFDQ 308
            IRIT+    D 
Sbjct: 77  AIRITNIFTKDD 88


>gi|91795009|ref|YP_564660.1| hypothetical protein Sden_3662 [Shewanella denitrificans OS217]
 gi|91717011|gb|ABE56937.1| hypothetical protein Sden_3662 [Shewanella denitrificans OS217]
          Length = 293

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 82/280 (29%), Gaps = 23/280 (8%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDIS---YTSCQSGKFSHIIHSFKENFVFSQASLSS 90
             S +      F   +      + + I+   Y S  +   S I    +        +   
Sbjct: 29  ARSRIVKRLSHFKRPVIDAVNRIFMPITRQGYPSLSTITLSEIDSPVQAETHLGWFACRH 88

Query: 91  WSSNFFI-GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                         +  L     G+    +     R  S  E +L KR    +  VL   
Sbjct: 89  QQKTLAWWRVDRCTLEQLASGYYGSQKNPLSSPL-RQPSQSEFRLIKRLFINVFEVL--- 144

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
                   P  E   +   ++   N  + E      +  T  ++A +  + +    L   
Sbjct: 145 --------PFEELDLEELEIELVKNHATIEADAVWALEFTQGSLAPALHIYMASSLL--- 193

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
               +      +  S DL    A    Q+ V +   +  +   +  +  +K G ++P   
Sbjct: 194 --GLVQDMPNQKPISTDLPTKLANWLTQMPVKLRLTLGHQDIPVDSIDQMKAGDILPINL 251

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             K+  +L+   K ++S  +         ++T   N  + 
Sbjct: 252 YPKS--VLAVGTKALFSATVHSHDGQMLAKLTQDTNHYED 289


>gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           TXDOH]
 gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           Bt4]
 gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
          Length = 115

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 30/77 (38%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   +     +L +++ +  G V+          ++  NG  +   E+  
Sbjct: 36  RHLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVV 95

Query: 292 VGKNYTIRITDRINFDQ 308
            G+NY ++I D  N   
Sbjct: 96  SGENYGLKIIDLENLGD 112


>gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
 gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
          Length = 122

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K   L D++    G VI           +  NG  +   E+  V + 
Sbjct: 45  KNIPVTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVNEK 104

Query: 296 YTIRITDRINF 306
           Y +R+ D ++ 
Sbjct: 105 YGLRLIDVVDS 115


>gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
           BAA-613]
          Length = 320

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 94/302 (31%), Gaps = 41/302 (13%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSSWSSNFFIGCSNNLVI 105
            I    +   V +S +  +      +        V  ++   +   S++     +   +I
Sbjct: 19  NILGSLLGRSVKMSVSKVEETDMGSLAEGLPHFNVAIESRKAVGGMSADQLYIFAKEDMI 78

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEK-------KLAKRTIAQISAVLNQ------CIST 152
            L   ++G   +    L   +LST+++                +   +            
Sbjct: 79  RLTNYIMGVPVDAQSPLDEIALSTLKEVASQCVGAAMDELNDFLGRDMRDTITRISAFDN 138

Query: 153 TQESSPNLEDFYDIDYLKKN------TNRLSNEFVTTINMNMT-IENVASSFVLIIPQET 205
           T+     +  +   D +            + ++        +  +  ++    +   +  
Sbjct: 139 TERIQDIIRSWNAEDSVLLMGLHYVIDGVVESDAYIVAAQALKQVLGISDMADMPCQETG 198

Query: 206 LLKTTLISLSSQNKSENQS-------------------EDLIDPFARKTYQLNVNIDTRI 246
                + +   Q     ++                   ++ I    +K   + +++  R+
Sbjct: 199 GQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKKLLDITLDVSVRL 258

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                ++KD+++LK GQ++    +  + A +  NG+ I   ++   G  +  RI + +  
Sbjct: 259 GSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGDRFGARIIEVVGK 318

Query: 307 DQ 308
            +
Sbjct: 319 RE 320


>gi|54307254|ref|YP_128274.1| putative flagellar motor switch protein [Photobacterium profundum
           SS9]
 gi|46911674|emb|CAG18472.1| putative flagellar motor switch protein [Photobacterium profundum
           SS9]
          Length = 117

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + VN+   +   +  + D++ + +G VI           +  NG  +   E+  V  
Sbjct: 37  IRNIPVNLTLEVASTELMVGDLMNIGLGTVIELDKISGEAMDVKVNGTLLGHAEVVIVNN 96

Query: 295 NYTIRITDRINFDQKSLKNF 314
            Y +R+   ++ D   LK  
Sbjct: 97  KYGLRLVSVVD-DNDMLKGL 115


>gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas
           mendocina NK-01]
 gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas
           mendocina NK-01]
          Length = 279

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 77/276 (27%), Gaps = 28/276 (10%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P   +   +          I      L   Y + +   F     +++++           
Sbjct: 12  PADSLTRLKPQKLGRHYHKIPHYIRELSSKYPRIISDYFLRNYRINLELLRVDVHEQVDK 71

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
                ++                        L+   LE   G     +P      +ST E
Sbjct: 72  EAECLYRSPL-----------GKVGFAMDRPLLTEALECYYGG--TCLPNHEETPVSTSE 118

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +++  R    +S +  + I   Q            D           E+V   N    I 
Sbjct: 119 QRMRTRLGLDVSQLFARSILAGQTFGKLEPYDNTYDETTW-------EYVAQFNFTSHIT 171

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +S  + +  + + + T         ++  +         +  QL V +D  +   + 
Sbjct: 172 GSQASIFIYLDTQLVDELTSRLTPPAPAAQAGNSL------NQIRQLPVRLDCVVASLQM 225

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            L  V+ L+ G ++P          +  N ++++  
Sbjct: 226 PLSQVLALRPGDILPMRLL--ERCDVQINQQKLFRG 259


>gi|308273527|emb|CBX30129.1| hypothetical protein N47_D29380 [uncultured Desulfobacterium sp.]
          Length = 71

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   +  + D++ L  G +I    +      +    K I   E+  V   + IR+T+ 
Sbjct: 1   MELGQTRMLINDLLQLGQGSIIELNKQIGDPIDIFICDKLIAKGEVVVVDDKFGIRLTNI 60

Query: 304 INFDQKS 310
           I+  ++ 
Sbjct: 61  ISPTERI 67


>gi|224825754|ref|ZP_03698858.1| surface presentation of antigens (SPOA) protein [Lutiella
           nitroferrum 2002]
 gi|224601978|gb|EEG08157.1| surface presentation of antigens (SPOA) protein [Lutiella
           nitroferrum 2002]
          Length = 291

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 73/213 (34%), Gaps = 12/213 (5%)

Query: 91  WSSNFF-IGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                  +  +  L++ +L+   G             R  +  E++LA+    +++A L 
Sbjct: 79  LDGAGIGVNVARPLLLRILDYRYGGRASPALPAAQPPRE-TETERRLARMLGERLTARLV 137

Query: 148 QCISTTQES-SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
           Q +        P L+    ++ L          +   + +       AS   L +     
Sbjct: 138 QAVRRLSRRPLPTLKAPPAVETLPFPPGDAPA-WHMQLTLGEAGSGGASQIGLALDAAVF 196

Query: 207 LKT-TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            +    + L +        + L  PFA +     + +  R+  K+ TL +++ L++G V+
Sbjct: 197 AQVLRQLPLQAALPGPAAGKTLARPFAEQLS---IRLSARLMEKRLTLGEILDLRVGSVL 253

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           P     +  A +      +++  +        +
Sbjct: 254 PVSL--QQQADVYIGRTRVFTAAVAESHGKLCL 284


>gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS155]
 gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS155]
          Length = 118

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 30/88 (34%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           S++         +        QL V +   +   + +L ++  +  G VI          
Sbjct: 20  SESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPL 79

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDR 303
            +  NG  +   E+  V   Y +R+ + 
Sbjct: 80  DIRVNGALLGRGEVVEVAGRYGVRLLEI 107


>gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
 gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
          Length = 118

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 30/88 (34%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           S++         +        QL V +   +   + +L ++  +  G VI          
Sbjct: 20  SESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPL 79

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDR 303
            +  NG  +   E+  V   Y +R+ + 
Sbjct: 80  DIRVNGALLGRGEVVEVAGRYGVRLLEI 107


>gi|315179666|gb|ADT86580.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
           11218]
          Length = 272

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 76/221 (34%), Gaps = 33/221 (14%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
               F+   ++++ITL +   GA+      +    L++ +++L +R    ++        
Sbjct: 85  GGALFVRLDSHMLITLADRFYGANMARSQSV----LTSSDRRLQERIGKVVAH-----WV 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
             QE              + +   + N       +++   +      LI+  + +     
Sbjct: 136 APQEMW------------QLHEGDIGNGIGLKAELSVRYADQHGVLTLIMESQLVQTLID 183

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                       + +L   F R      V ++  ++ K   L +V+ L    ++P     
Sbjct: 184 QL------DLQPNTELNAQFRRSLQHTPVRLNVLLSKKTMPLSEVLRLTPNDILPIDLL- 236

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            +   +S   + ++S  +        +     +N D++SL+
Sbjct: 237 -STVPVSIGHERLFSGRIAEQEGQLVL----ILNQDKESLR 272


>gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
 gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
          Length = 113

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 29/71 (40%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            R   ++ V +   +      L D+++ + G  +          ++  NG  +   E+  
Sbjct: 34  MRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEPLVIKVNGTPVGLGEVVV 93

Query: 292 VGKNYTIRITD 302
            G++Y +RI +
Sbjct: 94  SGEHYGLRIIE 104


>gi|156976198|ref|YP_001447104.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527792|gb|ABU72877.1| hypothetical protein VIBHAR_04969 [Vibrio harveyi ATCC BAA-1116]
          Length = 272

 Score = 65.8 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 50/305 (16%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70
           P+  I L  +         I +   SL       L    +  +  + ++ +  + +  +F
Sbjct: 8   PISDIKLLDVELLGKPIHIIREKLESLISESCSGLTNELQNWLSTNKIEANLVAVELHRF 67

Query: 71  SHIIHSFKENFVF----SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
           S          +     +           +I      +I L +   GA+ E         
Sbjct: 68  S--------PTLLDKDQTSTYQHQDGGMVYIYGDAQALIKLADRFYGAATERTSTS---- 115

Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           L+  + +L +R    I   L   +                     +              
Sbjct: 116 LTASDLRLQERISRIIINWLAPQEMW-------------------QTCEYETPRGIGLHA 156

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            +++  E+   +  L +    +             + +   DL  PF R      V ++ 
Sbjct: 157 ELSIAFEDFQGAIHLKLDSTMIQTLIEQL------ALHNDTDLYQPFCRSLESTPVRLNV 210

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            ++ K   L DVV L+   ++P          +S   + ++S  +        +      
Sbjct: 211 VLSKKTMALSDVVGLQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IF 264

Query: 305 NFDQK 309
           N D++
Sbjct: 265 NPDKE 269


>gi|86157133|ref|YP_463918.1| surface presentation of antigens (SPOA) protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773644|gb|ABC80481.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 324

 Score = 65.8 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/311 (10%), Positives = 73/311 (23%), Gaps = 47/311 (15%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ-AS 87
             +      LG        +   + +  +V ++              +            
Sbjct: 15  AELAAAPRRLGAAVAVAAARALSDLVGAEVSVTGRPVPG-------RALPRPAAARIAID 67

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-------------------S 128
           L +      +     LV+ L++ + G      P      +                   +
Sbjct: 68  LPALPGTAILEVEPALVVRLVDRMAGGDGGPAPAAALTPVEATALELLALAALDGACGVA 127

Query: 129 TVEKKLAKRTIAQISA-------VLNQCISTTQESSPNLEDFYDIDYLK---------KN 172
            VE++LA R     +         L       +  +  L     +  L+           
Sbjct: 128 EVEERLAPRLARATAEPAGALALELEIAAGQARGHARLLVPPAAVRALRGPADLDRRVPV 187

Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI---SLSSQNKSENQSEDLID 229
              L           +         +++ P         +     +              
Sbjct: 188 PGSLRRGTAALTAAELDALE-PGDVLVVDPPADGRDALALPGGLRALGRIDGEGFHVEET 246

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
               +  QL V ++  +      L +V  L+ G V+      +    L    + +   EL
Sbjct: 247 EMIERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAVARGEL 306

Query: 290 GRVGKNYTIRI 300
             V     +RI
Sbjct: 307 VDVEGAVGVRI 317


>gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1]
 gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1]
          Length = 108

 Score = 65.8 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%)

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
             DP   +   +NV I   +      ++ ++ +  G VIP          + AN   +  
Sbjct: 21  WSDPSVSQVKAVNVEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVAR 80

Query: 287 CELGRVGKNYTIRITD 302
            E+        I +T 
Sbjct: 81  GEIQISDDKIAIAVTR 96


>gi|91200231|emb|CAJ73275.1| strong similar to flagellar motor switch protein FliN [Candidatus
           Kuenenia stuttgartiensis]
          Length = 120

 Score = 65.8 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 28/78 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +      +KD++ L  G ++       T   L   GK +   E+  V
Sbjct: 39  DLILDVTVPVSVELGRANMLIKDILALSQGSIVELEKVAGTPVELLVRGKLLARGEVVVV 98

Query: 293 GKNYTIRITDRINFDQKS 310
            + + ++IT       + 
Sbjct: 99  EERFGLKITAICGPQDRV 116


>gi|114797535|ref|YP_758983.1| SPOA family protein [Hyphomonas neptunium ATCC 15444]
 gi|114737709|gb|ABI75834.1| SPOA family protein [Hyphomonas neptunium ATCC 15444]
          Length = 246

 Score = 65.8 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 12/214 (5%)

Query: 99  CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK---LAKRTIAQ-ISAVLNQCISTTQ 154
            S  L     +     +   + +  ++   + ++      K        ++        +
Sbjct: 26  VSPGLCAIATDGA--GAARIVAKRLSQDFESAKEASALFLKLMFEAPAVSLWRATAEALE 83

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
               +       D ++   N  ++     I  ++  E +     L+   + L        
Sbjct: 84  GHQADTLASPLSDPMQAAGNFETDSRYLVIAYSVMPEALQCQIWLVFDLDYL--MGCAHE 141

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           + +  +EN+               ++ ++  ++    T+ +   LK+G +IP    +   
Sbjct: 142 AERRAAENKRPSTSRQLRDSVMSSSIRVEAVLDKISMTIGECSRLKVGDLIPLPDTDPGS 201

Query: 275 AIL---SANGK-EIYSCELGRVGKNYTIRITDRI 304
             L   + NG+ EI  CE+G   +   +++   +
Sbjct: 202 VRLNAETVNGQIEIGQCEMGVWKRQRALKLKQPV 235


>gi|163802008|ref|ZP_02195904.1| type III secretion protein [Vibrio sp. AND4]
 gi|159174149|gb|EDP58957.1| type III secretion protein [Vibrio sp. AND4]
          Length = 321

 Score = 65.8 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q K  N ++           QL + +   +  +  TL+ +  L+ G              
Sbjct: 227 QEKESNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPVSNPVT 286

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           + ANGK I  CEL  + +   +R+ +     Q+ +
Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQEPV 321


>gi|114569234|ref|YP_755914.1| flagellar motor switch protein [Maricaulis maris MCS10]
 gi|114339696|gb|ABI64976.1| flagellar motor switch protein FliN [Maricaulis maris MCS10]
          Length = 118

 Score = 65.8 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 26/74 (35%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + VNI   +      +  ++ L  G V+    +      +  N + +   E+  V  
Sbjct: 43  VFDVPVNISAVLGKAHIDVNSLLKLTSGSVVELDRKIGEAIDIYVNNRLVARGEVVVVDD 102

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I    
Sbjct: 103 RLGVTMTEIIKDGD 116


>gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 128

 Score = 65.8 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + V +   +     T+++V+ L  G +I           +S N ++    E+  +
Sbjct: 42  KHIEDVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGELVTMSINNQKFGRGEVMVI 101

Query: 293 GKNYTIRITDRINF 306
             NY IRIT     
Sbjct: 102 NDNYGIRITSVFKP 115


>gi|167590549|ref|ZP_02382937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ubonensis Bu]
          Length = 211

 Score = 65.8 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 54/212 (25%), Gaps = 14/212 (6%)

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           W  +  +       + +      A             + +   L                
Sbjct: 3   WRCHGAVLFDAPDALAV----FFAERPAARPDARAVYAGLPVPLVFEIGRTELTTAELA- 57

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                    +E +   +       RL       I    +   +    +  +P   L  T 
Sbjct: 58  DVVAGDIIAIEHWRAHEQNLLCVARLPAAPAWEITGRPSGNRLTVERIREMP---LEPTR 114

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
             +  + +      E       R    L V++   +      L ++  L+ G VI     
Sbjct: 115 TDTPPTLSPDAPPHEA-----PRTLDALAVDLRFELPSTSMPLGELAVLQPGAVIELQQG 169

Query: 271 EKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
                  L ANG  I +  L  VG+   +R+ 
Sbjct: 170 INQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 201


>gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
 gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
          Length = 118

 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             L V +   +   + +L +++ L  G ++           L  NG  +   E+  V   
Sbjct: 41  SHLPVQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVVEVNGR 100

Query: 296 YTIRITDR 303
           Y +R+ + 
Sbjct: 101 YGVRLLEV 108


>gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
 gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
          Length = 123

 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT------YQLNVNIDTRINLKKTTLK 254
           +P+    K  +     +  S+ +  +L                + +     +   +  L 
Sbjct: 1   MPETESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL 60

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            ++  + G VI              NG+ I   E+    +N  IR+ + ++ +
Sbjct: 61  QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSN 113


>gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
 gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
          Length = 111

 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 31/77 (40%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +   ++ V +   +     +L +++ +  G V+          ++  NG  +   E+  
Sbjct: 32  RQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVV 91

Query: 292 VGKNYTIRITDRINFDQ 308
            G+NY +++ D  N   
Sbjct: 92  SGENYGLKVIDLENLGD 108


>gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4]
 gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4]
          Length = 122

 Score = 65.4 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K+  L D++    G VI           +  NG  +   E+  +   
Sbjct: 45  KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104

Query: 296 YTIRITDRINF 306
           Y +R+ +  + 
Sbjct: 105 YGLRLIEVHDS 115


>gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum
           SL003B-26A1]
 gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum
           SL003B-26A1]
          Length = 112

 Score = 65.4 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 32/102 (31%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           L          +  E              + + V I   +   +  + D++ L  G V+ 
Sbjct: 11  LDELESPGRRSDDGEEGVHVQSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLAAGTVLE 70

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              +      +  N + +   E+  V     + +T+ I  D+
Sbjct: 71  LDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 112


>gi|90577376|ref|ZP_01233187.1| flagellar motor switch protein [Vibrio angustum S14]
 gi|90440462|gb|EAS65642.1| flagellar motor switch protein [Vibrio angustum S14]
          Length = 121

 Score = 65.4 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 217 QNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           Q +   ++  L    +++      ++ V +   ++  + +L +++    G VI       
Sbjct: 21  QLEQFEETPQLDSSMSQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNG 80

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
               +  NG  +   E+  + + Y +R+ D +     ++  
Sbjct: 81  EPLDVKVNGSLMGHAEVVVINEKYGLRLIDVVESPLNTMDG 121


>gi|118593639|ref|ZP_01551015.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
 gi|118433750|gb|EAV40411.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
          Length = 111

 Score = 65.4 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           IP + L         S+      + DL        + + V I   +   +  + D++ L 
Sbjct: 9   IPLDELEAPERRLDDSETHVPQSAADL-----EAVFDVPVRISAVLGHSRMHVSDLLKLA 63

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            G V+    +      +  N + +   E+  V     + +T+ I  D+
Sbjct: 64  SGTVLELDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 111


>gi|89072283|ref|ZP_01158862.1| flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89051815|gb|EAR57267.1| flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 121

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 38/103 (36%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
            + L   +++      +         ++ V +   ++  + +L +++    G VI     
Sbjct: 19  DLQLEQFDETPQLDNSMSQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKL 78

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
                 +  NG  +   E+  + + Y +R+ D +     ++ +
Sbjct: 79  NGEPLDVKVNGSLMGHAEVVVINEKYGLRLIDVVESPLNTMDS 121


>gi|209966468|ref|YP_002299383.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|209959934|gb|ACJ00571.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 105

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 24/75 (32%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + V +  R+  ++  +  ++ L    V+           L  N + +   EL  
Sbjct: 17  RNSILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVDLFVNDRLVARGELVV 76

Query: 292 VGKNYTIRITDRINF 306
           V     + I + +  
Sbjct: 77  VDGRLGLTIVELMPQ 91


>gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
 gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
          Length = 123

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ VN+   +   + TLK+++ +  G VI           +  NG      E+  +  NY
Sbjct: 47  KIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNY 106

Query: 297 TIRITD 302
            +RI +
Sbjct: 107 GLRIVE 112


>gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 120

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K+  L D++    G VI           +  NG  +   E+  V   
Sbjct: 43  KNIPVTVTLEVASKEVALGDLMKAGEGSVIELDKMNGEPLDVKVNGSLMGHAEVVVVNDK 102

Query: 296 YTIRITDRINF 306
           Y +R+ D ++ 
Sbjct: 103 YGLRLIDVVDE 113


>gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15]
 gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000]
 gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15]
 gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000]
          Length = 103

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 26/69 (37%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   +NV I   +      ++ ++ +  G VIP   +      + AN   I   E+    
Sbjct: 23  QVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQISD 82

Query: 294 KNYTIRITD 302
               I++T 
Sbjct: 83  DRIAIQVTR 91


>gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
 gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
          Length = 128

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 2/104 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTL 259
           P  +     L       KS ++ +             QL V +   +   + +L ++  +
Sbjct: 14  PILSDDDFLLDDDIFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRM 73

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             G VI           +  NG  +   E+  V   Y +R+ + 
Sbjct: 74  GEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGRYGVRLLEI 117


>gi|308050040|ref|YP_003913606.1| surface presentation of antigens (SPOA) protein [Ferrimonas
           balearica DSM 9799]
 gi|307632230|gb|ADN76532.1| surface presentation of antigens (SPOA) protein [Ferrimonas
           balearica DSM 9799]
          Length = 287

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 65/226 (28%), Gaps = 28/226 (12%)

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                +           +  L  +  G   +          S  E +L KR +      L
Sbjct: 87  ERQPLTWWG---IDRCSLDQLASSYYGG-GQRPLSCPLTPPSQSELRLVKRLMVAALDAL 142

Query: 147 -NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP--Q 203
             +           LE    +                    +        +    +P  Q
Sbjct: 143 AQERWDIDALDLEVLEPGQTLPAP------------LRWQFD-------WARESALPKMQ 183

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
             L    L SL+        + DL     R+ +QL + +  ++  +    + +  L+ G+
Sbjct: 184 WMLSDAALASLTRTPMQAPVAPDLAQRLKRRLHQLPIRLSCQLGGQSMPTEALAGLQPGE 243

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           ++P     ++   ++  G+ I+   +         ++T  ++  + 
Sbjct: 244 ILPLTLVRRSP--VAVGGRPIFHATVHAHEGQLVAKLTHELHQHED 287


>gi|144897407|emb|CAM74271.1| flagellar motor switch protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 107

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 27/76 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              Y + V +   +      +  ++ L  G V+    +      +  N + +   E+  V
Sbjct: 31  EAVYDIPVQVSAVLGKANMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 90

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  D+
Sbjct: 91  EDRLGVTMTEIIKTDR 106


>gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia oklahomensis EO147]
 gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia oklahomensis C6786]
          Length = 115

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 30/71 (42%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +   ++ V +   +     TL +++ ++ G V+          ++  NG  +   E+  
Sbjct: 36  MQLLAKIPVQLTLEVGSATITLAELMAIEEGSVLELDRLAGEPLLIKINGTPVGHAEVVV 95

Query: 292 VGKNYTIRITD 302
            G NY +++ D
Sbjct: 96  SGDNYGLKLLD 106


>gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum
           kujiense DSM 16994]
          Length = 114

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 2/95 (2%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                      +    +D        + V   + +     TL +++ L+ G VI      
Sbjct: 10  SLHHEHGFDPEKELSWMDY--DGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPA 67

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                   N + I   E+    KN  IRI + ++ 
Sbjct: 68  GESVESYVNRRIIGKGEVMVYEKNLAIRINEVLDS 102


>gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
 gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
          Length = 171

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P+    K           +               + + +++D  +   +  + D++ L I
Sbjct: 27  PRYDFDKVADALADVSPAASRSPVSPKRDATNSLWSIPLDVDVVLGHARLPVSDLMNLSI 86

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCEL---GRVGKNYTIRITD 302
           G  +    R      + ANG  I   +L      G+ + +R+T 
Sbjct: 87  GDTLSLDRRIGDPVEIVANGTTIAWGQLCAVDESGERFGVRLTK 130


>gi|163850081|ref|YP_001638124.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218528684|ref|YP_002419500.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240137214|ref|YP_002961683.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           AM1]
 gi|254559226|ref|YP_003066321.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           DM4]
 gi|163661686|gb|ABY29053.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218520987|gb|ACK81572.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240007180|gb|ACS38406.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           AM1]
 gi|254266504|emb|CAX22268.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           DM4]
          Length = 108

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               ++ V +   +      + D++ L  G V+P  HR      +  NG+ I   E+  V
Sbjct: 25  DSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIVIV 84

Query: 293 ---GKNYTIRITDRINF 306
                 + + +T+ +  
Sbjct: 85  EEDNSRFGVSLTEVVGP 101


>gi|255028593|ref|ZP_05300544.1| flagellar motor switch protein FliM [Listeria monocytogenes LO28]
          Length = 99

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 39/98 (39%)

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
           S+  + +P  ++ +      +    + ++  +      ++ +Q+      R+   KTT K
Sbjct: 1   STMRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWK 60

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++  L++G V+      +         K  + C +G+ 
Sbjct: 61  ELNKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKK 98


>gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei 668]
 gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305]
 gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           DM98]
 gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia
           pseudomallei 1655]
 gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei]
 gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei 668]
 gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305]
 gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia
           pseudomallei 1655]
          Length = 115

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 31/77 (40%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +   ++ V +   +     +L +++ +  G V+          ++  NG  +   E+  
Sbjct: 36  RQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVV 95

Query: 292 VGKNYTIRITDRINFDQ 308
            G+NY ++I D  N   
Sbjct: 96  SGENYGLKIIDLENLGD 112


>gi|153832536|ref|ZP_01985203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           harveyi HY01]
 gi|148871331|gb|EDL70203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           harveyi HY01]
          Length = 321

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q K  N ++           QL + +   +  +  TL+ +  L+ G              
Sbjct: 227 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVT 286

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           + ANGK I  CEL  + +   +R+ +     Q+
Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQE 319


>gi|255022052|ref|ZP_05294058.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
 gi|254968538|gb|EET26094.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
          Length = 120

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + I   +   +   K+++ L  G VI           +  NG+     E   V
Sbjct: 36  DLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPLTIYINGEIFAYGEAVLV 95

Query: 293 G-KNYTIRITDRINFDQ 308
             + + +R+T  +N + 
Sbjct: 96  NQERFGVRLTALVNKED 112


>gi|269963171|ref|ZP_06177506.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832135|gb|EEZ86259.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 321

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 1/91 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++     +  +       QL + +   +  +  TL+ +  L+ G              + 
Sbjct: 230 ETNMNDINSSEALTDH-QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMR 288

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           ANGK I  CEL  + +   +R+ +     Q+
Sbjct: 289 ANGKIIGECELVNINERLGVRVLELFGGSQE 319


>gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
           12198]
 gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
           12198]
          Length = 112

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 28/75 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                +       +   K T+K+++  + G VI           +  N + +   E+   
Sbjct: 28  EGLLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVDVFINTRIVGRGEVMVY 87

Query: 293 GKNYTIRITDRINFD 307
            KN  IR+ + ++ +
Sbjct: 88  EKNLAIRLNEILDSN 102


>gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01]
 gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01]
          Length = 122

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K+  L D++    G VI           +  NG  +   E+  +   
Sbjct: 45  KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104

Query: 296 YTIRITDRINF 306
           Y +R+ D  + 
Sbjct: 105 YGLRLIDVHDS 115


>gi|41834183|gb|AAS13321.1| VscQ [Vibrio harveyi]
          Length = 321

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q K  N ++           QL + +   +  +  TL+ +  L+ G              
Sbjct: 227 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVT 286

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           + ANGK I  CEL  + +   +R+ +     Q+
Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQE 319


>gi|254294568|ref|YP_003060591.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
 gi|254043099|gb|ACT59894.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
          Length = 115

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + V++   I      + +++ L  G V+    R      +  N + +   E+  V    
Sbjct: 43  DVPVSVQAVIGRTTMEVSELMHLGEGSVLELDRRVGEAIDIYVNSRLVARGEIVVVDDRL 102

Query: 297 TIRITDRIN 305
            + +T+ I 
Sbjct: 103 GVTMTEIIK 111


>gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
 gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
          Length = 124

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 2/104 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTL 259
           P  +     L       KS ++ +             QL V +   +   + +L ++  +
Sbjct: 10  PILSDDDFLLDDDIFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRM 69

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             G VI           +  NG  +   E+  V   Y +R+ + 
Sbjct: 70  GEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGRYGVRLLEI 113


>gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 93

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                ++V +   +   +  LKDV+ L    V+           +  NGK I   E+   
Sbjct: 9   DLIMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGEVVAQ 68

Query: 293 GKNYTIRITDRINFD 307
           G  + +RI + +  D
Sbjct: 69  GDRFGLRIVELVGQD 83


>gi|156974016|ref|YP_001444923.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116]
 gi|156525610|gb|ABU70696.1| hypothetical protein VIBHAR_01727 [Vibrio harveyi ATCC BAA-1116]
          Length = 322

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q K  N ++           QL + +   +  +  TL+ +  L+ G              
Sbjct: 228 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVT 287

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           + ANGK I  CEL  + +   +R+ +     Q+
Sbjct: 288 MRANGKIIGECELVNINERLGVRVLELFGGSQE 320


>gi|260427005|ref|ZP_05780984.1| surface presentation of antigens protein [Citreicella sp. SE45]
 gi|260421497|gb|EEX14748.1| surface presentation of antigens protein [Citreicella sp. SE45]
          Length = 355

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 80/269 (29%), Gaps = 21/269 (7%)

Query: 43  KKFLPKIFKEKMDLDVDISYT----SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
            K L +      D+  D++      S +      ++       +         +    + 
Sbjct: 4   AKALRRALSRTADVLWDLALVTHGVSQEMADQDGVVEMLPSGTLLLLLDGPGGALGLAM- 62

Query: 99  CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
               ++  L+E         +P +  R ++  +  +    +      L + +       P
Sbjct: 63  IDREIMTGLIEVQTLLQVTQMP-VEERPITQTDAAMMAPLVDGTLDRLERYLEG-HPLRP 120

Query: 159 NLEDFYDIDYLKKNTNR-----LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
               F     ++           +      +++++ +     + +L++P           
Sbjct: 121 QFAGFRFGAMVEDARTAGLLLDAAGYRAFNVSVDLALGRRKGTILLVLP--------DRP 172

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            + +  +E+       P  RK   L V +D  +      L     L+ G +IP       
Sbjct: 173 DAGKADAEDGDAATPGPHERKMKLLPVRMDAVLCSLTIPLSAAQRLRAGDLIPLPPEALD 232

Query: 274 CAIL-SANGKEIYSCELGRVGKNYTIRIT 301
                +  G  +    LG++     +R++
Sbjct: 233 SVEFVAGAGPAVAGGRLGQMNGMRAVRLS 261


>gi|170748132|ref|YP_001754392.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654654|gb|ACB23709.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
          Length = 130

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               ++ V +   +      + +++ L  G ++P  HR      +  NG+ I   E+  V
Sbjct: 47  DSILRIPVLMQVVLGSATMPVSNLMKLGRGAIVPLDHRVGEPVDVVVNGRVIARGEVVVV 106

Query: 293 ---GKNYTIRITDRINF 306
                 + + +T+ +  
Sbjct: 107 EDDNSRFGVSLTEIVGP 123


>gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
           13177]
          Length = 115

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 31/77 (40%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +   ++ V +   +     +L +++ +  G V+          ++  NG  +   E+  
Sbjct: 36  RQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEVVV 95

Query: 292 VGKNYTIRITDRINFDQ 308
            G+NY ++I D  N   
Sbjct: 96  SGENYGLKIIDLENLGD 112


>gi|188579886|ref|YP_001923331.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
 gi|179343384|gb|ACB78796.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
          Length = 108

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               ++ V +   +      + D++ L  G V+P  HR      +  NG+ I   E+  V
Sbjct: 25  DSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIVIV 84

Query: 293 ---GKNYTIRITDRINF 306
                 + + +T+ +  
Sbjct: 85  EEDNSRFGVSLTEVVGP 101


>gi|83859386|ref|ZP_00952907.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852833|gb|EAP90686.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
          Length = 125

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 26/74 (35%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + + VNI   +      +  ++ L  G V+    +      +  N + +   E+  V  
Sbjct: 50  VFDVPVNISAVLGKAHVDVNSLLRLTSGSVLELDRKVGEAIDIYVNSRLVARGEVVVVDD 109

Query: 295 NYTIRITDRINFDQ 308
              + +T+ I    
Sbjct: 110 RLGVTMTEIIKDGD 123


>gi|260779322|ref|ZP_05888214.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605486|gb|EEX31781.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 122

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K   L D++    G VI           +  NG  +   E+  V + 
Sbjct: 45  KNIPVTVTLEVASKDIALGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVNEK 104

Query: 296 YTIRITDRINF 306
           Y +R+ D ++ 
Sbjct: 105 YGLRLIDIVDS 115


>gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus
           saanensis SP1PR4]
 gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus
           saanensis SP1PR4]
          Length = 100

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/87 (10%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
             +       +          + ++   +   ++  LK+++ L  G VI           
Sbjct: 1   MEQVNENDPTVTPAL-DLLMDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVD 59

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDR 303
           L    + +   E+  +   + + +T+ 
Sbjct: 60  LVIGDRIVARGEVVVLNGYFALNVTEV 86


>gi|296283237|ref|ZP_06861235.1| flagellar motor switch protein [Citromicrobium bathyomarinum JL354]
          Length = 126

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 34/76 (44%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              +++ V +   +   + T+ +++++  G+V+    +      +  + + I   E+  +
Sbjct: 51  DAVHEVPVKMQAVLGRARMTVSELMSIAPGRVVELDRKVGEPVDIFVSNRLIARGEVVLI 110

Query: 293 GKNYTIRITDRINFDQ 308
            K   + +T+ ++ D 
Sbjct: 111 DKALGVTLTEIVHEDD 126


>gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
 gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
          Length = 128

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V     +   +  L +++  + G +I           +  N + +   E+   
Sbjct: 39  EGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQKPAGASVEIFVNDRVVGKGEVMVY 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IRI + ++ +
Sbjct: 99  ERNLAIRINEILDSN 113


>gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
 gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 116

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             ++ V +   +     +L D+  +  G V+           +  NG  I   E+   G 
Sbjct: 39  LRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSGD 98

Query: 295 NYTIRITD 302
           NY +R+ +
Sbjct: 99  NYGLRVVE 106


>gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1]
 gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5]
 gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5]
 gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1]
          Length = 117

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +      L++V+  + G VI              NG+ I   E+   
Sbjct: 33  KGLLDMEITFMAELGSTFIPLREVLRFERGSVIDLQKPAGESVDTFVNGRVIGKGEVMVY 92

Query: 293 GKNYTIRITDRINFD 307
            KN  IR+ + ++ +
Sbjct: 93  EKNLAIRLNEVLDSN 107


>gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
 gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
          Length = 122

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   +   +  L D+  +  G VI           +  NG  +   E+  VG  
Sbjct: 45  QQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRVNGALLGKGEVVEVGGR 104

Query: 296 YTIRITDR 303
           Y +R+ + 
Sbjct: 105 YGVRLLEV 112


>gi|315121855|ref|YP_004062344.1| putative flagellar motor switch protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495257|gb|ADR51856.1| putative flagellar motor switch protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 136

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           PQ  L  ++    S+ N    +S D I         + VNI   +      + ++V L  
Sbjct: 32  PQNDLDDSSEKISSNSNNIFEKSSDNI----DLIMNIPVNIQIILGSCCMQISNLVNLSK 87

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDRINFD 307
           G VI    R      ++ N ++I   E+  +     ++ +R+ + +N  
Sbjct: 88  GDVITLDKRVGEAVDITINNQKIAKGEITIMEDDDTHFGVRVIELLNSK 136


>gi|134300237|ref|YP_001113733.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           reducens MI-1]
 gi|134052937|gb|ABO50908.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           reducens MI-1]
          Length = 128

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 26/74 (35%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +  K    ++V+ L +G V+           +  N  +    E+  V  
Sbjct: 49  IEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIVND 108

Query: 295 NYTIRITDRINFDQ 308
            + +RI    +  +
Sbjct: 109 KFAVRINSITSPKK 122


>gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 127

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 27/66 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V++   +     T+++ ++L  G VI           +  NG ++   E+  +  
Sbjct: 47  LDDVEVDVSAELGQTAMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVIND 106

Query: 295 NYTIRI 300
            + +RI
Sbjct: 107 LFVLRI 112


>gi|116514990|ref|YP_802619.1| hypothetical protein BCc_047 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256844|gb|ABJ90526.1| flagellar motor switch protein, C-ring protein [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 134

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               + V +   ++ KK T+++++  K G ++           +  N   I   EL    
Sbjct: 59  ALSSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELVVNN 118

Query: 294 KNYTIRITDRI 304
             Y ++IT  +
Sbjct: 119 DCYGVQITKLL 129


>gi|254473327|ref|ZP_05086724.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
 gi|211957443|gb|EEA92646.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
          Length = 138

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            +  S++ +D        + V++   +      +  ++ L  G VIP  HR      +  
Sbjct: 44  EKGVSDENVDRNLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVV 103

Query: 280 NGKEIYSCELGRV---GKNYTIRITDRINFD 307
           NG+ +   E+  V      + + +T+ +   
Sbjct: 104 NGRTVARGEIVVVEDDNSRFGVSLTEIVGAK 134


>gi|327542145|gb|EGF28638.1| flagellar motor switch protein fliN [Rhodopirellula baltica WH47]
          Length = 99

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           ++++K    S      +  K  ++   ++  +  KK  L+ ++ L  G ++ F       
Sbjct: 5   ATEDKPTEPSPPTSSMYKEKVLKIRTTVNVTLAEKKEPLRKILALVPGSMLTFDVHCDRP 64

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR-INFDQ 308
             L A G  I + E  ++G  + +R+ +  +  + 
Sbjct: 65  LTLRAGGHPIATGETVKIGDKFGLRVREIGVPKED 99


>gi|170704156|ref|ZP_02894757.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria IOP40-10]
 gi|170130934|gb|EDS99660.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria IOP40-10]
          Length = 193

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 10/192 (5%)

Query: 111 LLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK 170
           +  A+          + +++   L           + +           +E +   +   
Sbjct: 1   MFFATPVATRADTRAAYASLPVPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNL 59

Query: 171 KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP 230
               R+       I    +   +    +  +P   L  T   + S+     +  +     
Sbjct: 60  LCVARVPAAPAWEITGRPSGNRLTVERIREMP---LEPTRTDTPSATTHDASADDA---- 112

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCEL 289
             R    L V++   +      L ++  L+ G VI            L ANG  I + +L
Sbjct: 113 -PRSLDGLAVDLRFELPPTSIPLGELGALQPGAVIELQQGINQSVIHLVANGMLIGTGQL 171

Query: 290 GRVGKNYTIRIT 301
             VG+   +R+ 
Sbjct: 172 IAVGQKLGVRVV 183


>gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
 gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
          Length = 118

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +QL V +   +   + +L ++  +  G V+           +  NG  +   E+  V   
Sbjct: 41  HQLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 100

Query: 296 YTIRITDR 303
           Y +R+ + 
Sbjct: 101 YGVRLLEV 108


>gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
 gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
          Length = 101

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 33/74 (44%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
                 V  ++ I   + ++++++ LK G +I         A +  NG+ I   E+    
Sbjct: 17  NLIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVYVNGRIIGKGEVMVYE 76

Query: 294 KNYTIRITDRINFD 307
           KN  IR+ + ++ +
Sbjct: 77  KNLAIRLNEVLDAN 90


>gi|304311654|ref|YP_003811252.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
 gi|301797387|emb|CBL45607.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
          Length = 379

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
             QL V +  ++   + TL ++  L+ G V P   +       +  N +     EL  +G
Sbjct: 305 LSQLPVELSLQVGQLQITLGELENLQPGYVFPMSSQNDELTLTVLVNQQPAGLGELVSIG 364

Query: 294 KNYTIRITD 302
               +RIT+
Sbjct: 365 NQLGVRITE 373


>gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99]
 gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27]
 gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12]
 gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
 gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38]
 gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
 gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
 gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27]
 gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12]
 gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
 gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38]
 gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
 gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7]
          Length = 123

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT------YQLNVNIDTRINLKKTTLK 254
           +P+    K  +     +  ++ +  +L                + +     +   +  L 
Sbjct: 1   MPETEANKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL 60

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            ++  + G VI              NG+ I   E+    +N  IR+ + ++ +
Sbjct: 61  QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSN 113


>gi|332162916|ref|YP_004299493.1| flagellar motor switch protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667146|gb|ADZ43790.1| Flagellar motor switch protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862339|emb|CBX72499.1| hypothetical protein YEW_GP28300 [Yersinia enterocolitica W22703]
          Length = 272

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 68/206 (33%), Gaps = 16/206 (7%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQ--LYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            N       +L++ +L +  G + E      + N   +  E +L  +   +I+ ++    
Sbjct: 66  GNIAFDIERSLLLNILNDYYGLTKEKNNSSIVDNTPKTQTEDRLKNKLSIEIADLILN-- 123

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                  P   +   I             +   ++  +        F L+I    + +  
Sbjct: 124 ------QPMFGEPLVIKNNNATPIV---NWSYRMDFLLKDYEDGG-FTLLIDTPHVDRLL 173

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
               +   + +         F +   QL + + ++++  + T  D++ +K G +IP    
Sbjct: 174 NTLHTESKEKKKTQTLSEKQFNQLVSQLPIRLTSQLSCSELTFFDLMAIKEGDIIPASLP 233

Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296
           E+    +    + ++S  +       
Sbjct: 234 ERFP--VFIGKQPLFSAVVTESRGKL 257


>gi|209964122|ref|YP_002297037.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|7025357|gb|AAF35847.1|AF220003_1 polar flagellar motor switch protein FpiN [Rhodospirillum centenum]
 gi|209957588|gb|ACI98224.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 108

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 27/76 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              Y + V I   +      +  ++ L  G V+    +      +  N + +   E+  V
Sbjct: 32  ESVYDIPVQISAVLGKCTMQVSSLMKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 91

Query: 293 GKNYTIRITDRINFDQ 308
                + +T+ I  D+
Sbjct: 92  EDRLGVTMTEIIKSDR 107


>gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           harveyi ATCC BAA-1116]
 gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116]
          Length = 122

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K+  L D++    G VI           +  NG  +   E+  +   
Sbjct: 45  KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104

Query: 296 YTIRITDRINF 306
           Y +R+ +  + 
Sbjct: 105 YGLRLINVHDS 115


>gi|15616703|ref|NP_239915.1| flagellar motor switch protein FliN [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386788|sp|P57183|FLIN_BUCAI RecName: Full=Flagellar motor switch protein FliN
 gi|25403545|pir||A84939 flagellar motor switch protein fliN [imported] - Buchnera sp.
           (strain APS)
 gi|10038766|dbj|BAB12801.1| flagellar motor switch protein fliN [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 133

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +    + VNI   +   +  +KD +    G ++      K    +  NG  I S E+  
Sbjct: 51  KKTILNVPVNITVELGTSRIKIKDFLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVV 110

Query: 292 VGKNYTIRITDRINF 306
           + + Y IRIT+  N 
Sbjct: 111 LEEKYGIRITNIKNS 125


>gi|219681459|ref|YP_002467844.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682015|ref|YP_002468399.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471134|ref|ZP_05635133.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621748|gb|ACL29904.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624302|gb|ACL30457.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085823|gb|ADP65905.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086396|gb|ADP66477.1| flagellar motor switch protein FliN [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311086975|gb|ADP67055.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087552|gb|ADP67631.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 133

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +    + VNI   +   +  +KD +    G ++      K    +  NG  I S E+  
Sbjct: 51  KKTILNVPVNITVELGTSRIKIKDFLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVV 110

Query: 292 VGKNYTIRITDRINF 306
           + + Y IRIT+  N 
Sbjct: 111 LEEKYGIRITNIKNS 125


>gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
 gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
          Length = 132

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-- 292
             ++ V +   +      + D++ L  G VIP  HR      +  NG+ +    +  V  
Sbjct: 51  ILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVED 110

Query: 293 -GKNYTIRITDRINFD 307
               + + +T+ +  +
Sbjct: 111 ENSRFGVSLTEIVGGN 126


>gi|27381990|ref|NP_773519.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
 gi|27355160|dbj|BAC52144.1| fliN [Bradyrhizobium japonicum USDA 110]
          Length = 124

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               ++ V +   +      + +++ L  G V+P  HR      +  NG+ +   E+  V
Sbjct: 42  DAILRIPVTMQVVLGSATIPVANLMKLGRGAVVPLDHRVGEPVDVVVNGRIVARGEVVVV 101

Query: 293 ---GKNYTIRITDRINF 306
                 + + +T+ +  
Sbjct: 102 EEDNSRFGVSLTEIVGP 118


>gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           sp. Ex25]
 gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
 gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           sp. Ex25]
 gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
          Length = 123

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K+  L D++    G VI           +  NG  +   E+  V   
Sbjct: 46  KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDK 105

Query: 296 YTIRITDRINF 306
           Y +R+ D  + 
Sbjct: 106 YGLRLIDVHDS 116


>gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|258622512|ref|ZP_05717534.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|262173378|ref|ZP_06041055.1| putative flagellar motor switch protein [Vibrio mimicus MB-451]
 gi|258585212|gb|EEW09939.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|261890736|gb|EEY36723.1| putative flagellar motor switch protein [Vibrio mimicus MB-451]
          Length = 267

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 33/209 (15%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN--QC 149
               F+   N ++I L +   GA+     +  +  L+  + ++ +R    I   L     
Sbjct: 87  GGRVFVHADNVVLIKLADRFYGAN----EERDSTKLTNSDLRIQERISKLIITKLAPDDM 142

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
            +                    +    +N       + +  +  A    L +    +   
Sbjct: 143 WA-------------------MSDFAPTNGVGLHAELIIQFDGFAGRVHLKLDSNLIQTL 183

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                         + DL  PF        V ++  +  K   L D+V+LK G +     
Sbjct: 184 VEQL------ELQSNTDLYQPFCHSLKSTRVRLNVVLIKKIMPLSDIVSLKPGDIFSIEL 237

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298
                  +    + ++S  +        +
Sbjct: 238 PSDIPISI--GHQPLFSGRIAERDDQLVL 264


>gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
 gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
 gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K+  L D++    G VI           +  NG  +   E+  V   
Sbjct: 46  KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLLGHAEVVVVNDK 105

Query: 296 YTIRITDRINF 306
           Y +R+ D  + 
Sbjct: 106 YGLRLIDVHDS 116


>gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180]
 gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908]
 gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24]
 gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571]
 gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571]
          Length = 120

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               ++ V +   +      + +++ L  G ++P  HR      +  NG+ I   E+  V
Sbjct: 38  ESVMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPVDVVVNGRIIARGEVMVV 97

Query: 293 ---GKNYTIRITDRINF 306
                 + + +T+ +  
Sbjct: 98  EEDNSRFGVTLTEIVGP 114


>gi|154252628|ref|YP_001413452.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
           DS-1]
 gi|154156578|gb|ABS63795.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
           DS-1]
          Length = 117

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 10/108 (9%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           + +P    + +   + +  ++ E +            + + VN+   +      + +++ 
Sbjct: 8   VALPDLANIDSLPPAEAGPSEHEEEQVRTAQDL-EAVFDVPVNVSAVLGKTHIEVSNLLK 66

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           L  G ++    +      +  N + +   E+  V     + +T+ +  
Sbjct: 67  LGRGAIVELDRKVGEAIDIYVNDRLVARGEVVVVDDRLGVTMTEIVKG 114


>gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
 gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
 gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
 gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20]
 gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464]
 gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16]
 gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30]
 gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57]
 gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1]
 gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470]
 gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470]
 gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51]
 gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A]
 gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695]
 gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
 gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
          Length = 131

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-- 292
             ++ V +   +      + D++ L  G VIP  HR      +  NG+ +    +  V  
Sbjct: 51  ILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVED 110

Query: 293 -GKNYTIRITDRINF 306
               + + +T+ +  
Sbjct: 111 ENSRFGVSLTEIVGG 125


>gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
 gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
          Length = 151

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            ++Q    +  +D         +Q+   +   +     ++ +++  K  QV+        
Sbjct: 57  AANQGGDASILKDWNP-----LHQIKARLQVCVGAVSLSVGELLGAKEHQVLRLDREIDH 111

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITD 302
              L+  GK +   +L  V  ++ +RIT+
Sbjct: 112 PVDLTIEGKVVARGQLVAVDGHFAVRITE 140


>gi|147678413|ref|YP_001212628.1| flagellar motor switch/type III secretory pathway protein
           [Pelotomaculum thermopropionicum SI]
 gi|146274510|dbj|BAF60259.1| flagellar motor switch/type III secretory pathway protein
           [Pelotomaculum thermopropionicum SI]
          Length = 126

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 12/111 (10%)

Query: 205 TLLKTTLISLSSQNKSENQSE------------DLIDPFARKTYQLNVNIDTRINLKKTT 252
           T  +       + +   +  +            D +         + + I   +      
Sbjct: 3   TEEEIRSFLARASSSDADIKKVQFPPLTPVKGMDRVKTSMSHLEDVQIEISVELGQTVMK 62

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +++V+ L+ G VI           +  N +     E+  +  ++ +RIT  
Sbjct: 63  VREVLGLEQGSVIRLDKAIGEAVEVVLNEQRFARGEVVVINDSFGVRITSI 113


>gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
 gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K+  L D++    G VI           +  NG  +   E+  V   
Sbjct: 46  KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDK 105

Query: 296 YTIRITDRINF 306
           Y +R+ D  + 
Sbjct: 106 YGLRLIDVHDS 116


>gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
 gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1]
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|258624665|ref|ZP_05719600.1| putative flagellar motor switch protein [Vibrio mimicus VM603]
 gi|258583057|gb|EEW07871.1| putative flagellar motor switch protein [Vibrio mimicus VM603]
          Length = 267

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 59/209 (28%), Gaps = 33/209 (15%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN--QC 149
               F+   N ++I L +   GA+     +  +  L+  + ++ +R    I   L     
Sbjct: 87  GGRVFVHADNVVLIKLADRFYGAN----EERDSTKLTNSDLRIQERISKLIITKLAPDDM 142

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
                + +P                   N       + +  +  A    L +    +   
Sbjct: 143 W-AISDFAPT------------------NGVGLHAELIIQFDGFAGRVHLKLDSNLIQTL 183

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                         + DL  PF        V ++  +  K   L D+V+LK G +     
Sbjct: 184 VEQL------ELQSNTDLYQPFCHSLKSTRVRLNVVLIKKIMPLSDIVSLKPGDIFSIEL 237

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298
                  +    + ++S  +        +
Sbjct: 238 PSDIPISI--GHQPLFSGRIAERDDQLVL 264


>gi|217976218|ref|YP_002360365.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
 gi|217501594|gb|ACK49003.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
          Length = 110

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               ++ V +   +      +  ++ L  G VIP  HR      +  NG+ I   E+  V
Sbjct: 29  ETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVVVNGRIIARGEIVVV 88

Query: 293 ---GKNYTIRITDRINF 306
                 + + +T+ +  
Sbjct: 89  EDDNSRFGVSLTEIVGP 105


>gi|319781691|ref|YP_004141167.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167579|gb|ADV11117.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 128

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 39/108 (36%), Gaps = 3/108 (2%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
             + +   +    + + +          +     + V+I   +   +  + D++ L+ G 
Sbjct: 19  RAIEELRGVLHEEEQRPDAAFRAASSANSSVIMNIPVDIQIILGSTEMPVSDLMALQKGS 78

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVG---KNYTIRITDRINFDQ 308
            +    R      +  NG++I   E+  +      + IR+T+ I   +
Sbjct: 79  TVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEIIAGTK 126


>gi|258622511|ref|ZP_05717533.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|258624666|ref|ZP_05719601.1| flagellar motor switch protein [Vibrio mimicus VM603]
 gi|262173377|ref|ZP_06041054.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
 gi|258583058|gb|EEW07872.1| flagellar motor switch protein [Vibrio mimicus VM603]
 gi|258585211|gb|EEW09938.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|261890735|gb|EEY36722.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
          Length = 123

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K+ TL +++    G VI           +  NG  +   E+  V   
Sbjct: 45  KGIPVVVTLEVASKEITLGELMKAGEGTVIELDKLNGEPLDVKVNGSLMGHAEIVIVNDK 104

Query: 296 YTIRITDRINF 306
           Y + +TD ++ 
Sbjct: 105 YGLHLTDVLSS 115


>gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
           ATCC 21756]
 gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
           ATCC 21756]
          Length = 83

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +   +NV I   +      ++ ++ +  G VIP   +      + AN   I   E+  
Sbjct: 1   MTQVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60

Query: 292 VGKNYTIRITD 302
                 I++T 
Sbjct: 61  SDDRIAIQVTR 71


>gi|254503358|ref|ZP_05115509.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
 gi|222439429|gb|EEE46108.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
          Length = 130

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + VNI   +      + +++ L  G VIP  HR      +  NG+ I   E+  V
Sbjct: 47  DTILGIPVNIQVVLGSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVV 106

Query: 293 ---GKNYTIRITDRINFDQKSLK 312
                 + + +T+ I+     L+
Sbjct: 107 EDDNSRFGVSLTEIISSQTSPLE 129


>gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
 gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
          Length = 122

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K+  L D++    G VI           +  NG  +   E+  +   
Sbjct: 45  KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104

Query: 296 YTIRITDRINF 306
           Y +R+ +  + 
Sbjct: 105 YGLRLINVHDS 115


>gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 150

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +D  +     T+++++ L+   +I         A L  NGK + S E+  +  N
Sbjct: 72  ESVPVTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVINDN 131

Query: 296 YTIRITDR 303
           +  R+ + 
Sbjct: 132 FGFRVAEV 139


>gi|170741400|ref|YP_001770055.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
 gi|168195674|gb|ACA17621.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
          Length = 125

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               ++ V I   +      + +++ L  G ++P  HR      +  NG+ I   E+  V
Sbjct: 43  DSVLRIPVLIQVVLGSATMPVANLMKLGRGAIVPLDHRVGEPVDIMVNGRVIARGEVVVV 102

Query: 293 ---GKNYTIRITDRINF 306
                 + + +T+ +  
Sbjct: 103 EEDNSRFGVSLTEIVGP 119


>gi|171323088|ref|ZP_02911720.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171091517|gb|EDT37147.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 193

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 10/192 (5%)

Query: 111 LLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK 170
           +  A+          + +++   L           + +           +E +   +   
Sbjct: 1   MFFATPAATRADTRAAYASLPVPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNL 59

Query: 171 KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP 230
               R+       I    +   +    +  +P   L  T   + S+     +  +     
Sbjct: 60  LCVARVPAAPAWEITGRPSGNRLTVERIREMP---LEPTRTDTPSATTHDASADDA---- 112

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCEL 289
             R    L V++   +      L ++  L+ G VI            L ANG  I + +L
Sbjct: 113 -PRSLDGLAVDLRFELPPTSIPLGELGALQPGAVIELQQGINQSVIHLVANGMLIGTGQL 171

Query: 290 GRVGKNYTIRIT 301
             VG+   +R+ 
Sbjct: 172 IAVGQKLGVRVV 183


>gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818]
 gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
           18818]
 gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
           18818]
          Length = 116

 Score = 63.1 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 28/73 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V  +  +   K  L +++  + G +I              NG+ I   E+    +
Sbjct: 34  LLDMEVIFNAELGNTKIALGEILRFEKGSIIDLGKPAGESIETFINGRVIGKGEVMVYER 93

Query: 295 NYTIRITDRINFD 307
           N  IRI + ++ +
Sbjct: 94  NLAIRINEILDSN 106


>gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31]
 gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp.
           K31]
          Length = 83

 Score = 63.1 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +   +NV I   +      ++ ++ +  G VIP   +      + AN   I   E+  
Sbjct: 1   MSQVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60

Query: 292 VGKNYTIRITD 302
                 I++T 
Sbjct: 61  SDDRIAIQVTR 71


>gi|21672366|ref|NP_660433.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008469|sp|Q8KA38|FLIN_BUCAP RecName: Full=Flagellar motor switch protein FliN
 gi|21622971|gb|AAM67644.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 133

 Score = 63.1 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +  + + +NI   +   K  +KD++    G ++    +++    + AN K I   E+  
Sbjct: 51  KKILFDIEMNITVELGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVF 110

Query: 292 VGKNYTIRITDR 303
               Y IRI   
Sbjct: 111 SNNKYGIRIISI 122


>gi|310823556|ref|YP_003955914.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396628|gb|ADO74087.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
           aurantiaca DW4/3-1]
          Length = 379

 Score = 63.1 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 26/276 (9%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R    LG++  + ++         + L +     +     ++       K        
Sbjct: 22  LTRAHVVLGERPQVSRMGQQALQSICESLGRELGCDVSAASHVAEAVVVPAK------GL 75

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
             + VF    LS+   +  +     ++   LE L G      P      L+ +E+     
Sbjct: 76  SLSAVFVFLELSATGGSAVLELEPPVLFAALERLAGGPARPGPMT---RLTRLEEASLAY 132

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
            +              +   P L     ++ +         +    + + +++    +  
Sbjct: 133 LVLAALMAFRTQGELQRWWGPRLAGM-TVNRMDALARLDGRKAHLGVELVLSVGQRTAGA 191

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
            L++P   L  T       ++ S             +    ++     +  ++    ++ 
Sbjct: 192 RLVLPAVVLESTCRKLPVQRDSSRAP----------EILAASLGARCFLGCRQLLPSELE 241

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           TL +G V+ F         L+  G       L   G
Sbjct: 242 TLAVGDVVVF-----EGVRLT-GGAPRGPGRLVTRG 271



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V ++  +      L ++ TL+ GQ++P         +L    + +   EL  +      
Sbjct: 313 PVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELVDIDGEIGA 372

Query: 299 RITDRIN 305
           RI   + 
Sbjct: 373 RILSLLP 379


>gi|148260473|ref|YP_001234600.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
 gi|146402154|gb|ABQ30681.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
          Length = 132

 Score = 63.1 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 3/104 (2%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           L    +S  +            D      Y + V +   +      +  ++ L  G V+ 
Sbjct: 30  LPLAPVSRRTAGDGPETQRPSRDL--EAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVE 87

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGK-NYTIRITDRINFDQK 309
              +      +  N + I   E+  + +    I +T+ +  D+ 
Sbjct: 88  LDRKAGDPIDIFVNNRLIARGEVVMLDETKLGITMTEIVKSDRN 131


>gi|288962690|ref|YP_003452984.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
 gi|288914956|dbj|BAI76440.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
          Length = 112

 Score = 63.1 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
               Y + V++   +      +  ++ L  G V+    +      +  N + +   E+  
Sbjct: 32  MNAIYNVPVDVQVVLGRTSMLVAQLLKLGRGAVLELERKVDEPVEVLVNHRLVARGEVVI 91

Query: 292 VGK-NYTIRITDRINFDQKS 310
           V      + +T+ +  + + 
Sbjct: 92  VEDQRLGVTLTEIVRTELEI 111


>gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion
           translocase SctQ) [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 445

 Score = 63.1 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 34/67 (50%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            Q+ VN+   +   + ++  ++ L+ G ++    + +    L+ NGK +   EL R+G+ 
Sbjct: 376 NQIPVNLTVEVGRIQMSMDHLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEV 435

Query: 296 YTIRITD 302
             +R+ +
Sbjct: 436 LGVRVLE 442


>gi|171320709|ref|ZP_02909722.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171094036|gb|EDT39134.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 272

 Score = 63.1 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 66/236 (27%), Gaps = 22/236 (9%)

Query: 83  FSQASLSSWSSNFFI-GCSNNLVIT----LLENLLGASHETIPQLYNRSLSTVE--KKLA 135
            +  +   WSS   +  C  +L       +L+ L   +   +    + + +  +    + 
Sbjct: 47  IAPLAPPPWSSAAHVWSCGPHLQWATEPRMLDRL---ARRALDLPDDFAATPADHCADVL 103

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
           +     ++  +   +S          D   +          S      + + +   N   
Sbjct: 104 RAFGKSMTDDMAAALSAICG--AAAPDARRLPQSDAAKPLASRYGGVHVRLVLGPSNARL 161

Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
           S +   P          +  ++  +       ++    +          R+ + +  +  
Sbjct: 162 SVLFAAPFWWARHVRRDAAPTRANTLTPRTAALESIRTRV-------CARLGVVELPVAQ 214

Query: 256 VVTLKIGQVIPFLHREKTCAILSANG---KEIYSCELGRVGKNYTIRITDRINFDQ 308
           ++ L  G V+    +      L         +    LGR  +  +I++   +    
Sbjct: 215 LLDLMPGDVLVIAEQLDPVVSLVTGNTGQVPVGFGRLGRTDRQLSIQLQSLVEPKD 270


>gi|170750204|ref|YP_001756464.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656726|gb|ACB25781.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 122

 Score = 63.1 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 28/74 (37%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V++   +   +  L  ++ +  G VI     +     + AN   I   ++   G   ++
Sbjct: 29  KVDLTVVLGRARMPLHMLLRMGRGAVIELEASDSDMVEILANDHPIARGQIVVTGDRISV 88

Query: 299 RITDRINFDQKSLK 312
            +T+ I      ++
Sbjct: 89  EVTELIRKAASIVE 102


>gi|167949199|ref|ZP_02536273.1| flagellar motor switch protein FliM [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 111

 Score = 63.1 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 26/80 (32%), Gaps = 3/80 (3%)

Query: 206 LLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           +     +  +  Q+    + E        +     + + + +     TL+++  L  G +
Sbjct: 1   MEPIRELLDAGVQSDRGERDERWERSLREEILGAKIELKSILTETCVTLRELSKLDKGDI 60

Query: 265 IPFLHREKTCAILSANGKEI 284
           IP          ++A    +
Sbjct: 61  IPIELP--EEVEVTAAEVPV 78


>gi|260893866|ref|YP_003239963.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
           KC4]
 gi|260866007|gb|ACX53113.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
           KC4]
          Length = 114

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 30/76 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + + +   +     T+++++ L+ G VI           L  +G++    E+  +
Sbjct: 28  ELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAGEAVDLLLDGQKFGRGEVMVL 87

Query: 293 GKNYTIRITDRINFDQ 308
            + + +R+       +
Sbjct: 88  NERFVVRVLQVFPPQE 103


>gi|118589948|ref|ZP_01547352.1| probable flagellar motor switch protein [Stappia aggregata IAM
           12614]
 gi|118437445|gb|EAV44082.1| probable flagellar motor switch protein [Stappia aggregata IAM
           12614]
          Length = 130

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + VNI   +      + +++ L  G VIP  HR      +  NG+ I   E+  V
Sbjct: 47  DTILGIPVNIQVVLGSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVV 106

Query: 293 ---GKNYTIRITDRINFD 307
                 + + +T+ I+  
Sbjct: 107 EDDNSRFGVSLTEIISAQ 124


>gi|153003619|ref|YP_001377944.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027192|gb|ABS24960.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. Fw109-5]
          Length = 334

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 68/261 (26%), Gaps = 49/261 (18%)

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
             L +      +     LV+ L++ L G   E +       L++VE    +         
Sbjct: 74  VDLPALPGTASVEVEPALVVALVDRLAGGKGEALGATS---LTSVESAALELFALAALDG 130

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNT--------------NRLSNEFVTTINMNMTIE 191
             Q  +  +  SP L                             L    V  +      +
Sbjct: 131 ACQLAAVEETLSPRLCRATPEPSAALAVELTLTAGELSGRARLLLPAAAVRALRGAPAFD 190

Query: 192 NVASSFVLII------------------------------PQETLLKTTLISLSSQNKSE 221
             A+   L+                               P+  +L              
Sbjct: 191 GDAAGIGLVASVRGGAAALRTEELEALAAGDVVVLDGGAGPRALVLPGGARLSGRHED-- 248

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                      ++  QL V ++  +   + TL ++  L+ G ++P     +    L A  
Sbjct: 249 GTFHVEEIEMTQRMAQLPVVLEVELARVEVTLAELARLEPGGILPLALDRRGLVTLRAGE 308

Query: 282 KEIYSCELGRVGKNYTIRITD 302
           + +   EL  V     +RI D
Sbjct: 309 RAVARGELVDVDGAVGVRIID 329


>gi|209963529|ref|YP_002296444.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|209956995|gb|ACI97631.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 119

 Score = 62.7 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R  + + VN+   +      +  ++ L  G V+    +      +  N + I   E+  V
Sbjct: 40  RAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIARGEVVIV 99

Query: 293 -GKNYTIRITDRINFD 307
                 + +T+ +  +
Sbjct: 100 DDGRLGVTMTEIVKAE 115


>gi|213023115|ref|ZP_03337562.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 67

 Score = 62.7 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             L  ++ LK G V+P         I   +G  + + + G V   Y +R+   IN 
Sbjct: 3   LRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 56


>gi|330963707|gb|EGH63967.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 356

 Score = 62.7 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%)

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  L + +  ++   + TL  +  +  G ++P          L  NG+ I   +L 
Sbjct: 281 LDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGRGQLV 340

Query: 291 RVGKNYTIRI 300
            +G    +R+
Sbjct: 341 SIGDGLGVRL 350


>gi|149189861|ref|ZP_01868141.1| flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148836347|gb|EDL53304.1| flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 122

 Score = 62.7 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K+  L D+++   G +I           +  NG  +   E+  V + 
Sbjct: 45  KNIPVTVTLEVASKEVALGDLMSAGEGSIIELDKLNGEPLDVKVNGSLMGHAEVVVVNEK 104

Query: 296 YTIRITDRINF 306
           Y +R+ D ++ 
Sbjct: 105 YGLRLIDVVDS 115


>gi|330876195|gb|EGH10344.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 356

 Score = 62.7 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%)

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  L + +  ++   + TL  +  +  G ++P          L  NG+ I   +L 
Sbjct: 281 LDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGRGQLV 340

Query: 291 RVGKNYTIRI 300
            +G    +R+
Sbjct: 341 SIGDGLGVRL 350


>gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 101

 Score = 62.7 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            L +  +     Q+    +              + V +  ++     ++ ++  LK G V
Sbjct: 9   ELEEARVAVNDGQSPLIKRD-------MNLIKHVVVELVVQLGHASMSVDELFALKAGDV 61

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           +  L +    A L  +GK +    L  V  N+ I++T+ +
Sbjct: 62  VKLLEQVHEPASLCLDGKPVARGNLVAVDDNFGIQLTEIL 101


>gi|222147562|ref|YP_002548519.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
 gi|221734550|gb|ACM35513.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
          Length = 220

 Score = 62.7 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 7/78 (8%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +   +  +  ++ L+ G +I    +      +  NG+ I   E+  +
Sbjct: 141 DLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVEIMVNGRRIARGEITVL 200

Query: 293 GK---NYTIRITDRINFD 307
                 + +++ + ++  
Sbjct: 201 ENDDTRFGVKLIEVMSTK 218


>gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis
           Ellin345]
          Length = 252

 Score = 62.7 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/269 (8%), Positives = 59/269 (21%), Gaps = 28/269 (10%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
                 +   +    +                           E+   + +     S  F
Sbjct: 5   EHFFEQWAGAICDTLRPITGKPWTSRVNKADELGAGD-----TESIFLTFSVSEPLSGMF 59

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
               S +  + L   L   S  +            +++       Q +      +     
Sbjct: 60  RSALSRSAALQL-NFLFTGSESSEWNTE-------QQETIDELSRQFAGQFAAALKPELG 111

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
                             +        +    + +  V            L       L 
Sbjct: 112 ----EVHLELQKDAPFTGSGDGYRLALSQADGIELFAV----------LELDDALRKKLQ 157

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNI-DTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
               + +     +                 R   ++  L+D++ L+ G V+      +  
Sbjct: 158 PDPAAVSADNHSVQSTNLDLLLDVELDVTLRFGQREMLLQDILELQSGSVVELDREIQDP 217

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR 303
             L  +G+ I    +  V  NY +R+ + 
Sbjct: 218 VELLLDGRVIARGSVVVVDGNYGLRVAEV 246


>gi|256158145|ref|ZP_05456061.1| Flagellar motor switch FliN protein [Brucella ceti M490/95/1]
 gi|256252904|ref|ZP_05458440.1| Flagellar motor switch FliN protein [Brucella ceti B1/94]
 gi|261219992|ref|ZP_05934273.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
 gi|265996663|ref|ZP_06109220.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
 gi|260918576|gb|EEX85229.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
 gi|262550960|gb|EEZ07121.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
          Length = 98

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           ++     + +    P       + V++   +      +  ++ L  G VI    +     
Sbjct: 5   ARKSHAARKKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPV 64

Query: 276 ILSANGKEIYSCELGRVGK---NYTIRITDRINF 306
            +  NG+ I   E+  +      + + +T+ I  
Sbjct: 65  DIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 98


>gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
 gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
 gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
 gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
          Length = 95

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 30/80 (37%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            +          + +D  +     ++ + + L  G +I       +   +  N + I + 
Sbjct: 4   SERVYDLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRIIGTG 63

Query: 288 ELGRVGKNYTIRITDRINFD 307
           ++  + +   +R+ D ++ D
Sbjct: 64  DIIVIDEKLAVRVQDAMDSD 83


>gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 123

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIIFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|1399288|gb|AAB03253.1| FliM [Treponema phagedenis]
          Length = 110

 Score = 62.3 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 6/63 (9%), Positives = 17/63 (26%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   +  S +   + +        ++   V +   S     +   I S       +  +
Sbjct: 48  SKEQMRTLSLMHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPTTIAVIN 107

Query: 88  LSS 90
           +  
Sbjct: 108 MDP 110


>gi|331005447|ref|ZP_08328826.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
 gi|330420723|gb|EGG95010.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
          Length = 104

 Score = 62.3 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 29/69 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L + +   +   +  +  ++T+K G V+       +   +  NGK +    +  V  
Sbjct: 34  LKDLKIKMQVSLGETEIQVDKLMTMKEGSVVKLDREANSPLDIFINGKLVARGVMVVVDD 93

Query: 295 NYTIRITDR 303
           ++ ++IT+ 
Sbjct: 94  DFGVQITEI 102


>gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 78

 Score = 62.3 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 26/77 (33%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + V +   +      +  ++ +  G VI    R+     + AN   I   E+  
Sbjct: 1   MNSVNNVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIV 60

Query: 292 VGKNYTIRITDRINFDQ 308
            G+   + IT  +   +
Sbjct: 61  QGERVAVSITTVLAGGE 77


>gi|260767961|ref|ZP_05876895.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|260615991|gb|EEX41176.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|315179665|gb|ADT86579.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           furnissii NCTC 11218]
          Length = 122

 Score = 62.3 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + V +   +  K   L +++    G VI           +  NG  +   E+  V   
Sbjct: 45  RNIPVTVTLEVASKAIALGELMKAGEGSVIELDKLNGEPLDVKVNGALLGHAEVVVVNDK 104

Query: 296 YTIRITDRINF 306
           Y +R+ D ++ 
Sbjct: 105 YGLRLIDVLDS 115


>gi|86356303|ref|YP_468195.1| flagellar motor switch protein [Rhizobium etli CFN 42]
 gi|86280405|gb|ABC89468.1| flagellar motor switch protein [Rhizobium etli CFN 42]
          Length = 214

 Score = 62.3 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  +
Sbjct: 135 ELIMDIPIDVQIMLGTSRMQVSSLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 194

Query: 293 GK---NYTIRITDRINFDQ 308
                 + +++ + ++  +
Sbjct: 195 DNDDTRFGVKLIEVLSTKK 213


>gi|22127343|ref|NP_670766.1| flagellar switch protein [Yersinia pestis KIM 10]
 gi|45442781|ref|NP_994320.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597652|ref|YP_071843.1| flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
 gi|108809074|ref|YP_652990.1| flagellar switch protein [Yersinia pestis Antiqua]
 gi|108810733|ref|YP_646500.1| flagellar switch protein [Yersinia pestis Nepal516]
 gi|145597802|ref|YP_001161878.1| flagellar switch protein [Yersinia pestis Pestoides F]
 gi|150260264|ref|ZP_01916992.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
           CA88-4125]
 gi|165925127|ref|ZP_02220959.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939068|ref|ZP_02227620.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008730|ref|ZP_02229628.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212179|ref|ZP_02238214.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399118|ref|ZP_02304642.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419195|ref|ZP_02310948.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425214|ref|ZP_02316967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466356|ref|ZP_02331060.1| flagellar switch protein [Yersinia pestis FV-1]
 gi|170022956|ref|YP_001719461.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186896786|ref|YP_001873898.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927897|ref|YP_002345772.1| flagellar switch protein [Yersinia pestis CO92]
 gi|229837393|ref|ZP_04457556.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
 gi|229840606|ref|ZP_04460765.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842843|ref|ZP_04462995.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900930|ref|ZP_04516054.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
 gi|270487689|ref|ZP_06204763.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|294502774|ref|YP_003566836.1| flagellar switch protein [Yersinia pestis Z176003]
 gi|21960426|gb|AAM87017.1|AE013950_2 hypothetical [Yersinia pestis KIM 10]
 gi|45437647|gb|AAS63197.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590934|emb|CAH22590.1| Flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
 gi|108774381|gb|ABG16900.1| flagellar switch protein [Yersinia pestis Nepal516]
 gi|108780987|gb|ABG15045.1| flagellar switch protein [Yersinia pestis Antiqua]
 gi|115346508|emb|CAL19384.1| flagellar switch protein [Yersinia pestis CO92]
 gi|145209498|gb|ABP38905.1| flagellar switch protein [Yersinia pestis Pestoides F]
 gi|149289672|gb|EDM39749.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
           CA88-4125]
 gi|165913024|gb|EDR31649.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923327|gb|EDR40478.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992069|gb|EDR44370.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206925|gb|EDR51405.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963189|gb|EDR59210.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051622|gb|EDR63030.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055977|gb|EDR65758.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749490|gb|ACA67008.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186699812|gb|ACC90441.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682269|gb|EEO78361.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
 gi|229690110|gb|EEO82167.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696972|gb|EEO87019.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705516|gb|EEO91526.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
 gi|262360806|gb|ACY57527.1| flagellar switch protein [Yersinia pestis D106004]
 gi|262364751|gb|ACY61308.1| flagellar switch protein [Yersinia pestis D182038]
 gi|270336193|gb|EFA46970.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|294353233|gb|ADE63574.1| flagellar switch protein [Yersinia pestis Z176003]
 gi|320016726|gb|ADW00298.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 137

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 28/85 (32%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +      D          ++ V +   +   +  L +++T+    VI           + 
Sbjct: 43  EKTATKTDEQKRKMSLFSRIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIR 102

Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303
            NG      E+  + + Y +RI + 
Sbjct: 103 VNGIMFGQAEVVVINEKYGLRIINI 127


>gi|326403666|ref|YP_004283748.1| flagellar motor switch protein FliN [Acidiphilium multivorum
           AIU301]
 gi|325050528|dbj|BAJ80866.1| flagellar motor switch protein FliN [Acidiphilium multivorum
           AIU301]
          Length = 106

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 3/104 (2%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           L    +S  +            D      Y + V +   +      +  ++ L  G V+ 
Sbjct: 4   LPLAPVSRRTAGDGPETQRPSRDL--EAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVE 61

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGK-NYTIRITDRINFDQK 309
              +      +  N + I   E+  + +    I +T+ +  D+ 
Sbjct: 62  LDRKAGDPIDIFVNNRLIARGEVVMLDETKLGITMTEIVKSDRN 105


>gi|327478783|gb|AEA82093.1| flagellar motor switch protein FliN [Pseudomonas stutzeri DSM 4166]
          Length = 123

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ VN+   +   + +LK+++      VI           +  NG      E+  +  NY
Sbjct: 47  KIPVNVTLEVASAEISLKELMECDTSSVIVLDKLAGEPLDVKVNGTLFAKAEVVVMNGNY 106

Query: 297 TIRITD 302
            +RI +
Sbjct: 107 GLRIVE 112


>gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces
           limnophilus DSM 3776]
 gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces
           limnophilus DSM 3776]
          Length = 396

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 54/155 (34%), Gaps = 5/155 (3%)

Query: 155 ESSPNLEDFYDIDY-LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
           E      +             +L +       ++  ++++ S++  +  Q+ +     ++
Sbjct: 238 EWEEASANLETERRQNSSAERQLPDSQTAVAPVDSPVDDLLSNYEGLAAQDPMESAAPLA 297

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
             +  +             ++   + V +  R+  K+  L  ++ L  G ++ F    + 
Sbjct: 298 QETMPQQSVT----SQLMLQRLSGVRVQLSVRLAEKRMPLAALLQLSPGALVTFSKPCED 353

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              +    ++    E  ++G+++ +++       +
Sbjct: 354 LLDIYIGNRQYAQGEAVKIGEHFGVKVNRLGPPPE 388


>gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           sp. 4-46]
 gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           sp. 4-46]
          Length = 101

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +L V++   +   +  +  ++ +  G VI     +     + AN   I   ++   G 
Sbjct: 4   LEELKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVVTGN 63

Query: 295 NYTIRITDRINFDQ 308
             ++ +T+ I    
Sbjct: 64  RISVEVTELIRKAD 77


>gi|296534812|ref|ZP_06897160.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
 gi|296264860|gb|EFH11137.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
          Length = 110

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              Y + V +   +      +  ++ L  G V+    +      +  N + +   E+  V
Sbjct: 32  NAVYDIPVQVSAVLGRATMQVSQLLKLGRGAVVELDRKLGEAVDIYVNNRLVARGEVVMV 91

Query: 293 GKNY-TIRITDRINFDQ 308
           G+N   + +T+ +  D+
Sbjct: 92  GENRLGVTMTEIVKTDR 108


>gi|153949693|ref|YP_001399619.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|152961188|gb|ABS48649.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
          Length = 137

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 28/85 (32%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +      D          ++ V +   +   +  L +++T+    VI           + 
Sbjct: 43  EKTATKTDEQKRKMSLFSRIPVTLTLEVASVELPLSELLTVNNDSVIELDKLAGEPLDIR 102

Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303
            NG      E+  + + Y +RI + 
Sbjct: 103 VNGIMFGQAEVVVINEKYGLRIINI 127


>gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
           11218]
          Length = 128

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 31/73 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   ++ ++  LK++++++   VI    +E     +  NG    +  +     
Sbjct: 53  IRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNIIIQDG 112

Query: 295 NYTIRITDRINFD 307
            Y +++   +N +
Sbjct: 113 KYGVQVLALVNNE 125


>gi|197121157|ref|YP_002133108.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. K]
 gi|196171006|gb|ACG71979.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. K]
          Length = 324

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 66/268 (24%), Gaps = 46/268 (17%)

Query: 75  HSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS------- 126
            ++    V      L +      +     LV+ +++ + G      P             
Sbjct: 54  RAWPRPAVARIALDLPALPGTAILEVEPALVVRVVDRMAGGDGAPAPAASLTPVEATALE 113

Query: 127 ------------LSTVEKKLAKRTIAQISAVLNQCISTTQESS----------------- 157
                       ++ +E++L+ R      A      +   E                   
Sbjct: 114 LLALAALDGACGVAELEERLSPRLAR---ADAEPAGALAVELEVTAGPARGRARLLLPPA 170

Query: 158 --PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI--- 212
               L    ++D        +           +         +++ P        ++   
Sbjct: 171 AVRALRGPAELDRQLPVPGSVRRGRAALTAAELDALE-PGDVLVVDPPADGRDALVLPGG 229

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
             +                A +  QL V ++  +      L +V  L+ G V+      +
Sbjct: 230 LRALGRIDGEGFHVEETEMAERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRR 289

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300
               L    + +   EL  V     +RI
Sbjct: 290 GLVTLRLGERAVARGELVDVEGAVGVRI 317


>gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
 gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
          Length = 321

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 17/195 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
                     L+   LE   G +     +     +ST E+++  R    +S +  + I  
Sbjct: 124 GKVGFAIDRALLTEALECYYGGTCLPNHEAP--PVSTSEQRMRTRLGLDVSQLFARSILA 181

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
            Q            +           E+V   +    I    +S  + +  + + + T  
Sbjct: 182 GQTFGKLEPYDNAYEEATW-------EYVAEFHFTSHITGSQASIFIYLDTQLVDELTNR 234

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
                  +++ +         +  QL V +D  +   +  L  V+ L+ G ++P      
Sbjct: 235 LTPPAPVAQSGNSL------NQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPMRLL-- 286

Query: 273 TCAILSANGKEIYSC 287
               +  N ++++  
Sbjct: 287 ERCDVQINQQKLFRG 301


>gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 80

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                ++++I   I  K  TL  ++ LK G +I F  + +    +  NG++    EL  V
Sbjct: 9   EDFKDVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKFGIGELVIV 68

Query: 293 GKNYTIRITDRI 304
              Y++R+ D +
Sbjct: 69  NDKYSLRLVDLV 80


>gi|120597291|ref|YP_961865.1| hypothetical protein Sputw3181_0460 [Shewanella sp. W3-18-1]
 gi|146294564|ref|YP_001184988.1| hypothetical protein Sputcn32_3479 [Shewanella putrefaciens CN-32]
 gi|120557384|gb|ABM23311.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
 gi|145566254|gb|ABP77189.1| conserved hypothetical protein [Shewanella putrefaciens CN-32]
          Length = 293

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 60/211 (28%), Gaps = 19/211 (9%)

Query: 99  CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
                +  L  N  G S  T      R  S  E +LA++ +  +   L      T     
Sbjct: 98  IDRCTLDQLASNYYG-SMSTPLNSPLRDPSQSEFRLARKLLLSVVDKLPNNTIDTSALEV 156

Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
            L        +               + N + E+     +  +      +  L  L+ Q 
Sbjct: 157 ELIKGQMELAVS-----------AVWSFNFSQESQTPPMLFCLT-----EHLLGHLAEQP 200

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           K    S DL    A     L V I   +      +  +  L  G ++P     KT   + 
Sbjct: 201 KKSEVSADLPAKLAIWLKNLPVKIQVTLGQHNIPVHSLGQLNTGDILPINLYPKTLLSI- 259

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                ++   +         ++T  +   ++
Sbjct: 260 -GSTPLFHATVHSHEGLMVAKLTQDVYQYEE 289


>gi|220926099|ref|YP_002501401.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           nodulans ORS 2060]
 gi|219950706|gb|ACL61098.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           nodulans ORS 2060]
          Length = 101

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V++   +   +  +  ++ +  G VI     +     + AN   I   ++   G 
Sbjct: 4   LEDLKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDTDMVEILANDHPIARGQIVVTGN 63

Query: 295 NYTIRITDRINFDQ 308
             ++ +T+ I   +
Sbjct: 64  RISVEVTELIRKAE 77


>gi|163758005|ref|ZP_02165093.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
 gi|162284294|gb|EDQ34577.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
          Length = 241

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++   +   +  +  ++ L  G  I    +      +  NGK I   E+  +
Sbjct: 159 DLVMGIPVDVQIILGSSRMAVSSLMELSEGATIALDRKIGEPVEIMVNGKMIGRGEITVL 218

Query: 293 GK---NYTIRITDRINFDQ 308
                 + +RI + I   Q
Sbjct: 219 DSDDTKFAVRIIEVIGAPQ 237


>gi|260779321|ref|ZP_05888213.1| putative flagellar motor switch protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605485|gb|EEX31780.1| putative flagellar motor switch protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 271

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 85/266 (31%), Gaps = 44/266 (16%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L    K     + +I+  S  +   S +     +    S           FI   +  +I
Sbjct: 46  LQNWLKTH-HAEANINLVSLHTFTPSEM-----DKSFISTFRHDG-GGRVFIHTDSQTLI 98

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDF 163
            L ++      +   +  + SL+  + +L ++    I   L   +  S   E  P     
Sbjct: 99  KLADSFY----DAKMERSHTSLNNSDLRLQEKIGRLIINWLAPEEMWSD-CEFEP----- 148

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
                        +        +++ + +   +  +       L   L++  ++      
Sbjct: 149 -------------AQGTGLYATIDVNLNDHQGTIHV------KLDELLVATLTEQLDLQP 189

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
            E + +PF +      V ++  ++ K   L ++++L+   V+P          +    + 
Sbjct: 190 KESMYEPFCQSLASTPVKLNVLLSKKTMPLSELISLQPNDVLPIELLSSAPVSI--GQEH 247

Query: 284 IYSCELGRVGKNYTIRITDRINFDQK 309
           ++S  +        +     +N D++
Sbjct: 248 LFSGRVAENDGQLVL----ILNQDKE 269


>gi|294678996|ref|YP_003579611.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
           1003]
 gi|294477816|gb|ADE87204.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
           1003]
          Length = 90

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GR 291
            Q+ + I   +   +  ++D++ +K   ++P   R +    L    K I   EL    G 
Sbjct: 12  SQVPIEITISVGKARPLVRDLLRMKRDSILPLDRRVEDPVELYVGDKLIARGELTEMEGD 71

Query: 292 VGKNYTIRITDRIN 305
                 +R+T+ ++
Sbjct: 72  SNGQLAVRLTEVVD 85


>gi|170698146|ref|ZP_02889225.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria IOP40-10]
 gi|170136911|gb|EDT05160.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria IOP40-10]
          Length = 309

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 3/125 (2%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
           + V    ++  +        L         T  +   +     +    ++D  A +   L
Sbjct: 182 DAVLIETISPEM--RVGEQQLCE-ISIEGNTMTMHEQASEMRGDSQPGMMDGQAFQVDAL 238

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V ++     ++ T+ DV  L  G V+P     +    + ANG+ +   EL +VG+   +
Sbjct: 239 PVKLEFAFRQRELTVADVARLHPGAVLPLDAGAEHEVKIYANGRYLALGELIQVGERLAV 298

Query: 299 RITDR 303
            I   
Sbjct: 299 EIQSI 303


>gi|220915858|ref|YP_002491162.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953712|gb|ACL64096.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 324

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 69/265 (26%), Gaps = 40/265 (15%)

Query: 75  HSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS------- 126
            ++    V      L +      +     LV+ +++ + G      P             
Sbjct: 54  RAWPRPAVARIALDLPALPGTAILEVEPALVVRVVDRMAGGDGAPAPAASLTPVEVTALE 113

Query: 127 ------------LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN 174
                       ++ +E++L+ R     +      ++   E +           L     
Sbjct: 114 LLALAALDGACGVAELEERLSPRLARADAEP-AGALAVELEVTAGPARGRARLLLPPAAV 172

Query: 175 RL---SNEFVTTINM--NMTIENV-----------ASSFVLIIPQETLLKTTLI---SLS 215
           R      E    + M  ++                    +++ P        ++     +
Sbjct: 173 RALRGPAELDRQLPMPGSVRRGRAALTAAELDALEPGDVLVVDPPADGRDALVLPGGLRA 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
                           A +  QL V ++  +      L +V  L+ G V+      +   
Sbjct: 233 LGRIDGEGFHVEETEMAERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLV 292

Query: 276 ILSANGKEIYSCELGRVGKNYTIRI 300
            L    + I   EL  V     +RI
Sbjct: 293 TLRLGERAIARGELVDVEGAVGVRI 317


>gi|237800782|ref|ZP_04589243.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023640|gb|EGI03697.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 353

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%)

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  L + +  ++   + TL  +  +  G ++P          L  NG+ +   EL 
Sbjct: 278 LDTSLDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLAHDEVDLMVNGRRVGRGELV 337

Query: 291 RVGKNYTIRI 300
            +G    +R+
Sbjct: 338 TIGDGLGVRL 347


>gi|162419818|ref|YP_001604860.1| flagellar switch protein [Yersinia pestis Angola]
 gi|162352633|gb|ABX86581.1| flagellar motor switch protein FliN [Yersinia pestis Angola]
          Length = 137

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 28/85 (32%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +      D          ++ V +   +   +  L +++T+    VI           + 
Sbjct: 43  EKTATKTDEQKRKMSLFSRIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIQ 102

Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303
            NG      E+  + + Y +RI + 
Sbjct: 103 VNGIMFGQAEVVVINEKYGLRIINI 127


>gi|149177723|ref|ZP_01856323.1| probable flagellar motor switch protein fliN [Planctomyces maris
           DSM 8797]
 gi|148843373|gb|EDL57736.1| probable flagellar motor switch protein fliN [Planctomyces maris
           DSM 8797]
          Length = 295

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 85/287 (29%), Gaps = 43/287 (14%)

Query: 45  FLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
            L   F +  D    +            +  +F+   + +   +   +    I  S  L 
Sbjct: 22  ALADSFNQCFDYQYRLEMGESGVWSPEELEEAFQGPGLVTLVRIGGEAMVGLIPASLPL- 80

Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
                       +   +  +   S ++    + ++  I   L        E      D  
Sbjct: 81  -----------PDWYSEPGDSQTSRLQTLALEWSMNLIPMDL----GDVDEFKTYFVDSL 125

Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASS-------FVLIIPQE---TLLKTTLISL 214
             +     T    +E+   + +++      S          +I P             + 
Sbjct: 126 LSE----VTACAPSEWAALMRIHLFSSEEESDGQSPSAVIPVIWPLTKPPVTESVEPEAD 181

Query: 215 SSQNKSENQSEDLIDPFAR------------KTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            +   S + +        +            +  +L V    ++  KK  +  ++++  G
Sbjct: 182 PAPQPSPSSTPQATPQMVQATPANSNRNPLNRISKLPVQAIVKLASKKIEMNQLLSICPG 241

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +I F    +    L  N +     E  ++G+++ ++I DR+ F ++
Sbjct: 242 SLITFDKPCEDPLELYINNQVYCLGEAVKIGEHFGLKI-DRVGFKEE 287


>gi|283834474|ref|ZP_06354215.1| flagellar motor switch protein [Citrobacter youngae ATCC 29220]
 gi|291070021|gb|EFE08130.1| flagellar motor switch protein [Citrobacter youngae ATCC 29220]
          Length = 287

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 61/208 (29%), Gaps = 14/208 (6%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +        L++ LL N  G +     +     L +  E +L  R    IS ++     
Sbjct: 76  GHLAFDIDRALLLMLLGNFYGLTSSLADEKSQDDLPTKTETRLRSRLALDISNIIFN--K 133

Query: 152 TTQESSPNLEDFYDIDYLK---KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                   L+            + T  L +E   +  + +   +      LI       +
Sbjct: 134 NISGIPLTLKPDSSTVQTHWAYQLTFVLGDEENCSFRILLDDSHTDYILNLI------RR 187

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           +       Q    +             + L + ++ +I      + D+ T+K G ++P  
Sbjct: 188 SEHGEKKKQIDKASAEARKKTLIKEIIHTLPLTMNVKIAEIPLNVADLTTIKPGDILPIA 247

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             +     +     E+++  +       
Sbjct: 248 MPDTFP--VYIGKSELFNALIVEDKDKL 273


>gi|115379115|ref|ZP_01466239.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363898|gb|EAU63009.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 342

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 72/262 (27%), Gaps = 30/262 (11%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
           ++   S+     + L         +   +   +               + VF    LS+ 
Sbjct: 3   QQALQSICESLGRELGCDVSAASHVAEAVVVPA----------KGLSLSAVFVFLELSAT 52

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
             +  +     ++   LE L G      P      L+ +E+      +            
Sbjct: 53  GGSAVLELEPPVLFAALERLAGGPARPGPMT---RLTRLEEASLAYLVLAALMAFRTQGE 109

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
             +   P L     ++ +         +    + + +++    +   L++P   L  T  
Sbjct: 110 LQRWWGPRLAGM-TVNRMDALARLDGRKAHLGVELVLSVGQRTAGARLVLPAVVLESTCR 168

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                ++ S             +    ++     +  ++    ++ TL +G V+ F    
Sbjct: 169 KLPVQRDSSRAP----------EILAASLGARCFLGCRQLLPSELETLAVGDVVVF---- 214

Query: 272 KTCAILSANGKEIYSCELGRVG 293
                L+  G       L   G
Sbjct: 215 -EGVRLT-GGAPRGPGRLVTRG 234



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V ++  +      L ++ TL+ GQ++P         +L    + +   EL  +      
Sbjct: 276 PVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELVDIDGEIGA 335

Query: 299 RITDRIN 305
           RI   + 
Sbjct: 336 RILSLLP 342


>gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 95

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                  + +D  +     T+KD + L  G ++           +  N + I + ++  +
Sbjct: 9   DLLVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRIIGTGDIIVI 68

Query: 293 GKNYTIRITDRINFD 307
            +   +R+ D ++ D
Sbjct: 69  DEKLAVRVQDAMDSD 83


>gi|89068715|ref|ZP_01156101.1| Flagellar motor switch protein FliN [Oceanicola granulosus
           HTCC2516]
 gi|89045678|gb|EAR51740.1| Flagellar motor switch protein FliN [Oceanicola granulosus
           HTCC2516]
          Length = 132

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           ++P+    +   +  +   +  N               + + ++  +   +  +  ++ L
Sbjct: 23  LLPELEAPEEQTVLENMVGEQVNGDGGRS---IEAMLNVGLEVNIVLGRSRMPISQLLKL 79

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY-TIRITDRIN 305
             G +I    R      +  + + +   +L RVG N   + +T+ + 
Sbjct: 80  SRGSIIELDKRIGEPVDMIVSDRLVARGDLVRVGDNRVGVTLTEIVK 126


>gi|323143898|ref|ZP_08078560.1| putative type III secretion apparatus protein, YscQ/HrcQ family
           [Succinatimonas hippei YIT 12066]
 gi|322416325|gb|EFY06997.1| putative type III secretion apparatus protein, YscQ/HrcQ family
           [Succinatimonas hippei YIT 12066]
          Length = 315

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 1/92 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +  S Q           +        + + I+  +   K  L  +  L  G V+   +  
Sbjct: 225 LLSSLQKTDSGDDMADSEELTT-IEDVELTINFSLESIKLPLSSIKELTEGSVLDLNNSA 283

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                +   GK I    +  VG    ++IT  
Sbjct: 284 LENIAVKLEGKTIGYGRIIEVGGKNALQITRI 315


>gi|226326426|ref|ZP_03801944.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198]
 gi|225205209|gb|EEG87563.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198]
          Length = 313

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + V +   +  K   ++ +  L  G  I          I+  NG  + S EL ++
Sbjct: 238 QSINSIPVTVSFLLASKTLLIEQIEALAPGDKIELPENAYQHIIIKVNGISVASGELVKI 297

Query: 293 GKNYTIRITDRINFDQ 308
           G N+ + I    +  +
Sbjct: 298 GDNFAVEIQRSFSAQE 313


>gi|331005464|ref|ZP_08328843.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989]
 gi|330420740|gb|EGG95027.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989]
          Length = 255

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 16/185 (8%)

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  +   T   KL  R + +    L          +   ++       +    ++SN 
Sbjct: 86  SKIAPKIEPTYNSKLFNRLVEECLKSLQ-----VNLINDFFDENNTSKNPQNLEKQVSNL 140

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
            + T+  N           L I   + L       S   +     +  +           
Sbjct: 141 TIVTLKNN--------EISLKIFFSSFL--IDHIASEYIQKNKAKKGNLYSIKNSLANEK 190

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTI 298
           ++          T+ +++++K G VI    +          +G++++   LG    N+ I
Sbjct: 191 ISFSVEYGNASLTVDEIMSIKTGDVIRLTKKIGDSVSAHNLSGEKLFDGSLGVNDNNFAI 250

Query: 299 RITDR 303
           ++T +
Sbjct: 251 KVTGK 255


>gi|307946346|ref|ZP_07661681.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4]
 gi|307770010|gb|EFO29236.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4]
          Length = 88

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 30/79 (37%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + V+I   +   +  +  ++ +  G VI     E     + AN   + + ++  
Sbjct: 1   MTTLDDIFVDISVVLGKSEMPIHQLLRMGRGAVIDLDVSEDDDVEIYANKTLVATGQVVL 60

Query: 292 VGKNYTIRITDRINFDQKS 310
           +G+   I +T+ +    + 
Sbjct: 61  LGERIGISVTEVLRRGPEI 79


>gi|190890354|ref|YP_001976896.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
 gi|190695633|gb|ACE89718.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
          Length = 195

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  +
Sbjct: 116 ELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175

Query: 293 GK---NYTIRITDRINFDQ 308
                 + +++ + ++  +
Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194


>gi|315126004|ref|YP_004068007.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
 gi|315014518|gb|ADT67856.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
          Length = 110

 Score = 60.4 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + + +   +   + TL ++   K G V+           +  NG      E+  V   
Sbjct: 37  QDVPLLVTLEVASTEITLGELSQAKEGDVLKLDKVAGEALDVKVNGVFFAKAEVVMVEGQ 96

Query: 296 YTIR 299
           Y ++
Sbjct: 97  YGLK 100


>gi|83944188|ref|ZP_00956644.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
           EE-36]
 gi|83845055|gb|EAP82936.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
           EE-36]
          Length = 114

 Score = 60.4 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + +++   +   +  + +++ L  G VI    R      +  N + +   +L RV
Sbjct: 35  DAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLVRV 94

Query: 293 -GKNYTIRITDRINFDQKSLKNF 314
            G +  + + + +   +  + + 
Sbjct: 95  QGDSLGVALREIV---KDFVSDI 114


>gi|254418697|ref|ZP_05032421.1| Surface presentation of antigens protein, putative [Brevundimonas
           sp. BAL3]
 gi|196184874|gb|EDX79850.1| Surface presentation of antigens protein, putative [Brevundimonas
           sp. BAL3]
          Length = 83

 Score = 60.4 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +   ++V I   +      +  ++ +  G VIP    E     + AN   +   E+  
Sbjct: 1   MSQINAVDVEISVVLGRMVLPMSQLLRMGRGAVIPLDASEGDEVWILANNHPVARGEIEI 60

Query: 292 VGKNYTIRITD 302
                 I +T 
Sbjct: 61  RDDRIAITVTR 71


>gi|218508216|ref|ZP_03506094.1| flagellar motor switch protein [Rhizobium etli Brasil 5]
          Length = 195

 Score = 60.4 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  +
Sbjct: 116 ELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175

Query: 293 GK---NYTIRITDRINFDQ 308
                 + +++ + ++  +
Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194


>gi|54124953|gb|AAV30221.1| AscQ [Aeromonas hydrophila]
          Length = 308

 Score = 60.4 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 60/239 (25%), Gaps = 21/239 (8%)

Query: 88  LSSWSSNFFIGCSNNLVITLLENL---LGAS--HETIPQLYNRSLSTVEKKLAKRTIAQI 142
                    +    +L + L+E L   LG                +    +L  +     
Sbjct: 72  APDLQQAALLSLPESLRLALIERLGQPLGGLTCSALAAHAIGEETAEPALQLLLKREGAT 131

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN-MTIENV-------- 193
            A+            P       +      + +     V   ++  +   +V        
Sbjct: 132 LALWLAEPGPLLGKLPPRPIQQRLPLPLALSLQWGAMRVAIADLETLACGDVLLPPPSPL 191

Query: 194 -ASSFVLII---PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
                ++ +   P             +   +    + L      +   L V +   +  +
Sbjct: 192 LGQQLLVCVEGRPFAYCQPHPQHLELTAMHNAAPDDALDPS---QLEGLPVQVTFEVGRQ 248

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                 + TL+ G +I           + +NG  + +  L  +     +R+    +  Q
Sbjct: 249 TLDWHTLTTLQPGSLIDLGAPIDGEVRIISNGHLLGNGRLVEIQGRLGVRVESLKSESQ 307


>gi|296447444|ref|ZP_06889369.1| flagellar motor switch protein FliN [Methylosinus trichosporium
           OB3b]
 gi|296255064|gb|EFH02166.1| flagellar motor switch protein FliN [Methylosinus trichosporium
           OB3b]
          Length = 123

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                 L+S+        D          ++ V +   +      + +++ L  G ++P 
Sbjct: 17  PRIDAGLASEEPRAGMDVDSRKL--ESILRIPVVMQVIVGSVTMPVSNLMKLGRGAIVPL 74

Query: 268 LHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDRINF 306
             +      +  NG+ I   E+  V      + + +T+ I  
Sbjct: 75  DQKIGEPVDVVVNGRLIARGEVVVVEDDNTRFGVSLTEIIEP 116


>gi|325107429|ref|YP_004268497.1| surface presentation of antigens (SPOA) protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967697|gb|ADY58475.1| surface presentation of antigens (SPOA) protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 295

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           AR+   LNV +  R+   K  L  ++ L  G ++ F         L  N +     E  +
Sbjct: 211 ARRLMNLNVKVSVRLAEMKIELSTLINLCPGTLLVFPKSCDDLLDLYVNNRLYAQGEAVK 270

Query: 292 VGKNYTIRITDR 303
           +G+ + +++ + 
Sbjct: 271 IGEKFGLKVNEI 282


>gi|153949575|ref|YP_001399620.1| lateral flagellar export/assembly protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152961070|gb|ABS48531.1| lateral flagellar export/assembly protein [Yersinia
           pseudotuberculosis IP 31758]
          Length = 292

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 67/207 (32%), Gaps = 17/207 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNR--SLSTVEKKLAKRTIAQISAVLNQCI 150
            N        L++ +L +  G S E       +   L+  E++L  +   +I+ +     
Sbjct: 85  GNIAFDIDRLLLLNILNDYYGLSQEKKTTTTEKLSPLTKTEERLKNKLGLEITDLF---- 140

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                 +      + I             +   I+  +   + +  F + I    + +  
Sbjct: 141 -----LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYHKSG-FSIFIDAPHIDRFI 192

Query: 211 LISLSSQNKSENQSEDLI-DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
               +   KS  ++  L          +L V + ++++    TL +++ LK G +I    
Sbjct: 193 NTIKTKSEKSVEKNVSLSEKQLEHLVKKLPVTLTSQLSNINLTLAELMALKEGDIISASL 252

Query: 270 REKTCAILSANGKEIYSCELGRVGKNY 296
            E     +    + ++S  +       
Sbjct: 253 PEYFP--VFIGKEALFSAAITENRGKL 277


>gi|83955111|ref|ZP_00963767.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
 gi|83840440|gb|EAP79613.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
          Length = 114

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              + + +++   +   +  + +++ L  G VI    R      +  N + +   +L RV
Sbjct: 35  DAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLVRV 94

Query: 293 -GKNYTIRITDRINFDQKSLKNF 314
            G +  + + + +   +  +   
Sbjct: 95  QGDSLGVALREIV---KDFVSEI 114


>gi|153011535|ref|YP_001372749.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
           49188]
 gi|151563423|gb|ABS16920.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
           49188]
          Length = 115

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++   +      + +++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 39  ELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I  
Sbjct: 99  EDDSSRFGVSLTEIIGK 115


>gi|10955563|ref|NP_052404.1| type III secretion system protein [Yersinia enterocolitica]
 gi|28373030|ref|NP_783678.1| type III secretion system protein [Yersinia enterocolitica]
 gi|32470291|ref|NP_863526.1| type III secretion system protein [Yersinia enterocolitica]
 gi|122815815|ref|YP_001004081.1| type III secretion system protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163585|ref|YP_004424927.1| type III secretion system protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|14579349|gb|AAK69226.1|AF336309_21 YscQ [Yersinia enterocolitica]
 gi|4324350|gb|AAD16827.1| YscQ [Yersinia enterocolitica W22703]
 gi|23630602|gb|AAN37558.1| YscQ [Yersinia enterocolitica]
 gi|121663689|emb|CAL10051.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|310923234|emb|CBW54700.1| YscQ, T3SS component [Yersinia enterocolitica (type O:8)]
 gi|325667815|gb|ADZ44458.1| type III secretion system protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 307

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
               S    E    P      QL V +   +  +      + +L+ G +I          
Sbjct: 215 FIGMSHESDELNPKPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
            L ANG+ +    L  +     +RI  
Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300


>gi|260466629|ref|ZP_05812817.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
           WSM2075]
 gi|259029635|gb|EEW30923.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
           WSM2075]
          Length = 128

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 39/108 (36%), Gaps = 3/108 (2%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
             + +   +    + + +          +     + V++   +   +  + D++ L+ G 
Sbjct: 19  RAIEELRGVLHEEEQRPDAAFRAAAGANSSVIMNIPVDVQIILGSTEMAVSDLMALQKGS 78

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVG---KNYTIRITDRINFDQ 308
            +    R      +  NG++I   E+  +      + IR+T+ I   +
Sbjct: 79  TVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEIIAGTK 126


>gi|168699680|ref|ZP_02731957.1| hypothetical protein GobsU_09164 [Gemmata obscuriglobus UQM 2246]
          Length = 117

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + I  R+      + +++TL  G V+           L+  G      E+  V
Sbjct: 37  ESLRDVPITITARLGRAVLPIGEILTLGPGSVVELEEVISAPVELTVRGVPFAVGEVVVV 96

Query: 293 GKNYTIRITDRINF 306
           G+++ +RI + +  
Sbjct: 97  GEHFAVRIKNLLPP 110


>gi|294496838|ref|YP_003560535.1| type III secretion protein [Yersinia pestis Z176003]
 gi|262364006|gb|ACY64343.1| type III secretion protein [Yersinia pestis D182038]
 gi|294352426|gb|ADE66483.1| type III secretion protein [Yersinia pestis Z176003]
          Length = 305

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
               S    E   +P      QL V +   +  +      + +L+ G +I          
Sbjct: 213 FIGMSHESDELNPEPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 271

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
            L ANG+ +    L  +     +RI  
Sbjct: 272 RLLANGRLLGHGRLVEIQGRLGVRIER 298


>gi|16082731|ref|NP_395177.1| type III secretion system protein [Yersinia pestis CO92]
 gi|31795278|ref|NP_857739.1| type III secretion system protein [Yersinia pestis KIM]
 gi|31795480|ref|NP_857934.1| type III secretion system protein [Yersinia pestis KIM]
 gi|45478541|ref|NP_995368.1| type III secretion system protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51593912|ref|YP_068479.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108793661|ref|YP_636811.1| type III secretion system protein [Yersinia pestis Antiqua]
 gi|145597139|ref|YP_001154603.1| type III secretion system protein [Yersinia pestis Pestoides F]
 gi|149192696|ref|YP_001293928.1| type III secretion system protein [Yersinia pestis CA88-4125]
 gi|162417770|ref|YP_001604475.1| type III secretion system protein [Yersinia pestis Angola]
 gi|165927755|ref|ZP_02223587.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940056|ref|ZP_02228590.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011716|ref|ZP_02232614.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214457|ref|ZP_02240492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401907|ref|ZP_02307393.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422402|ref|ZP_02314155.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422438|ref|ZP_02314191.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422900|ref|ZP_02314653.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426869|ref|ZP_02318622.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186897577|ref|YP_001874688.1| type III secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229896859|ref|ZP_04512019.1| putative type III secretion protein [Yersinia pestis Pestoides A]
 gi|229900214|ref|ZP_04515350.1| putative type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270491107|ref|ZP_06208179.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis KIM D27]
 gi|322836569|ref|YP_004210065.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9]
 gi|1176912|sp|P42713|YSCQ_YERPE RecName: Full=Yop proteins translocation protein Q
 gi|55977795|sp|P40296|YSCQ_YERPS RecName: Full=Yop proteins translocation protein Q
 gi|2465658|gb|AAB72200.1| YscQ [Yersinia pestis]
 gi|2996238|gb|AAC62561.1| Yop proteins translocation protein Q [Yersinia pestis KIM 10]
 gi|3822068|gb|AAC69788.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832463|emb|CAB54920.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|45357163|gb|AAS58559.1| putative type III secretion protein YscQ [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51591609|emb|CAF25413.1| yscQ; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108782208|gb|ABG16263.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145212907|gb|ABP42313.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|148872354|gb|ABR14844.1| putative type III secretion protein [Yersinia pestis CA88-4125]
 gi|162354790|gb|ABX88737.1| type III secretion apparatus protein YscQ [Yersinia pestis Angola]
 gi|165911966|gb|EDR30609.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920191|gb|EDR37492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989323|gb|EDR41624.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204350|gb|EDR48830.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958190|gb|EDR55211.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958639|gb|EDR55660.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958675|gb|EDR55696.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048635|gb|EDR60043.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054168|gb|EDR63995.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186700603|gb|ACC91231.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
           pseudotuberculosis PB1/+]
 gi|229686734|gb|EEO78814.1| putative type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229700130|gb|EEO88169.1| putative type III secretion protein [Yersinia pestis Pestoides A]
 gi|262363849|gb|ACY60569.1| type III secretion protein [Yersinia pestis D106004]
 gi|270334850|gb|EFA45629.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis KIM D27]
 gi|317374481|gb|ADV16656.1| type III secretion inner membrane protein [Yersinia pestis]
 gi|321161343|gb|ADW67049.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9]
          Length = 307

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
               S    E   +P      QL V +   +  +      + +L+ G +I          
Sbjct: 215 FIGMSHESDELNPEPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
            L ANG+ +    L  +     +RI  
Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300


>gi|318608198|emb|CBY78172.1| type III secretion inner membrane protein (YscQ,homologous to
           flagellar export components) [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 307

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
               S    E    P      QL V +   +  +      + +L+ G +I          
Sbjct: 215 FIGMSHESDELNPKPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
            L ANG+ +    L  +     +RI  
Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300


>gi|116250473|ref|YP_766311.1| flagellar motor switch protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255121|emb|CAK06195.1| putative flagellar motor switch protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 195

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  +
Sbjct: 116 DLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175

Query: 293 GK---NYTIRITDRINFDQ 308
                 + +++ + ++  +
Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194


>gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae]
          Length = 325

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 1/91 (1%)

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                           ++ + I   +  +   L+ +  L  G +I           + AN
Sbjct: 214 SETDNLANQSL-TNLEEIQIPIRFEVGRQYIELQALTHLSEGSLIDLAVPVNGDVRIIAN 272

Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
            + + + +L  +     I++ +      + L
Sbjct: 273 QQPLGTGQLVEIQGRLGIKVVELFAKKTEPL 303


>gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
 gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
          Length = 83

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +   ++V I   +      ++ ++ +  G VIP    EK    + AN   +   E+  
Sbjct: 1   MSQIEAVDVEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGEIEI 60

Query: 292 VGKNYTIRITD 302
                 I +T 
Sbjct: 61  RDDRIAITVTR 71


>gi|475122|gb|AAA27677.1| yscQ [Yersinia pseudotuberculosis]
          Length = 307

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
               S    E   +P      QL V +   +  +      + +L+ G +I          
Sbjct: 215 FIGMSHESDELNPEPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
            L ANG+ +    L  +     +RI  
Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300


>gi|83594500|ref|YP_428252.1| surface presentation of antigens (SPOA) protein [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577414|gb|ABC23965.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
           rubrum ATCC 11170]
          Length = 93

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 223 QSEDLIDPFARK-TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
             E      +++  Y + V I   +      +  ++ L  G V+    +      + AN 
Sbjct: 2   ADEQDSKRISKQAVYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYAND 61

Query: 282 KEIYSCEL-GRVGKNYTIRITDRINF 306
             +   E+    G    + +T+ +  
Sbjct: 62  ILVARGEVIITDGDKIGVTLTELVRS 87


>gi|170022957|ref|YP_001719462.1| flagellar motor switch protein [Yersinia pseudotuberculosis YPIII]
 gi|169749491|gb|ACA67009.1| flagellar motor switch protein [Yersinia pseudotuberculosis YPIII]
          Length = 299

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143
            N        L++ +L +  G S E       +          L+  E++L  +   +I+
Sbjct: 85  GNIAFDIDRLLLLNILNDYYGLSQEKYGLSPEKKTTTTGKLSPLTKTEERLKNKLGLEIT 144

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
            +           +      + I             +   I+  +   N +  F + I  
Sbjct: 145 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 192

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
             + +      +   K+  ++  L +        +L V + ++++    TL +++ LK G
Sbjct: 193 PHIDRLIDTIKTKSEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAELMALKEG 252

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            +I     E     +    + ++S  +       
Sbjct: 253 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 284


>gi|209547919|ref|YP_002279836.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533675|gb|ACI53610.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 195

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  +
Sbjct: 116 ELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175

Query: 293 GK---NYTIRITDRINFDQ 308
                 + +++ + ++  +
Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194


>gi|163800130|ref|ZP_02194031.1| putative flagellar motor switch protein [Vibrio sp. AND4]
 gi|159175573|gb|EDP60367.1| putative flagellar motor switch protein [Vibrio sp. AND4]
          Length = 272

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 85/295 (28%), Gaps = 53/295 (17%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMD--------LDVDISYTSCQSGKFSHIIHSFK 78
           D + + K    +    +K + +      +          ++    + +  +FS       
Sbjct: 16  DAELLGKPIHIIREKLEKLISESCSSLTNELQNWLNTSKIEADLFAVELHRFS------- 68

Query: 79  ENFVFSQASLSSWS----SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
              +  +   S++        +I      +  L +           +  + SL+  + +L
Sbjct: 69  -PTLLVKDQTSAYQHQDGGMVYIHTDTQALTKLADRFY----SAANERVSTSLTASDLRL 123

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
            +R    I+          Q+              +               +++  E + 
Sbjct: 124 QERISRIITN-----WLAPQDMW------------QTCEYEAPRGIGLHTEISIAFEGLQ 166

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
            S  L +    +             + +   +L  PF R      V ++  ++ K   L 
Sbjct: 167 GSIHLKLDSTMIQTLIEQL------ALHNETNLYQPFCRSLESTPVRLNVVLSKKTMALS 220

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           DVV L+   ++P          +S   + ++S  +        +      N D++
Sbjct: 221 DVVELQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IFNPDKE 269


>gi|118591116|ref|ZP_01548515.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
 gi|118436192|gb|EAV42834.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
          Length = 88

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 29/75 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ V+I   +   +  +  ++ +  G VI     E     + AN   +   ++  +G+ 
Sbjct: 5   DEIKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGER 64

Query: 296 YTIRITDRINFDQKS 310
             I IT+ +      
Sbjct: 65  IGISITEVLMRPPDI 79


>gi|207109202|ref|ZP_03243364.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 78

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 25/68 (36%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +     +   +  L  ++  + G VI              NG+ I   E+    +N  IR
Sbjct: 1   MFFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIR 60

Query: 300 ITDRINFD 307
           + + ++ +
Sbjct: 61  LNEILDSN 68


>gi|157147123|ref|YP_001454442.1| hypothetical protein CKO_02900 [Citrobacter koseri ATCC BAA-895]
 gi|157084328|gb|ABV14006.1| hypothetical protein CKO_02900 [Citrobacter koseri ATCC BAA-895]
          Length = 294

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 64/211 (30%), Gaps = 23/211 (10%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL--STVEKKLAKRTIAQISAVL--NQ 148
            N        L++ +L +  G S ++     + SL  +  E++L  +   +++ ++   +
Sbjct: 85  GNVAFVIDRILLLNILHDYYGLSKDSSHVAPDESLRVTKTEERLRSKLGQELTQLVICKE 144

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 +   +                + + +   I   +       SF +++    + +
Sbjct: 145 TFGENLDIKVDYS-------------TVISHWSWCITFTLE-GYDHGSFTILLDHHHVDQ 190

Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
              I  S         +          R    L + +  R+     T+  +  +K G +I
Sbjct: 191 MLAILRSPDAADSRAVKSVPLNPAQIERLFDSLPLKLSGRLASLNLTVAQISDIKPGDII 250

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           P          +    ++I+   +       
Sbjct: 251 PIA--INEPLPVFIGKEQIFEAAIVEDRSKL 279


>gi|13472566|ref|NP_104133.1| flagellar motor switch protein FliN [Mesorhizobium loti MAFF303099]
 gi|14023312|dbj|BAB49919.1| flagellar motor switch protein; FliN [Mesorhizobium loti
           MAFF303099]
          Length = 128

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 39/108 (36%), Gaps = 3/108 (2%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
             + +   +    + + +          +     + V++   +   +  + D++ L+ G 
Sbjct: 19  RAIEELRGVLHEEEQRPDAAFRAAAGANSNVIMNIPVDVQIILGSTEMAVADLMALQKGS 78

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVG---KNYTIRITDRINFDQ 308
            +    R      +  NG++I   E+  +      + IR+T+ I   +
Sbjct: 79  TVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEIIAGTK 126


>gi|188583911|ref|YP_001927356.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           populi BJ001]
 gi|179347409|gb|ACB82821.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           populi BJ001]
          Length = 101

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +L V++   +      L  ++ +  G VI     E     + AN   I   ++   G 
Sbjct: 4   LDELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGN 63

Query: 295 NYTIRITDRINFDQ 308
             ++ +T+ I   +
Sbjct: 64  RISVEVTELIRKAE 77


>gi|241203097|ref|YP_002974193.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856987|gb|ACS54654.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 194

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  +
Sbjct: 115 DLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 174

Query: 293 GK---NYTIRITDRINFDQ 308
                 + +++ + ++  +
Sbjct: 175 DNDDTRFGVKLIEVLSTKK 193


>gi|114706763|ref|ZP_01439663.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
 gi|114537711|gb|EAU40835.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
          Length = 131

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 8/74 (10%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                ++V +   +   + ++ +++ L  G ++    +      +  NG+ I   E+  +
Sbjct: 43  DLVLDVSVTMQVVLGSARMSVSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIVVL 102

Query: 293 ---GKNYTIRITDR 303
               + + + +T+ 
Sbjct: 103 DQDDQQFGVTLTEV 116


>gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
 gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
          Length = 80

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 25/75 (33%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              ++V++   +   +  +  V+ L  G +I     E+    + AN   + S  +     
Sbjct: 4   IDNVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVVNRN 63

Query: 295 NYTIRITDRINFDQK 309
              + +   +     
Sbjct: 64  RIAVEVKRMLPKTAD 78


>gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum
           CMR15]
          Length = 132

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 30/68 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            +++   +   +     T+ +++  K  QV+    +      L   GK +   +L  V +
Sbjct: 58  LHRVKAQLTVCVGTATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDE 117

Query: 295 NYTIRITD 302
           ++ +RIT+
Sbjct: 118 HFGVRITE 125


>gi|288550130|ref|ZP_05969371.2| flagellar motor switch protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288316311|gb|EFC55249.1| flagellar motor switch protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 293

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 80/264 (30%), Gaps = 33/264 (12%)

Query: 39  GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
             ++   L   F +K+ ++V     + QS  F+  I    +N             +    
Sbjct: 42  FDIFDARLSIYFLKKLRVNV-----ALQSMTFA--IDQTYKNTQLFSTPF----GSMAFS 90

Query: 99  CSNNLVITLLENLLGASHETIPQLYN--RSLSTVEKKLAKRTIAQISAVL--NQCISTTQ 154
               L++ +L +  G   E+  +  +  + ++  E +L  +    ++ +L   +      
Sbjct: 91  IERTLLLQILHDYYGLGKESRNKSLDVHQPVTKTEDRLKNKIGLDLTRLLIDKETFGQDV 150

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
           E   +                + N++   +   +       SF L+     +        
Sbjct: 151 EIKSD-------------NTTVINQWSWCVTFTLE-GYEQGSFTLLFDNAHVDHLLAKLR 196

Query: 215 SSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           S         +         R  Y L + +   +     T+  +  +K G +IP    E 
Sbjct: 197 SPDADQATSRQAPPTPTQIERIFYGLPLKLHGHVTSLNLTVAQLARIKPGDIIPVNINEN 256

Query: 273 TCAILSANGKEIYSCELGRVGKNY 296
               +    ++I+  ++       
Sbjct: 257 IP--VYIGKEQIFDAKIAEDRGKL 278


>gi|167568051|ref|ZP_02360967.1| translocation protein in type III secretion [Burkholderia
           oklahomensis EO147]
          Length = 349

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
             +V +  ++      L  + +L+ G V+    +      L   GK      L  VG   
Sbjct: 280 DAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQPDGLVTLQVAGKPFARGTLLDVGGRL 339

Query: 297 TIRITDRIN 305
            +RI   + 
Sbjct: 340 AVRIEHLLP 348


>gi|149191149|ref|ZP_01869407.1| flagellar basal-body rod protein B [Vibrio shilonii AK1]
 gi|148834987|gb|EDL51966.1| flagellar basal-body rod protein B [Vibrio shilonii AK1]
          Length = 255

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 69/233 (29%), Gaps = 25/233 (10%)

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            FS   H   +N + +  ++  +  + F          LL   L  +  +  +   RS S
Sbjct: 47  SFSEA-HKPPKNSIKTVLNIEDF-GHVFFFIEPQAADILLYKHL--NTPSPTRKSKRSSS 102

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
                       ++   L   I+    +  +       D+         ++  TTI  + 
Sbjct: 103 DTTLTQTHL---RLFQKLTMAITNILTADASHYAVEHTDH-------QPSDIGTTITFS- 151

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
             +        ++    + K   +  S++           +          V +   +  
Sbjct: 152 -FDEQQIDITFMLDDRYVKKLRDVMESNETFD-------REEILNNLRYQPVELGCVMLH 203

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            + TL ++  L+ G  +P    +     +  NG   +  +L  +     + I 
Sbjct: 204 GQCTLHELSKLQPGDFMPMTLCKN--LTVKVNGHPTFFGKLQSINSELGVEID 254


>gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814]
 gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica
           ATCC 49814]
          Length = 80

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +   K  ++ ++ +  G VIP    E     + AN   I   EL   G+
Sbjct: 1   MDAVEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVIDGE 60

Query: 295 NYTIRITDRINFDQ 308
             ++ +T     + 
Sbjct: 61  RVSVSVTGAAQVED 74


>gi|239834453|ref|ZP_04682781.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
           3301]
 gi|239822516|gb|EEQ94085.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
           3301]
          Length = 115

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++   +      + +++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 39  ELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I  
Sbjct: 99  EDDSSRFGVSLTEIIGK 115


>gi|163853607|ref|YP_001641650.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           extorquens PA1]
 gi|218532467|ref|YP_002423283.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|240141029|ref|YP_002965509.1| putative flagellar motor switch protein FliN [Methylobacterium
           extorquens AM1]
 gi|254563543|ref|YP_003070638.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           DM4]
 gi|163665212|gb|ABY32579.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           extorquens PA1]
 gi|218524770|gb|ACK85355.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|240011006|gb|ACS42232.1| putative flagellar motor switch protein FliN [Methylobacterium
           extorquens AM1]
 gi|254270821|emb|CAX26826.1| putative flagellar motor switch protein FliN [Methylobacterium
           extorquens DM4]
          Length = 101

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +L V++   +      L  ++ +  G VI     E     + AN   I   ++   G 
Sbjct: 4   LDELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGN 63

Query: 295 NYTIRITDRINFDQ 308
             ++ +T+ I   +
Sbjct: 64  RISVEVTELIRKAE 77


>gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
           SB155-2]
 gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
           SB155-2]
          Length = 83

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +  R+   K  + ++++LK G VI      +    +  N K++   E+  +  
Sbjct: 14  LEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIVVIND 73

Query: 295 NYTIRITD 302
            Y +RI D
Sbjct: 74  KYGVRIVD 81


>gi|167572946|ref|ZP_02365820.1| translocation protein in type III secretion [Burkholderia
           oklahomensis C6786]
          Length = 361

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
             +V +  ++      L  + +L+ G V+    +      L   GK      L  VG   
Sbjct: 292 DAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQPDGFVTLQVAGKPFARGTLLDVGGRL 351

Query: 297 TIRITDRIN 305
            +RI   + 
Sbjct: 352 AVRIEHLLP 360


>gi|313673294|ref|YP_004051405.1| surface presentation of antigens (spoa) protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940050|gb|ADR19242.1| surface presentation of antigens (SPOA) protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 94

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 31/76 (40%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            +   +    + +++   +  K  T+ ++++ + G +I           +  N K +   
Sbjct: 3   KEYVIKHFSDVIMDVTVELGRKLCTIGELLSWEQGTIIKLNKTSGEVVDMLVNNKPLAIG 62

Query: 288 ELGRVGKNYTIRITDR 303
           E+  + + +  R++D 
Sbjct: 63  EIMVLDEKFAFRLSDI 78


>gi|254499104|ref|ZP_05111794.1| putative surface presentation of antigens (SPOA) protein
           [Legionella drancourtii LLAP12]
 gi|254351643|gb|EET10488.1| putative surface presentation of antigens (SPOA) protein
           [Legionella drancourtii LLAP12]
          Length = 101

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V    RI     T+ ++  LK GQ +    +      +  N + I   EL     
Sbjct: 31  VGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQKTHEPVEIVLNERVIARGELMSHED 90

Query: 295 NYTIRITDRIN 305
           ++ ++IT+  +
Sbjct: 91  HFAVQITEIYS 101


>gi|254470456|ref|ZP_05083860.1| putative surface presentation of antigens protein [Pseudovibrio sp.
           JE062]
 gi|211960767|gb|EEA95963.1| putative surface presentation of antigens protein [Pseudovibrio sp.
           JE062]
          Length = 88

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 29/79 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +   ++V+I   +   +  +  ++ +  G VI     E     + AN   +   ++  
Sbjct: 1   MNRFDDISVDISVVLGKSEMPVHQLLRMGRGAVIELDTHEADDVTILANNTPVAEGQVTV 60

Query: 292 VGKNYTIRITDRINFDQKS 310
           VG    I IT  +    + 
Sbjct: 61  VGDKVGIVITKVLQRAVEM 79


>gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 351

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P  T+    +    ++N S ++  D          +L + +  ++   + TL  +  +  
Sbjct: 248 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           G ++P          L  NG+ I   EL  +G    +R+
Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345


>gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
 gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
          Length = 80

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 25/72 (34%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              ++V++   +   K  +  V+ L  G +I     E+    + AN   + S  +     
Sbjct: 4   LDNVSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVVNRN 63

Query: 295 NYTIRITDRINF 306
              + +   +  
Sbjct: 64  RIAVEVKRMLPK 75


>gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 351

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P  T+    +    ++N S ++  D          +L + +  ++   + TL  +  +  
Sbjct: 248 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           G ++P          L  NG+ I   EL  +G    +R+
Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345


>gi|23009135|ref|ZP_00050297.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magnetotacticum MS-1]
          Length = 101

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +L V++   +      L  ++ +  G VI     E     + AN   I   ++   G 
Sbjct: 4   LDELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGN 63

Query: 295 NYTIRITDRINFDQ 308
             ++ +T+ I   +
Sbjct: 64  RISVEVTELIRKAE 77


>gi|218679322|ref|ZP_03527219.1| putative flagellar motor switch protein [Rhizobium etli CIAT 894]
          Length = 178

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  +
Sbjct: 99  ELIMDIPIDVQIMLGTNRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 158

Query: 293 GK---NYTIRITDRINFDQ 308
                 + +++ + ++  +
Sbjct: 159 DNDDTRFGVKLIEVLSTKK 177


>gi|110632666|ref|YP_672874.1| flagellar motor switch protein FliN [Mesorhizobium sp. BNC1]
 gi|110283650|gb|ABG61709.1| flagellar motor switch protein FliN [Chelativorans sp. BNC1]
          Length = 121

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           TL K      S+ ++    + D           + V +   +   + T+ +++ L+ G  
Sbjct: 15  TLDKAIEEMRSALHEEAQPNMDAEK--TGFLVDIPVELQIVLGSAEMTVSELMALQRGST 72

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDR 303
           +    R      +  NG+ I   E+  +      + +R+T+ 
Sbjct: 73  VSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114


>gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 344

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P  T+    +    ++N S ++  D          +L + +  ++   + TL  +  +  
Sbjct: 241 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 299

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           G ++P          L  NG+ I   EL  +G    +R+
Sbjct: 300 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 338


>gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040365|gb|ACT57161.1| putative flagellar motor switch protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 147

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V +   +      + ++V L  G VI    R      ++ N ++I   E+  +
Sbjct: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129

Query: 293 GK---NYTIRITDRINFD 307
            +   ++ +R+ + +N  
Sbjct: 130 EEDDTHFGVRVIEILNAQ 147


>gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 301

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P  T+    +    ++N S ++  D          +L + +  ++   + TL  +  +  
Sbjct: 198 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 256

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           G ++P          L  NG+ I   EL  +G    +R+
Sbjct: 257 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 295


>gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 301

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P  T+    +    ++N S ++  D          +L + +  ++   + TL  +  +  
Sbjct: 198 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 256

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           G ++P          L  NG+ I   EL  +G    +R+
Sbjct: 257 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 295


>gi|39545586|gb|AAR27893.1| AscQ [Aeromonas hydrophila]
          Length = 307

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 30/237 (12%)

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE------KKLAKRTIAQ 141
                         +L + L+E L     + +  L   +L+ +       +   +  + +
Sbjct: 72  APDLQQAALFSLPESLQLALIERL----GQPLGNLSCSALAPIATNEAAGQPALQLLLKR 127

Query: 142 ISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMN-MTIENV---- 193
             A L   ++         P       +      + +     V    +  ++  +V    
Sbjct: 128 EGATLAFWLAEPGPLFGKLPTRPSQQRLTLPLTLSLQWGAMRVAISELETLSYGDVLLPL 187

Query: 194 -----ASSFVLII---PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
                    +L +   P    L        +   +           A +   L + +   
Sbjct: 188 PHPLLGQQLLLCVEGRPFAYCLPHQQHLELTAMHNAADDNLD----ATQLDNLPIQVTFE 243

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +  +      + TL+ G +I           + +NG ++ S  L  +     +R+  
Sbjct: 244 VGRQTLDWHSLTTLQPGSLIDLGTPIDGEVRIISNGHQLGSGRLVEIQGRLGVRVES 300


>gi|150395475|ref|YP_001325942.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
 gi|150026990|gb|ABR59107.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
          Length = 215

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 8/74 (10%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + ++I   +   +  +  ++ L  G  I    +      +  NG+ I   E+  +
Sbjct: 137 DLIMDIPIDIQIVLGTSRMQVSSLMNLTEGATIALDRKIGEPVEIMVNGRVIGRGEITVL 196

Query: 293 GK---NYTIRITDR 303
                 + +++ + 
Sbjct: 197 EGDVTRFGVKLLEI 210


>gi|148558477|ref|YP_001257190.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
           25840]
 gi|148369762|gb|ABQ62634.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
           25840]
          Length = 115

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++   +      +  ++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 39  DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I  
Sbjct: 99  EDDSSRFGVSLTEIIGK 115


>gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 351

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P  T     +    ++N S ++  D          +L + +  ++   + TL  +  +  
Sbjct: 248 PLRTFSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           G ++P          L  NG+ I   EL  +G    +R+
Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345


>gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 351

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P  T     +    ++N S ++  D          +L + +  ++   + TL  +  +  
Sbjct: 248 PLRTFSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           G ++P          L  NG+ I   EL  +G    +R+
Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345


>gi|189022343|ref|YP_001932084.1| Flagellar motor switch FliN protein [Brucella abortus S19]
 gi|225628599|ref|ZP_03786633.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
 gi|237816638|ref|ZP_04595630.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
 gi|254691435|ref|ZP_05154689.1| Flagellar motor switch FliN protein [Brucella abortus bv. 6 str.
           870]
 gi|254695266|ref|ZP_05157094.1| Flagellar motor switch FliN protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698365|ref|ZP_05160193.1| Flagellar motor switch FliN protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699434|ref|ZP_05161262.1| Flagellar motor switch FliN protein [Brucella suis bv. 5 str. 513]
 gi|254706319|ref|ZP_05168147.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
           M163/99/10]
 gi|254711389|ref|ZP_05173200.1| Flagellar motor switch FliN protein [Brucella pinnipedialis B2/94]
 gi|254711988|ref|ZP_05173799.1| Flagellar motor switch FliN protein [Brucella ceti M644/93/1]
 gi|254715058|ref|ZP_05176869.1| Flagellar motor switch FliN protein [Brucella ceti M13/05/1]
 gi|254720634|ref|ZP_05182445.1| Flagellar motor switch FliN protein [Brucella sp. 83/13]
 gi|256029981|ref|ZP_05443595.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
           M292/94/1]
 gi|256043046|ref|ZP_05445991.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111968|ref|ZP_05452919.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256621|ref|ZP_05462157.1| Flagellar motor switch FliN protein [Brucella abortus bv. 9 str.
           C68]
 gi|256262890|ref|ZP_05465422.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544316|ref|ZP_05820137.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
 gi|260564278|ref|ZP_05834763.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260568541|ref|ZP_05839010.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
 gi|260757054|ref|ZP_05869402.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
           870]
 gi|260759575|ref|ZP_05871923.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
           292]
 gi|260762819|ref|ZP_05875151.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882864|ref|ZP_05894478.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
           C68]
 gi|261215631|ref|ZP_05929912.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
           Tulya]
 gi|261216765|ref|ZP_05931046.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
 gi|261313766|ref|ZP_05952963.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M163/99/10]
 gi|261318995|ref|ZP_05958192.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
 gi|261319632|ref|ZP_05958829.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
 gi|261749885|ref|ZP_05993594.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
 gi|265985678|ref|ZP_06098413.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
 gi|265987002|ref|ZP_06099559.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M292/94/1]
 gi|265989484|ref|ZP_06102041.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993417|ref|ZP_06105974.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
           Ether]
 gi|294853147|ref|ZP_06793819.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
           07-0026]
 gi|297249978|ref|ZP_06933679.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
           str. B3196]
 gi|306837358|ref|ZP_07470237.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
 gi|306841072|ref|ZP_07473795.1| flagellar motor switch protein FliN [Brucella sp. BO2]
 gi|306846303|ref|ZP_07478864.1| flagellar motor switch protein FliN [Brucella sp. BO1]
 gi|189020917|gb|ACD73638.1| Flagellar motor switch FliN protein [Brucella abortus S19]
 gi|225616445|gb|EEH13493.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
 gi|237787451|gb|EEP61667.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
 gi|260097587|gb|EEW81461.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
 gi|260151921|gb|EEW87014.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155206|gb|EEW90287.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
 gi|260669893|gb|EEX56833.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
           292]
 gi|260673240|gb|EEX60061.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260677162|gb|EEX63983.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
           870]
 gi|260872392|gb|EEX79461.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
           C68]
 gi|260917238|gb|EEX84099.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
           Tulya]
 gi|260921854|gb|EEX88422.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
 gi|261292322|gb|EEX95818.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
 gi|261298218|gb|EEY01715.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
 gi|261302792|gb|EEY06289.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M163/99/10]
 gi|261739638|gb|EEY27564.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
 gi|262764287|gb|EEZ10319.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000153|gb|EEZ12843.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092727|gb|EEZ16936.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264659199|gb|EEZ29460.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M292/94/1]
 gi|264664270|gb|EEZ34531.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
 gi|294818802|gb|EFG35802.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
           07-0026]
 gi|297173847|gb|EFH33211.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
           str. B3196]
 gi|306273298|gb|EFM55167.1| flagellar motor switch protein FliN [Brucella sp. BO1]
 gi|306288910|gb|EFM60213.1| flagellar motor switch protein FliN [Brucella sp. BO2]
 gi|306407550|gb|EFM63750.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
 gi|326410310|gb|ADZ67374.1| Flagellar motor switch FliN protein [Brucella melitensis M28]
 gi|326553603|gb|ADZ88242.1| Flagellar motor switch FliN protein [Brucella melitensis M5-90]
          Length = 115

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++   +      +  ++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 39  DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I  
Sbjct: 99  EDDSSRFGVSLTEIIGK 115


>gi|186896785|ref|YP_001873897.1| putative flagellar motor switch protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|186699811|gb|ACC90440.1| putative flagellar motor switch protein [Yersinia
           pseudotuberculosis PB1/+]
          Length = 299

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143
            N        L++ +L +  G S E       +          L+  E++L  +   +I+
Sbjct: 85  GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 144

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
            +           +      + I             +   I+  +   N +  F + I  
Sbjct: 145 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 192

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
             + +      +   K+  ++  L +        +L V + ++++    TL +++ LK G
Sbjct: 193 PHIDRLIDTIKTKSEKAVEKNVSLSERQLEYLVKKLPVTLTSQLSNINLTLAELMALKEG 252

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            +I     E     +    + ++S  +       
Sbjct: 253 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 284


>gi|51597651|ref|YP_071842.1| flagellar motor switch protein. [Yersinia pseudotuberculosis IP
           32953]
 gi|51590933|emb|CAH22589.1| Putative flagellar motor switch protein [Yersinia
           pseudotuberculosis IP 32953]
          Length = 303

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143
            N        L++ +L +  G S E       +          L+  E++L  +   +I+
Sbjct: 89  GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 148

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
            +           +      + I             +   I+  +   N +  F + I  
Sbjct: 149 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 196

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
             + +      +   K+  ++  L +        +L V + ++++    TL +++ LK G
Sbjct: 197 PHIDRLIDTIKTKSEKAVEKNVSLSERQLEYLVKKLPVTLTSQLSNINLTLAELMALKEG 256

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            +I     E     +    + ++S  +       
Sbjct: 257 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 288


>gi|254234793|ref|ZP_04928116.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
 gi|126166724|gb|EAZ52235.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
          Length = 309

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL + +   +  +   L  + TL+ G ++           + AN + +   EL R+ 
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293

Query: 294 KNYTIRITDRINFDQ 308
               +R+T     D+
Sbjct: 294 DRLGVRVTRLFGHDE 308


>gi|319795615|ref|YP_004157255.1| type III secretion system apparatus protein yscq/hrcq [Variovorax
           paradoxus EPS]
 gi|315598078|gb|ADU39144.1| type III secretion system apparatus protein YscQ/HrcQ [Variovorax
           paradoxus EPS]
          Length = 379

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 43/137 (31%), Gaps = 7/137 (5%)

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA--- 232
              +    ++    I   A   +    + + +       S+  +         +  A   
Sbjct: 244 TPLDAAIVVS--AQIGRRAGFRLFAFAEGSRITIQQSLHSAMKQDPAAPIAAAESGASLP 301

Query: 233 -RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK-TCAILSANGKEIYSCELG 290
             +   L V +   +   + +L ++  L+ G V         +   + A+G  +    L 
Sbjct: 302 IDRLDALEVMLRFEVGDIELSLGELKALRPGHVFDLGQPLNRSPIRILAHGNVLGKGYLV 361

Query: 291 RVGKNYTIRITDRINFD 307
            VG    +R+++    +
Sbjct: 362 AVGDRLGVRVSEFAPGE 378


>gi|253988530|ref|YP_003039886.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211637888|emb|CAR66517.1| type iii secretion component protein sctq [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779980|emb|CAQ83141.1| type iii secretion component protein sctq [Photorhabdus
           asymbiotica]
          Length = 309

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L +++   +  +   L  + +L+ G ++           +  N K + S  L  +  
Sbjct: 235 LNSLEIHVSFEVGRQTLDLHTLTSLQPGSLLDLGVPPDGEVRILVNQKCLGSGRLVDIQG 294

Query: 295 NYTIRITDRINFDQK 309
              +R+ +R+  +++
Sbjct: 295 RLGVRV-ERLAMEKE 308



 Score = 36.9 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 25/113 (22%), Gaps = 22/113 (19%)

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
             S+     +              L  P         I    Q                +
Sbjct: 112 APSSSACVLLRFERQ--GATLPLWLTEPS----PLLAILPKRQPG--------------E 151

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF--LHREKTCAILSANGKEIY 285
              + + +  +      TL +  TL+ G V+      +  T  +    G    
Sbjct: 152 YLTIPLLLSLQWGAINLTLNEFRTLESGDVLLLPPQQQPDTPLLGYLEGHPWA 204


>gi|218892350|ref|YP_002441217.1| type III secretion system protein [Pseudomonas aeruginosa LESB58]
 gi|218772576|emb|CAW28359.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           LESB58]
          Length = 309

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL + +   +  +   L  + TL+ G ++           + AN + +   EL R+ 
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293

Query: 294 KNYTIRITDRINFDQ 308
               +R+T     D+
Sbjct: 294 DRLGVRVTRLFGHDE 308


>gi|107101126|ref|ZP_01365044.1| hypothetical protein PaerPA_01002158 [Pseudomonas aeruginosa PACS2]
 gi|254240039|ref|ZP_04933361.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
 gi|126193417|gb|EAZ57480.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
          Length = 309

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL + +   +  +   L  + TL+ G ++           + AN + +   EL R+ 
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293

Query: 294 KNYTIRITDRINFDQ 308
               +R+T     D+
Sbjct: 294 DRLGVRVTRLFGHDE 308


>gi|23499886|ref|NP_699326.1| flagellar motor switch protein FliN [Brucella suis 1330]
 gi|23463461|gb|AAN33331.1| flagellar motor switch protein FliN, putative [Brucella suis 1330]
          Length = 106

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++   +      +  ++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 30  DLIMGIPVDVQVVLGGTTMPVSSLMKLGCGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 89

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I  
Sbjct: 90  EDDSSRFGVSLTEIIGK 106


>gi|17989457|ref|NP_542090.1| flagellar motor switch protein FLIN [Brucella melitensis bv. 1 str.
           16M]
 gi|62317076|ref|YP_222929.1| flagellar motor switch protein FliN [Brucella abortus bv. 1 str.
           9-941]
 gi|83269069|ref|YP_418360.1| flagellar motor switch FliN [Brucella melitensis biovar Abortus
           2308]
 gi|161620209|ref|YP_001594095.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
 gi|225685984|ref|YP_002733956.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
           23457]
 gi|254731810|ref|ZP_05190388.1| Flagellar motor switch FliN protein [Brucella abortus bv. 4 str.
           292]
 gi|256014913|ref|YP_003104922.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
 gi|17985336|gb|AAL54354.1| flagellar motor switch protein flin [Brucella melitensis bv. 1 str.
           16M]
 gi|62197269|gb|AAX75568.1| flagellar motor switch protein FliN, hypothetical [Brucella abortus
           bv. 1 str. 9-941]
 gi|82939343|emb|CAJ12288.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Brucella melitensis biovar
           Abortus 2308]
 gi|161337020|gb|ABX63324.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
 gi|225642089|gb|ACO02002.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
           23457]
 gi|255997573|gb|ACU49260.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
          Length = 106

 Score = 58.1 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++   +      +  ++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 30  DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 89

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I  
Sbjct: 90  EDDSSRFGVSLTEIIGK 106


>gi|296535009|ref|ZP_06897289.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
 gi|296264664|gb|EFH11009.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
          Length = 93

 Score = 58.1 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 1/91 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            ++S       +     +   + VN+   +  K+  +  +  L  G VI F  +      
Sbjct: 1   MSESAPTENPFLAERKPRIMDIPVNVQVVLGNKRLPMAALFNLSRGSVIEFDKKVGEPID 60

Query: 277 LSANGKEIYSCEL-GRVGKNYTIRITDRINF 306
           L AN + I   E+        +I IT+ ++ 
Sbjct: 61  LMANERLIARGEIQITDDGRLSISITEIVSS 91


>gi|27550058|gb|AAO18041.1| LscQ [Photorhabdus luminescens]
          Length = 309

 Score = 58.1 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 25/70 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                L V++   +  +   L+ + +L+ G ++           +  N K + S  L  +
Sbjct: 233 TDLNDLEVHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGVVRILVNQKCLGSGRLVDI 292

Query: 293 GKNYTIRITD 302
                +RI  
Sbjct: 293 EGRLGVRIEH 302


>gi|238762375|ref|ZP_04623346.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
 gi|238699360|gb|EEP92106.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
          Length = 105

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 30/90 (33%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
               ++   + + S+           ++ V +   +      L +++++    VI     
Sbjct: 3   FSVPTASVPAVDNSQHEQQRKISLFSRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKL 62

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRI 300
                 +  NG      E+  V + Y +RI
Sbjct: 63  AGEPLDIKINGIMFGQAEVVVVNEKYGLRI 92


>gi|49083573|gb|AAT51064.1| PA1694 [synthetic construct]
          Length = 310

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL + +   +  +   L  + TL+ G ++           + AN + +   EL R+ 
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293

Query: 294 KNYTIRITDRINFDQ 308
               +R+T     D+
Sbjct: 294 DRLGVRVTRLFGHDE 308


>gi|149203109|ref|ZP_01880080.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
           TM1035]
 gi|149143655|gb|EDM31691.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
           TM1035]
          Length = 98

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 4/96 (4%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            +     +E  ++        + + I   +   +  ++D++ L    V+    R      
Sbjct: 1   MDNKTGGNETHVNDLQNPFSSVPIEITVSVGKARPLIRDLLKLGKNAVLVLDRRVDDAVE 60

Query: 277 LSANGKEIYSCEL----GRVGKNYTIRITDRINFDQ 308
           L    + I   +L    G       +R+T+  N   
Sbjct: 61  LYVGERLIARGQLEELAGDQQGQIAVRVTEVANLQD 96


>gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14]
 gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter
           hamburgensis X14]
          Length = 87

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 25/75 (33%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +++V++   +      +  V+ L  G +I     E+    + AN   + S  +     
Sbjct: 11  LDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVVVNRN 70

Query: 295 NYTIRITDRINFDQK 309
              + +   +     
Sbjct: 71  RIAVEVKQMLPRTPD 85


>gi|116049644|ref|YP_791551.1| type III secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584865|gb|ABJ10880.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 309

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL + +   +  +   L  + TL+ G ++           + AN + +   EL R+ 
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGELVRLQ 293

Query: 294 KNYTIRITDRINFDQ 308
               +R+T     D+
Sbjct: 294 DRLGVRVTRLFGHDE 308


>gi|77464888|ref|YP_354392.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
 gi|126463730|ref|YP_001044844.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|77389306|gb|ABA80491.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
 gi|126105394|gb|ABN78072.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 88

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290
             Q+ + I   +   +  +++++ L+   V+P   R      L    K I   EL    G
Sbjct: 9   LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDKLIGRGELTELEG 68

Query: 291 RVGKNYTIRITDRIN 305
                  +R+T+  N
Sbjct: 69  EQAGQLAVRLTEVAN 83


>gi|15596891|ref|NP_250385.1| type III secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|9947667|gb|AAG05083.1|AE004596_9 translocation protein in type III secretion [Pseudomonas aeruginosa
           PAO1]
          Length = 309

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL + +   +  +   L  + TL+ G ++           + AN + +   EL R+ 
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293

Query: 294 KNYTIRITDRINFDQ 308
               +R+T     D+
Sbjct: 294 DRLGVRVTRLFGHDE 308


>gi|163844318|ref|YP_001621973.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
 gi|163675041|gb|ABY39151.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
          Length = 106

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++   +      +  ++ L +G VI    +      +  NG+ I   E+  +
Sbjct: 30  DLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 89

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I  
Sbjct: 90  EDDSPRFGVSLTEIIGK 106


>gi|296389922|ref|ZP_06879397.1| type III secretion system protein [Pseudomonas aeruginosa PAb1]
          Length = 309

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL + +   +  +   L  + TL+ G ++           + AN + +   EL R+ 
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293

Query: 294 KNYTIRITDRINFDQ 308
               +R+T     D+
Sbjct: 294 DRLGVRVTRLFGHDE 308


>gi|313110380|ref|ZP_07796269.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
 gi|310882771|gb|EFQ41365.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
          Length = 309

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL + +   +  +   L  + TL+ G ++           + AN + +   EL R+ 
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGELVRLQ 293

Query: 294 KNYTIRITDRINFDQ 308
               +R+T     D+
Sbjct: 294 DRLGVRVTRLFGHDE 308


>gi|300024613|ref|YP_003757224.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526434|gb|ADJ24903.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 140

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 19/60 (31%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V +   +   K  +  +  L  G V+           +  NG  I   E+  + +
Sbjct: 62  IAGLPVMMKVVLGSAKMPVATLAKLAKGSVVKLDKMVGDPVDILVNGHLIARGEVVILNE 121


>gi|312115254|ref|YP_004012850.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220383|gb|ADP71751.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 120

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +  ++ +++   +      +  V  L  G VIP   +      +  NG+ I   E+  +
Sbjct: 41  ERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPLDRKVGDAVDVMINGRIIAKGEIVVL 100

Query: 293 GK---NYTIRITDRIN 305
            +    + + +T+ I+
Sbjct: 101 DEEGSRFGVTLTEMID 116


>gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255]
 gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 97

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 26/76 (34%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +++V++   +      +  V+ L  G +I     E+    + AN   + S  +     
Sbjct: 21  LDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVMVNRN 80

Query: 295 NYTIRITDRINFDQKS 310
             T+ +   +      
Sbjct: 81  RITVEVKQMLPRAPDR 96


>gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 83

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + V +   ++      + ++ +K G +IP     +   I+          E+  +
Sbjct: 8   KLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIGEMTNI 67

Query: 293 GKNYTIRITDRINFD 307
            + Y IRI D I  D
Sbjct: 68  NEKYGIRIVDLIKED 82


>gi|323139659|ref|ZP_08074701.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
 gi|322395091|gb|EFX97650.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
          Length = 124

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
           +  +  +        ++ V +   +      +  ++ L  G VIP  HR      +  NG
Sbjct: 32  DTDKSQLRRI-DSILRIPVVVQVVVGSATLPVSSLLKLGRGAVIPLDHRVGDPVDIVVNG 90

Query: 282 KEIYSCELGRV---GKNYTIRITDRINFDQKSLK 312
           + I   E+  V   G  + + +T+      + L 
Sbjct: 91  RTIARGEVVVVEEDGARFGVSLTEICEPQNEQLN 124


>gi|327254532|gb|EGE66148.1| surface presentation of antigens family protein [Escherichia coli
           STEC_7v]
          Length = 123

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   ++  +  L D++ +    VI           +  N   +   E+  
Sbjct: 42  MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101

Query: 292 VGKNYTIRITD 302
           V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112


>gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 83

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 23/71 (32%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +   ++V +   +      +  ++ +  G VIP    E     + AN   +    +  
Sbjct: 1   MSQIEAVDVELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARGMIEI 60

Query: 292 VGKNYTIRITD 302
                 I +T 
Sbjct: 61  REDRIAITVTR 71


>gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
 gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
          Length = 99

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 28/90 (31%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            +     S D   P      ++ V++   +      +  V+ L  G +I     E     
Sbjct: 3   MSSVTESSRDFGGPAVSTLDKVTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVK 62

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + AN   I +  +        + + + +  
Sbjct: 63  VLANNLPIANGVVLVDRNRIAVEVKEMLPR 92


>gi|22127342|ref|NP_670765.1| hypothetical protein y3467 [Yersinia pestis KIM 10]
 gi|45442782|ref|NP_994321.1| flagellar motor switch protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108810734|ref|YP_646501.1| flagellar motor switch protein [Yersinia pestis Nepal516]
 gi|145597803|ref|YP_001161879.1| flagellar motor switch protein [Yersinia pestis Pestoides F]
 gi|150260263|ref|ZP_01916991.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
           CA88-4125]
 gi|165924818|ref|ZP_02220650.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939061|ref|ZP_02227613.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009073|ref|ZP_02229971.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212096|ref|ZP_02238131.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167419140|ref|ZP_02310893.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425206|ref|ZP_02316959.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466355|ref|ZP_02331059.1| flagellar motor switch protein [Yersinia pestis FV-1]
 gi|229837394|ref|ZP_04457557.1| Flagellar motor switch protein fliM [Yersinia pestis Pestoides A]
 gi|229840607|ref|ZP_04460766.1| Flagellar motor switch protein fliM [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842842|ref|ZP_04462994.1| Flagellar motor switch protein fliM [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900931|ref|ZP_04516055.1| Flagellar motor switch protein fliM [Yersinia pestis Nepal516]
 gi|294502775|ref|YP_003566837.1| hypothetical protein YPZ3_0665 [Yersinia pestis Z176003]
 gi|21960425|gb|AAM87016.1|AE013950_1 hypothetical [Yersinia pestis KIM 10]
 gi|45437648|gb|AAS63198.1| Flagellar motor switch protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108774382|gb|ABG16901.1| flagellar motor switch protein [Yersinia pestis Nepal516]
 gi|145209499|gb|ABP38906.1| flagellar motor switch protein [Yersinia pestis Pestoides F]
 gi|149289671|gb|EDM39748.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
           CA88-4125]
 gi|165913017|gb|EDR31642.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923018|gb|EDR40169.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992412|gb|EDR44713.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206842|gb|EDR51322.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963134|gb|EDR59155.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167055969|gb|EDR65750.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682270|gb|EEO78362.1| Flagellar motor switch protein fliM [Yersinia pestis Nepal516]
 gi|229690109|gb|EEO82166.1| Flagellar motor switch protein fliM [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696973|gb|EEO87020.1| Flagellar motor switch protein fliM [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705517|gb|EEO91527.1| Flagellar motor switch protein fliM [Yersinia pestis Pestoides A]
 gi|262360807|gb|ACY57528.1| hypothetical protein YPD4_0619 [Yersinia pestis D106004]
 gi|262364752|gb|ACY61309.1| hypothetical protein YPD8_0619 [Yersinia pestis D182038]
 gi|294353234|gb|ADE63575.1| hypothetical protein YPZ3_0665 [Yersinia pestis Z176003]
 gi|320016725|gb|ADW00297.1| Flagellar motor switch protein fliM [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 299

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143
            N        L++ +L +  G S E       +          L+  E++L  +   +I+
Sbjct: 85  GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 144

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
            +           +      + I             +   I+  +   N +  F + I  
Sbjct: 145 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 192

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
             + +      +   K+  ++  L +        +L V + ++++    TL +++ LK G
Sbjct: 193 PHIDRLIDTIKTKNEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAELMALKEG 252

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            +I     E     +    + ++S  +       
Sbjct: 253 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 284


>gi|218927898|ref|YP_002345773.1| putative flagellar motor switch protein [Yersinia pestis CO92]
 gi|115346509|emb|CAL19385.1| putative flagellar motor switch protein [Yersinia pestis CO92]
          Length = 303

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143
            N        L++ +L +  G S E       +          L+  E++L  +   +I+
Sbjct: 89  GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 148

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
            +           +      + I             +   I+  +   N +  F + I  
Sbjct: 149 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 196

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
             + +      +   K+  ++  L +        +L V + ++++    TL +++ LK G
Sbjct: 197 PHIDRLIDTIKTKNEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAELMALKEG 256

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            +I     E     +    + ++S  +       
Sbjct: 257 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 288


>gi|256059634|ref|ZP_05449831.1| Flagellar motor switch FliN protein [Brucella neotomae 5K33]
 gi|261323604|ref|ZP_05962801.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
 gi|261299584|gb|EEY03081.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
          Length = 115

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++   +      +  ++ L  G VI    +      +  NG+ I   E+  +
Sbjct: 39  DLIMGIPVDVQMVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98

Query: 293 GK---NYTIRITDRINF 306
                 + + +T+ I  
Sbjct: 99  EDDSSRFGVSLTEIIGK 115


>gi|28628131|gb|AAO34615.1| HrcQ [Erwinia chrysanthemi]
          Length = 413

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +  R      TL+D+  L  G V+         A L    + +   EL  V     ++
Sbjct: 337 LALTVRCGYLTLTLQDLQQLAPGSVLTLQQATPGEATLYHGEQPLALGELVDVEGRLGLQ 396

Query: 300 ITDRINFDQKS 310
           IT R+  D + 
Sbjct: 397 ITRRLGVDGEI 407


>gi|159184368|ref|NP_353589.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
           C58]
 gi|3913685|sp|Q57259|FLIN_AGRT5 RecName: Full=Flagellar motor switch protein FliN
 gi|39092|emb|CAA46543.1| FliN homologue [Agrobacterium tumefaciens]
 gi|1480839|gb|AAC45323.1| FliN [Agrobacterium tumefaciens]
 gi|2459704|gb|AAB71780.1| FliN [Agrobacterium tumefaciens]
 gi|159139682|gb|AAK86374.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
           C58]
          Length = 179

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 7/80 (8%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + +++   +   +  +  +++L+ G  I    +      +  NG+ I   E+  
Sbjct: 99  MEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITV 158

Query: 292 VGK---NYTIRITDRINFDQ 308
           +      + +++ + ++  +
Sbjct: 159 LEDDDTRFGVKLIEVLSTRK 178


>gi|260574385|ref|ZP_05842389.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
           SW2]
 gi|259023281|gb|EEW26573.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
           SW2]
          Length = 89

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GR 291
            Q+ + I   +   +  ++D++ L+   V+P   R      L    + I   EL    G 
Sbjct: 11  SQVPIEITISVGKARPQVRDLLKLQRDAVLPLDRRVDDPVELYVGDRLIARGELQELDGD 70

Query: 292 VGKNYTIRITDRIN 305
                 +R+T+  N
Sbjct: 71  QAGQLAVRLTEVAN 84


>gi|662861|gb|AAA79753.1| flagellar protein [Pseudomonas aeruginosa]
          Length = 65

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +  ++  L+D++ ++ G VIP         ++ ANG   +  +LG    N  ++I 
Sbjct: 1   LGATVVRRQLKLRDILHMQPGDVIPVEMP--EHMVMRANGVPAFKVKLGAHKGNLALQIL 58

Query: 302 DRINF 306
           + +  
Sbjct: 59  EAVER 63


>gi|255654316|ref|ZP_05399725.1| flagellar motor switch protein [Clostridium difficile QCD-23m63]
 gi|296452606|ref|ZP_06894300.1| flagellar motor switch protein [Clostridium difficile NAP08]
 gi|296880982|ref|ZP_06904928.1| flagellar motor switch protein [Clostridium difficile NAP07]
 gi|296258567|gb|EFH05468.1| flagellar motor switch protein [Clostridium difficile NAP08]
 gi|296428003|gb|EFH13904.1| flagellar motor switch protein [Clostridium difficile NAP07]
          Length = 104

 Score = 57.3 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +  +   VN+   I     T+K+++ LK G +I           + AN +     E   
Sbjct: 27  NQNVFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESII 86

Query: 292 VGKNYTIRITDRINFD 307
             +  ++R++   + D
Sbjct: 87  TNEKLSVRLSKIEDSD 102


>gi|85706152|ref|ZP_01037247.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
 gi|85669316|gb|EAQ24182.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
          Length = 100

 Score = 57.3 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 4/97 (4%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             +   + S             + + I   +   + +++D++ L    V+    R     
Sbjct: 1   MMDVGPDDSGGFTSDLQNPFSSVPIEITVSVGKARPSIRDLLKLGKNAVLVLDRRVDDMV 60

Query: 276 ILSANGKEIYSCEL----GRVGKNYTIRITDRINFDQ 308
            L    + +    L    G       +R+T+  N   
Sbjct: 61  ELYVGERLVARGRLEELDGDQQGQIAVRVTEVANLQD 97


>gi|328543417|ref|YP_004303526.1| surface presentation of antigens protein [polymorphum gilvum
           SL003B-26A1]
 gi|326413162|gb|ADZ70225.1| Putative surface presentation of antigens protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 88

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 32/75 (42%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            +++V+I   +   +  +  ++ +  G VI     E+    + AN   +   ++  +G+ 
Sbjct: 5   DEISVDISVVLGTTEMPVHQLLRMGRGAVIDLDVAEEDDVKIFANNTLVAKGQVVLLGER 64

Query: 296 YTIRITDRINFDQKS 310
             + IT+ +    + 
Sbjct: 65  IGVSITEVLMRAPEV 79


>gi|89069802|ref|ZP_01157137.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
 gi|89044603|gb|EAR50719.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
          Length = 96

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290
              + + I   +   + ++ +++TL    V+P          L    + I   EL    G
Sbjct: 17  LRAVPIEITIVVGRARPSVGELLTLDQNAVLPLDRGVDDPVELYVGDRLIARGELQEHAG 76

Query: 291 RVGKNYTIRITDR 303
                  +R+T+ 
Sbjct: 77  GEPGQLAVRLTEV 89


>gi|332559787|ref|ZP_08414109.1| FliN2 [Rhodobacter sphaeroides WS8N]
 gi|332277499|gb|EGJ22814.1| FliN2 [Rhodobacter sphaeroides WS8N]
          Length = 88

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290
             Q+ + I   +   +  +++++ L+   V+P   R      L    + I   EL    G
Sbjct: 9   LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDRLIGRGELTELEG 68

Query: 291 RVGKNYTIRITDRIN 305
                  +R+T+  N
Sbjct: 69  EQAGQLAVRLTEVAN 83


>gi|323975948|gb|EGB71042.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
          Length = 123

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   ++  +  L D++ +    VI           +  N   +   E+  
Sbjct: 42  MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101

Query: 292 VGKNYTIRITD 302
           V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112


>gi|306813324|ref|ZP_07447517.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli NC101]
 gi|305854087|gb|EFM54526.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli NC101]
          Length = 123

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   ++  +  L D++ +    VI           +  N   +   E+  
Sbjct: 42  MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101

Query: 292 VGKNYTIRITD 302
           V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112


>gi|331645399|ref|ZP_08346503.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli M605]
 gi|331045561|gb|EGI17687.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli M605]
          Length = 283

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +    +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKSHNGFPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  SSF +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|34498080|ref|NP_902295.1| surface presentation of antigens protein SpaO [Chromobacterium
           violaceum ATCC 12472]
 gi|34103935|gb|AAQ60295.1| surface presentation of antigens; secretory proteins
           [Chromobacterium violaceum ATCC 12472]
          Length = 296

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 59/228 (25%), Gaps = 21/228 (9%)

Query: 93  SNFFIGCSNNLVITLLENLLG----ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S     C   L   + +  LG           QL  R +  ++    +  + +  A    
Sbjct: 79  SELIAACEAPLSWPVADMPLGRIVAGERREGSQLPQRPMLRMDTPQGEVWLEKAPAPAEA 138

Query: 149 CISTTQESSP---NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI---ENVASSFVLIIP 202
                    P          +          + + +       T+        ++     
Sbjct: 139 ARDRVPGWLPMPLRFLLGDSMVSPSLLRRAKAGDVLLISRPAQTVSCNGRAIGTY----- 193

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           Q T     +   +    +                +L V ++  +   + TL ++  L   
Sbjct: 194 QWTEEGIIMEWQNEMAAAAETRPL------ADLDRLPVRLEFVLQQSEVTLDELRELCRS 247

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            V+P     +    L ANG  +   EL ++     + +   +      
Sbjct: 248 NVLPLSADAERRVELRANGALLGRGELVQLDGRLGVEVAQWLGGSGDV 295


>gi|170679793|ref|YP_001742353.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
           SMS-3-5]
 gi|300936106|ref|ZP_07151046.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           21-1]
 gi|170517511|gb|ACB15689.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
           SMS-3-5]
 gi|300458726|gb|EFK22219.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           21-1]
          Length = 123

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   ++  +  L D++ +    VI           +  N   +   E+  
Sbjct: 42  MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101

Query: 292 VGKNYTIRITD 302
           V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112


>gi|238752882|ref|ZP_04614347.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
 gi|238708921|gb|EEQ01174.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
          Length = 112

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
             T L    I   S N S ++ +  I  F     ++ V +   +      L +++T+   
Sbjct: 6   ISTPLPVEPIEAPSVNDSLHEQQRKISLF----SRIPVTLTLEVASVDIPLSELMTVNSD 61

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            VI           +  NG      E+  + + Y +RI  
Sbjct: 62  SVIELDKLAGEPLDIKVNGIMFGQAEVVVINEKYGLRIVS 101


>gi|325291949|ref|YP_004277813.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
 gi|45479284|gb|AAS66686.1| FliN [Agrobacterium sp. H13-3]
 gi|325059802|gb|ADY63493.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
          Length = 179

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 7/80 (8%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + +++   +   +  +  +++L+ G  I    +      +  NG+ I   E+  
Sbjct: 99  MDLIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITV 158

Query: 292 VGK---NYTIRITDRINFDQ 308
           +      + +++ + ++  +
Sbjct: 159 LEDDDTRFGVKLIEVMSTRK 178


>gi|37527632|ref|NP_930976.1| type III secretion system protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787067|emb|CAE16142.1| Type III secretion component protein SctQ [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 310

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                L V++   +  +   L+ + +L+ G ++           +  N K + S  L  +
Sbjct: 234 TDLNDLEVHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGAVRILVNQKCLGSGRLVDI 293

Query: 293 GKNYTIRITD 302
                +R+  
Sbjct: 294 EGRLGVRVEH 303


>gi|188494288|ref|ZP_03001558.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|188489487|gb|EDU64590.1| flagellar motor switch protein FliN [Escherichia coli 53638]
          Length = 127

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   ++  +  L D++ +    VI           +  N   +   E+  
Sbjct: 46  MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105

Query: 292 VGKNYTIRITD 302
           V + Y +R+ +
Sbjct: 106 VNEKYGLRVLE 116


>gi|218133675|ref|ZP_03462479.1| hypothetical protein BACPEC_01544 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991050|gb|EEC57056.1| hypothetical protein BACPEC_01544 [Bacteroides pectinophilus ATCC
           43243]
          Length = 220

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 47/151 (31%), Gaps = 9/151 (5%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
                  ++  VDI+        +  +   +    V  Q S       N  +    N V 
Sbjct: 67  ATTLSSLLNQRVDITTPHVSISTWDDLARQYDRPCVMMQISYKEGIDGNNVLILRENDVK 126

Query: 106 TLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163
            + + ++G     +   +L +  LS + +    + +   +  ++   +   + SP + + 
Sbjct: 127 IITDLMMGGPGNADPNEELTDLHLSAIGEA-MNQMMGSAATSMSSMFNRKIDISPPVSNL 185

Query: 164 YDIDYLKKNTNRLSNEFV---TTINMNMTIE 191
            ++           +        +   +TI 
Sbjct: 186 VEVYNNDTEDL--PDFLKGKFVEVMFKLTIG 214


>gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila
           WSU 86-1044]
 gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila
           WSU 86-1044]
          Length = 165

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + ++I   +   K +++ ++ L+ G  I    R ++   L  NG  +   EL +VG+N
Sbjct: 97  NDIPLSIILEVGRLKMSMQTLMDLQPGNTIELDIRPESGIDLVVNGSRVAKGELLQVGEN 156

Query: 296 YTIRITD 302
             IRI +
Sbjct: 157 LGIRILE 163


>gi|311087551|gb|ADP67630.1| flagellar motor switch protein FliM [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 183

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 1/133 (0%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
           G+  +     KI   +   +     K F   +   V++   S + G  +           
Sbjct: 7   GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 66

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
            +   +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  
Sbjct: 67  LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 126

Query: 142 ISAVLNQCISTTQ 154
           I+   ++      
Sbjct: 127 ITNAFSEIYKKYF 139


>gi|311085822|gb|ADP65904.1| flagellar motor switch protein FliM [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 178

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 1/133 (0%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
           G+  +     KI   +   +     K F   +   V++   S + G  +           
Sbjct: 2   GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 61

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
            +   +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  
Sbjct: 62  LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 121

Query: 142 ISAVLNQCISTTQ 154
           I+   ++      
Sbjct: 122 ITNAFSEIYKKYF 134


>gi|170021378|ref|YP_001726332.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           ATCC 8739]
 gi|218703507|ref|YP_002411026.1| lateral flagellar motor switch C ring FliN-like protein
           [Escherichia coli UMN026]
 gi|256020210|ref|ZP_05434075.1| Lateral flagellar export/assembly protein, Flagellar motor switch
           (C ring) (FliN-like) [Shigella sp. D9]
 gi|260853449|ref|YP_003227340.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli O26:H11 str. 11368]
 gi|260866395|ref|YP_003232797.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli O111:H- str. 11128]
 gi|300817290|ref|ZP_07097508.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           107-1]
 gi|300898059|ref|ZP_07116428.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           198-1]
 gi|301646792|ref|ZP_07246646.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           146-1]
 gi|307136839|ref|ZP_07496195.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli H736]
 gi|307315215|ref|ZP_07594794.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|59889763|emb|CAH19118.1| Lateral flagellar export/assembly protein (FliN-like) [Escherichia
           coli]
 gi|169756306|gb|ACA79005.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           ATCC 8739]
 gi|218430604|emb|CAR11470.1| Lateral flagellar export/assembly protein, Flagellar motor switch
           (C ring) (FliN-like) [Escherichia coli UMN026]
 gi|257752098|dbj|BAI23600.1| predicted lateral flagellar motor switching and energizing
           component [Escherichia coli O26:H11 str. 11368]
 gi|257762751|dbj|BAI34246.1| predicted lateral flagellar motor switching and energizing
           component [Escherichia coli O111:H- str. 11128]
 gi|284920027|emb|CBG33083.1| lateral flagellar export/assembly protein (FliN-like) [Escherichia
           coli 042]
 gi|300358237|gb|EFJ74107.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           198-1]
 gi|300530266|gb|EFK51328.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           107-1]
 gi|301075027|gb|EFK89833.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           146-1]
 gi|306905396|gb|EFN35933.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|315059470|gb|ADT73797.1| Lateral flagellar C-ring switch protein [Escherichia coli W]
 gi|315616846|gb|EFU97463.1| flagellar motor switch family protein [Escherichia coli 3431]
 gi|323158012|gb|EFZ44113.1| surface presentation of antigens family protein [Escherichia coli
           EPECa14]
 gi|323178513|gb|EFZ64091.1| surface presentation of antigens family protein [Escherichia coli
           1180]
 gi|323181528|gb|EFZ66948.1| surface presentation of antigens family protein [Escherichia coli
           1357]
 gi|323191517|gb|EFZ76778.1| surface presentation of antigens family protein [Escherichia coli
           RN587/1]
 gi|323379972|gb|ADX52240.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           KO11]
          Length = 123

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   ++  +  L D++ +    VI           +  N   +   E+  
Sbjct: 42  MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101

Query: 292 VGKNYTIRITD 302
           V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112


>gi|327254533|gb|EGE66149.1| lateral flagellar export/assembly protein [Escherichia coli
           STEC_7v]
          Length = 283

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  S F +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESRFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|163744332|ref|ZP_02151692.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
 gi|161381150|gb|EDQ05559.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
          Length = 154

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 7/74 (9%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +   +  +  ++ L  G ++    +      L  + + +   +L +V
Sbjct: 76  NAMLNVGLDVQIVLGQARMPISRLLELTRGSIVELNRKIGAPVDLMVSDRLVARGDLVKV 135

Query: 293 G-KNYTIRITDRIN 305
           G     + +T  + 
Sbjct: 136 GEDRLGVSLTQIVK 149


>gi|170680472|ref|YP_001742354.1| lateral flagellar export/assembly protein LfiM [Escherichia coli
           SMS-3-5]
 gi|300936107|ref|ZP_07151047.1| surface presentation of antigens protein [Escherichia coli MS 21-1]
 gi|170518190|gb|ACB16368.1| lateral flagellar export/assembly protein LfiM [Escherichia coli
           SMS-3-5]
 gi|300458727|gb|EFK22220.1| surface presentation of antigens protein [Escherichia coli MS 21-1]
          Length = 283

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  SSF +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|84502360|ref|ZP_01000496.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
 gi|84389172|gb|EAQ01969.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
          Length = 128

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 7/74 (9%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +NI   +   +  +  ++ L  G +I    +      +  N + +   +L ++
Sbjct: 49  DAMLNVGLNIQIVLGRTRMPISQLLKLSRGSIIELDKKIGEPVDIVINDRLVARGDLVKL 108

Query: 293 G-KNYTIRITDRIN 305
             +   + + + + 
Sbjct: 109 DEERVGVSLIEIVK 122


>gi|283784011|ref|YP_003363876.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
           ICC168]
 gi|282947465|emb|CBG87012.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
           ICC168]
          Length = 123

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 27/73 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             ++ V +   ++  +  L D++ +    VI           +  N   +   E+  V +
Sbjct: 45  LKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVVVNE 104

Query: 295 NYTIRITDRINFD 307
            Y +R+ +    +
Sbjct: 105 KYGLRVLEFNTQE 117


>gi|331671783|ref|ZP_08372579.1| flagellar switch protein [Escherichia coli TA280]
 gi|331070772|gb|EGI42131.1| flagellar switch protein [Escherichia coli TA280]
          Length = 127

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   ++  +  L D++ +    VI           +  N   +   E+  
Sbjct: 46  MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105

Query: 292 VGKNYTIRITD 302
           V + Y +R+ +
Sbjct: 106 VNEKYGLRVLE 116


>gi|323171042|gb|EFZ56691.1| surface presentation of antigens family protein [Escherichia coli
           LT-68]
          Length = 123

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   ++  +  L D++ +    VI           +  N   +   E+  
Sbjct: 42  MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101

Query: 292 VGKNYTIRITD 302
           V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112


>gi|225850265|ref|YP_002730499.1| flagellar motor switch phosphatase FliY [Persephonella marina
           EX-H1]
 gi|225646313|gb|ACO04499.1| flagellar motor switch phosphatase FliY [Persephonella marina
           EX-H1]
          Length = 79

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K    +++TLK G +I      +    L    +     EL    +
Sbjct: 10  LKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGELIVANE 69

Query: 295 NYTIRITD 302
            Y IR+ D
Sbjct: 70  KYGIRVVD 77


>gi|83646013|ref|YP_434448.1| flagellar motor switch/type III secretory pathway protein [Hahella
           chejuensis KCTC 2396]
 gi|83634056|gb|ABC30023.1| Flagellar motor switch/type III secretory pathway protein [Hahella
           chejuensis KCTC 2396]
          Length = 397

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            + L V +   +  +  TL  + +L  GQ I           L    + I   EL +VG 
Sbjct: 300 LHDLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTLLVQSQAIAEAELVQVGD 359

Query: 295 NYTIRITD 302
               RIT 
Sbjct: 360 QIGARITR 367


>gi|260429524|ref|ZP_05783501.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
 gi|260420147|gb|EEX13400.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
          Length = 95

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
           + + I   +   +  ++D++ L  G V+    R +    L    + I    L    G   
Sbjct: 19  VPIEITVSVGRARPLVRDLLKLGEGSVLTLDKRLEDPVELYVGDRLIGIGALEVLEGGEN 78

Query: 294 KNYTIRITDRIN 305
               +R+T+ ++
Sbjct: 79  GQLAVRLTEVVD 90


>gi|291532052|emb|CBK97637.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium
           siraeum 70/3]
          Length = 400

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 1/88 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           PQ  +          ++       +  +        + + I   I   K  +KD++    
Sbjct: 312 PQPAVNYRNAQLAQFESFEAPLGSEQKENLQ-LLMDVPLQISVEIGSTKKKIKDILEFSQ 370

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCEL 289
           G +I    +      +  NG  I   ++
Sbjct: 371 GTIIELERQAGAPVDVMVNGNLIARGDV 398


>gi|332162917|ref|YP_004299494.1| flagellar switch protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667147|gb|ADZ43791.1| Flagellar switch protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862338|emb|CBX72498.1| flagellar motor switch protein fliN [Yersinia enterocolitica
           W22703]
          Length = 129

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ V +   +      L +++++    VI           +  NG      E+  V + 
Sbjct: 52  SRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVNEK 111

Query: 296 YTIRI 300
           Y +RI
Sbjct: 112 YGLRI 116


>gi|293403338|ref|ZP_06647429.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
 gi|298378949|ref|ZP_06988830.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
 gi|331640695|ref|ZP_08341842.1| flagellar switch protein [Escherichia coli H736]
 gi|331645398|ref|ZP_08346502.1| flagellar switch protein [Escherichia coli M605]
 gi|331666528|ref|ZP_08367402.1| flagellar switch protein [Escherichia coli TA271]
 gi|332281372|ref|ZP_08393785.1| lateral flagellar export/assembly protein [Shigella sp. D9]
 gi|291429191|gb|EFF02211.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
 gi|298280062|gb|EFI21566.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
 gi|331040069|gb|EGI12277.1| flagellar switch protein [Escherichia coli H736]
 gi|331045560|gb|EGI17686.1| flagellar switch protein [Escherichia coli M605]
 gi|331065752|gb|EGI37636.1| flagellar switch protein [Escherichia coli TA271]
 gi|332103724|gb|EGJ07070.1| lateral flagellar export/assembly protein [Shigella sp. D9]
          Length = 127

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   ++  +  L D++ +    VI           +  N   +   E+  
Sbjct: 46  MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105

Query: 292 VGKNYTIRITD 302
           V + Y +R+ +
Sbjct: 106 VNEKYGLRVLE 116


>gi|145284339|gb|ABP51920.1| AscQ [Aeromonas veronii bv. sobria]
          Length = 308

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 26/76 (34%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +  QL + +   +  +      + +L+ G +I           + +NG  +    L  +
Sbjct: 232 TELEQLPIQVSFEVGRQTLDWHTLTSLQPGALIDLDTPLDGEVRIISNGHSLGVGRLVEI 291

Query: 293 GKNYTIRITDRINFDQ 308
                +R+    N  Q
Sbjct: 292 QGRLGVRVERLDNESQ 307



 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVI--PFLHREKTCAILSANGKEIYSCEL 289
            + +  +      T+ ++ TL IG V+  P   +     ++   G+    C+ 
Sbjct: 158 PLTLSLQWGEMGLTMDELATLAIGDVLLPPPHPQLGQQLLICVEGRPFAYCQP 210


>gi|116626496|ref|YP_828652.1| surface presentation of antigens (SPOA) protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229658|gb|ABJ88367.1| surface presentation of antigens (SPOA) protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 82

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I+  ++ +  T +DV+ L+ G VI           +   G    S E+  +  
Sbjct: 10  LGDVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSGEIVVIEN 69

Query: 295 NYTIRITD 302
              +RITD
Sbjct: 70  TLGVRITD 77


>gi|293408349|ref|ZP_06652188.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471527|gb|EFF14010.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 127

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++ V +   ++  +  L D++ +    VI           +  N   +   E+  
Sbjct: 46  MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105

Query: 292 VGKNYTIRITD 302
           V + Y +R+ +
Sbjct: 106 VNEKYGLRVLE 116


>gi|157147124|ref|YP_001454443.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
 gi|157084329|gb|ABV14007.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
          Length = 132

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 25/67 (37%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ V +   +     +L +++++    V+           +  NG      E+  +   
Sbjct: 55  SRIPVTLTLEVASVNISLAELMSVNSDSVVELDKMAGEPLDIKVNGILFGKAEVVVLNDK 114

Query: 296 YTIRITD 302
           Y +RI +
Sbjct: 115 YGLRIIE 121


>gi|331671784|ref|ZP_08372580.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli TA280]
 gi|331070773|gb|EGI42132.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli TA280]
          Length = 283

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  SSF +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPTLIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|56695120|ref|YP_165467.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
 gi|56676857|gb|AAV93523.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
          Length = 109

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            +   +                + + I   +   +  ++D++ L    V+    R +   
Sbjct: 10  PKRYRDMSDPQKPIEAKNPFNSVPIEITVSVGRARPLIRDLIGLGENAVLTLDKRVEDPV 69

Query: 276 ILSANGKEIYSCEL----GRVGKNYTIRITDR 303
            L    + +   +L    G       +R+T+ 
Sbjct: 70  DLYVGDRLVARGQLEELTGEQAGQLAVRLTEI 101


>gi|323191518|gb|EFZ76779.1| lateral flagellar export/assembly protein [Escherichia coli
           RN587/1]
          Length = 283

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 66/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKSHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  SSF +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           + + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSMPLTLNVKIAELSLNVADLAQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|293408350|ref|ZP_06652189.1| predicted protein [Escherichia coli B354]
 gi|291471528|gb|EFF14011.1| predicted protein [Escherichia coli B354]
          Length = 283

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKDHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  SSF +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSLNVADLAQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|114764046|ref|ZP_01443285.1| flagellar motor switch protein FliN [Pelagibaca bermudensis
           HTCC2601]
 gi|114543404|gb|EAU46419.1| flagellar motor switch protein FliN [Roseovarius sp. HTCC2601]
          Length = 95

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
           + + I   +   +  ++D++ L  G V+    R +    L    + I    L    G   
Sbjct: 19  VPIEITVSVGRARPLVRDLLKLGAGSVLTLDKRLEDPVELYVGDRLIGIGALEVVDGGEN 78

Query: 294 KNYTIRITDRIN 305
               +R+T+ ++
Sbjct: 79  GQLAVRLTEVVD 90


>gi|167574618|ref|ZP_02367492.1| hypothetical protein BoklC_32595 [Burkholderia oklahomensis C6786]
          Length = 324

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 48/169 (28%), Gaps = 12/169 (7%)

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E++ A++    +  V   C        P      D    +   +          ++   
Sbjct: 161 TERRFARKVATNLVRVTAHC------IDPAATRADDAPIPRAAAHSRHPVLFVACDVEDA 214

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           +          + +    +      + Q +     +      A       + +  ++  +
Sbjct: 215 LRRTVGEIQFALDEGWQQRLFAGLTAGQRRGAPARKQ-PRLLAGALR---IRLTAQLMER 270

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           +    D++ LK G V+P        A + A   ++YS  +        +
Sbjct: 271 RIPFGDLLHLKPGSVLPVRLHAN--ARVLAGDSQLYSASIVEHNGKLCL 317


>gi|261341514|ref|ZP_05969372.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
 gi|288316312|gb|EFC55250.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
          Length = 133

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 27/72 (37%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ V +   +   + +L +++T+    VI           +  NG      E   +   
Sbjct: 56  SRIPVTLTLEVASVEVSLAELMTVGHDSVIELDKMAGEPLDIKVNGILFGKAEAVVLNDK 115

Query: 296 YTIRITDRINFD 307
           Y +RI +  + +
Sbjct: 116 YGLRILEFNSKE 127


>gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
 gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
          Length = 119

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio
           ammonificans HB-1]
 gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio
           ammonificans HB-1]
          Length = 83

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
              ++L +    +   + + I   +  K      V+ LK G +I    +      ++ N 
Sbjct: 2   EVEKELTEKL-ERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLND 60

Query: 282 KEIYSCELGRVGKNYTIRITDRI 304
           +E    EL  +    ++R+ D +
Sbjct: 61  QEFGIGELIVINDKVSLRLVDLV 83


>gi|251789494|ref|YP_003004215.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae
           Ech1591]
 gi|247538115|gb|ACT06736.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae
           Ech1591]
          Length = 387

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +  R      TL+D+  L  G V+         A L    + +   EL  V     ++
Sbjct: 311 LALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEATLYHGEQPLALGELVDVEGRLGLQ 370

Query: 300 ITDRINFDQKS 310
           IT R+  D + 
Sbjct: 371 ITRRLGVDGEI 381


>gi|301646793|ref|ZP_07246647.1| surface presentation of antigens protein [Escherichia coli MS
           146-1]
 gi|301075028|gb|EFK89834.1| surface presentation of antigens protein [Escherichia coli MS
           146-1]
          Length = 283

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  S F +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAYTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|307136840|ref|ZP_07496196.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           H736]
 gi|331640696|ref|ZP_08341843.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli H736]
 gi|331040070|gb|EGI12278.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli H736]
          Length = 283

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  S F +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|170021377|ref|YP_001726331.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           ATCC 8739]
 gi|188494740|ref|ZP_03002010.1| lateral flagellar export/assembly protein [Escherichia coli 53638]
 gi|169756305|gb|ACA79004.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           ATCC 8739]
 gi|188489939|gb|EDU65042.1| lateral flagellar export/assembly protein [Escherichia coli 53638]
          Length = 283

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  S F +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
 gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus
           NVH0597-99]
 gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus
           H3081.97]
 gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187]
 gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
 gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
 gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
           10987]
 gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus
           NVH0597-99]
 gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus
           H3081.97]
 gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH187]
 gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1]
 gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
 gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
          Length = 119

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 119

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99


>gi|323975947|gb|EGB71041.1| lfiM protein [Escherichia coli TW10509]
          Length = 283

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  S F +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESRFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQVKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|254973889|ref|ZP_05270361.1| flagellar motor switch protein [Clostridium difficile QCD-66c26]
 gi|255091274|ref|ZP_05320752.1| flagellar motor switch protein [Clostridium difficile CIP 107932]
 gi|255305249|ref|ZP_05349421.1| flagellar motor switch protein [Clostridium difficile ATCC 43255]
 gi|255312933|ref|ZP_05354516.1| flagellar motor switch protein [Clostridium difficile QCD-76w55]
 gi|255515692|ref|ZP_05383368.1| flagellar motor switch protein [Clostridium difficile QCD-97b34]
 gi|255648786|ref|ZP_05395688.1| flagellar motor switch protein [Clostridium difficile QCD-37x79]
 gi|260682006|ref|YP_003213291.1| flagellar motor switch protein [Clostridium difficile CD196]
 gi|260685604|ref|YP_003216737.1| flagellar motor switch protein [Clostridium difficile R20291]
 gi|306518903|ref|ZP_07405250.1| flagellar motor switch protein [Clostridium difficile QCD-32g58]
 gi|260208169|emb|CBA60487.1| flagellar motor switch protein [Clostridium difficile CD196]
 gi|260211620|emb|CBE01855.1| flagellar motor switch protein [Clostridium difficile R20291]
          Length = 104

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +  +   VN+   I     T+K+++ LK G +I           + AN +     E   
Sbjct: 27  NQNVFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESII 86

Query: 292 VGKNYTIRITDRINFD 307
             +  ++R++   + D
Sbjct: 87  TNEKLSVRLSKIEDSD 102


>gi|255099392|ref|ZP_05328369.1| flagellar motor switch protein [Clostridium difficile QCD-63q42]
          Length = 104

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +  +   VN+   I     T+K+++ LK G +I           + AN +     E   
Sbjct: 27  NQNVFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESII 86

Query: 292 VGKNYTIRITDRINFD 307
             +  ++R++   + D
Sbjct: 87  TNERLSVRLSKIEDPD 102


>gi|110632471|ref|YP_672679.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp.
           BNC1]
 gi|110283455|gb|ABG61514.1| surface presentation of antigens (SPOA) protein [Chelativorans sp.
           BNC1]
          Length = 354

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 222 NQSEDLID----------PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
               D  +          P A     L V +D   + ++ TL+++  L  G  +      
Sbjct: 254 EIDSDWSEFGAGAIYDEPPLADPIEDLPVRLDFLFSTQRITLEELRALGPGATLRLNVDL 313

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                + ANG       L ++G +  ++++ 
Sbjct: 314 TRPVTILANGAPAGRGYLVQIGDHMGVQLSH 344


>gi|34498061|ref|NP_902276.1| translocation protein in type III secretion [Chromobacterium
           violaceum ATCC 12472]
 gi|34103916|gb|AAQ60276.1| translocation protein in type III secretion [Chromobacterium
           violaceum ATCC 12472]
          Length = 290

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/163 (9%), Positives = 47/163 (28%), Gaps = 5/163 (3%)

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-----NVASSFVL 199
            +++  +        +  +  ++        + +  +   + ++        N      L
Sbjct: 126 EMDETETAITAGVSLIAGWSMVEMASVRKLVVGDALLLRYSFDVAAGKFGLFNRQPIASL 185

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           +   ET + T    +S      + +  L     +      + +   +   +  L  +  L
Sbjct: 186 MQDGETGIFTVETLMSDFEDWMDITPTLSPAEEQALGDAMITVTVEVAKMELPLHQLGNL 245

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           + G ++           L A  + I    L  +     +RI  
Sbjct: 246 QPGTLLSSAVSSDGLVTLKAGSRPIARGTLLDIDSRLAVRIEH 288


>gi|307131229|ref|YP_003883245.1| HrcQ [Dickeya dadantii 3937]
 gi|306528758|gb|ADM98688.1| HrcQ [Dickeya dadantii 3937]
          Length = 382

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +  R      TL+D+  L  G V+         A L    + +   EL  V     ++
Sbjct: 306 LALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEATLYHGEQPLALGELVDVEGRLGLQ 365

Query: 300 ITDRINFDQKS 310
           IT R+  D   
Sbjct: 366 ITRRLGVDGDI 376


>gi|256020211|ref|ZP_05434076.1| surface presentation of antigens (SPOA) protein [Shigella sp. D9]
 gi|260853450|ref|YP_003227341.1| putative lateral flagellar export/assembly protein [Escherichia
           coli O26:H11 str. 11368]
 gi|260866396|ref|YP_003232798.1| putative lateral flagellar export/assembly protein [Escherichia
           coli O111:H- str. 11128]
 gi|300817289|ref|ZP_07097507.1| surface presentation of antigens protein [Escherichia coli MS
           107-1]
 gi|307315214|ref|ZP_07594793.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|331666529|ref|ZP_08367403.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli TA271]
 gi|332281373|ref|ZP_08393786.1| lateral flagellar export/assembly protein [Shigella sp. D9]
 gi|257752099|dbj|BAI23601.1| predicted lateral flagellar export/assembly protein [Escherichia
           coli O26:H11 str. 11368]
 gi|257762752|dbj|BAI34247.1| predicted lateral flagellar export/assembly protein [Escherichia
           coli O111:H- str. 11128]
 gi|300530265|gb|EFK51327.1| surface presentation of antigens protein [Escherichia coli MS
           107-1]
 gi|306905395|gb|EFN35932.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|315059471|gb|ADT73798.1| Lateral flagellar C-ring switch protein [Escherichia coli W]
 gi|323158011|gb|EFZ44112.1| lateral flagellar export/assembly protein [Escherichia coli
           EPECa14]
 gi|323178512|gb|EFZ64090.1| lateral flagellar export/assembly protein [Escherichia coli 1180]
 gi|323181529|gb|EFZ66949.1| lateral flagellar export/assembly protein [Escherichia coli 1357]
 gi|323379971|gb|ADX52239.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           KO11]
 gi|331065753|gb|EGI37637.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli TA271]
 gi|332103725|gb|EGJ07071.1| lateral flagellar export/assembly protein [Shigella sp. D9]
          Length = 283

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  S F +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|188997537|ref|YP_001931788.1| surface presentation of antigens (SPOA) protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932604|gb|ACD67234.1| surface presentation of antigens (SPOA) protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 87

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            +K     E            +N+ I   +   K   + ++ LK G +I      +    
Sbjct: 1   MHKDMEVDEIYKK--ISLIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVN 58

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +    +++   EL  V + Y +R+ D I 
Sbjct: 59  IYFLNEKVGFGELVNVNEKYGVRLVDLIK 87


>gi|167576642|ref|ZP_02369516.1| hypothetical protein BthaT_00820 [Burkholderia thailandensis TXDOH]
          Length = 297

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 52/182 (28%), Gaps = 13/182 (7%)

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
           ET         +T E++LA+R   +++  + + I       P               +  
Sbjct: 122 ETAAHAPPIPETTTERRLAERLAGELARTVARAI-------PFDARPDGETPPPDGGHAR 174

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
                    +              +      +      SS +++ +              
Sbjct: 175 RTHLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSV--RRERSLPST-- 230

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +L + +  ++        DV+ L+ G V+P        A +  +  ++++  +       
Sbjct: 231 RLRLKLTAQLMEMSVPFGDVLRLRPGTVLPVRLHA--PARVMTHDAQLFTASIAEHNGKL 288

Query: 297 TI 298
            +
Sbjct: 289 CL 290


>gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L]
 gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH820]
 gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
 gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L]
 gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH820]
 gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
 gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 119

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
 gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
          Length = 119

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 34/95 (35%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            + +SL        +  +           +++ +  ++     TL DV  LK+G V+   
Sbjct: 5   VSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVE 64

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                   +  +  ++   E   + + + I I++ 
Sbjct: 65  KNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|108763665|ref|YP_633788.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
 gi|108467545|gb|ABF92730.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
          Length = 416

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 32/99 (32%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
              +L     +   +     +++        L V+++  +      L ++  LK G ++P
Sbjct: 318 EGFSLTRAQGRGIPQESDMVVVNKQEEGMPPLPVDVEIELTRVMIPLSELAALKPGALLP 377

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                    +L    + +   EL  +      R+   + 
Sbjct: 378 LHINASEPVVLRVGDRAVARAELVEIEGEVGARVLALLP 416


>gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110]
 gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110]
          Length = 80

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 23/72 (31%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             ++ V++   +      +  V+ L  G +I     E     + AN   + S  +     
Sbjct: 4   LDKVTVDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLVDRN 63

Query: 295 NYTIRITDRINF 306
              + +   +  
Sbjct: 64  RIAVEVKQMLPR 75


>gi|114765261|ref|ZP_01444393.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542396|gb|EAU45424.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Roseovarius sp. HTCC2601]
          Length = 114

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 6/74 (8%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +N+   +   +  +  ++ L  G +I           +  N + +   +L ++
Sbjct: 35  DAMLNVGLNVQIVLGQTRMPIAQLLKLSRGSIIELDKSIGQPVEVVINDRLVARGDLVKL 94

Query: 293 -GKNYTIRITDRIN 305
                 + + + + 
Sbjct: 95  EDDRLGVSLIEIVK 108


>gi|306813323|ref|ZP_07447516.1| Lateral flagellar export/assembly protein Flagellar motor switch
           C-ring (FliM-like) [Escherichia coli NC101]
 gi|305854086|gb|EFM54525.1| Lateral flagellar export/assembly protein Flagellar motor switch
           C-ring (FliM-like) [Escherichia coli NC101]
          Length = 283

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKSHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  SSF +++       +L 
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSLNVADLAQIKAGDILPIS 243

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269


>gi|283834475|ref|ZP_06354216.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
 gi|291070022|gb|EFE08131.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
          Length = 123

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 202 PQETLLKTTLISLSSQNK-SENQSEDLIDPFARK-------TYQLNVNIDTRINLKKTTL 253
           P++ L +   ++  +    + + +E L+     +         ++ V +   ++  +  L
Sbjct: 4   PEDILEQGFELAPEATTPPAPSVTETLVARLEDRFSESMSLLKRIPVTLTLEVSSVEVML 63

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            D++ +    VI           +  N   +   E+  V + Y +R+ +
Sbjct: 64  ADLLNIDDDTVIEMDKLAGEPLDIKVNNILLGKAEVVVVNEKYGLRVLE 112


>gi|167567194|ref|ZP_02360110.1| hypothetical protein BoklE_31835 [Burkholderia oklahomensis EO147]
          Length = 341

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 49/169 (28%), Gaps = 12/169 (7%)

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E++ A++    +  V   C        P      D    +   +          ++   
Sbjct: 178 TERRFARKIATNLVRVTTHC------IDPAAMRADDAPIPRAAAHSRHPVLFVACDVEDA 231

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           +          + +    +      + Q +     +    P A       + +  ++  +
Sbjct: 232 LRRTVGKIQFALDEGWQQRLFAGLTAGQRRGAPARKQ-PRPLAGALR---IRLTAQLMER 287

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           +    D++ LK G V+P        A + A   ++YS  +        +
Sbjct: 288 RIPFGDLLHLKPGSVLPVRLHAN--ARVLAGDSQLYSASIVEHNGKLCL 334


>gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 111

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 32/74 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++D  +      +K+++TL+ G ++    +   C  +  N + +   E+  V
Sbjct: 37  DLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQLDDCVDVRLNERTVARAEIVAV 96

Query: 293 GKNYTIRITDRINF 306
              + IRI + +  
Sbjct: 97  DDRFGIRIVEIVEE 110


>gi|13475304|ref|NP_106868.1| translocation protein in type III secretion system, hrcQ
           [Mesorhizobium loti MAFF303099]
 gi|14026055|dbj|BAB52654.1| translocation protein in type III secretion system; HrcQ
           [Mesorhizobium loti MAFF303099]
          Length = 354

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 27/76 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +          L ++ +   G +       +    + ANG+ I   ++ R+
Sbjct: 279 EDLDDVEIMLVFECGRWPIPLGELRSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRI 338

Query: 293 GKNYTIRITDRINFDQ 308
           G    IR+  R+  + 
Sbjct: 339 GDTLGIRLRGRLGCND 354


>gi|15964405|ref|NP_384758.1| flagellar motor switch protein [Sinorhizobium meliloti 1021]
 gi|15073582|emb|CAC45224.1| Flagellar motor switch protein [Sinorhizobium meliloti 1021]
          Length = 210

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  
Sbjct: 131 MDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 190

Query: 292 VGK---NYTIRITDRINFDQ 308
           +      + +++ +     +
Sbjct: 191 LEGDVTRFGVKLLEIKGTKK 210


>gi|83646773|ref|YP_435208.1| flagellar motor switch protein FliM-like protein [Hahella
           chejuensis KCTC 2396]
 gi|83634816|gb|ABC30783.1| flagellar motor switch protein FliM-like protein [Hahella
           chejuensis KCTC 2396]
          Length = 252

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 23/174 (13%)

Query: 129 TVEKKLAKRTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
            V  KL  R + Q  + L +    +   E               + +    +  +     
Sbjct: 93  DVSHKLVARLVNQALSELAESWGAADPVEMESLAYAQEYASGWIQVSIAWPSASIV---- 148

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
                       L+   + + K           +       ++   R   +L+  +  R+
Sbjct: 149 ------------LLWSPKVVEKHFPAGAEFNRGALKP----LESLLRSCGELSAKLSVRL 192

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIR 299
           N  + T+ +V +L+ G VI   H+    A++   +G   +   LG      +++
Sbjct: 193 NSVELTINEVTSLQAGDVIKLDHKLTEPALVFTQDGALRFRASLGECEGRKSVK 246


>gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
 gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
 gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 119

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|126734122|ref|ZP_01749869.1| surface presentation of antigens (SPOA) protein [Roseobacter sp.
           CCS2]
 gi|126716988|gb|EBA13852.1| surface presentation of antigens (SPOA) protein [Roseobacter sp.
           CCS2]
          Length = 94

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290
            + + + I   +   +  ++D++ L    ++P   + +    +    + I   EL    G
Sbjct: 14  LHNIPIEISVTVGKARPLVRDLLQLSENAILPLDSKIEDPVEIYIGDRLIARGELQEADG 73

Query: 291 RVGKNYTIRITDR 303
                  +R+T+ 
Sbjct: 74  AEPGQLAVRLTEV 86


>gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus
           G9241]
 gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus
           G9241]
          Length = 119

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
 gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
 gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1]
          Length = 119

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|222084856|ref|YP_002543385.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
 gi|221722304|gb|ACM25460.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
          Length = 179

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + +++   +   +  +  ++ L  G +I    R      ++ NG+ I   E+  +
Sbjct: 100 DLIMDIPIDVQIVLGSSRMQVSGLMNLTEGAIIALDKRIGEPVEITVNGRCIGRGEITVL 159

Query: 293 ---GKNYTIRITD 302
                 + I++ +
Sbjct: 160 EHDDTRFGIKLIE 172


>gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
 gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
 gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
 gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
          Length = 119

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +      +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGGRNEAEKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSDIKVGIGEATVMDEKFGIIISEI 99


>gi|2916786|emb|CAA11953.1| flagellar C-ring protein [Sinorhizobium meliloti]
          Length = 198

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  
Sbjct: 119 MDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 178

Query: 292 VGK---NYTIRITDRINFDQ 308
           +      + +++ +     +
Sbjct: 179 LEGDVTRFGVKLLEIKGSKK 198


>gi|89111158|dbj|BAE80248.1| HrcQ [Acidovorax avenae subsp. avenae]
          Length = 309

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
                + V +   I+     L ++  L  G V+P     +     L  +G+ + +  L  
Sbjct: 223 ADIGGIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVV 282

Query: 292 VGKNYTIRI 300
           +G+N  +RI
Sbjct: 283 IGENLGVRI 291


>gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB108]
 gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB102]
 gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
 gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB108]
 gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB102]
 gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
          Length = 119

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|255262994|ref|ZP_05342336.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
 gi|255105329|gb|EET48003.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
          Length = 94

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK- 294
             + + +   I     T+++++ L    ++      +    +    K I   EL  +   
Sbjct: 14  SDVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDT 73

Query: 295 ---NYTIRITDRINF 306
                 +R+T+ I+ 
Sbjct: 74  NISQLAVRLTEIIDP 88


>gi|260432139|ref|ZP_05786110.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415967|gb|EEX09226.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 95

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
           + + +   +   +  ++D++ +    V+    R +    L    + +    L    G   
Sbjct: 18  IPIEVTVSVGRARPLIRDLLNMGENAVLTLDKRVEDPVDLYVGDQLVARGLLEEMEGEHA 77

Query: 294 KNYTIRITDR 303
               +R+T+ 
Sbjct: 78  GQLAVRLTEI 87


>gi|227820848|ref|YP_002824818.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
           NGR234]
 gi|227339847|gb|ACP24065.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
           NGR234]
          Length = 210

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/75 (9%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  
Sbjct: 131 MDLIMDIPIDVQIVLGTSRMQVSGLMGLTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 190

Query: 292 VGK---NYTIRITDR 303
           +      + +++ + 
Sbjct: 191 LEGDVTRFGVKLIEI 205


>gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
 gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
          Length = 109

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            +  N+D  +     TL++V+ LK G ++           +  N   + + E+  +  N+
Sbjct: 26  DIMFNLDVELGRIAMTLREVLELKEGSIVELKKTAGESVDVMVNQCLLATAEIVVIEDNF 85

Query: 297 TIR 299
            IR
Sbjct: 86  AIR 88


>gi|237755392|ref|ZP_04584019.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692433|gb|EEP61414.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 87

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            ++                  +N+ I   +   K   + ++ LK G +I      +    
Sbjct: 1   MHEDMEVDGIYKK--ISLIKDINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVN 58

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +  + ++    EL  V   Y  R+ D I 
Sbjct: 59  IYFSNEKAGFGELVNVNGKYGARLVDLIK 87


>gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
 gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
          Length = 119

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009]
 gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1]
 gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris DX-1]
 gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris
           CGA009]
 gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris TIE-1]
 gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris DX-1]
          Length = 80

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 24/76 (31%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +++V++   +      +  V+ L  G +I     E     + AN   I S  +     
Sbjct: 4   LDKVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLVDRN 63

Query: 295 NYTIRITDRINFDQKS 310
              + +   +      
Sbjct: 64  RIAVEVKQMLPRSPDR 79


>gi|310816847|ref|YP_003964811.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
           Y25]
 gi|308755582|gb|ADO43511.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
           Y25]
          Length = 98

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
             + + + +   +   + ++++++ L+   V+    R      +    + I   EL    
Sbjct: 18  ALWNVPIEVTIAVGRSRPSVRELLALEENAVLQLDRRIDDPVEIYIGDRLIARGELQESE 77

Query: 294 ---KNYTIRITDRINFDQKSL 311
                  +R+T+      + L
Sbjct: 78  DEPGQLAVRLTEVATTPGEHL 98


>gi|307311547|ref|ZP_07591188.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
 gi|307318902|ref|ZP_07598333.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
 gi|17380371|sp|O54245|FLIN_RHIME RecName: Full=Flagellar motor switch protein FliN
 gi|306895316|gb|EFN26071.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
 gi|306899564|gb|EFN30193.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
          Length = 198

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  
Sbjct: 119 MDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 178

Query: 292 VGK---NYTIRITDRINFDQ 308
           +      + +++ +     +
Sbjct: 179 LEGDVTRFGVKLLEIKGTKK 198


>gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
 gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Bacillus anthracis str. A2012]
 gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0488]
 gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0442]
 gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0193]
 gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0389]
 gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0174]
 gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. CDC 684]
 gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0248]
 gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
 gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
 gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
 gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia
           94]
 gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. Ames]
 gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis
           str. Sterne]
 gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0488]
 gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0193]
 gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0442]
 gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0389]
 gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0174]
 gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. CDC 684]
 gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0248]
          Length = 119

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18]
 gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
          Length = 80

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 24/76 (31%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +++V++   +      +  V+ L  G +I     E     + AN   I S  +     
Sbjct: 4   LDKVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLVDRN 63

Query: 295 NYTIRITDRINFDQKS 310
              + +   +      
Sbjct: 64  RIAVEVKRMLPRSPDR 79


>gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0465]
 gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0465]
          Length = 119

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|209964576|ref|YP_002297491.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|15077432|gb|AAK83160.1|AF332661_1 lateral flagellum motor switch protein FliNL [Rhodospirillum
           centenum]
 gi|209958042|gb|ACI98678.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 103

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/89 (11%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                  Q + +    +L +      Y   V +   +      ++D++ L  G ++    
Sbjct: 7   IDAMFGGQAEPKKADSELPE--ISAIYDTEVEVSVVLGTSTIRVRDLLKLGRGAIVELDR 64

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298
           +    + +  +G+ +   E+  V     +
Sbjct: 65  KIDDLSDIIVSGRMVGRGEVTIVEDKIAV 93


>gi|46398253|gb|AAS91807.1| AscQ [Aeromonas hydrophila]
          Length = 308

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 24/69 (34%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +  QL + +   +  +      + +++ G +I           + +NG  +    L  +
Sbjct: 232 TELEQLPIQVSFEVGRQTLDWHTLTSMQPGALIDLGTPLDGEVRIISNGHSLGVGRLVEI 291

Query: 293 GKNYTIRIT 301
                +RI 
Sbjct: 292 QGRLGVRIE 300



 Score = 35.8 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 245 RINLKKTTLKDVVTLKIGQVI--PFLHREKTCAILSANGKEIYSCEL 289
           +      T+ ++  L IG V+  P   +      +   G+    C+ 
Sbjct: 164 QWGEMGLTMDELGALAIGDVLLPPPHPQLGQQLTICVEGRPFAYCQP 210


>gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 80

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 25/76 (32%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +++V++   +      +  V+ L  G +I     E+    +  N   I S  +     
Sbjct: 4   LDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMVNRN 63

Query: 295 NYTIRITDRINFDQKS 310
             T+ +   +      
Sbjct: 64  RITVEVKQMLPRAPDR 79


>gi|325519944|gb|EGC99199.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. TJI49]
          Length = 134

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 4/126 (3%)

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
                  I    +   +    +  +P   L  T   +  +     + +       +R   
Sbjct: 2   PAVPAWEITGRPSGNRLTVQRIREMP---LEPTRTDTSHTGAPDVSGAAASTGDTSRPLD 58

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKN 295
            L V++   +      L ++  L+ G VI            L ANG  I + +L  VG+ 
Sbjct: 59  GLAVDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGQLIAVGQK 118

Query: 296 YTIRIT 301
             +R+ 
Sbjct: 119 LGVRVV 124


>gi|218703508|ref|YP_002411027.1| lateral flagellar motor switch C-ring FliM-like protein
           [Escherichia coli UMN026]
 gi|293403339|ref|ZP_06647430.1| predicted protein [Escherichia coli FVEC1412]
 gi|298378950|ref|ZP_06988831.1| flagellar motor switch protein FliM [Escherichia coli FVEC1302]
 gi|300898058|ref|ZP_07116427.1| surface presentation of antigens protein [Escherichia coli MS
           198-1]
 gi|59889764|emb|CAH19119.1| Lateral flagellar export/assembly protein (FliM-like) [Escherichia
           coli]
 gi|218430605|emb|CAR11471.1| Lateral flagellar export/assembly protein Flagellar motor switch
           C-ring (FliM-like) [Escherichia coli UMN026]
 gi|284920028|emb|CBG33084.1| lateral flagellar export/assembly protein (FliM-like) [Escherichia
           coli 042]
 gi|291429192|gb|EFF02212.1| predicted protein [Escherichia coli FVEC1412]
 gi|298280063|gb|EFI21567.1| flagellar motor switch protein FliM [Escherichia coli FVEC1302]
 gi|300358236|gb|EFJ74106.1| surface presentation of antigens protein [Escherichia coli MS
           198-1]
          Length = 283

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 66/207 (31%), Gaps = 16/207 (7%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 76  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET--LLKT 209
           +       L+    I +           +   +   +  +  +S  +L+    T  +L  
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLADDEESSFRILLDDAHTDFILNL 184

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
              S  S+ +   +S +           L + ++ +I      + D+  +K G ++P   
Sbjct: 185 IRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSLNVADLTQIKAGDILPISL 244

Query: 270 REKTCAILSANGKEIYSCELGRVGKNY 296
            E     +     E++S  +       
Sbjct: 245 GETFPVAI--GQSELFSALIVEDKDKL 269


>gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5]
 gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB5]
          Length = 80

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 24/76 (31%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +++V++   +      +  V+ L  G +I     E     + AN   I S  +     
Sbjct: 4   LDKVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLVDRN 63

Query: 295 NYTIRITDRINFDQKS 310
              + +   +      
Sbjct: 64  RIAVEVKQMLTRSPDR 79


>gi|315616845|gb|EFU97462.1| lateral flagellar export/assembly protein [Escherichia coli 3431]
 gi|323171043|gb|EFZ56692.1| lateral flagellar export/assembly protein [Escherichia coli LT-68]
          Length = 249

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++ LL N  G          +  L +  E +L  R    I  ++    +
Sbjct: 42  GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 101

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
           +       L+    I +           +   +   +   +  S F +++       +L 
Sbjct: 102 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 149

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S+ +   +S +           L + ++ +I      + D+  +K G ++P  
Sbjct: 150 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 209

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
             E     +     E++S  +       
Sbjct: 210 LGETFPVAI--GQSELFSALIVEDKDKL 235


>gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
 gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
          Length = 119

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  ++          +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEDFAGKRNEMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|146278776|ref|YP_001168935.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557017|gb|ABP71630.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 88

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GR 291
            Q+ + I   +   +  +++++ L+   V+    R      L    + I   EL    G 
Sbjct: 10  SQVPIEITISVGRARPPVRELLKLQRDAVLALDRRVDDPVDLYVGDRLIGRGELTELEGD 69

Query: 292 VGKNYTIRITDRIN 305
                 +R+T+  N
Sbjct: 70  QAGQLAVRLTEVAN 83


>gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
 gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
 gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
 gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis
           KBAB4]
 gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
 gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
          Length = 119

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99


>gi|171915735|ref|ZP_02931205.1| type III secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 342

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
             T     L            +    +P A    QL V +   +     TL+ + +L  G
Sbjct: 240 AATWQDKKLTIQQFIMSDPAPTPAATEPLA-LVDQLEVELTFLVGTHAATLEQLRSLAPG 298

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             I           + ANG+ I   EL  +G    +RIT+
Sbjct: 299 ACIELPTPASQAVTICANGRAIGKGELLDIGNRIGVRITE 338


>gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
 gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH1134]
 gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264]
 gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus
           G9842]
 gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           200]
 gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
 gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
 gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
 gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
 gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
 gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
 gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
 gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
 gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
 gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
 gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH1134]
 gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus
           B4264]
 gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus
           G9842]
 gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
 gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
 gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
 gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
 gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
 gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
 gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
 gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
 gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
 gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           200]
 gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 119

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|330953281|gb|EGH53541.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 85

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +  ++   + TL  +  +  G V+PF  +      L  NG+ I   EL  +G    +R+
Sbjct: 20  TLICQLGSMELTLAQLREMAPGSVLPFTSQAHDEVDLMVNGRRIGRGELVTIGDGLGVRL 79


>gi|86749492|ref|YP_485988.1| hypothetical protein RPB_2372 [Rhodopseudomonas palustris HaA2]
 gi|86572520|gb|ABD07077.1| Surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris HaA2]
          Length = 80

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 23/76 (30%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              ++V++   +      +  V+ L  G +I     E     + AN   + S  +     
Sbjct: 4   LDNVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPVASGVVLVDRN 63

Query: 295 NYTIRITDRINFDQKS 310
              + +   +      
Sbjct: 64  RIAVEVKQMLTRSPDR 79


>gi|326315334|ref|YP_004233006.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372170|gb|ADX44439.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 373

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
                + V +   I+     L ++  L  G V+P     +     L  +G+ + +  L  
Sbjct: 287 ADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVV 346

Query: 292 VGKNYTIRI 300
           +G++  +RI
Sbjct: 347 IGESLGVRI 355


>gi|283836562|ref|ZP_06356303.1| putative surface presentation of antigens protein [Citrobacter
           youngae ATCC 29220]
 gi|291067491|gb|EFE05600.1| putative surface presentation of antigens protein [Citrobacter
           youngae ATCC 29220]
          Length = 250

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 13/172 (7%)

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
                + L    S     S  L   +     ++    +    V  +  ++     +    
Sbjct: 84  FTHGWSALASA-SVQPRLSCPLILGWQELTYEQLRTCVPG-AVLILPSHLEFGEKS---- 137

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTT 252
                    +  L     +       +++ D   +          + + +   +     T
Sbjct: 138 -CWLLAAETRIKLFIEQGKYTVSEIEQNVEDHIVQSHSPLNSLGDVRITLTFEVGCTSLT 196

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
             ++ +LK+G V+        C  L ANG    S  L  +G    +RI   +
Sbjct: 197 FAELASLKVGDVLTADVLLNNCVKLRANGSVFASGNLLMLGDTPAVRIDKLL 248


>gi|237678818|emb|CAQ57545.1| RhcQ protein [Bradyrhizobium elkanii]
          Length = 371

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 28/77 (36%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 L + +         ++  + ++  G V            + ANG+ I   ++ R
Sbjct: 295 EADIDSLEITLVFECGRWPMSIGTLRSINEGHVFELGRSLDGPVDILANGQRIGRGDIVR 354

Query: 292 VGKNYTIRITDRINFDQ 308
           +G+   +R+  R+  + 
Sbjct: 355 IGEELAVRLRGRLTVND 371


>gi|222082188|ref|YP_002541553.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Agrobacterium radiobacter K84]
 gi|221726867|gb|ACM29956.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Agrobacterium radiobacter K84]
          Length = 336

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 26/67 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   I   +  L ++ ++  G V P    ++    +   G+ I   E+  +  
Sbjct: 266 IGDIPVKLVFDIARIELPLSELESIAEGHVFPLDRPKQDAVEIVTQGRIIGRGEIVTLDG 325

Query: 295 NYTIRIT 301
              +R+T
Sbjct: 326 LTAVRVT 332


>gi|75763361|ref|ZP_00743099.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228900346|ref|ZP_04064575.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           4222]
 gi|228938877|ref|ZP_04101477.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|229109220|ref|ZP_04238819.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
 gi|74489152|gb|EAO52630.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228674230|gb|EEL29475.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
 gi|228820726|gb|EEM66751.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228859233|gb|EEN03664.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           4222]
          Length = 109

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 30/86 (34%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
                +  +           +++ +  ++     TL DV  LK+G V+           +
Sbjct: 4   EDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDV 63

Query: 278 SANGKEIYSCELGRVGKNYTIRITDR 303
             +  ++   E   + + + I I++ 
Sbjct: 64  YLSNMKVGIGEAIVMDEKFGIIISEI 89


>gi|291528000|emb|CBK93586.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium
           rectale M104/1]
          Length = 192

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/185 (5%), Positives = 49/185 (26%), Gaps = 3/185 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +    I   +  +            +    +I+    +  K    +    +  +     
Sbjct: 5   SRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVPY 63

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVL 146
                    +    N  + +   ++G +   +  +    ++         +    I+  +
Sbjct: 64  TKGLDGTNLLIIKLNDALVIANLMMGGNGSNVSDMTLDEITLSAISEAMNQMCGTIATSM 123

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
           +  ++   +    L +              +   +  +   +T+ + + S  + + P   
Sbjct: 124 SSLLNEPTDIGFPLINSSYQKTFDIPDELCNGTDIVKVTFRLTVGDLIDSDLLQLYPISI 183

Query: 206 LLKTT 210
           + +  
Sbjct: 184 VKQII 188


>gi|126697799|ref|YP_001086696.1| flagellar motor switch protein [Clostridium difficile 630]
 gi|115249236|emb|CAJ67049.1| Flagellar motor switch protein FliN [Clostridium difficile]
          Length = 104

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +  +   VN+   I     T+K+++ LK G +I           + AN +     E   
Sbjct: 27  NQNVFNAKVNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESII 86

Query: 292 VGKNYTIRITDRINFD 307
             +  ++R++   + D
Sbjct: 87  TNETLSVRLSKIEDSD 102


>gi|168263750|ref|ZP_02685723.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168822288|ref|ZP_02834288.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205341310|gb|EDZ28074.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205347591|gb|EDZ34222.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320086103|emb|CBY95877.1| Secretion system apparatus protein ssaQ [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 322

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|62180009|ref|YP_216426.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127642|gb|AAX65345.1| Secretion system apparatus SsaQ [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714476|gb|EFZ06047.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 322

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 9/122 (7%)

Query: 186 MNMTIENVASSFVLI-----IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
             + +     S VL+     +  + L++     L+S +              +    +  
Sbjct: 197 FAIQLPGGIYSRVLLTEDNTMKFDELVQDIETLLASGSPMSKSDGTSSVELEQ----IPQ 252

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   I      +  +  LK G V+P          +  N + I   EL   G  + +RI
Sbjct: 253 QVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRI 312

Query: 301 TD 302
           T 
Sbjct: 313 TR 314


>gi|289805113|ref|ZP_06535742.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 275

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 199 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 258

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 259 NEFMVRITR 267


>gi|168463172|ref|ZP_02697103.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195634559|gb|EDX52911.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 322

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|255023255|ref|ZP_05295241.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J1-208]
          Length = 176

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 4/130 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
               +   ++   + K   +   +++ + +    T      F+   I +   +  +F   
Sbjct: 48  AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107

Query: 87  SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            L         I      +I + E L G + +       R LS  E+   K  + +    
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166

Query: 146 LNQCISTTQE 155
           L     +   
Sbjct: 167 LKDSFKSVHP 176


>gi|167551613|ref|ZP_02345367.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168240931|ref|ZP_02665863.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194448655|ref|YP_002045421.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197264125|ref|ZP_03164199.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|200389410|ref|ZP_03216021.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|224584071|ref|YP_002637869.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|194406959|gb|ACF67178.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197242380|gb|EDY25000.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|199601855|gb|EDZ00401.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205323619|gb|EDZ11458.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205339429|gb|EDZ26193.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|224468598|gb|ACN46428.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 322

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|145301462|ref|YP_001144301.1| type III secretion system protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|38201228|emb|CAD56763.1| ascQ protein [Aeromonas salmonicida subsp. salmonicida]
 gi|66947959|emb|CAE83096.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida]
 gi|142856344|gb|ABO92553.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 308

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 24/70 (34%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +  QL + +   +  +      + +L+ G +I           + +NG  +    L  +
Sbjct: 232 TELDQLPIQVSFEVGRQTLDWHTLTSLQPGALIDLGTPLDGEVRIISNGHLLGVGRLVEI 291

Query: 293 GKNYTIRITD 302
                +R+  
Sbjct: 292 QGRLGVRVER 301



 Score = 36.5 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 245 RINLKKTTLKDVVTLKIGQVI--PFLHREKTCAILSANGKEIYSCEL 289
           +      T+ ++ TL IG V+  P   +     ++   G+    C+ 
Sbjct: 164 QWGEMGLTMDELATLAIGDVLLPPPDPQLGQQLLICVEGRPFAYCQP 210


>gi|229102363|ref|ZP_04233071.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
 gi|228681010|gb|EEL35179.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
          Length = 109

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 31/86 (36%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
                +  ++          +++ +  ++     TL DV  LK+G V+           +
Sbjct: 4   EDFAGKRNEVSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDV 63

Query: 278 SANGKEIYSCELGRVGKNYTIRITDR 303
             +  ++   E   + + + I I++ 
Sbjct: 64  YLSNMKVGIGEAIVMDEKFGIIISEI 89


>gi|205352866|ref|YP_002226667.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857076|ref|YP_002243727.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|205272647|emb|CAR37557.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206708879|emb|CAR33209.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|309243394|gb|ADO51970.1| SsaQ [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|326627938|gb|EGE34281.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 322

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|56413611|ref|YP_150686.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362535|ref|YP_002142172.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127868|gb|AAV77374.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094012|emb|CAR59508.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 322

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|198245358|ref|YP_002215714.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197939874|gb|ACH77207.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326623461|gb|EGE29806.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 322

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|161614165|ref|YP_001588130.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363529|gb|ABX67297.1| hypothetical protein SPAB_01907 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 322

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|194445909|ref|YP_002040670.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404572|gb|ACF64794.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 322

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53]
 gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisA53]
          Length = 82

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 24/75 (32%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            +++V++   +      +  V+ L  G +I     E     + AN   + S  +      
Sbjct: 7   DKVSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASGMVLVDRNR 66

Query: 296 YTIRITDRINFDQKS 310
             + +   +      
Sbjct: 67  IAVEVKRMLPRSPDR 81


>gi|291524573|emb|CBK90160.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium
           rectale DSM 17629]
          Length = 192

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/185 (5%), Positives = 48/185 (25%), Gaps = 3/185 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +    I   +  +            +    +I+    +  K    +    +  +     
Sbjct: 5   SRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVPY 63

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVL 146
                    +    N  + +   ++G     +  +    ++         +    I+  +
Sbjct: 64  TKGLDGTNLLIIKLNDALVIANLMMGGDGSNVSDMTLDEITLSAISEAMNQMCGTIATSM 123

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
           +  ++   +    L +              +   +  +   +T+ + + S  + + P   
Sbjct: 124 SSLLNEPTDIGFPLINSSYQKTFDIPDELCNGTDIVKVTFRLTVGDLIDSDLLQLYPISI 183

Query: 206 LLKTT 210
           + +  
Sbjct: 184 VKQII 188


>gi|254702551|ref|ZP_05164379.1| Flagellar motor switch FliN protein [Brucella suis bv. 3 str. 686]
 gi|261753129|ref|ZP_05996838.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
 gi|261742882|gb|EEY30808.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
          Length = 107

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 20/57 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
                + V++   +      +  ++ L  G VI    +      +  NG+ I   E+
Sbjct: 39  DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEV 95


>gi|16760493|ref|NP_456110.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141747|ref|NP_805089.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162229|ref|ZP_03347939.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213416629|ref|ZP_03349773.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213647286|ref|ZP_03377339.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854185|ref|ZP_03382717.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289827207|ref|ZP_06545930.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25511809|pir||AB0697 probable type III secretion protein ssaQ [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502789|emb|CAD01947.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137375|gb|AAO68938.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 322

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|204927926|ref|ZP_03219127.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204323268|gb|EDZ08464.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 322

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|283784012|ref|YP_003363877.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
           ICC168]
 gi|282947466|emb|CBG87013.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
           ICC168]
          Length = 288

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 64/211 (30%), Gaps = 20/211 (9%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
            +       +L++TLL N  G            +L +  E +L  R    I A++    +
Sbjct: 76  GHLAFDIDRSLLLTLLGNFYGLDASLTEINSQDNLPTKTETRLKSRLAMDIGALIFNKNT 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET------ 205
           +    +  L+              +   +   +   +         +L+    T      
Sbjct: 136 SGVPLALKLDSS-----------TVQTHWAYQLTFVLGDNEDGGFRILLDDAHTDYILNL 184

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + ++              + +         + L + +  +I     ++ D+ T++ G ++
Sbjct: 185 IRRSEHNQGKPAADKAAVAVEKKKLVKEIIHTLPLKMQVKIAELPLSVADLATIRPGDIL 244

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           PF   +     +     E+++  +       
Sbjct: 245 PFTLPDSFPVSI--GKSELFTALIVEDKDKL 273


>gi|213581368|ref|ZP_03363194.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 244

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 168 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 227

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 228 NEFMVRITR 236


>gi|168239302|ref|ZP_02664360.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737381|ref|YP_002114431.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712883|gb|ACF92104.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197288023|gb|EDY27410.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 322

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|89111191|dbj|BAE80280.1| HrcQ [Acidovorax avenae subsp. avenae]
          Length = 309

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
                + V +   I+     L ++  L  G V+P     +     L  +G+ + +  L  
Sbjct: 223 ADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVV 282

Query: 292 VGKNYTIRI 300
           +G++  +RI
Sbjct: 283 IGESLGVRI 291


>gi|238923825|ref|YP_002937341.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
 gi|238875500|gb|ACR75207.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
          Length = 197

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/185 (5%), Positives = 49/185 (26%), Gaps = 3/185 (1%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +    I   +  +            +    +I+    +  K    +    +  +     
Sbjct: 10  SRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVPY 68

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVL 146
                    +    N  + +   ++G +   +  +    ++         +    I+  +
Sbjct: 69  TKGLDGTNLLIIKLNDALVIANLMMGGNGSNVSDMTLDEITLSAISEAMNQMCGTIATSM 128

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
           +  ++   +    L +              +   +  +   +T+ + + S  + + P   
Sbjct: 129 SSLLNEPTDIGFPLINSSYQKTFDIPDELCNGTDIVKVTFRLTVGDLIDSDLLQLYPISI 188

Query: 206 LLKTT 210
           + +  
Sbjct: 189 VKQII 193


>gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           stutzeri DSM 4166]
          Length = 279

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 73/246 (29%), Gaps = 28/246 (11%)

Query: 44  KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103
           + +   F     ++++++    Q  +               ++++              L
Sbjct: 44  RLIGDYFLRNYRINLELNRIDVQEERGEE-------PDCIYRSAM----GKVGFSIDRAL 92

Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163
           +   LE   G +           +ST E+++  R    I+ +  + I + +         
Sbjct: 93  LTEALECYYGGTVIASQDTP--PISTSEQRMRNRLGMDITDIFARSILSGETFGKLDSYR 150

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
            D +           E+V        I    SS  L +  E + + T             
Sbjct: 151 NDYEETSW-------EYVAEYEYISHITGSRSSIYLYLDTELVDELTSRLAGPPVPRLPG 203

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           +             L V +D  +   +  L  V+ L++  ++    R      +  N ++
Sbjct: 204 NPI------DHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML--RPLDRYEVRINQQK 255

Query: 284 IYSCEL 289
           ++   +
Sbjct: 256 LFRGTI 261


>gi|27376929|ref|NP_768458.1| RhcQ protein [Bradyrhizobium japonicum USDA 110]
 gi|12620525|gb|AAG60801.1|AF322012_106 RhcQ [Bradyrhizobium japonicum]
 gi|27350071|dbj|BAC47083.1| RhcQ protein [Bradyrhizobium japonicum USDA 110]
          Length = 373

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 27/77 (35%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + + +          L  + T+  G V            + ANG+ I   ++ R
Sbjct: 297 EADIDSIEITLVFECGRWPMPLGTLRTINEGHVFELGRHLDGPVDIVANGQRIGRGDIVR 356

Query: 292 VGKNYTIRITDRINFDQ 308
           +G+   +R+  R+  + 
Sbjct: 357 IGEELAVRLRGRLALND 373


>gi|159024056|gb|ABW87284.1| HrcQ [Xanthomonas fuscans subsp. fuscans]
          Length = 304

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                + + Q+ +           A    +L + +   ++    +L  +  L+ GQ++  
Sbjct: 203 MILEATPTMQHDTFEPDVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259

Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
                     L   G+ I    L  VG++  ++I   
Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296


>gi|16764768|ref|NP_460383.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167995052|ref|ZP_02576142.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|3024662|sp|P74860|SSAQ_SALTY RecName: Full=Secretion system apparatus protein SsaQ
 gi|16419939|gb|AAL20342.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205327192|gb|EDZ13956.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261246624|emb|CBG24434.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993307|gb|ACY88192.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157953|emb|CBW17448.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912403|dbj|BAJ36377.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|323129690|gb|ADX17120.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988305|gb|AEF07288.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 322

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   +      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|126730034|ref|ZP_01745846.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
 gi|126709414|gb|EBA08468.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
          Length = 95

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
           + + I   +   +  +++++ L  G V+    +      L    K I    L    G   
Sbjct: 19  VPIEITVSVGKARPLVRELLQLNEGSVLALDKQLDDPVELYVGEKLIGIGVLEVVEGDGQ 78

Query: 294 KNYTIRITDRIN 305
               +R+T+ ++
Sbjct: 79  GQLAVRLTEVVD 90


>gi|304321126|ref|YP_003854769.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis
           HTCC2503]
 gi|303300028|gb|ADM09627.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis
           HTCC2503]
          Length = 90

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL--GRV 292
            Y + + +   +   K +LK++       V+P L R      L  +G+ I + EL  G  
Sbjct: 13  LYDIELPVSVVVGRMKMSLKELSEWAPDTVVPLLSRADEPVELVVDGQVIATGELCEGDT 72

Query: 293 G-KNYTIRITDRINFDQK 309
           G ++  +RI D    + +
Sbjct: 73  GPESLALRILDLKEENAE 90


>gi|218663132|ref|ZP_03519062.1| putative flagellar motor switch protein [Rhizobium etli IE4771]
          Length = 77

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 7/76 (9%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK- 294
             + +++   +   +  +  ++ L  G  I    +      +  NG+ I   E+  +   
Sbjct: 1   MDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDND 60

Query: 295 --NYTIRITDRINFDQ 308
              + +++ + ++  +
Sbjct: 61  DTRFGVKLIEVLSTKK 76


>gi|322615098|gb|EFY12021.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619939|gb|EFY16812.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622251|gb|EFY19096.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627773|gb|EFY24563.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632882|gb|EFY29626.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636627|gb|EFY33330.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641180|gb|EFY37822.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644885|gb|EFY41418.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650279|gb|EFY46693.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655852|gb|EFY52154.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660178|gb|EFY56417.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665256|gb|EFY61444.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669513|gb|EFY65661.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673439|gb|EFY69541.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677367|gb|EFY73431.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679970|gb|EFY76009.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687442|gb|EFY83414.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194105|gb|EFZ79304.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198586|gb|EFZ83687.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202912|gb|EFZ87947.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208632|gb|EFZ93570.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211168|gb|EFZ96015.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217609|gb|EGA02324.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218958|gb|EGA03468.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223788|gb|EGA08092.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229411|gb|EGA13534.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232634|gb|EGA16730.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240328|gb|EGA24372.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242683|gb|EGA26704.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245894|gb|EGA29882.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252458|gb|EGA36305.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256477|gb|EGA40210.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260040|gb|EGA43665.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267196|gb|EGA50681.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271480|gb|EGA54901.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 322

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|134280726|ref|ZP_01767436.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|134247748|gb|EBA47832.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
          Length = 310

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%)

Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167
           G +    P     + +      E    +R   +++A L + ++       P  E      
Sbjct: 128 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 187

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
                            ++              +      +      SS +++ +   + 
Sbjct: 188 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 238

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
             P    + QL + +  ++        DV+ L+ G V+P        A +  +  ++++ 
Sbjct: 239 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 292

Query: 288 ELGRVGKNYTI 298
            +        +
Sbjct: 293 SIAEHNGKLCL 303


>gi|126445346|ref|YP_001061224.1| hypothetical protein BURPS668_A0218 [Burkholderia pseudomallei 668]
 gi|126224837|gb|ABN88342.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
          Length = 310

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%)

Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167
           G +    P     + +      E    +R   +++A L + ++       P  E      
Sbjct: 128 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 187

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
                            ++              +      +      SS +++ +   + 
Sbjct: 188 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 238

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
             P    + QL + +  ++        DV+ L+ G V+P        A +  +  ++++ 
Sbjct: 239 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 292

Query: 288 ELGRVGKNYTI 298
            +        +
Sbjct: 293 SIAEHNGKLCL 303


>gi|167743202|ref|ZP_02415976.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 14]
          Length = 213

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 135 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 193

Query: 295 NYTIRIT 301
              + + 
Sbjct: 194 QLAVEVK 200


>gi|168233613|ref|ZP_02658671.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468585|ref|ZP_03074569.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197247910|ref|YP_002146624.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|194454949|gb|EDX43788.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197211613|gb|ACH49010.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205332385|gb|EDZ19149.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 322

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   +      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
 gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
          Length = 119

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|323186822|gb|EFZ72142.1| flagellar motor switch protein fliN domain protein [Escherichia
           coli RN587/1]
          Length = 102

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 17/48 (35%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                + V +   +   + T+K+++ L  G V+           +  N
Sbjct: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102


>gi|167923337|ref|ZP_02510428.1| type III secretion system protein BsaV [Burkholderia pseudomallei
           BCC215]
          Length = 335

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 257 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 315

Query: 295 NYTIRIT 301
              + + 
Sbjct: 316 QLAVEVK 322


>gi|289806090|ref|ZP_06536719.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 74

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             S ++ ++  D   R+     + +          L  ++ LK G V+P     
Sbjct: 3   ENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPA 56


>gi|125657199|gb|ABN48687.1| hypothetical protein Bpse6_01001805 [Burkholderia pseudomallei]
          Length = 289

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%)

Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167
           G +    P     + +      E    +R   +++A L + ++       P  E      
Sbjct: 107 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 166

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
                            ++              +      +      SS +++ +   + 
Sbjct: 167 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 217

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
             P    + QL + +  ++        DV+ L+ G V+P        A +  +  ++++ 
Sbjct: 218 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 271

Query: 288 ELGRVGKNYTI 298
            +        +
Sbjct: 272 SIAEHNGKLCL 282


>gi|1526984|emb|CAA68198.1| secretion system apparatus, SsaQ [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 216

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   +      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 140 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 199

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 200 NEFMVRITR 208


>gi|134282102|ref|ZP_01768808.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
 gi|134246631|gb|EBA46719.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
          Length = 331

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 253 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 311

Query: 295 NYTIRIT 301
              + + 
Sbjct: 312 QLAVEVK 318


>gi|167725908|ref|ZP_02409144.1| hypothetical protein BpseD_43225 [Burkholderia pseudomallei DM98]
          Length = 289

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%)

Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167
           G +    P     + +      E    +R   +++A L + ++       P  E      
Sbjct: 107 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 166

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
                            ++              +      +      SS +++ +   + 
Sbjct: 167 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 217

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
             P    + QL + +  ++        DV+ L+ G V+P        A +  +  ++++ 
Sbjct: 218 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 271

Query: 288 ELGRVGKNYTI 298
            +        +
Sbjct: 272 SIAEHNGKLCL 282


>gi|167850203|ref|ZP_02475711.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei B7210]
 gi|254193901|ref|ZP_04900333.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei S13]
 gi|169650652|gb|EDS83345.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei S13]
          Length = 327

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 249 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 307

Query: 295 NYTIRIT 301
              + + 
Sbjct: 308 QLAVEVK 314


>gi|76818002|ref|YP_335737.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710b]
 gi|254264677|ref|ZP_04955542.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
 gi|76582475|gb|ABA51949.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710b]
 gi|254215679|gb|EET05064.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
          Length = 319

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 241 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 299

Query: 295 NYTIRIT 301
              + + 
Sbjct: 300 QLAVEVK 306


>gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 229

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
             ++NK      +     +    Q+ V +   +   K T++ +  +  G+VIP     + 
Sbjct: 134 AGNENKVHEHHPEDQKKSSSLCAQVPVTLTFILQKNKVTVEKLEKMYEGEVIPLEPSIEE 193

Query: 274 CAILSANGKEIYSCE-LGRVGKNYTIRITDRINFD 307
              + AN   I   + LG       + +T      
Sbjct: 194 RIEIRANNVRIARGKLLGMENGALGVELTQLYQSK 228


>gi|170738280|ref|YP_001779540.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
 gi|169820468|gb|ACA95050.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
          Length = 364

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELG 290
                +L + +   I      L  +  L+ G VI            L A G+ I   EL 
Sbjct: 285 QTSLDELELPVSFEIETVTLPLAQLSALRPGYVIELRGTLRDARIRLLAYGQLIGIGELV 344

Query: 291 RVGKNYTIRITDRINFDQ 308
            VG+   +R+ D      
Sbjct: 345 TVGEQLGVRVIDVFGSHD 362


>gi|83646772|ref|YP_435207.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
 gi|83634815|gb|ABC30782.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
          Length = 111

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 1/95 (1%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
              + L   N+     +   DP       + V +D  +     T+ ++  L    V+   
Sbjct: 16  VEEVILEPMNEGGAGDKLKSDPL-DLVKNVKVTLDVYLGDANLTVAELTALTSESVVKMN 74

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            +      L  +GK +   +L  V   + I+IT+ 
Sbjct: 75  KQLNDPIELLLDGKVVARGKLVAVDDVFGIQITET 109


>gi|238913179|ref|ZP_04657016.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 322

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   +      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 246 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|259418090|ref|ZP_05742009.1| surface presentation of antigens protein [Silicibacter sp.
           TrichCH4B]
 gi|259346996|gb|EEW58810.1| surface presentation of antigens protein [Silicibacter sp.
           TrichCH4B]
          Length = 98

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
           + V +   +   +  ++D+V L    ++    + +    L    + +   +L    G   
Sbjct: 21  VPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVARGQLEEMEGDQA 80

Query: 294 KNYTIRITDR 303
               +R+T+ 
Sbjct: 81  GQLAVRLTEI 90


>gi|226195953|ref|ZP_03791539.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pakistan 9]
 gi|225931846|gb|EEH27847.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pakistan 9]
          Length = 327

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 249 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 307

Query: 295 NYTIRIT 301
              + + 
Sbjct: 308 QLAVEVK 314


>gi|171319017|ref|ZP_02908144.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171095772|gb|EDT40725.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 329

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYS 286
                 +    +V +   + + + TL ++  L+ GQ++            +   G  +  
Sbjct: 247 EQDVTMELEDRHVELSVELAICRLTLGELANLRAGQMLRLAKAADEMSVDIRYRGTRVAR 306

Query: 287 CELGRVGKNYTIRIT 301
             L  +     +RI 
Sbjct: 307 GSLVEINGLLGVRID 321


>gi|254182911|ref|ZP_04889504.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|254299706|ref|ZP_04967155.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|157809502|gb|EDO86672.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|184213445|gb|EDU10488.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
          Length = 282

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%)

Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167
           G +    P     + +      E    +R   +++A L + ++       P  E      
Sbjct: 100 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 159

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
                            ++              +      +      SS +++ +   + 
Sbjct: 160 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 210

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
             P    + QL + +  ++        DV+ L+ G V+P        A +  +  ++++ 
Sbjct: 211 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 264

Query: 288 ELGRVGKNYTI 298
            +        +
Sbjct: 265 SIAEHNGKLCL 275


>gi|53722559|ref|YP_111544.1| surface presentation of antigens protein [Burkholderia pseudomallei
           K96243]
 gi|126458287|ref|YP_001076113.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|242311185|ref|ZP_04810202.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106b]
 gi|254186857|ref|ZP_04893373.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pasteur 52237]
 gi|52212973|emb|CAH39011.1| surface presentation of antigens protein [Burkholderia pseudomallei
           K96243]
 gi|126232055|gb|ABN95468.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|157934541|gb|EDO90211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pasteur 52237]
 gi|242134424|gb|EES20827.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106b]
          Length = 323

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 245 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 303

Query: 295 NYTIRIT 301
              + + 
Sbjct: 304 QLAVEVK 310


>gi|254511535|ref|ZP_05123602.1| Surface presentation of antigens protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221535246|gb|EEE38234.1| Surface presentation of antigens protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 95

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            +  ++++ +  +PF      + + +   +   +  ++D++ +    V+    R +    
Sbjct: 1   MSDPQSRNPEKSNPFEA----VPIEVTVSVGRARPLIRDLLNMGENAVLTLDRRIEDPVD 56

Query: 277 LSANGKEIYSCEL----GRVGKNYTIRITDR 303
           L    + +    L    G       +R+T+ 
Sbjct: 57  LYVGDQLVARGLLEEMEGDQAGQLAVRLTEI 87


>gi|296162489|ref|ZP_06845280.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. Ch1-1]
 gi|295887302|gb|EFG67129.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. Ch1-1]
          Length = 323

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILSANGKEIYSCELGRVG 293
              +    +  +     ++ ++  L+ G ++ F    +     L   G      EL  + 
Sbjct: 247 IDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTLLCQGIPFARGELIDIE 306

Query: 294 KNYTIRITDRINFD 307
               +R+T     D
Sbjct: 307 GAMGVRVTRLTQED 320


>gi|167574751|ref|ZP_02367625.1| RhcQ protein [Burkholderia oklahomensis C6786]
          Length = 104

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 26/69 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   +   +TTL ++ ++  G V+           + A+G  I   E   +G 
Sbjct: 32  LDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVTIGYGEFVEIGS 91

Query: 295 NYTIRITDR 303
              + +   
Sbjct: 92  RVAVELIRM 100


>gi|126443367|ref|YP_001063162.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
 gi|126222858|gb|ABN86363.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
          Length = 323

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 245 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 303

Query: 295 NYTIRIT 301
              + + 
Sbjct: 304 QLAVEVK 310


>gi|229132592|ref|ZP_04261440.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
 gi|228650824|gb|EEL06811.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
          Length = 119

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 35/96 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++      L DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIKLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99


>gi|120609153|ref|YP_968831.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
           citrulli AAC00-1]
 gi|120587617|gb|ABM31057.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
           citrulli AAC00-1]
 gi|255047056|gb|AAW81013.2| HrcQ [Acidovorax citrulli]
          Length = 352

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
                + V +   I+  +  L ++  L  G ++P     +     L  +G+ + +  L  
Sbjct: 267 TDIGGIRVPVAIEIDTARIRLDELAALDAGAIVPLAVAARDATVRLVCHGQVVGTGRLVV 326

Query: 292 VGKNYTIRI 300
           +G +  +RI
Sbjct: 327 IGDHLGVRI 335


>gi|119385378|ref|YP_916434.1| surface presentation of antigens (SPOA) protein [Paracoccus
           denitrificans PD1222]
 gi|119375145|gb|ABL70738.1| surface presentation of antigens (SPOA) protein [Paracoccus
           denitrificans PD1222]
          Length = 85

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG---RV 292
            Q+ V I  R+   + T+ ++  L+   ++           +    K I   EL      
Sbjct: 11  DQIQVEITIRLGGTQLTVAELSRLRPDDILTLDQDMSDGVEICVGDKVIARGELVSGDET 70

Query: 293 GKNYTIRI 300
                +RI
Sbjct: 71  DNRLCVRI 78


>gi|217425190|ref|ZP_03456685.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 576]
 gi|217391795|gb|EEC31822.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 576]
          Length = 323

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 245 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 303

Query: 295 NYTIRIT 301
              + + 
Sbjct: 304 QLAVEVK 310


>gi|167828748|ref|ZP_02460219.1| type III secretion system protein BsaV [Burkholderia pseudomallei
           9]
          Length = 294

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 216 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 274

Query: 295 NYTIRIT 301
              + + 
Sbjct: 275 QLAVEVK 281


>gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
 gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
          Length = 98

 Score = 52.7 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 34/71 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   + VN+  R+  K+  +KD+  L +G ++    +      +  + K++   E   +
Sbjct: 27  KQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFLDEKKVGIGEAILM 86

Query: 293 GKNYTIRITDR 303
            +N+ I I++ 
Sbjct: 87  DENFGIVISEI 97


>gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus
           cytotoxicus NVH 391-98]
          Length = 119

 Score = 52.7 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 1/92 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             +S +  +  + E            +++ +  ++      L DV  LK+G V+      
Sbjct: 9   SLMSLEEYAIQREEQAKAHI-DTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEVEKNL 67

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                +  +  ++   E   + + + I I++ 
Sbjct: 68  GHKVDVYLSDIKVGIGEAIVMDEQFGIIISEI 99


>gi|254301455|ref|ZP_04968899.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
 gi|157810889|gb|EDO88059.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
          Length = 319

 Score = 52.7 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 241 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 299

Query: 295 NYTIRIT 301
              + + 
Sbjct: 300 QLAVEVK 306


>gi|271500422|ref|YP_003333447.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya
           dadantii Ech586]
 gi|270343977|gb|ACZ76742.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya
           dadantii Ech586]
          Length = 394

 Score = 52.7 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 23/63 (36%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +  R      TL+D+  L  G V+         A L    + +   EL  V     ++
Sbjct: 318 LALTVRCGYLTLTLQDLQQLAPGTVLTLQQAIPGEATLYHGEQPLAQGELVNVEGRLGLQ 377

Query: 300 ITD 302
           IT 
Sbjct: 378 ITR 380


>gi|167915492|ref|ZP_02502583.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 112]
          Length = 215

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 137 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 195

Query: 295 NYTIRIT 301
              + + 
Sbjct: 196 QLAVEVK 202


>gi|91782702|ref|YP_557908.1| putative type III secretion protein, FliN like [Burkholderia
           xenovorans LB400]
 gi|91686656|gb|ABE29856.1| Putative type III secretion protein, FliN like protein
           [Burkholderia xenovorans LB400]
          Length = 323

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 4/89 (4%)

Query: 223 QSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILS 278
             E        +      +    +  +     ++ ++  L+ G ++ F    +     L 
Sbjct: 232 TDETQPVEMTSELLPIDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTLL 291

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307
             G      EL  +     +R+T     D
Sbjct: 292 CQGIPFARGELIDIEGALGVRVTRLTQED 320


>gi|188532667|ref|YP_001906464.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|188027709|emb|CAO95562.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 338

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 199 LIIPQETLLKTTL-ISLSSQNKSENQSEDLIDPFA----RKTYQLNVNIDTRINLKKTTL 253
           L +P   LL     I L+S    E+ ++   +  +    R+   L ++++ R      TL
Sbjct: 220 LQLPHHFLLNHLENIPLNSAGDDESTNDPQSEYLSGEESRRLASLPLSLEVRCGRTVMTL 279

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++  L+ G V+   +     A L      I   EL  V  +
Sbjct: 280 GELQQLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 321


>gi|237510407|ref|ZP_04523122.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
 gi|235002612|gb|EEP52036.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
          Length = 319

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 241 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 299

Query: 295 NYTIRIT 301
              + + 
Sbjct: 300 QLAVEVK 306


>gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
 gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
          Length = 119

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 37/96 (38%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++++  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFARKRNEAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99


>gi|167820376|ref|ZP_02452056.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 91]
          Length = 233

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 155 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 213

Query: 295 NYTIRIT 301
              + + 
Sbjct: 214 QLAVEVK 220


>gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
           2396]
 gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
           2396]
          Length = 318

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 1/105 (0%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           L    L+ ++        + + +D        L + ++  +     TL ++  +  G   
Sbjct: 211 LDDHKLVLVTPMTSDTQHTPEPLDA-PSDLGNLELKLEFHLGSLNLTLAELSQMTEGAAF 269

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                 +    +  NG+ +  CEL  +      R+      D + 
Sbjct: 270 DLGLSLEAPVAMKVNGQTLARCELVEIDGRLGARVVRLTGGDSEV 314


>gi|328545472|ref|YP_004305581.1| flagellar motor switch protein [polymorphum gilvum SL003B-26A1]
 gi|326415213|gb|ADZ72276.1| Probable flagellar motor switch protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 136

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + VNI   +      + +++ L  G VIP  HR      +  NG+ +   E+  V
Sbjct: 53  DTILGIPVNIQVVLGSATMLVANLLKLGRGAVIPLNHRVGEPVDIVVNGRVVARGEVVVV 112

Query: 293 ---GKNYTIRITDRINFDQKSLK 312
                 + + +T+ I+    +L 
Sbjct: 113 EDDNSRFGVSLTEIISAQSTTLD 135


>gi|229588260|ref|YP_002870379.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
 gi|229360126|emb|CAY46983.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
          Length = 337

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 67/264 (25%), Gaps = 40/264 (15%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           Y + L     +     + +S    +   +             +      W          
Sbjct: 110 YVRLLETDRTKAFGCRLSVSLGQTRVEGY----VWLSPESFLALCDAGPWRGRAG-PMPA 164

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +  + +                 R    + +  + R    +  VL Q             
Sbjct: 165 SFRLAI------------AVTLGRLQLPIAQARSLRVGDVL--VLEQSF----------- 199

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
             +                     ++  I++ +    L +            ++     E
Sbjct: 200 --FLAQGNGYVQVGTH-------RLHGCIDDDSGPLCLTLTSIEETSVDEEFIAPHYAGE 250

Query: 222 NQSEDLIDPFARK-TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
              E + D F  +   +L++ ++ R      TL ++  L  G V+         A L   
Sbjct: 251 EDDEPVTDVFGHEPFDELSMALNVRCGTLNLTLGELRNLAPGAVLGIAGYAPGMAGLYYG 310

Query: 281 GKEIYSCELGRVGKNYTIRITDRI 304
            + I   +L  V     ++++  +
Sbjct: 311 DRPIGQGQLVEVDGRLGLQLSRVM 334


>gi|207108700|ref|ZP_03242862.1| flagellar motor switch protein FliY [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 57

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           + IG V+           +  + K I   E+  V  N+ I+ITD I   ++ L+   +
Sbjct: 1   MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 57


>gi|167724227|ref|ZP_02407463.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei DM98]
          Length = 182

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 104 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 162

Query: 295 NYTIRIT 301
              + + 
Sbjct: 163 QLAVEVK 169


>gi|229058413|ref|ZP_04196797.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
 gi|228719922|gb|EEL71512.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
          Length = 119

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 35/96 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++      L DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIQLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    +  +  ++   E   + + + I I++ 
Sbjct: 64  EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99


>gi|323388135|gb|ADX60331.1| type III secretion protein RscQab [Pseudomonas fluorescens]
          Length = 330

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 1/121 (0%)

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK-TYQLNVNID 243
            +   I++ +    L +             +SQ   +   E ++D F  +   +LN+ + 
Sbjct: 207 RLQGCIDDESGPLCLTLVSIEETSVDEDFATSQYPGDELDEPVVDVFGHEPFDELNMALT 266

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            R      TL ++  L  G V+         A L    + I   +L  V     ++++  
Sbjct: 267 VRCGTLNLTLGELRNLAPGAVLGIAGYAPGMAGLYYGDRPIGQGQLVEVDGRLGLQLSRV 326

Query: 304 I 304
           I
Sbjct: 327 I 327


>gi|99082785|ref|YP_614939.1| surface presentation of antigens (SPOA) protein [Ruegeria sp.
           TM1040]
 gi|99039065|gb|ABF65677.1| Flagellar motor switch protein fliN [Ruegeria sp. TM1040]
          Length = 98

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
           + V +   +   +  ++D+V L    ++    + +    L    + +   +L    G   
Sbjct: 21  VPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVARGQLEEMEGDQA 80

Query: 294 KNYTIRITDR 303
               +R+T+ 
Sbjct: 81  GQLAVRLTEI 90


>gi|167898810|ref|ZP_02486211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 7894]
          Length = 264

 Score = 52.3 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 186 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 244

Query: 295 NYTIRIT 301
              + + 
Sbjct: 245 QLAVEVK 251


>gi|53716432|ref|YP_106204.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           ATCC 23344]
 gi|124382042|ref|YP_001025752.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           NCTC 10229]
 gi|126447332|ref|YP_001077837.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           NCTC 10247]
 gi|254176060|ref|ZP_04882718.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           ATCC 10399]
 gi|254359171|ref|ZP_04975443.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           2002721280]
 gi|52422402|gb|AAU45972.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           ATCC 23344]
 gi|126240186|gb|ABO03298.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           NCTC 10247]
 gi|148028358|gb|EDK86318.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           2002721280]
 gi|160697102|gb|EDP87072.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           ATCC 10399]
 gi|261826615|gb|ABM99775.2| type III secretion inner membrane protein SctQ [Burkholderia mallei
           NCTC 10229]
          Length = 645

 Score = 52.3 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +    Q  +  +      P      ++ + +   I+    ++ ++  L+ G V+      
Sbjct: 546 LPAGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 605

Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +     L A G+ I    L  VG +  +RI      D
Sbjct: 606 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 642


>gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
 gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
          Length = 99

 Score = 52.3 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 39/98 (39%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +   + L      E   E       R+   + VN+  R+  ++  + D+  L IG V+
Sbjct: 1   MEQIFQVELPEWEPKETTQESREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVL 60

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
               +      +  + K++   E   + +N+ I I++ 
Sbjct: 61  EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98


>gi|167907138|ref|ZP_02494343.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei NCTC 13177]
          Length = 260

 Score = 52.3 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 182 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 240

Query: 295 NYTIRIT 301
              + + 
Sbjct: 241 QLAVEVK 247


>gi|167615480|ref|ZP_02384115.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia thailandensis Bt4]
          Length = 205

 Score = 52.3 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
                + + +   ++    ++ ++  L+ G V+      +     L A G+ I    L  
Sbjct: 127 ADLGDVELPVHVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVA 186

Query: 292 VGKNYTIRITDRINFD 307
           VG +  +RI      D
Sbjct: 187 VGAHLGVRIDRMAGDD 202


>gi|85060063|ref|YP_455765.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
 gi|45504774|gb|AAS66864.1| SpaO [Sodalis glossinidius]
 gi|84780583|dbj|BAE75360.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
          Length = 338

 Score = 52.3 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 28/68 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L + ++  +  +  +L ++   + G+V+      +    + ANG  +   EL ++  
Sbjct: 262 LANLPLTLEFILQRRYLSLGEIQQFRQGKVLELDPEGEKHIEIRANGHLLALGELVQLED 321

Query: 295 NYTIRITD 302
              + + +
Sbjct: 322 RLGVELME 329


>gi|167567223|ref|ZP_02360139.1| RhcQ protein [Burkholderia oklahomensis EO147]
          Length = 104

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 26/69 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   +   +TTL ++ ++  G V+           + A+G  I   E   +G 
Sbjct: 32  LDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVMIGYGEFVEIGS 91

Query: 295 NYTIRITDR 303
              + +   
Sbjct: 92  RVAVELIRM 100


>gi|149189862|ref|ZP_01868142.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148836348|gb|EDL53305.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 270

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/283 (7%), Positives = 74/283 (26%), Gaps = 38/283 (13%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           I      L     + L    +  +    V +          + +  +  +    S    S
Sbjct: 25  IRNKLEELLINSCQQLSLELQAWLKTQQVLVELDHV---SLTELPQTNVDVTSVSVLKHS 81

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                 ++     +++ L +        T  +     L+  + +L +R            
Sbjct: 82  D-DGMLYVSMEPTMLMRLSDQFY----STSMERSGGELTNSDLRLLQRIAKCA------- 129

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
            S         +                        +++ + +  +   + +    +   
Sbjct: 130 -SQWIAPETTWKQHEFEVIPG---------IGIAAKLSIYVRSQQALLAVTLDSALIQTL 179

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
                 + N            F    ++  V ++ +++     L  V+ LK   ++P   
Sbjct: 180 IDELELTPNPHMASD------FNHALHKTPVRLNVQLSKTVLPLTQVLKLKADDILPIEL 233

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                  +    + +++  +        +     +N D+++ +
Sbjct: 234 LNNAPVNI--GKETLFTGRVAEQEGQLVL----ILNDDKETNR 270


>gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes Clip81459]
 gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J1-208]
 gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes
           L99]
 gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
 gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
 gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
 gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 100

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 39/99 (39%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            + +   + L      E   E       R+   + VN+  R+  K+  + D+  L IG V
Sbjct: 1   MMEQVFQVELPEWEPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDV 60

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +    +      +  + K++   E   + +N+ I I++ 
Sbjct: 61  LEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 99


>gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
 gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
          Length = 99

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 39/98 (39%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +   + L      E   E       R+   + VN+  R+  ++  + D+  L IG V+
Sbjct: 1   MEQIFQVELPEWEPKETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVL 60

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
               +      +  + K++   E   + +N+ I I++ 
Sbjct: 61  EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98


>gi|218663134|ref|ZP_03519064.1| flagellar C-ring protein [Rhizobium etli IE4771]
          Length = 47

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +    +SAN KE+Y CE GR G+NY +R+ D +N D + +++ ++
Sbjct: 3   EVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELIRHLMN 47


>gi|225871935|ref|YP_002753389.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793506|gb|ACO33596.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
          Length = 116

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++E  S  L      +  Q  + ++ R+ ++   +KDV+ L+ G +              
Sbjct: 31  EAETASLSLRRTIEERVTQAPLRLEIRLPIRGLRVKDVLALRKGAIFETQWPADEDIPGD 90

Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302
             G+++   E   + K   +R+T 
Sbjct: 91  CGGQQLVWAEFEVIDKKLAVRVTR 114


>gi|239815264|ref|YP_002944174.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
 gi|239801841|gb|ACS18908.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
          Length = 322

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 3/110 (2%)

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDPFARKTYQLNVNIDTRINLKKT 251
              + L +P   +        ++        + L   +P  +      V +   +   + 
Sbjct: 189 GGVWRLGLPHGAVAAVLASESAAAKPPLRSGDHLLPKEPLDQALADRRVALRVMLKGAEL 248

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRI 300
            L  +  L++  V+P  H     A +  A+G  +    LG+      I +
Sbjct: 249 NLGQLQELRVDDVVPLEHLLDAPAHVVGADGGRVCDGWLGQSDGRMAIEL 298


>gi|294665991|ref|ZP_06731254.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604239|gb|EFF47627.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 304

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                + + Q+ +           A    +L + +   ++    +L  +  L+ GQ++  
Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259

Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
                     L   G+ I    L  VG++  ++I   
Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296


>gi|213023716|ref|ZP_03338163.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 140

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 64  ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 123

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 124 NEFMVRITR 132


>gi|5679187|gb|AAD46901.1|AF160974_4 HrcQ homolog [Xanthomonas campestris pv. glycines]
 gi|30524903|gb|AAP34348.1|AF499777_16 HrcQ [Xanthomonas axonopodis pv. glycines]
          Length = 304

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                + + Q+ +           A    +L + +   ++    +L  +  L+ GQ++  
Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259

Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
                     L   G+ I    L  VG++  ++I   
Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296


>gi|238757864|ref|ZP_04619046.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC
           35236]
 gi|238703849|gb|EEP96384.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC
           35236]
          Length = 269

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            E    D   P A     L   +   +     +L  +  L++G ++P   +      L  
Sbjct: 169 EERDDVDNPPPLAVSIDDLPQILLVEVGQVDISLGALRALRVGDLLPVAAQFGGEVKLRL 228

Query: 280 NGKEIYSCELGRVGKNYTIRITD 302
           NG+ + + EL   G ++ +RI  
Sbjct: 229 NGRVLGAGELVGCGDSFLVRINR 251


>gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
          Length = 100

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 39/99 (39%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            + +   + L      E   E       R+   + VN+  R+  K+  + D+  L IG V
Sbjct: 1   MMEQVFQVELPEWEPKETPQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDV 60

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +    +      +  + K++   E   + +N+ I I++ 
Sbjct: 61  LEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 99


>gi|167724362|ref|ZP_02407598.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei DM98]
          Length = 216

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +    Q  +  +      P      ++ + +   I+    ++ ++  L+ G V+      
Sbjct: 117 LQAGLQADASPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 176

Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +     L A G+ I    L  VG +  +RI      D
Sbjct: 177 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 213


>gi|294625839|ref|ZP_06704455.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599867|gb|EFF43988.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 304

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                + + Q+ +           A    +L + +   ++    +L  +  L+ GQ++  
Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259

Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
                     L   G+ I    L  VG++  ++I   
Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296


>gi|227820524|ref|YP_002824495.1| type III secretion system translocation protein, RhcQ
           [Sinorhizobium fredii NGR234]
 gi|227339523|gb|ACP23742.1| type III secretion system translocation protein, RhcQ
           [Sinorhizobium fredii NGR234]
          Length = 351

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 1/92 (1%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           L S    +    Q              L + +   I   +  LK++  +  G V+     
Sbjct: 256 LKSSWEFSAMSKQQPPSSGEL-EPLADLPIELVFEIGRAEFPLKEIARMGEGTVLHASPS 314

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             +   + ANG+ +   EL R+G+   IR+  
Sbjct: 315 LSSPVSILANGRLVGKGELIRIGEGLGIRVVR 346


>gi|46562140|ref|YP_009161.1| type III secretion system protein YopQ family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447677|gb|AAS94343.1| type III secretion system protein, YopQ family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235511|gb|ADP88364.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris RCH1]
          Length = 484

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/278 (8%), Positives = 58/278 (20%), Gaps = 25/278 (8%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107
                 +   V            +               +    S    +  S     T 
Sbjct: 146 TALATLLGTTVRAEAMETPPAASTDAAPGVASGTSAGHDAPPPGSCAVVLALSVPTGDTK 205

Query: 108 LENLLGASHETIPQLYNRS--------LSTVEKKLAKRTIAQISAVLNQCISTTQE-SSP 158
                G +        +           + V  +L       ++  L   +    E  +P
Sbjct: 206 GGTAAGGTTPAPDTGGDGDNRDSGSAGHTVVPLRLTLPV--ALATSLAAQLMALPERHTP 263

Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN----VASSFVLII-PQETL------- 206
             +    +          ++E  T    ++ +      +     L+  P           
Sbjct: 264 REDIPVTVTIEAGRMRLAAHELATLAVDDVLLPEDYPALRGRIALMTGPHAFACSLTEGR 323

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQL--NVNIDTRINLKKTTLKDVVTLKIGQV 264
                 + +        S+                V+I   +  +   L D+  L  G  
Sbjct: 324 ATVLDATPAPNTPESPMSDQQTPEVPAGLDTAALEVDIVFELERRTMKLNDLAALAPGYT 383

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                       L   G+ I    L  +     +++  
Sbjct: 384 FALGTDPLAPVTLRVQGRNIGRGRLVDLDGTPGVQVLH 421


>gi|307944365|ref|ZP_07659706.1| putative surface presentation of antigens (spoa) protein [Roseibium
           sp. TrichSKD4]
 gi|307772711|gb|EFO31931.1| putative surface presentation of antigens (spoa) protein [Roseibium
           sp. TrichSKD4]
          Length = 348

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           A K  ++ VN+       +  + ++  L+ G V+     +     L  NG++I    L  
Sbjct: 272 AGKVDEIKVNLVVSAGELQLPIGELRELETGSVLRLPVGQPGNVNLMVNGQKIGEGVLVT 331

Query: 292 VGKNYTIRITD 302
           +     + I+ 
Sbjct: 332 ISGQTAVEISK 342


>gi|171316783|ref|ZP_02905994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MEX-5]
 gi|171098041|gb|EDT42857.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MEX-5]
          Length = 377

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRV 292
               L V ++  I+     +  +  ++ G VI            L+A+ + I   EL  V
Sbjct: 299 AIGALEVPVNFEIDTVALPIDQLAAMRQGYVIELSRTTSDMQVRLTAHSQVIGHGELVSV 358

Query: 293 GKNYTIRITDRINFDQ 308
           G +  +RI      D 
Sbjct: 359 GDHLGVRILQMAQRDD 374


>gi|2196899|gb|AAB61257.1| FliY [Treponema pallidum]
          Length = 113

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/89 (10%), Positives = 20/89 (22%), Gaps = 2/89 (2%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
           P   A  +G  G      ++  S             +      V IS    +        
Sbjct: 26  PAAGASFSGG-GLSSAQSELLQSFCQANVGSFCPSLESLTGKTVSISPPRVEISSKEEFS 84

Query: 75  HSFKENFVFSQASLS-SWSSNFFIGCSNN 102
               +  V +       ++ +     +  
Sbjct: 85  RVIPDMLVATVIDFEGEFAGDHLFLMAPE 113


>gi|83717892|ref|YP_438371.1| hypothetical protein BTH_II0169 [Burkholderia thailandensis E264]
 gi|83651717|gb|ABC35781.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 319

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/182 (8%), Positives = 51/182 (28%), Gaps = 12/182 (6%)

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
            T         +T E++LA+R   +++  + +          +     +        +  
Sbjct: 143 ATAAHAPPIPETTTERRLAERLAGELARTVARA------IPFDAPPDDETPPPPDGGHAR 196

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
                    +              +      +      SS +++ +              
Sbjct: 197 RAHLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSV--RRERSLPST-- 252

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +L + +  ++        DV+ L+ G V+P        A +  +  ++++  +       
Sbjct: 253 RLRLKLTAQLMEMSVPFGDVLRLRPGTVLPVRLHA--PARVMTHDAQLFTASIAEHNGKL 310

Query: 297 TI 298
            +
Sbjct: 311 CL 312


>gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J2-064]
          Length = 99

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 40/98 (40%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +   + L      E+  E       R+   + VN+  R+  K+  + D+  L IG V+
Sbjct: 1   MEQVFQVELPEWEPKESSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVL 60

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
               +      +  + K++   E   + +N+ I I++ 
Sbjct: 61  EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98


>gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 99

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 40/98 (40%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +   + L     +E   E       R+   + VN+  R+  ++  + D+  L IG V+
Sbjct: 1   MEQIFQVELPEWEPNETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVL 60

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
               +      +  + K++   E   + +N+ I I++ 
Sbjct: 61  EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98


>gi|83716524|ref|YP_438950.1| surface presentation of antigens domain-containing protein
           [Burkholderia thailandensis E264]
 gi|257142054|ref|ZP_05590316.1| surface presentation of antigens domain-containing protein
           [Burkholderia thailandensis E264]
 gi|83650349|gb|ABC34413.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia thailandensis E264]
          Length = 423

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
                + + +   ++    ++ ++  L+ G V+      +     L A G+ I    L  
Sbjct: 345 ADLGDVELPVHVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVA 404

Query: 292 VGKNYTIRITDRINFD 307
           VG +  +RI      D
Sbjct: 405 VGAHLGVRIDRMAGDD 420


>gi|82470759|gb|ABB77411.1| HrcQ [Pantoea stewartii subsp. stewartii]
          Length = 336

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 5/112 (4%)

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE-DLIDPFARK----TYQLNVNI 242
           + I        L +P   ++     +  +  ++E        +  A         L +++
Sbjct: 209 VNIAGYELVGTLQLPHHFVITHLERTALNPYETEGSDAVSKREHLASDDHFSLAMLPLSL 268

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
           + R    + TL ++  L+ G V+   +     A L      I   EL  V  
Sbjct: 269 EVRCGRTRLTLGELQHLQPGSVLTLDNMTPGEADLYYGETLIAQGELVDVEG 320


>gi|1648935|gb|AAB17683.1| putative [Sinorhizobium fredii]
 gi|19749327|gb|AAL98697.1| Y4yK [Sinorhizobium fredii]
 gi|52631920|gb|AAU85370.1| RhcQ [Sinorhizobium fredii]
          Length = 382

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 34/101 (33%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                S   +     ++E  + P       + + +         +L D+ +   G V   
Sbjct: 282 PFRPQSRPLEYAHMTETESQLRPSDADLDDIEIVLVFECGRWPISLGDLRSAGDGHVFEL 341

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                    + ANG+ I   ++ R+G    IR+  R+  + 
Sbjct: 342 GRPIDGLVDIVANGRCIGRGDIVRIGDELGIRLRGRLACND 382


>gi|124381914|ref|YP_001025863.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10229]
 gi|126447935|ref|YP_001077948.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10247]
 gi|254359076|ref|ZP_04975348.1| type III secretion system protein BsaV [Burkholderia mallei
           2002721280]
 gi|126240789|gb|ABO03901.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10247]
 gi|148028263|gb|EDK86223.1| type III secretion system protein BsaV [Burkholderia mallei
           2002721280]
 gi|261826559|gb|ABN00415.2| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10229]
          Length = 335

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T++ +    +G V+P          + ANG+     EL +VG+
Sbjct: 257 IDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 315

Query: 295 NYTIRIT 301
              + + 
Sbjct: 316 QLAVEVK 322


>gi|254469380|ref|ZP_05082785.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062]
 gi|211961215|gb|EEA96410.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062]
          Length = 350

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE---KTCAILSANGKEIYSCELGR 291
             Q++V +   ++ ++ ++ ++ +   G ++         +T   + A GK I    L +
Sbjct: 273 LSQMSVPVRFEVDEREISIAELESWAAGTLVNIDVPALNEETPVYVRAAGKRIAKGHLVQ 332

Query: 292 VGKNYTIRITDR 303
           + +   +RI+  
Sbjct: 333 IDERVALRISKT 344


>gi|167577332|ref|ZP_02370206.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia thailandensis TXDOH]
          Length = 226

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
                + + +   ++    ++ ++  L+ G V+      +     L A G+ I    L  
Sbjct: 148 ADLGDVELPVHVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVA 207

Query: 292 VGKNYTIRITDRINFD 307
           VG +  +RI      D
Sbjct: 208 VGAHLGVRIDRMAGDD 223


>gi|167004217|ref|ZP_02269984.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20]
 gi|243060412|gb|EES42598.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20]
          Length = 331

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T++ +    +G V+P          + ANG+     EL +VG+
Sbjct: 253 IDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 311

Query: 295 NYTIRIT 301
              + + 
Sbjct: 312 QLAVEVK 318


>gi|21241176|ref|NP_640758.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106483|gb|AAM35294.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 304

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                + + Q+ +           A    +L + +   ++    +L  +  L+ GQ++  
Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259

Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
                     L   G+ I    L  VG++  ++I   
Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296


>gi|53716455|ref|YP_106127.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           23344]
 gi|67641438|ref|ZP_00440217.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia mallei GB8 horse 4]
 gi|254176163|ref|ZP_04882821.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           10399]
 gi|254200993|ref|ZP_04907358.1| type III secretion system protein BsaV [Burkholderia mallei FMH]
 gi|254204957|ref|ZP_04911310.1| type III secretion system protein BsaV [Burkholderia mallei JHU]
 gi|52422425|gb|AAU45995.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           23344]
 gi|147748605|gb|EDK55680.1| type III secretion system protein BsaV [Burkholderia mallei FMH]
 gi|147754543|gb|EDK61607.1| type III secretion system protein BsaV [Burkholderia mallei JHU]
 gi|160697205|gb|EDP87175.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           10399]
 gi|238522378|gb|EEP85823.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia mallei GB8 horse 4]
          Length = 327

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T++ +    +G V+P          + ANG+     EL +VG+
Sbjct: 249 IDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 307

Query: 295 NYTIRIT 301
              + + 
Sbjct: 308 QLAVEVK 314


>gi|238563925|ref|ZP_04610802.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           GB8 horse 4]
 gi|238519669|gb|EEP83138.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           GB8 horse 4]
          Length = 160

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +    Q  +  +      P      ++ + +   I+    ++ ++  L+ G V+      
Sbjct: 61  LPAGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 120

Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +     L A G+ I    L  VG +  +RI      D
Sbjct: 121 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 157


>gi|167614817|ref|ZP_02383452.1| hypothetical protein BthaB_00940 [Burkholderia thailandensis Bt4]
 gi|257141402|ref|ZP_05589664.1| hypothetical protein BthaA_19664 [Burkholderia thailandensis E264]
          Length = 298

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/182 (8%), Positives = 51/182 (28%), Gaps = 12/182 (6%)

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
            T         +T E++LA+R   +++  + +          +     +        +  
Sbjct: 122 ATAAHAPPIPETTTERRLAERLAGELARTVARA------IPFDAPPDDETPPPPDGGHAR 175

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
                    +              +      +      SS +++ +              
Sbjct: 176 RAHLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSV--RRERSLPST-- 231

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +L + +  ++        DV+ L+ G V+P        A +  +  ++++  +       
Sbjct: 232 RLRLKLTAQLMEMSVPFGDVLRLRPGTVLPVRLHA--PARVMTHDAQLFTASIAEHNGKL 289

Query: 297 TI 298
            +
Sbjct: 290 CL 291


>gi|254185166|ref|ZP_04891755.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1655]
 gi|184215758|gb|EDU12739.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1655]
          Length = 335

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG+     EL +VG+
Sbjct: 257 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGCGELIQVGE 315

Query: 295 NYTIRIT 301
              + + 
Sbjct: 316 QLAVEVK 322


>gi|16799781|ref|NP_470049.1| flagellar motor switch protein [Listeria innocua Clip11262]
 gi|16413158|emb|CAC95938.1| lin0706 [Listeria innocua Clip11262]
          Length = 78

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           + + + ID  +   K  +  ++ +K G V            ++ +GK I   E+      
Sbjct: 5   HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTGNVVKITISGKCIGYGEILTKDGK 64

Query: 296 YTIRITD 302
             ++IT 
Sbjct: 65  MFVKITK 71


>gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262]
 gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J1-175]
 gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262]
 gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816]
          Length = 99

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 39/98 (39%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +   + L      E   E       R+   + VN+  R+  K+  + D+  L IG V+
Sbjct: 1   MEQVFQVELPEWEPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVL 60

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
               +      +  + K++   E   + +N+ I I++ 
Sbjct: 61  EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98


>gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
 gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland
           1988]
 gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
 gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
 gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161]
 gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
 gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
 gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e]
 gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
          Length = 99

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  K+  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 28  RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87

Query: 293 GKNYTIRITDR 303
            +N+ I I++ 
Sbjct: 88  DENFGIVISEI 98


>gi|218887526|ref|YP_002436847.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758480|gb|ACL09379.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 409

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 23/69 (33%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V +   +  +  T+ D+  L  G              L+  G+ + +  L  +G 
Sbjct: 332 VNALGVTVVFELERRPMTVGDLAALAPGYTFALGADPLGPVTLTVGGRAVGTGRLVDLGG 391

Query: 295 NYTIRITDR 303
              +++   
Sbjct: 392 TLGVQVLRM 400


>gi|260899856|ref|ZP_05908251.1| conserved domain protein [Vibrio parahaemolyticus AQ4037]
 gi|221271468|dbj|BAH15020.1| putative type III secretion system apparatus protein VscQ2 [Vibrio
           parahaemolyticus]
 gi|308107308|gb|EFO44848.1| conserved domain protein [Vibrio parahaemolyticus AQ4037]
 gi|328469630|gb|EGF40566.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus
           10329]
          Length = 71

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + + ID  I     TL++++ L+ G +I      ++  +L +  + I +  L ++   Y 
Sbjct: 1   MKIAIDVVIAHCSMTLEELLHLQKGNMIKIDDFVQSEVMLKSGNELIATGTLIKIDDQYG 60

Query: 298 IRITDR 303
           + I + 
Sbjct: 61  VSIDNV 66


>gi|126442961|ref|YP_001063273.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
 gi|126222452|gb|ABN85957.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
          Length = 424

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                   +  +      P      ++ + +   I+    ++ ++  L+ G V+      
Sbjct: 325 SLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 384

Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +     L A G+ I    L  VG +  +RI      D
Sbjct: 385 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 421


>gi|187919911|ref|YP_001888942.1| surface presentation of antigens (SPOA) protein [Burkholderia
           phytofirmans PsJN]
 gi|187718349|gb|ACD19572.1| surface presentation of antigens (SPOA) protein [Burkholderia
           phytofirmans PsJN]
          Length = 327

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 4/83 (4%)

Query: 224 SEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILSA 279
             +       +      L  + D  I     TL +++ L+ G  +            L  
Sbjct: 234 DANQSAEMTSELIPASALTFSFDAVIGTLSLTLDELMRLRTGSTVSLQQPVGRHAIRLLC 293

Query: 280 NGKEIYSCELGRVGKNYTIRITD 302
            G      EL  +     +RI D
Sbjct: 294 QGIPFARGELIDIDDALGVRIVD 316


>gi|254193852|ref|ZP_04900284.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei S13]
 gi|169650603|gb|EDS83296.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei S13]
          Length = 428

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 349 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 408

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 409 VGEHLGVRIIRM 420


>gi|167566299|ref|ZP_02359215.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia oklahomensis EO147]
          Length = 144

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
              + + +   I+    ++ ++  L+ G V+      +     L A G+ I   EL  VG
Sbjct: 68  LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 127

Query: 294 KNYTIRITDRINFD 307
            +  +RI      D
Sbjct: 128 AHLGVRINRMAGDD 141


>gi|254186718|ref|ZP_04893234.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157934402|gb|EDO90072.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 428

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 349 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 408

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 409 VGEHLGVRIIRM 420


>gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 99

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  K+  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 28  RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87

Query: 293 GKNYTIRITDR 303
            +N+ I I++ 
Sbjct: 88  DENFGIVISEI 98


>gi|299066543|emb|CBJ37733.1| protein of unknown function [Ralstonia solanacearum CMR15]
          Length = 321

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQV 264
             LI           +E   +              +++   +N  +  L  +  L++G V
Sbjct: 218 MRLIGPCVATTDGAATERRSEALLTPVLSALSAEPLSMTVELNPVELGLGTLTGLQVGDV 277

Query: 265 IPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRI 300
           I   H  +   ++ A +G  +    LGR+     I +
Sbjct: 278 IRIPHALEMPLLVRADDGALLCQAFLGRLDGQKAIEL 314


>gi|238752881|ref|ZP_04614346.1| Flagellar motor switch protein [Yersinia rohdei ATCC 43380]
 gi|238708920|gb|EEQ01173.1| Flagellar motor switch protein [Yersinia rohdei ATCC 43380]
          Length = 292

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 72/207 (34%), Gaps = 17/207 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            N        L++ LL +  G + E   I  + N  ++  E++L  +    I+ ++    
Sbjct: 85  GNVAFDIDRTLLLNLLNDYYGLTKEKNIISDVENLPITQTEERLKNKLSLDITDLILN-- 142

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
                  P   +  DI             +   ++  +       +F L+I    + +  
Sbjct: 143 ------QPEFGELLDIKNNNSPPIA---NWSYRMDFWLK-GYEKCAFTLLIDLPHVDRFL 192

Query: 211 LISLSSQNKSENQSEDLI-DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
               +     + +++      F +   +L + + ++++  + T  D++ LK G +IP   
Sbjct: 193 SKLNNEHQSEKKKNQTFSIKQFDQLVKKLPIRLTSKLSCSELTFSDLMKLKEGDIIPATL 252

Query: 270 REKTCAILSANGKEIYSCELGRVGKNY 296
            E     +    + ++S  +       
Sbjct: 253 PEHFP--VFIGKESLFSAVVSESRGKL 277


>gi|134282037|ref|ZP_01768743.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
 gi|134246566|gb|EBA46654.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
          Length = 424

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                   +  +      P      ++ + +   I+    ++ ++  L+ G V+      
Sbjct: 325 SLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 384

Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +     L A G+ I    L  VG +  +RI      D
Sbjct: 385 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 421


>gi|167573401|ref|ZP_02366275.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia oklahomensis C6786]
          Length = 139

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
              + + +   I+    ++ ++  L+ G V+      +     L A G+ I   EL  VG
Sbjct: 63  LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 122

Query: 294 KNYTIRITDRINFD 307
            +  +RI      D
Sbjct: 123 AHLGVRINRMAGDD 136


>gi|237510474|ref|ZP_04523189.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
 gi|235002679|gb|EEP52103.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
          Length = 424

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
                   +  +      P      ++ + +   I+    ++ ++  L+ G V+      
Sbjct: 325 SLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 384

Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +     L A G+ I    L  VG +  +RI      D
Sbjct: 385 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 421


>gi|76819487|ref|YP_335588.1| SctQ [Burkholderia pseudomallei 1710b]
 gi|76583960|gb|ABA53434.1| SctQ [Burkholderia pseudomallei 1710b]
          Length = 435

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 356 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 415

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 416 VGEHLGVRIIRM 427


>gi|167898939|ref|ZP_02486340.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei 7894]
          Length = 174

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +    Q  +  +      P      ++ + +   I+    ++ ++  L+ G V+      
Sbjct: 75  LPAGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 134

Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +     L A G+ I    L  VG +  +RI      D
Sbjct: 135 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 171


>gi|116872087|ref|YP_848868.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|315281359|ref|ZP_07869999.1| conserved domain protein [Listeria marthii FSL S4-120]
 gi|116740965|emb|CAK20085.1| flagellar motor switch protein, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|313614998|gb|EFR88502.1| conserved domain protein [Listeria marthii FSL S4-120]
          Length = 78

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           + + + ID  +   K  +  ++ +K G V            ++ +GK I   E+      
Sbjct: 5   HNIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64

Query: 296 YTIRITD 302
             ++IT 
Sbjct: 65  MFVKITK 71


>gi|329902178|ref|ZP_08273067.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327548849|gb|EGF33478.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 317

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 8/138 (5%)

Query: 173 TNRLSNE--FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID- 229
              L +   F  +    + I +   S V   P    L +    + S     +    ++  
Sbjct: 178 DIVLPDTCWFDCSGTGRIRIGSWQLSVVYTAPAGMTLLSLETRMDSLGTIVDTDSLVVSP 237

Query: 230 -----PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                  A     L + +   +    TTL  + TL  G V+P          ++A G+ +
Sbjct: 238 SLAGTHDAGGLDTLPLQLHFDMGCCHTTLGGLRTLVAGSVLPIEGGSPAAIGITAGGRTL 297

Query: 285 YSCELGRVGKNYTIRITD 302
              EL  V     IRI  
Sbjct: 298 GQGELVEVNGKLAIRIIH 315


>gi|161503488|ref|YP_001570600.1| type III secretion system protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864835|gb|ABX21458.1| hypothetical protein SARI_01564 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 322

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL  ++   I      +  +  LK G V+P          +  NG+ I   EL   G
Sbjct: 246 ELEQLPQSVLFEIGRASVEIGQLRQLKAGDVLPVGGCFAPEVTIRLNGRVIGQGELIACG 305

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 306 NEFMVRITR 314


>gi|317486825|ref|ZP_07945641.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921988|gb|EFV43258.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila
           wadsworthia 3_1_6]
          Length = 388

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 33/99 (33%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
            T+L          +   N +          T +L V +   +  +  T++DV TL  G 
Sbjct: 284 ATILSVLNPEEGPMSDENNTAAGAAPSEGVDTGELEVTLTFELERRLMTVRDVETLAPGY 343

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              F         L ANGK +    L  +     +++  
Sbjct: 344 TFAFGGDALAPVTLYANGKSVGKGRLVDLNGTLGVQVVS 382



 Score = 36.9 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/106 (10%), Positives = 33/106 (31%), Gaps = 3/106 (2%)

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           L     +  ++             + +++ +   AS+    IP    L     +L    +
Sbjct: 148 LHVPLAVRNVRMIEAAEPAVCALPLTLHVPVGAGASAEAYPIPVRLCLPDRESALELVER 207

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            +          A     + V +       + ++ ++ +L+   V+
Sbjct: 208 LDALPRRRALGLA---GDVPVPVSLEAGRMRLSVNELSSLEPDDVL 250


>gi|194292013|ref|YP_002007920.1| sctq: non flagellar t3S system conserved protein. flin/mopa/spao
           family. [Cupriavidus taiwanensis LMG 19424]
 gi|193225917|emb|CAQ71864.1| SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO
           family [Cupriavidus taiwanensis LMG 19424]
          Length = 399

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRV 292
           +  QL V +   +      L ++  +  G V       +++   + ANG  I +  L  V
Sbjct: 324 RLDQLEVTLRFEVGDVAVPLAELRAVAPGYVFELPQPLKQSEVRIVANGNRIGTGTLIAV 383

Query: 293 GKNYTIRIT 301
           G    +RIT
Sbjct: 384 GNRLGVRIT 392


>gi|317407760|gb|EFV87687.1| YscQ/HrcQ family type III secretion apparatus protein
           [Achromobacter xylosoxidans C54]
          Length = 396

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKN 295
           Q+ V +   +  +  TL  + TL +G+V          C  + ANG E+   EL  V  N
Sbjct: 324 QVPVRLGFDLGERLITLDRLRTLALGEVFELDRPVADGCVRIRANGMEVGLGELVEVEGN 383

Query: 296 YTIRITD 302
             +R+  
Sbjct: 384 IGVRLKS 390


>gi|167467560|ref|ZP_02332264.1| type III secretion system protein [Yersinia pestis FV-1]
          Length = 270

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   L   +   I      L ++  L +GQ +           +  NG+ +    L R  
Sbjct: 191 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 250

Query: 294 KNYTIRI 300
           +   +RI
Sbjct: 251 EKLVVRI 257


>gi|162419017|ref|YP_001608229.1| type III secretion system protein [Yersinia pestis Angola]
 gi|162351832|gb|ABX85780.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis Angola]
          Length = 294

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   L   +   I      L ++  L +GQ +           +  NG+ +    L R  
Sbjct: 215 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 274

Query: 294 KNYTIRI 300
           +   +RI
Sbjct: 275 EKLVVRI 281


>gi|51594681|ref|YP_068872.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           32953]
 gi|51587963|emb|CAH19566.1| type III secretion system apparatus protein, SsaQ [Yersinia
           pseudotuberculosis IP 32953]
          Length = 306

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   L   +   I      L ++  L +GQ +           +  NG+ +    L R  
Sbjct: 227 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 286

Query: 294 KNYTIRI 300
           +   +RI
Sbjct: 287 EKLVVRI 293


>gi|150260682|ref|ZP_01917410.1| type III secretion system apparatus protein [Yersinia pestis
           CA88-4125]
 gi|218927476|ref|YP_002345351.1| type III secretion system protein [Yersinia pestis CO92]
 gi|115346087|emb|CAL18955.1| type III secretion system apparatus protein [Yersinia pestis CO92]
 gi|149290090|gb|EDM40167.1| type III secretion system apparatus protein [Yersinia pestis
           CA88-4125]
          Length = 306

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   L   +   I      L ++  L +GQ +           +  NG+ +    L R  
Sbjct: 227 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 286

Query: 294 KNYTIRI 300
           +   +RI
Sbjct: 287 EKLVVRI 293


>gi|167820507|ref|ZP_02452187.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei 91]
          Length = 199

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 107 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 166

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 167 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 196


>gi|22124443|ref|NP_667866.1| type III secretion system protein [Yersinia pestis KIM 10]
 gi|45440279|ref|NP_991818.1| type III secretion system protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108810003|ref|YP_653919.1| type III secretion system protein [Yersinia pestis Antiqua]
 gi|108813558|ref|YP_649325.1| type III secretion system protein [Yersinia pestis Nepal516]
 gi|145600948|ref|YP_001165024.1| type III secretion system protein [Yersinia pestis Pestoides F]
 gi|165926685|ref|ZP_02222517.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165936446|ref|ZP_02225014.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010408|ref|ZP_02231306.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213947|ref|ZP_02239982.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167402221|ref|ZP_02307694.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167418911|ref|ZP_02310664.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426186|ref|ZP_02317939.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229836524|ref|ZP_04456690.1| type III secretion system apparatus protein [Yersinia pestis
           Pestoides A]
 gi|229840132|ref|ZP_04460291.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842213|ref|ZP_04462368.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904048|ref|ZP_04519161.1| type III secretion system apparatus protein [Yersinia pestis
           Nepal516]
 gi|270488966|ref|ZP_06206040.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis KIM D27]
 gi|294502342|ref|YP_003566404.1| type III secretion protein [Yersinia pestis Z176003]
 gi|21957230|gb|AAM84117.1|AE013654_6 putative type III secretion system component [Yersinia pestis KIM
           10]
 gi|45435135|gb|AAS60695.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777206|gb|ABG19725.1| type III secretion system apparatus protein [Yersinia pestis
           Nepal516]
 gi|108781916|gb|ABG15974.1| type III secretion system apparatus protein [Yersinia pestis
           Antiqua]
 gi|145212644|gb|ABP42051.1| type III secretion system apparatus protein [Yersinia pestis
           Pestoides F]
 gi|165915562|gb|EDR34171.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165921308|gb|EDR38532.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990498|gb|EDR42799.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204922|gb|EDR49402.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962905|gb|EDR58926.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048402|gb|EDR59810.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054897|gb|EDR64699.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229679818|gb|EEO75921.1| type III secretion system apparatus protein [Yersinia pestis
           Nepal516]
 gi|229690523|gb|EEO82577.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696498|gb|EEO86545.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706208|gb|EEO92216.1| type III secretion system apparatus protein [Yersinia pestis
           Pestoides A]
 gi|262360422|gb|ACY57143.1| type III secretion protein [Yersinia pestis D106004]
 gi|262364372|gb|ACY60929.1| type III secretion protein [Yersinia pestis D182038]
 gi|270337470|gb|EFA48247.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis KIM D27]
 gi|294352801|gb|ADE63142.1| type III secretion protein [Yersinia pestis Z176003]
 gi|320013866|gb|ADV97437.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 320

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   L   +   I      L ++  L +GQ +           +  NG+ +    L R  
Sbjct: 241 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 300

Query: 294 KNYTIRI 300
           +   +RI
Sbjct: 301 EKLVVRI 307


>gi|161502065|ref|YP_001569177.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|973277|gb|AAC43944.1| SpaO [Salmonella enterica]
 gi|973281|gb|AAC43947.1| SpaO [Salmonella enterica]
 gi|160863412|gb|ABX20035.1| hypothetical protein SARI_00082 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 303

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 37/90 (41%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E ++E           QL V ++  +  K+ TL D+  +   Q++      +    
Sbjct: 209 QHIEEEKNETETAEILPGLSQLPVKLEFVLYRKQVTLADLEAIGQQQLLSLPTNAECNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I   ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHKWLSE 298


>gi|186893684|ref|YP_001870796.1| type III secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|186696710|gb|ACC87339.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
           pseudotuberculosis PB1/+]
          Length = 320

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   L   +   I      L ++  L +GQ +           +  NG+ +    L R  
Sbjct: 241 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 300

Query: 294 KNYTIRI 300
           +   +RI
Sbjct: 301 EKLVVRI 307


>gi|4206077|gb|AAD11410.1| SctQ [Burkholderia pseudomallei]
          Length = 310

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 231 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 290

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 291 VGEHLGVRIIRM 302


>gi|167724021|ref|ZP_02407257.1| SctQ [Burkholderia pseudomallei DM98]
          Length = 359

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 340 VGEHLGVRIIRM 351


>gi|167915304|ref|ZP_02502395.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 112]
          Length = 347

 Score = 50.0 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 268 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 327

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 328 VGEHLGVRIIRM 339


>gi|238023707|ref|YP_002907939.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           glumae BGR1]
 gi|237878372|gb|ACR30704.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           glumae BGR1]
          Length = 445

 Score = 50.0 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVG 293
             ++ + +   I+     L  + +L  G V+            L  +G+ +   EL  VG
Sbjct: 368 VGKVELPVQFEIDTVALPLDQLSSLGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVG 427

Query: 294 KNYTIRITDR 303
           ++  +RI   
Sbjct: 428 EHLGVRIIRM 437


>gi|293416352|ref|ZP_06658991.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B185]
 gi|291431708|gb|EFF04691.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B185]
          Length = 299

 Score = 50.0 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 36/80 (45%)

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           ++      +   QL V++D  +  K+ TL  +  L  G+V+      +    + ANG  I
Sbjct: 213 QETEQHVVQDLGQLPVSLDFVLFRKQVTLTGLQELYQGKVLALPAEAEKRTEIRANGALI 272

Query: 285 YSCELGRVGKNYTIRITDRI 304
              EL ++  +  + IT+ +
Sbjct: 273 GYGELVQLDNSLGVEITEWV 292


>gi|134282546|ref|ZP_01769250.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
 gi|134246103|gb|EBA46193.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
          Length = 337

 Score = 50.0 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 258 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 317

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 318 VGEHLGVRIIRM 329


>gi|254301601|ref|ZP_04969045.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
 gi|157811292|gb|EDO88462.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
          Length = 359

 Score = 50.0 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 340 VGEHLGVRIIRM 351


>gi|48479064|gb|AAT44855.1| putative type III secretory pathway and flagellar biosynthesis
           protein [Burkholderia pseudomallei]
          Length = 310

 Score = 50.0 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 231 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 290

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 291 VGEHLGVRIIRM 302


>gi|167923137|ref|ZP_02510228.1| SctQ [Burkholderia pseudomallei BCC215]
 gi|217425374|ref|ZP_03456868.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 576]
 gi|217391625|gb|EEC31653.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 576]
          Length = 359

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 340 VGEHLGVRIIRM 351


>gi|167742990|ref|ZP_02415764.1| SctQ [Burkholderia pseudomallei 14]
 gi|167828536|ref|ZP_02460007.1| SctQ [Burkholderia pseudomallei 9]
 gi|167898603|ref|ZP_02486004.1| SctQ [Burkholderia pseudomallei 7894]
 gi|226199135|ref|ZP_03794697.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pakistan 9]
 gi|254264504|ref|ZP_04955369.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
 gi|225928910|gb|EEH24935.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pakistan 9]
 gi|254215506|gb|EET04891.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
          Length = 359

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 340 VGEHLGVRIIRM 351


>gi|237509496|ref|ZP_04522211.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
 gi|235001701|gb|EEP51125.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
          Length = 359

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 340 VGEHLGVRIIRM 351


>gi|254183804|ref|ZP_04890396.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1655]
 gi|184214337|gb|EDU11380.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1655]
          Length = 359

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 340 VGEHLGVRIIRM 351


>gi|126457706|ref|YP_001075941.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|167849994|ref|ZP_02475502.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei B7210]
 gi|242313295|ref|ZP_04812312.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106b]
 gi|126231474|gb|ABN94887.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|242136534|gb|EES22937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106b]
          Length = 359

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 340 VGEHLGVRIIRM 351


>gi|126442929|ref|YP_001062994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
 gi|126222420|gb|ABN85925.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
          Length = 359

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 340 VGEHLGVRIIRM 351


>gi|167820161|ref|ZP_02451841.1| SctQ [Burkholderia pseudomallei 91]
          Length = 359

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 340 VGEHLGVRIIRM 351


>gi|53722430|ref|YP_111415.1| type III secretion-associated protein [Burkholderia pseudomallei
           K96243]
 gi|52212844|emb|CAH38878.1| putative type III secretion-associated protein [Burkholderia
           pseudomallei K96243]
          Length = 310

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 231 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 290

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 291 VGEHLGVRIIRM 302


>gi|16802740|ref|NP_464225.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
 gi|46906949|ref|YP_013338.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091660|ref|ZP_00229456.1| flagellar motor switch protein, putative [Listeria monocytogenes
           str. 4b H7858]
 gi|47095264|ref|ZP_00232875.1| flagellar motor switch protein, putative [Listeria monocytogenes
           str. 1/2a F6854]
 gi|217965204|ref|YP_002350882.1| hypothetical protein LMHCC_1927 [Listeria monocytogenes HCC23]
 gi|224498780|ref|ZP_03667129.1| flagellar motor switch protein [Listeria monocytogenes Finland
           1988]
 gi|224501997|ref|ZP_03670304.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
 gi|226223329|ref|YP_002757436.1| flagellar switch protein [Listeria monocytogenes Clip81459]
 gi|254824022|ref|ZP_05229023.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|254829355|ref|ZP_05234042.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|254830311|ref|ZP_05234966.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
 gi|254853098|ref|ZP_05242446.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|254900066|ref|ZP_05259990.1| flagellar motor switch protein [Listeria monocytogenes J0161]
 gi|254911381|ref|ZP_05261393.1| flagellar motor switch protein [Listeria monocytogenes J2818]
 gi|254932022|ref|ZP_05265381.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|254935708|ref|ZP_05267405.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|254994392|ref|ZP_05276582.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-064]
 gi|255027497|ref|ZP_05299483.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
 gi|255030383|ref|ZP_05302334.1| flagellar motor switch protein [Listeria monocytogenes LO28]
 gi|255521911|ref|ZP_05389148.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
 gi|284801028|ref|YP_003412893.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284994170|ref|YP_003415938.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|290893995|ref|ZP_06556970.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|300764510|ref|ZP_07074503.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017]
 gi|16410087|emb|CAC98776.1| lmo0698 [Listeria monocytogenes EGD-e]
 gi|46880215|gb|AAT03515.1| putative flagellar motor switch protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47016335|gb|EAL07257.1| flagellar motor switch protein, putative [Listeria monocytogenes
           str. 1/2a F6854]
 gi|47019979|gb|EAL10716.1| flagellar motor switch protein, putative [Listeria monocytogenes
           str. 4b H7858]
 gi|217334474|gb|ACK40268.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|225875791|emb|CAS04494.1| Putative flagellar switch protein [Listeria monocytogenes serotype
           4b str. CLIP 80459]
 gi|258601768|gb|EEW15093.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|258606447|gb|EEW19055.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|258608291|gb|EEW20899.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|284056590|gb|ADB67531.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284059637|gb|ADB70576.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|290556441|gb|EFD89980.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|293583574|gb|EFF95606.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293589318|gb|EFF97652.1| flagellar motor switch protein [Listeria monocytogenes J2818]
 gi|293593250|gb|EFG01011.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|300514864|gb|EFK41918.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017]
 gi|307570237|emb|CAR83416.1| flagellar motor switch protein, putative [Listeria monocytogenes
           L99]
 gi|313610116|gb|EFR85439.1| conserved domain protein [Listeria monocytogenes FSL F2-208]
 gi|313620067|gb|EFR91580.1| conserved domain protein [Listeria innocua FSL S4-378]
 gi|328467264|gb|EGF38344.1| flagellar motor switch protein [Listeria monocytogenes 1816]
 gi|328475660|gb|EGF46409.1| flagellar motor switch protein [Listeria monocytogenes 220]
 gi|332311123|gb|EGJ24218.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 78

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           + + + ID  +   K  +  ++ +K G V            ++ +GK I   E+      
Sbjct: 5   HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64

Query: 296 YTIRITD 302
             ++IT 
Sbjct: 65  MFVKITK 71


>gi|15644623|ref|NP_228488.1| flagellar motor switch protein FliY [Thermotoga maritima MSB8]
          Length = 162

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 49/151 (32%), Gaps = 2/151 (1%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +   +  +L    TG +   +  + +   +G +            +  D+ I+  + +  
Sbjct: 8   SQEEIDKLLSDSDTGGVLTPEE-KDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREE 66

Query: 69  KFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
           K  ++   F    V               +     LV  + + ++G S E   +  +   
Sbjct: 67  KMKNVKSDFSGEQVVVSVEYTEGLEGLNVLVLDKKLVAVIADLMMGGSGEVETEELDEIK 126

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSP 158
            +   +   + +   +  L++ +  T   SP
Sbjct: 127 LSAVGEAMNQMMGSAATSLSELLGITINISP 157


>gi|167841182|ref|ZP_02467866.1| translocation protein in type III secretion [Burkholderia
           thailandensis MSMB43]
          Length = 327

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 20/68 (29%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
             +V I  +       L  +  L+ G ++           L   G+      L  +    
Sbjct: 260 DASVRIVAQAAAIDVPLDRLAALRSGDILEGPAIGDGLCTLKIGGRPFARGMLLDIDGRL 319

Query: 297 TIRITDRI 304
            IRI   +
Sbjct: 320 AIRIEHFV 327


>gi|217422634|ref|ZP_03454137.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei 576]
 gi|217394865|gb|EEC34884.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei 576]
          Length = 432

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 340 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 399

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 400 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 429


>gi|167923472|ref|ZP_02510563.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei BCC215]
          Length = 209

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 117 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 176

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 177 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 206


>gi|53722641|ref|YP_111626.1| type III secretion protein [Burkholderia pseudomallei K96243]
 gi|76818024|ref|YP_335836.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei 1710b]
 gi|254264905|ref|ZP_04955770.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
 gi|52213055|emb|CAH39093.1| putative type III secretion protein [Burkholderia pseudomallei
           K96243]
 gi|76582497|gb|ABA51971.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei 1710b]
 gi|254215907|gb|EET05292.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
          Length = 428

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 336 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 395

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 396 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 425


>gi|251768328|ref|ZP_02270322.2| type III secretion inner membrane protein SctQ [Burkholderia mallei
           PRL-20]
 gi|243060179|gb|EES42365.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           PRL-20]
          Length = 100

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
              Q  +  +      P      ++ + +   I+    ++ ++  L+ G V+      + 
Sbjct: 3   AGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARD 62

Query: 274 -CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               L A G+ I    L  VG +  +RI      D
Sbjct: 63  VPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 97


>gi|226198463|ref|ZP_03794031.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|225929520|gb|EEH25539.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 432

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 340 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 399

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 400 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 429


>gi|254301370|ref|ZP_04968814.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
 gi|157811448|gb|EDO88618.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
          Length = 432

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 340 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 399

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 400 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 429


>gi|212711702|ref|ZP_03319830.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM
           30120]
 gi|212685804|gb|EEB45332.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM
           30120]
          Length = 309

 Score = 49.6 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTTLKDVVTLK 260
               +I   +  + E     + + F  +       + L V +   +     T+ ++ TL+
Sbjct: 197 EGIFMIEQLAVAEDEQIDSAMEEEFVDETVRPFHLHGLTVKLTFVLGHSDITVGELDTLQ 256

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN--YTIRITDRINFDQKSL 311
            G V      ++    + AN + I   EL  +G +    + I   ++   K L
Sbjct: 257 PGTVYSIGENKEREVKVYANKQLIAEGELTYIGDSDELGLEIKRLVSLGDKRL 309


>gi|126458111|ref|YP_001076229.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|242311035|ref|ZP_04810052.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei 1106b]
 gi|126231879|gb|ABN95292.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei 1106a]
 gi|242134274|gb|EES20677.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei 1106b]
          Length = 436

 Score = 49.6 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 344 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 403

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 404 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 433


>gi|255023254|ref|ZP_05295240.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208]
          Length = 78

 Score = 49.6 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           + + + ID  +   K  +  ++ +K G V            ++ +GK I   E+      
Sbjct: 5   HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64

Query: 296 YTIRITD 302
             ++IT 
Sbjct: 65  MFVKITK 71


>gi|312958827|ref|ZP_07773346.1| type III secretion system rscQ [Pseudomonas fluorescens WH6]
 gi|311286597|gb|EFQ65159.1| type III secretion system rscQ [Pseudomonas fluorescens WH6]
          Length = 335

 Score = 49.6 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 1/121 (0%)

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK-TYQLNVNID 243
            ++  I++   +  L +             +       + E ++D F  +   +L++ + 
Sbjct: 212 RLHGDIDDETGTACLTLTSIEETFVDEHFTAPDYSEPVEDEPVVDVFGHEPFDELSMALT 271

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            R      TL ++  L  G V+         A L    + I   +L  V     ++++  
Sbjct: 272 VRCGTLNLTLGELRNLGPGSVLGITGYAPGVAGLYYGDRPIGQGQLVEVDGRLGLQVSRV 331

Query: 304 I 304
           +
Sbjct: 332 L 332


>gi|292488066|ref|YP_003530943.1| surface presentation of antigens protein SpaO [Erwinia amylovora
           CFBP1430]
 gi|292899277|ref|YP_003538646.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291199125|emb|CBJ46239.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291553490|emb|CBA20535.1| Surface presentation of antigens protein SpaO [Erwinia amylovora
           CFBP1430]
          Length = 307

 Score = 49.6 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GK 294
             L + I+  ++ K  TL ++ T++ G + P     +    +  N K     EL  +   
Sbjct: 226 SDLPIEIEFVLDSKSVTLAELDTIEPGTLFPLNDCAEQRVKIYLNRKFFARGELVALDNG 285

Query: 295 NYTIRITDR 303
           N  + I   
Sbjct: 286 NLAVEIKQV 294


>gi|167906945|ref|ZP_02494150.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei NCTC 13177]
          Length = 359

 Score = 49.6 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
            +  +L + +   I+     +  +  L+ G VI            L  +G+ +   EL  
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339

Query: 292 VGKNYTIRITDR 303
           VG++  +RI   
Sbjct: 340 VGEHLGVRIIRM 351


>gi|167567945|ref|ZP_02360861.1| SctQ [Burkholderia oklahomensis EO147]
 gi|167573181|ref|ZP_02366055.1| SctQ [Burkholderia oklahomensis C6786]
          Length = 431

 Score = 49.6 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             L   S    ++     L    A +     +L + +   I+     +  +  L+ G VI
Sbjct: 325 ILLKEFSMSEDADQADAGLAVATADEPARIGELELPVQFEIDTVSLPIDQLSVLEPGYVI 384

Query: 266 PFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                       +  +G+ +   EL  VG++  +RI   
Sbjct: 385 ELPVAVADARLRIVVHGQTVGFGELVAVGEHLGVRIIRM 423


>gi|167840285|ref|ZP_02466969.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia thailandensis MSMB43]
          Length = 187

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
                +++ +   I+    ++ ++  L+ G V+      +     L A G+ I    L  
Sbjct: 109 ADLGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQAIGGGRLVA 168

Query: 292 VGKNYTIRITDRINFD 307
           VG +  +RI      D
Sbjct: 169 VGAHLGVRIDRMAGDD 184


>gi|332159960|ref|YP_004296537.1| type III secretion system apparatus protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664190|gb|ADZ40834.1| Type III secretion system apparatus protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 315

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL   +   I      L D+  L +GQ +    +      +  +G+ +    L    
Sbjct: 241 ELEQLPQTLVMEIGRLTIPLADIKQLAVGQTLACQTQFYGEVNIRLHGQPVGRGRLLCCD 300

Query: 294 KNYTIRITD 302
           +   +RI  
Sbjct: 301 EQLVVRIDQ 309


>gi|167577438|ref|ZP_02370312.1| type III secretion system protein BsaV [Burkholderia thailandensis
           TXDOH]
          Length = 320

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  +  ++ T+  +     G V+P          + ANG+     EL +VG 
Sbjct: 242 IDALPVTLEFVLQDERVTVAQLARCHPGLVLPL-RGVPGEVTIRANGQPFGIGELIQVGD 300

Query: 295 NYTIRIT 301
              + + 
Sbjct: 301 QLAVEVK 307


>gi|167907267|ref|ZP_02494472.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei NCTC 13177]
          Length = 217

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 125 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 184

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 185 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 214


>gi|330862414|emb|CBX72573.1| hypothetical protein YEW_HJ33330 [Yersinia enterocolitica W22703]
          Length = 316

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL   +   I      L D+  L +GQ +    +      +  +G+ +    L    
Sbjct: 242 ELEQLPQTLVMEIGRLTIPLADIKQLAVGQTLACQTQFYGEVNIRLHGQPVGRGRLLCCD 301

Query: 294 KNYTIRITD 302
           +   +RI  
Sbjct: 302 EQLVVRIDQ 310


>gi|255018475|ref|ZP_05290601.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-515]
          Length = 64

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           ++      K  L+  ++     VI          +L+ NG  I    L RV  ++ I++T
Sbjct: 1   LEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMT 60

Query: 302 DRIN 305
           + + 
Sbjct: 61  ELVR 64


>gi|975754|gb|AAC43845.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 38/90 (42%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E ++E           QL V ++  ++ K  TL D+  +   Q++      +    
Sbjct: 209 QHIEEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I + ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298


>gi|167850342|ref|ZP_02475850.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei B7210]
          Length = 227

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 135 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 194

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 195 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 224


>gi|325927674|ref|ZP_08188902.1| HrcQ protein [Xanthomonas perforans 91-118]
 gi|325541875|gb|EGD13389.1| HrcQ protein [Xanthomonas perforans 91-118]
          Length = 304

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 12/166 (7%)

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--MTIENV----ASSFVLI 200
                     +  L             +    + +     +  +T  +V    A   VL 
Sbjct: 134 QPAWLAALRVNTRLRIGGRTASAALLQSLRPGDVLLHCTASAAVTSGDVLWGIAGGVVLR 193

Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
            P    L       S + Q+ +                +L + +   ++    +L  +  
Sbjct: 194 APVRLNLQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSG 250

Query: 259 LKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           L+ GQ++            L   G+ I +  L  VG++  ++I   
Sbjct: 251 LQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296


>gi|284007672|emb|CBA73390.1| type III secretion inner membrane protein YscQ,SpaO [Arsenophonus
           nasoniae]
          Length = 234

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
               N S +          QL + ++  +  +  +L  + + + G  +           L
Sbjct: 143 QDDHNASPESSTAIFD-LNQLALKVNFILQRQTFSLNTIKSWQTGTQLRLNSDAHCAIAL 201

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             NG+     EL +VG+   + +   ++ +Q+
Sbjct: 202 EINGQIFAKGELIQVGEQLAVELHTLLSTEQE 233


>gi|213615825|ref|ZP_03371651.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 158

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+   +   I      +  +  LK G V+P          +  N + I   EL   G
Sbjct: 82  ELEQIPQQVLFEIGRASLEIGQLRQLKTGNVLPVGGCFAPEVTIRVNDRIIGQGELIACG 141

Query: 294 KNYTIRITD 302
             + +RIT 
Sbjct: 142 NEFMVRITR 150


>gi|975758|gb|AAC43848.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 38/90 (42%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E ++E           QL V ++  ++ K  TL D+  +   Q++      +    
Sbjct: 209 QHIEEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I + ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298


>gi|313624713|gb|EFR94668.1| conserved domain protein [Listeria innocua FSL J1-023]
          Length = 78

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           + + + ID  +   K  +  ++ +K G V            ++ +GK I   E+      
Sbjct: 5   HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64

Query: 296 YTIRITD 302
             ++IT 
Sbjct: 65  MFVKITK 71


>gi|83717115|ref|YP_439032.1| type III secretion system protein BsaV [Burkholderia thailandensis
           E264]
 gi|167615589|ref|ZP_02384224.1| type III secretion system protein BsaV [Burkholderia thailandensis
           Bt4]
 gi|257142140|ref|ZP_05590402.1| type III secretion system protein BsaV [Burkholderia thailandensis
           E264]
 gi|83650940|gb|ABC35004.1| type III secretion system protein BsaV [Burkholderia thailandensis
           E264]
          Length = 320

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  +  ++ T+  +     G V+P          + ANG+     EL +VG 
Sbjct: 242 IDALPVTLEFVLQDERVTVAQLAGCHPGLVLPL-RGVPGEVTIRANGQPFGIGELIQVGD 300

Query: 295 NYTIRIT 301
              + + 
Sbjct: 301 QLAVEVK 307


>gi|325917012|ref|ZP_08179251.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536763|gb|EGD08520.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 345

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           PQ+ LL+T   + +    +      L          L + +   ++    +L  +  L+ 
Sbjct: 241 PQQMLLET---APAMHQDTPESDTSLS---TTDVAALELPVHLEVDQLALSLSVLSGLQP 294

Query: 262 GQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           GQ++            L   G+ I    L  VG +  ++I   
Sbjct: 295 GQILELSVPVDQADIRLVVYGQTIGVGRLLAVGDHLGVQILSM 337


>gi|260768787|ref|ZP_05877721.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972]
 gi|260616817|gb|EEX42002.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972]
          Length = 253

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 8/90 (8%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
            +     +  + Q +  +     +   +  NI+  +   + ++ DV  + +G  I     
Sbjct: 164 ELLDYFSDGLKKQKDFNVHDVQHQLNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY 223

Query: 271 EKTCAILSANGKEIYSCELGR-VGKNYTIR 299
                 ++   + ++  +L         ++
Sbjct: 224 --DLLDVNVENQTLFKGQLIVGENAQLGVK 251


>gi|163732489|ref|ZP_02139934.1| flagellar motor switch protein FliN, putative [Roseobacter
           litoralis Och 149]
 gi|161393849|gb|EDQ18173.1| flagellar motor switch protein FliN, putative [Roseobacter
           litoralis Och 149]
          Length = 97

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
           + + +   +   +  ++D+VTL    V+           L    + I    L    G   
Sbjct: 21  VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVDDPVDLYIGDRLIARGMLEEKEGDQS 80

Query: 294 KNYTIRITDRIN 305
               +R+T+ I+
Sbjct: 81  GQLIVRLTEVID 92


>gi|153950005|ref|YP_001402769.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152961500|gb|ABS48961.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 320

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 9/153 (5%)

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLISL 214
               L   +    L++       E    ++M   ++      +    PQ  +       +
Sbjct: 156 WQSGLVAGWCHLSLRQLQQLRPGEG-LRLSMAAELDKEACWLWHHASPQIYIKLEGGNRM 214

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNV-------NIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + Q  +E          A       V        +   I      L ++  L +GQ +  
Sbjct: 215 TIQQINEASDPLACGSRAESLPLAAVQFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
                    +  NG+ +    L R  +   +RI
Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDEQLVVRI 307


>gi|289433976|ref|YP_003463848.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|315301943|ref|ZP_07872944.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|289170220|emb|CBH26760.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313629685|gb|EFR97817.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|313639060|gb|EFS04047.1| conserved domain protein [Listeria seeligeri FSL S4-171]
          Length = 78

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           + + + ID  +   K  +  ++ +K G V            ++ +GK I   E+      
Sbjct: 5   HNIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILTKDGK 64

Query: 296 YTIRITD 302
             ++IT 
Sbjct: 65  MFVKITK 71


>gi|973269|gb|AAC43938.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 37/90 (41%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E ++E           QL V ++  +  K  TL ++  +   Q++      +    
Sbjct: 209 QHIEEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I + ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298


>gi|973273|gb|AAC43941.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 37/90 (41%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E ++E           QL V ++  +  K  TL ++  +   Q++      +    
Sbjct: 209 QHIEEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I + ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298


>gi|78045979|ref|YP_362154.1| HrcQ protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034409|emb|CAJ22054.1| HrcQ protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 304

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 12/166 (7%)

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--MTIENV----ASSFVLI 200
                     +  L             +    + +     +  +T  +V    A   VL 
Sbjct: 134 QPAWLAALRVNTRLRIGGRTASAALLQSLRPGDVLLHCTASAAVTSGDVLWGIAGGVVLR 193

Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
            P    L       S + Q+ +                +L + +   ++    +L  +  
Sbjct: 194 APVRLNLQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSG 250

Query: 259 LKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           L+ GQ++            L   G+ I +  L  VG++  ++I   
Sbjct: 251 LQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296


>gi|167915629|ref|ZP_02502720.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei 112]
          Length = 238

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 146 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 205

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 206 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 235


>gi|315126003|ref|YP_004068006.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913]
 gi|315014517|gb|ADT67855.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913]
          Length = 301

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 68/260 (26%), Gaps = 30/260 (11%)

Query: 50  FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109
                  DV+IS  S  +        S       +    +      F+           +
Sbjct: 57  LFNDSRFDVEISPCSHSTINSW-FKES--PRIFLACPLFAPTQGEAFLALDFQSAHKTAD 113

Query: 110 NLLGASHETIPQLYNR------SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163
             LG          +        LS  E ++  R        L + +   Q      E  
Sbjct: 114 LCLGGQFNNSDNSSHDYSPTTNELSATESRICGRL-------LQRQVQGIQGLLFR-ERS 165

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
             +  ++K+             +   +E+   S+ L +P                    Q
Sbjct: 166 ALLGEIQKSHALPEALQYLAFKVRFILESQVISWFLWLPISF----------FCAADSEQ 215

Query: 224 SEDLIDPFARKTYQL-NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
                D      +    V     +  KK TLK +     G V+P        A+ +   K
Sbjct: 216 DPASSDTLNTDMWAQFAVQGQIEMAKKKVTLKQLKACVAGGVLPIEL--NEAALFNLGHK 273

Query: 283 EIYSCELGRVGKNYTIRITD 302
           +I+  ++         +IT 
Sbjct: 274 QIFKGQVVEQEAGLAFQITQ 293


>gi|170026116|ref|YP_001722621.1| type III secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169752650|gb|ACA70168.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
           pseudotuberculosis YPIII]
          Length = 320

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 9/153 (5%)

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLISL 214
               L   +    L++       E    ++M   ++      +    PQ  +       +
Sbjct: 156 WQSGLVAGWCHLSLRQLQQLRPGEG-LRLSMAAELDKEACWLWHHASPQIYIKLEGGNRM 214

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNV-------NIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + Q  +E          A       V        +   I      L ++  L +GQ +  
Sbjct: 215 TIQQINEASDPLACGSRAESLPLAAVQFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
                    +  NG+ +    L R  +   +RI
Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDEQLVVRI 307


>gi|285018282|ref|YP_003375993.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473500|emb|CBA16003.1| probable xanthomonas secretion apparatus protein [Xanthomonas
           albilineans]
          Length = 346

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
             S   +           V +          L ++  L+ G V+P         ++ ANG
Sbjct: 268 ESSPIWVGEL-------PVELSFAFEPLALKLAELSALRPGDVVPLESGV--RLLIHANG 318

Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQ 308
           + +   EL  V       +T      +
Sbjct: 319 RPVGEAELVEVEGVLAAEVTAIHLKSE 345


>gi|300936201|ref|ZP_07151137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 21-1]
 gi|300458658|gb|EFK22151.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 21-1]
          Length = 315

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             L V I+  +  K   L ++  L   ++IP L   +    +  NG      EL  V   
Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIIPLLPEAEKNIEIRVNGALTGYGELVEVDDK 299

Query: 296 YTIRITDRINFDQKS 310
             + I   ++ +   
Sbjct: 300 LGVEIHSWLSGNNNV 314


>gi|254499105|ref|ZP_05111795.1| hypothetical protein LDG_3178 [Legionella drancourtii LLAP12]
 gi|254351644|gb|EET10489.1| hypothetical protein LDG_3178 [Legionella drancourtii LLAP12]
          Length = 234

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%)

Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
           D       +  V +   +   K ++  +  +++G V+   H   T   L    + +   E
Sbjct: 159 DSLDEALAEHTVKLCLELLPSKLSVNHLAGIQVGDVLSTTHPLSTPLRLICGNELLAQAE 218

Query: 289 LGRVGKNYTI 298
           LG    + +I
Sbjct: 219 LGYSAHHKSI 228


>gi|259908639|ref|YP_002648995.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
 gi|224964261|emb|CAX55768.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
 gi|283478611|emb|CAY74527.1| Surface presentation of antigens protein SpaO [Erwinia pyrifoliae
           DSM 12163]
          Length = 308

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              + +  D  +   +    L + I+  ++ K TTL ++ T++ G   P     +    +
Sbjct: 209 TDQQEEYRDEEETLHKW-SDLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKI 267

Query: 278 SANGKEIYSCELGRV-GKNYTIRITDR 303
             N K     EL  +   N  + I   
Sbjct: 268 YLNRKFFARGELVALDNGNLAVEIRQI 294


>gi|310767461|gb|ADP12411.1| Type III secretion apparatus [Erwinia sp. Ejp617]
          Length = 308

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              + +  D  +   +    L + I+  ++ K TTL ++ T++ G   P     +    +
Sbjct: 209 TDQQEEYRDEEETLHKW-SDLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKI 267

Query: 278 SANGKEIYSCELGRV-GKNYTIRITDR 303
             N K     EL  +   N  + I   
Sbjct: 268 YLNRKFFARGELVALDNGNLAVEIRQI 294


>gi|33596842|ref|NP_884485.1| putative type III secretion protein [Bordetella parapertussis
           12822]
 gi|33573543|emb|CAE37534.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 359

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294
            Q+ V +   +  ++ TL  + +L  G              ++ ANG  + S  L  +  
Sbjct: 286 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 345

Query: 295 NYTI 298
              +
Sbjct: 346 RIGV 349


>gi|315498407|ref|YP_004087211.1| surface presentation of antigens (spoa) protein [Asticcacaulis
           excentricus CB 48]
 gi|315416419|gb|ADU13060.1| surface presentation of antigens (SPOA) protein [Asticcacaulis
           excentricus CB 48]
          Length = 93

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            I   +      ++ ++ +  G VIP   RE     + AN   +   E+    +  +I +
Sbjct: 20  EISVLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEKISIVV 79

Query: 301 TD 302
           T 
Sbjct: 80  TR 81


>gi|315180490|gb|ADT87404.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
           11218]
          Length = 108

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 9/90 (10%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
            +     +  + Q +  I     +   +  NI+  +   + ++ DV  + +G  I     
Sbjct: 19  ELLDYFSDGLKKQKDFNIHDVQHQLNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY 78

Query: 271 EKTCAILSANGKEIYSCELGR-VGKNYTIR 299
                 ++   + ++  +L         ++
Sbjct: 79  --DLLDVNVENQTLFKGQLIVGENAQLGVK 106


>gi|33600616|ref|NP_888176.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33568215|emb|CAE32128.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
          Length = 359

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294
            Q+ V +   +  ++ TL  + +L  G              ++ ANG  + S  L  +  
Sbjct: 286 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 345

Query: 295 NYTI 298
              +
Sbjct: 346 RIGV 349


>gi|238759390|ref|ZP_04620555.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
 gi|238702417|gb|EEP94969.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
          Length = 311

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 2/92 (2%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF--ARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            + +        +       E L +         +L V +   +   +  L+++  ++ G
Sbjct: 201 VIEENIDNIEEVEETVPTLDEVLPENLPSHFDVTKLTVKLTFVLGHSEIPLEELAHIQPG 260

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            V      +     + AN + +   EL  +G 
Sbjct: 261 AVYSLGADKDREVKVYANKQLVAEGELVYIGD 292


>gi|259909717|ref|YP_002650073.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96]
 gi|224965339|emb|CAX56871.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96]
 gi|283479803|emb|CAY75719.1| Type III secretion protein HrcQa [Erwinia pyrifoliae DSM 12163]
          Length = 341

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTL 253
           L +P   LL     +  +    +  +E     F       +   L ++++ R      TL
Sbjct: 223 LQLPHHFLLNHLESTALNSADDDALNEGSQPEFLSGEERPQLASLPLSLEVRCGRTALTL 282

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++  L+ G V+   +     A L      I   EL  V  +
Sbjct: 283 GELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 324


>gi|261344592|ref|ZP_05972236.1| putative surface presentation of antigens protein [Providencia
           rustigianii DSM 4541]
 gi|282567506|gb|EFB73041.1| putative surface presentation of antigens protein [Providencia
           rustigianii DSM 4541]
          Length = 309

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               L V +   +   + +L ++  ++ G +      ++    + AN +     EL  +G
Sbjct: 230 NVNDLTVKLTFVLGHSEVSLAELNHMQPGTIFSIGENKEREVKVYANKQLFAEGELTYIG 289

Query: 294 KN--YTIRITDRINFDQKSL 311
           ++    + IT  ++   K L
Sbjct: 290 ESEELGLEITRLVSLGDKRL 309


>gi|33593241|ref|NP_880885.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|29603233|emb|CAC79578.1| bscQ [Bordetella pertussis Tohama I]
 gi|33563616|emb|CAE42517.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382650|gb|AEE67497.1| putative type III secretion protein [Bordetella pertussis CS]
          Length = 359

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294
            Q+ V +   +  ++ TL  + +L  G              ++ ANG  + S  L  +  
Sbjct: 286 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 345

Query: 295 NYTI 298
              +
Sbjct: 346 RIGV 349


>gi|167743329|ref|ZP_02416103.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 14]
          Length = 177

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
            +  +      P      ++ + +   I+    ++ ++  L+ G V+      +     L
Sbjct: 85  DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 144

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A G+ I    L  VG +  +RI      D
Sbjct: 145 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 174


>gi|16520043|ref|NP_444163.1| component RhcQ of type III secretion apparatus [Sinorhizobium
           fredii NGR234]
 gi|2494558|sp|P55719|Y4YK_RHISN RecName: Full=Probable translocation protein Y4yK
 gi|2182736|gb|AAB91950.1| component RhcQ of type III secretion apparatus [Sinorhizobium
           fredii NGR234]
          Length = 358

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 28/76 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +         +L ++ +   G V            + ANG+ I   ++ R+
Sbjct: 283 ADLDDIEIVLVFECGRWPISLGELRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRI 342

Query: 293 GKNYTIRITDRINFDQ 308
           G +  IR+  R+  + 
Sbjct: 343 GDDLGIRLRGRLACND 358


>gi|312597800|gb|ADQ89915.1| RscQ [Pseudomonas fluorescens]
          Length = 367

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 31/101 (30%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            E          ++  +    +E +      +   L + +  R    + TL ++  L  G
Sbjct: 263 AEAAEHPESAYAAADTEEAPMTEPVAAEVPERFDDLPLALTIRCGHLQLTLGELRNLAPG 322

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            V+         A L    + +   EL  V     ++I   
Sbjct: 323 AVLQVQGVAPGTAALFYGERALAHGELVEVDGRLGLQIAHV 363


>gi|313634375|gb|EFS00970.1| conserved domain protein [Listeria seeligeri FSL N1-067]
          Length = 78

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           + + + ID  +   K  +  ++ +K G V            ++ +GK I   E+      
Sbjct: 5   HSIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILTKDGK 64

Query: 296 YTIRITD 302
             ++IT 
Sbjct: 65  MFVKITK 71


>gi|89898774|ref|YP_515884.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
 gi|89332146|dbj|BAE81739.1| type III secretion flagellar motor switch domain [Chlamydophila
           felis Fe/C-56]
          Length = 371

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 225 EDLIDPFARKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSA 279
           E+ ++  +       +     +   ++    T+++ + L  G ++            L  
Sbjct: 288 EEPVEETSESLPAAPLPGNCKLVAEVSRYSLTVEEFLKLSQGSILNLNGVHPSRGVDLIL 347

Query: 280 NGKEIYSCELGRVGKNYTIRITDR 303
           NG ++   E+  +G    IR+ + 
Sbjct: 348 NGAKVGRGEIVSLGDVLGIRVLEV 371


>gi|330812431|ref|YP_004356893.1| type III secretion protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380539|gb|AEA71889.1| putative type III secretion protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 367

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 31/101 (30%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            E          ++  +    +E +      +   L + +  R    + TL ++  L  G
Sbjct: 263 AEAAEHPESAYAAADTEEAPMTEPVAAEVPERFDDLPLALTIRCGHLQLTLGELRNLAPG 322

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            V+         A L    + +   EL  V     ++I   
Sbjct: 323 AVLQVQGVAPGTAALFYGERALAHGELVEVDGRLGLQIAHV 363


>gi|310766419|gb|ADP11369.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcQ protein [Erwinia sp. Ejp617]
          Length = 338

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTL 253
           L +P   LL     +  +    +  +E     F       +   L ++++ R      TL
Sbjct: 220 LQLPHHFLLNHLESTALNSADDDALTEGSQPEFLSGEERPQLASLPLSLEVRCGRTALTL 279

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++  L+ G V+   +     A L      I   EL  V  +
Sbjct: 280 GELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 321


>gi|167840169|ref|ZP_02466853.1| type III secretion system protein BsaV [Burkholderia thailandensis
           MSMB43]
          Length = 168

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  ++ ++ T+  +     G V+P          + ANG      EL +VG+
Sbjct: 90  VAALPVTLEFVLHDERVTVAQLAGCHPGLVLPLRGAPGE-VTIRANGLPFGRGELIQVGE 148

Query: 295 NYTIRIT 301
              + + 
Sbjct: 149 QLAVEVK 155


>gi|312884809|ref|ZP_07744501.1| putative flagellar motor switch protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367461|gb|EFP95021.1| putative flagellar motor switch protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 272

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/128 (10%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
             + + +T +       + + Q+ +   +     + N+S  +       F     Q  + 
Sbjct: 154 IWVQLMITTKEAHGVIDIFLDQQLIDTLSAELELTPNESMYED------FCLSLTQTPIK 207

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           ++  ++ K   L ++++L+   ++P        A      + ++   +        +   
Sbjct: 208 LNIVLSKKTMPLSNLLSLRPNDILPIDLSSTAPAH--VGEEYLFRGRVAERDSQLVL--- 262

Query: 302 DRINFDQK 309
             I+ D++
Sbjct: 263 -IISNDKE 269


>gi|91791431|ref|YP_561082.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
 gi|91713433|gb|ABE53359.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
          Length = 103

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 26/74 (35%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             Q  + ++  I     ++ ++  LK   ++    +  +   L      I    L  V +
Sbjct: 30  LEQTKIELNVNIGDVSMSISELKELKENSIVKLAQKVDSEFELKWKDVVIAKGRLVAVDE 89

Query: 295 NYTIRITDRINFDQ 308
              + IT   + +Q
Sbjct: 90  YLALEITQVTSNEQ 103


>gi|238787476|ref|ZP_04631274.1| Type III secretion system apparatus protein [Yersinia frederiksenii
           ATCC 33641]
 gi|238724263|gb|EEQ15905.1| Type III secretion system apparatus protein [Yersinia frederiksenii
           ATCC 33641]
          Length = 307

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 23/68 (33%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L   +   I      L+++  L +GQ +    R      +  +G+ + S  L     
Sbjct: 234 LDDLPQTLVMEIGRLTLPLREIKQLAVGQTLACQTRCYGEVNIRLHGQPVGSGSLLSCDG 293

Query: 295 NYTIRITD 302
              +RI  
Sbjct: 294 ELVVRIEQ 301


>gi|163738044|ref|ZP_02145460.1| surface presentation of antigens (SPOA) protein [Phaeobacter
           gallaeciensis BS107]
 gi|163742560|ref|ZP_02149946.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
           2.10]
 gi|161384145|gb|EDQ08528.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
           2.10]
 gi|161388660|gb|EDQ13013.1| surface presentation of antigens (SPOA) protein [Phaeobacter
           gallaeciensis BS107]
          Length = 98

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302
              +  ++D+V L    ++    R +    L    + +   +L    G       +R+T+
Sbjct: 30  GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89

Query: 303 R 303
            
Sbjct: 90  I 90


>gi|118592625|ref|ZP_01550015.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614]
 gi|118434676|gb|EAV41327.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614]
          Length = 360

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 54/177 (30%), Gaps = 10/177 (5%)

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++    + ++            E +P                 ++++ V          +
Sbjct: 184 RMIPIQVERLVGTAELMWVEICELAPGDCILISEAAAADQLTVIASDRV----FAFEEVD 239

Query: 193 VASSFVLIIPQETLL-KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN--IDTRINLK 249
              S    +P + LL K+     +  +  E+   + ++   +   +  +   +  R+   
Sbjct: 240 EGWSCAKTVPLKQLLFKSRDAGETLLDNCESALPEFLEEVGKFVPEAPLKIGLSFRLGSA 299

Query: 250 KTTLKDVVTLKIGQVIPFLHREKT---CAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +  ++   + G +               + AN   I   +L RVG    +R++  
Sbjct: 300 NLSATEIANWRPGAIANLPDSLNESNTEVKVVANDTTIAQGDLVRVGDRVGVRLSRI 356


>gi|84621751|ref|YP_449123.1| HrcQ protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|12802688|gb|AAK08059.1|AF320050_3 HrcQ [Xanthomonas oryzae pv. oryzae]
 gi|9711592|dbj|BAB07861.1| HrcQ [Xanthomonas oryzae pv. oryzae]
 gi|84365691|dbj|BAE66849.1| HrcQ protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 304

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                   S + Q+ +                +L + +   ++    +L  +  L+ GQ+
Sbjct: 200 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 256

Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +            L   G+ I +  L  VG++  ++I   
Sbjct: 257 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296


>gi|330819400|ref|YP_004348262.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           gladioli BSR3]
 gi|327371395|gb|AEA62750.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           gladioli BSR3]
          Length = 474

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVG 293
              + + +   I+     L  +  L  G V+            L  +G+ +   EL  VG
Sbjct: 397 VGAIELPVQFEIDTVALPLDQLSALGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVG 456

Query: 294 KNYTIRITDR 303
           ++  +RI   
Sbjct: 457 EHLGVRIIRM 466


>gi|7288130|dbj|BAA92825.1| hrpD1 [Xanthomonas oryzae pv. oryzae]
 gi|24251297|gb|AAN46416.1| HrcQ [Xanthomonas oryzae pv. oryzae]
 gi|50428355|dbj|BAD29992.1| HrcQ [Xanthomonas oryzae pv. oryzae]
          Length = 304

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                   S + Q+ +                +L + +   ++    +L  +  L+ GQ+
Sbjct: 200 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 256

Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +            L   G+ I +  L  VG++  ++I   
Sbjct: 257 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296


>gi|254475007|ref|ZP_05088393.1| Surface presentation of antigens protein [Ruegeria sp. R11]
 gi|214029250|gb|EEB70085.1| Surface presentation of antigens protein [Ruegeria sp. R11]
          Length = 98

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302
              +  ++D+V L    ++    R +    L    + +   +L    G       +R+T+
Sbjct: 30  GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89

Query: 303 R 303
            
Sbjct: 90  I 90


>gi|299069227|emb|CBJ40487.1| type III secretion system apparatus protein HrcQ [Ralstonia
           solanacearum CMR15]
          Length = 361

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
             QL V +   + +    L ++  L+   V+    + +     L  +G+ +   +L  VG
Sbjct: 285 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 344

Query: 294 KNYTIRI 300
           +   ++I
Sbjct: 345 EQLGLQI 351


>gi|219566951|dbj|BAH04982.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
          Length = 354

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
             QL V +   + +    L ++  L+   V+    + +     L  +G+ +   +L  VG
Sbjct: 278 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 337

Query: 294 KNYTIRI 300
           +   ++I
Sbjct: 338 EQLGLQI 344


>gi|170690584|ref|ZP_02881751.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           graminis C4D1M]
 gi|170145019|gb|EDT13180.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           graminis C4D1M]
          Length = 446

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVG 293
             +L++ +   ++     L  +  L+ G V+            L  +G+ I   EL  VG
Sbjct: 369 IGELDLPVQFEVDTVALPLSQLYALRPGYVLELPTPVADAQLKLVTHGQTIGYGELVTVG 428

Query: 294 KNYTIRITDRINFD 307
            +  IRI    + D
Sbjct: 429 DHLGIRILRMAHGD 442


>gi|76152315|gb|ABA39816.1| HrcQ [Erwinia pyrifoliae]
          Length = 338

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR-----KTYQLNVNIDTRINLKKTTL 253
           L +P   LL     +  +    +  +E     F       +   L ++++ R      TL
Sbjct: 220 LQLPHHFLLNHLESTALNSADDDALNEGSQPEFLSGEDNPQLASLPLSLEVRCGRTALTL 279

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++  L+ G V+   +     A L      I   EL  V  +
Sbjct: 280 GELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 321


>gi|6708103|gb|AAF25800.1|AF172245_2 BscQ [Bordetella bronchiseptica]
          Length = 123

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294
            Q+ V +   +  ++ TL  + +L  G              ++ ANG  + S  L  +  
Sbjct: 50  DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 109

Query: 295 NYTI 298
              +
Sbjct: 110 RIGV 113


>gi|212702681|ref|ZP_03310809.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098]
 gi|212673953|gb|EEB34436.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098]
          Length = 398

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVG 293
              L + +   I      L ++  L  G  +       +    +   G+ +    L  VG
Sbjct: 309 VGALELPVVFEIGRLHLRLDELAALVPGHTLALGGETPSPVVDIRVAGQLLAQGRLVDVG 368

Query: 294 KNYTIRITDRINFDQK 309
               ++IT      + 
Sbjct: 369 GIPGVQITRMHAAGRD 384


>gi|8996040|gb|AAF82339.1|AF005744_18 YsaQ [Yersinia enterocolitica]
 gi|15088608|gb|AAK84119.1|AF369954_17 YsaQ [Yersinia enterocolitica]
          Length = 312

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF--ARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            + +       +++      E L +         +L V +   +   +  L+++  ++ G
Sbjct: 202 VIEENIDDMQETEDTVPTLDEVLPEYLPSRFDVAKLTVKLTFVLGHSEILLEELAHIQPG 261

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            V      +     + AN + +   EL  +G 
Sbjct: 262 SVYSLGADKDREVKVYANKQLVAEGELIYIGD 293


>gi|318607489|emb|CBY28987.1| type III secretion inner membrane protein (YscQ,homologous to
           flagellar export components) [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 316

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL   +   I      L D+  L +GQ +    +      +  +G+ +    L    
Sbjct: 242 ELEQLPQTLVMEIGRLTIPLADIKQLAVGQTLACQTQFYGEVNIRLHGQPVGRGSLLCCD 301

Query: 294 KNYTIRITD 302
           +   +RI  
Sbjct: 302 EQLVVRIDQ 310


>gi|331654352|ref|ZP_08355352.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli M718]
 gi|331047734|gb|EGI19811.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli M718]
          Length = 315

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +      +++  D       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 221 KKSEIEINDENDDQMINSYEELPVKIEFVLGKKVMNLYEIDELCAKRIISLLPESEKNIE 280

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEIHSWLSRNNNV 314


>gi|123443728|ref|YP_001007699.1| type III secretion apparatus protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090689|emb|CAL13565.1| type III secretion apparatus protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 312

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF--ARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            + +       +++      E L +         +L V +   +   +  L+++  ++ G
Sbjct: 202 VIEENIDDMQETEDTVPTLDEVLPEYLPSRFDVAKLTVKLTFVLGHSEILLEELAHIQPG 261

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            V      +     + AN + +   EL  +G 
Sbjct: 262 SVYSLGADKDREVKVYANKQLVAEGELIYIGD 293


>gi|167030913|gb|ABZ05781.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 389

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 25/75 (33%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            D        L V +  R      TL ++  L  G V+         A+L      + S 
Sbjct: 291 SDNVTENLPPLPVTLHIRCGSLTMTLAELQHLASGSVLTLRDVVPGQALLYHGDIALASG 350

Query: 288 ELGRVGKNYTIRITD 302
           +L  V     ++IT 
Sbjct: 351 DLVDVKGRLGLQITQ 365


>gi|300693807|ref|YP_003749780.1| type III secretion system apparatus protein hrcq [Ralstonia
           solanacearum PSI07]
 gi|299075844|emb|CBJ35153.1| type III secretion system apparatus protein HrcQ [Ralstonia
           solanacearum PSI07]
          Length = 355

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
             QL V +   + +    L ++  L+   V+    + +     L  +G+ +   +L  VG
Sbjct: 279 LEQLEVPVHLELAVMGMPLSELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338

Query: 294 KNYTIRI 300
           +   ++I
Sbjct: 339 EQLGLQI 345


>gi|58579705|ref|YP_198721.1| hypothetical protein XOO0082 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424299|gb|AAW73336.1| hrpD1 [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 334

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                   S + Q+ +                +L + +   ++    +L  +  L+ GQ+
Sbjct: 230 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 286

Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +            L   G+ I +  L  VG++  ++I   
Sbjct: 287 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 326


>gi|332280452|ref|ZP_08392865.1| surface presentation of antigens protein SpaO [Shigella sp. D9]
 gi|332102804|gb|EGJ06150.1| surface presentation of antigens protein SpaO [Shigella sp. D9]
          Length = 190

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  +       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 96  KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 155

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 156 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 189


>gi|111146916|gb|ABH07401.1| HrcQ [Xanthomonas oryzae pv. oryzicola]
          Length = 304

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                   S + Q+ +                +L + +   ++    +L  +  L+ GQ+
Sbjct: 200 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 256

Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +            L   G+ I +  L  VG++  ++I   
Sbjct: 257 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296


>gi|167584012|ref|ZP_02376400.1| type III secretion inner membrane protein SctQ [Burkholderia
           ubonensis Bu]
          Length = 144

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
                +++ +   I+    ++ ++  L+ G V+      +     L A G+ I    L  
Sbjct: 66  ADLGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVA 125

Query: 292 VGKNYTIRITDRINFD 307
           VG +  +RI      D
Sbjct: 126 VGAHLGVRIDRMAGDD 141


>gi|50121008|ref|YP_050175.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560423|gb|AAS20383.1| HrcQ [Pectobacterium atrosepticum]
 gi|49611534|emb|CAG74982.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 405

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 28/84 (33%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            D        L + +  R      TL ++  L  G V+         A L      + S 
Sbjct: 307 SDNVTESLPPLPITLHIRCGSLTMTLAELQHLASGSVLTLRDVVPGQAWLYHGDIALASG 366

Query: 288 ELGRVGKNYTIRITDRINFDQKSL 311
           +L  V     ++IT R +  +  L
Sbjct: 367 DLVDVEGRLGLQITQRFSTPKPML 390


>gi|4494847|gb|AAD21320.1| HrcQ [Xanthomonas euvesicatoria]
          Length = 268

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 12/166 (7%)

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--MTIENV----ASSFVLI 200
                     +  L             +    + +     +  +T  +V    A   VL 
Sbjct: 98  QPAWLAALRVNTRLRIGGRTASAALLQSLRPGDVLLHCTASAAVTSGDVLWGIAGGVVLR 157

Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
            P    L       S + Q+ +                +L + +   ++    +L  +  
Sbjct: 158 APVRLNLQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSG 214

Query: 259 LKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           L+ GQ++            L   G+ I +  L  VG++  ++I   
Sbjct: 215 LQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 260


>gi|300310128|ref|YP_003774220.1| type III secretion system protein [Herbaspirillum seropedicae SmR1]
 gi|300072913|gb|ADJ62312.1| type III secretion system protein [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +L + +   +     +L  +  L    V+           +++ G E+   E+  V    
Sbjct: 330 ELPLTLQVELGRLSLSLSQLRALGEQVVLELHGASAQALRITSAGVELGRGEVVSVDGRL 389

Query: 297 TIRITD 302
            +RI  
Sbjct: 390 GVRIVR 395


>gi|209920318|ref|YP_002294402.1| putative type III secretion protein [Escherichia coli SE11]
 gi|209913577|dbj|BAG78651.1| putative type III secretion protein [Escherichia coli SE11]
          Length = 190

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  +       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 96  KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 155

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 156 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 189


>gi|325921928|ref|ZP_08183739.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas
           gardneri ATCC 19865]
 gi|325547630|gb|EGD18673.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas
           gardneri ATCC 19865]
          Length = 321

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 42/165 (25%), Gaps = 12/165 (7%)

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF--VTTINMNMTIE----NVASSFVLII 201
               +    +  L             +    +          +        +    VL  
Sbjct: 152 PAWMSALRVTTRLRIGQRTAAAALLQSLRPGDVLLHALATAPVRSGELLWGIPGGAVLRA 211

Query: 202 PQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           P    L       + + Q+             A     L + +   ++    +L  +  L
Sbjct: 212 PVRLTLQQMILETAPTMQHDMPASDSSSP---ATDVAALELPVQLEVDQLALSLSVLSGL 268

Query: 260 KIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           + GQ++            L   G+ I    L  VG++  ++I   
Sbjct: 269 QPGQILELSVPVDQADIRLVVYGQTIGIGRLLAVGEHLGVQILSM 313


>gi|300950615|ref|ZP_07164517.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 116-1]
 gi|300958196|ref|ZP_07170350.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 175-1]
 gi|301643798|ref|ZP_07243835.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 146-1]
 gi|307139551|ref|ZP_07498907.1| surface presentation of antigens protein SpaO [Escherichia coli
           H736]
 gi|331643551|ref|ZP_08344682.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli H736]
 gi|300315148|gb|EFJ64932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 175-1]
 gi|300450095|gb|EFK13715.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 116-1]
 gi|301077831|gb|EFK92637.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 146-1]
 gi|309703223|emb|CBJ02558.1| type III secretion system protein [Escherichia coli ETEC H10407]
 gi|331037022|gb|EGI09246.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli H736]
          Length = 315

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  NG      EL  V     + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304


>gi|301026122|ref|ZP_07189596.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 196-1]
 gi|299879817|gb|EFI88028.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 196-1]
          Length = 315

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  NG      EL  V     + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304


>gi|312171086|emb|CBX79345.1| Type III secretion protein HrcQa [Erwinia amylovora ATCC BAA-2158]
          Length = 338

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   L ++++ R      TL ++  L+ G V+   +     A L      I   EL  V 
Sbjct: 260 QLASLPLSLEVRCGRTALTLGELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319

Query: 294 KN 295
            +
Sbjct: 320 GH 321


>gi|256024630|ref|ZP_05438495.1| surface presentation of antigens protein SpaO [Escherichia sp.
           4_1_40B]
          Length = 315

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  NG      EL  V     + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304


>gi|292487017|ref|YP_003529887.1| type III secretion protein HrcQa [Erwinia amylovora CFBP1430]
 gi|292900598|ref|YP_003539967.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|89474869|gb|AAB06004.2| HrcQ [Erwinia amylovora]
 gi|291200446|emb|CBJ47575.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552434|emb|CBA19479.1| Type III secretion protein HrcQa [Erwinia amylovora CFBP1430]
          Length = 338

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   L ++++ R      TL ++  L+ G V+   +     A L      I   EL  V 
Sbjct: 260 QLASLPLSLEVRCGRTALTLGELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319

Query: 294 KN 295
            +
Sbjct: 320 GH 321


>gi|293416109|ref|ZP_06658749.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B185]
 gi|291432298|gb|EFF05280.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B185]
          Length = 315

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 221 KKSESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIE 280

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  NG      EL  V     + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304


>gi|15803390|ref|NP_289423.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 EDL933]
 gi|15832980|ref|NP_311753.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 str. Sakai]
 gi|195936472|ref|ZP_03081854.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 str. EC4024]
 gi|217327510|ref|ZP_03443593.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7
           str. TW14588]
 gi|254794807|ref|YP_003079644.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 str. TW14359]
 gi|261226167|ref|ZP_05940448.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256579|ref|ZP_05949112.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12517368|gb|AAG57982.1|AE005515_4 typeIII secretion apparatus protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13363198|dbj|BAB37149.1| type III secretion protein EpaO [Escherichia coli O157:H7 str.
           Sakai]
 gi|217319877|gb|EEC28302.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7
           str. TW14588]
 gi|254594207|gb|ACT73568.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|320189200|gb|EFW63859.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 str. EC1212]
 gi|326339059|gb|EGD62874.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 str. 1044]
          Length = 328

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  +       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 234 KKSESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIE 293

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  NG      EL  V     + I
Sbjct: 294 IRVNGALTGYGELVEVDDKLGVEI 317


>gi|17549082|ref|NP_522422.1| Hrp conserved protein HRCQ [Ralstonia solanacearum GMI1000]
 gi|6066702|emb|CAB58248.1| HrpQ protein [Ralstonia solanacearum]
 gi|17431333|emb|CAD18012.1| hrp conserved protein hrcq [Ralstonia solanacearum GMI1000]
 gi|1097281|prf||2113360G hrpQ gene
          Length = 354

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
             QL V +   + +    L ++  L+   V+    + +     L  +G+ +   +L  VG
Sbjct: 278 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVSVRLVCHGQTLGHGQLVAVG 337

Query: 294 KNYTIRI 300
           +   ++I
Sbjct: 338 EQLGLQI 344


>gi|329889297|ref|ZP_08267640.1| type III secretion system protein [Brevundimonas diminuta ATCC
           11568]
 gi|328844598|gb|EGF94162.1| type III secretion system protein [Brevundimonas diminuta ATCC
           11568]
          Length = 209

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKN 295
              + +   +      LK +  L+ G ++P      +    L + G+      L  +G+ 
Sbjct: 135 DTPIAVTVDLGETAVPLKTLTELRPGAILPLTGLDAEMRVTLRSAGQAFARGRLVSLGEA 194

Query: 296 YTIRITDRINFDQ 308
           Y + I    +  +
Sbjct: 195 YAVLIDAVADPKE 207


>gi|224584669|ref|YP_002638467.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224469196|gb|ACN47026.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 299

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 223 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 282

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 283 TLGVEIHEWLSE 294


>gi|166714029|ref|ZP_02245236.1| hrpD1 [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 317

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                   S + Q+ +                +L + +   ++    +L  +  L+ GQ+
Sbjct: 213 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 269

Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +            L   G+ I +  L  VG++  ++I   
Sbjct: 270 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 309


>gi|157154771|ref|YP_001464198.1| type III secretion apparatus protein EpaO2 [Escherichia coli
           E24377A]
 gi|300820662|ref|ZP_07100813.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 119-7]
 gi|309793923|ref|ZP_07688348.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 145-7]
 gi|157076801|gb|ABV16509.1| type III secretion apparatus protein EpaO2 [Escherichia coli
           E24377A]
 gi|300526926|gb|EFK47995.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 119-7]
 gi|308122330|gb|EFO59592.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 145-7]
          Length = 190

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 30/94 (31%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 96  KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIK 155

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 156 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 189


>gi|973297|gb|AAC43959.1| SpaO [Salmonella enterica]
 gi|975742|gb|AAC43836.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E ++E            L V ++  +  K  TL ++  +   Q++      +    
Sbjct: 209 QHIEEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I + ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298


>gi|975746|gb|AAC43839.1| SpaO [Salmonella enterica]
 gi|975750|gb|AAC43842.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E ++E            L V ++  +  K  TL ++  +   Q++      +    
Sbjct: 209 QHIEEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I + ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298


>gi|83747859|ref|ZP_00944892.1| HrcQ [Ralstonia solanacearum UW551]
 gi|83725506|gb|EAP72651.1| HrcQ [Ralstonia solanacearum UW551]
          Length = 355

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
             QL V +   + +    L ++  L+   V+    + +     L  +G+ +   +L  VG
Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 338

Query: 294 KNYTIRI 300
           +   ++I
Sbjct: 339 EQLGLQI 345


>gi|300697462|ref|YP_003748123.1| type III secretion system apparatus protein HrcQ [Ralstonia
           solanacearum CFBP2957]
 gi|299074186|emb|CBJ53731.1| type III secretion system apparatus protein HrcQ [Ralstonia
           solanacearum CFBP2957]
          Length = 355

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
             QL V +   + +    L ++  L+   V+    + +     L  +G+ +   +L  VG
Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338

Query: 294 KNYTIRI 300
           +   ++I
Sbjct: 339 EQLGLQI 345


>gi|254465587|ref|ZP_05078998.1| Surface presentation of antigens protein [Rhodobacterales bacterium
           Y4I]
 gi|206686495|gb|EDZ46977.1| Surface presentation of antigens protein [Rhodobacterales bacterium
           Y4I]
          Length = 98

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302
              +  ++D+V+L    ++    R +    L    + +   +L    G       +R+T+
Sbjct: 30  GKARPLIRDLVSLGENAILTLDKRVEDPVDLYVGDRLVARGQLEELEGEQAGQLAVRLTE 89

Query: 303 R 303
            
Sbjct: 90  I 90


>gi|170018890|ref|YP_001723844.1| surface presentation of antigens protein SpaO [Escherichia coli
           ATCC 8739]
 gi|169753818|gb|ACA76517.1| type III secretion system apparatus protein YscQ/HrcQ [Escherichia
           coli ATCC 8739]
 gi|323941616|gb|EGB37796.1| YscQ/HrcQ family protein type III secretion lipoprotein
           [Escherichia coli E482]
          Length = 315

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  NG      EL  V     + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304


>gi|157162321|ref|YP_001459639.1| surface presentation of antigens protein SpaO [Escherichia coli HS]
 gi|157068001|gb|ABV07256.1| type III secretion apparatus protein EpaO [Escherichia coli HS]
          Length = 315

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  NG      EL  V     + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304


>gi|62181393|ref|YP_217810.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129026|gb|AAX66729.1| surface presentation of antigens; secretory proteins [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322715877|gb|EFZ07448.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 303

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|207739217|ref|YP_002257610.1| hrp protein hrcq [Ralstonia solanacearum IPO1609]
 gi|206592590|emb|CAQ59496.1| hrp conserved protein hrcq [Ralstonia solanacearum IPO1609]
          Length = 362

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
             QL V +   + +    L ++  L+   V+    + +     L  +G+ +   +L  VG
Sbjct: 286 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 345

Query: 294 KNYTIRI 300
           +   ++I
Sbjct: 346 EQLGLQI 352


>gi|188574346|ref|YP_001911275.1| type III secretion apparatus protein, YscQ/HrcQ family [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188518798|gb|ACD56743.1| type III secretion apparatus protein, YscQ/HrcQ family [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 273

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                   S + Q+ +                +L + +   ++    +L  +  L+ GQ+
Sbjct: 169 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 225

Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
           +            L   G+ I +  L  VG++  ++I   
Sbjct: 226 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 265


>gi|168235931|ref|ZP_02660989.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738216|ref|YP_002115843.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194713718|gb|ACF92939.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197290676|gb|EDY30030.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 303

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++ T+   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|188496341|ref|ZP_03003611.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli 53638]
 gi|188491540|gb|EDU66643.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli 53638]
          Length = 315

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  NG      EL  V     + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304


>gi|32454377|gb|AAP82990.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 303

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLVGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|253688596|ref|YP_003017786.1| type III secretion system apparatus protein YscQ/HrcQ
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755174|gb|ACT13250.1| type III secretion system apparatus protein YscQ/HrcQ
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 386

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 7/119 (5%)

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
              +T     S     +P            S  +  E   +   D        L V +  
Sbjct: 246 TFTITDMETVS-----MPSSATDTMFADPHSEASAFEFTQK--SDNVTESLPPLPVTLHL 298

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           R      TL ++  L  G V+         A L      + S +L  V     ++IT R
Sbjct: 299 RCGSLTMTLTELQHLASGSVLTLRDVVPGQAWLYYGDIALASGDLVDVEGRLGLQITQR 357


>gi|323530324|ref|YP_004232476.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. CCGE1001]
 gi|323387326|gb|ADX59416.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. CCGE1001]
          Length = 454

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
             +L++ +   ++     L  +  L+ G V+            L  +G+ I   EL  VG
Sbjct: 377 IGELDLPVQFEVDTVALPLSQLYALRPGYVLELPTPVAEAQLKLVTHGQTIGYGELVTVG 436

Query: 294 KNYTIRITDRINFD 307
            +  IRI    + D
Sbjct: 437 DHLGIRILRMAHGD 450


>gi|168820412|ref|ZP_02832412.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205342820|gb|EDZ29584.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320087296|emb|CBY97061.1| Surface presentation of antigens protein spaO [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 303

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|32454381|gb|AAP82992.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 303

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|307725659|ref|YP_003908872.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. CCGE1003]
 gi|307586184|gb|ADN59581.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. CCGE1003]
          Length = 511

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRV 292
           +  +L++ +   ++     L  +  L+ G V+            L  +G+ I   EL  V
Sbjct: 433 EIGELDLPVQFEVDTVALPLSQLYALRPGYVLELPTPVAEAQLKLVTHGQTIGYGELVTV 492

Query: 293 GKNYTIRITDRINFD 307
           G +  IRI    + D
Sbjct: 493 GDHLGIRILRMAHGD 507


>gi|204928363|ref|ZP_03219563.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204322685|gb|EDZ07882.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|322614291|gb|EFY11222.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621645|gb|EFY18498.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624506|gb|EFY21339.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628837|gb|EFY25620.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633436|gb|EFY30178.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635988|gb|EFY32696.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639696|gb|EFY36381.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646879|gb|EFY43382.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650647|gb|EFY47052.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654740|gb|EFY51059.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658961|gb|EFY55214.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664472|gb|EFY60666.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668279|gb|EFY64436.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673741|gb|EFY69842.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677802|gb|EFY73865.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681368|gb|EFY77400.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683770|gb|EFY79780.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323193841|gb|EFZ79044.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200311|gb|EFZ85393.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203186|gb|EFZ88215.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205567|gb|EFZ90532.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210078|gb|EFZ94981.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216381|gb|EGA01108.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221128|gb|EGA05559.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226950|gb|EGA11132.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230766|gb|EGA14884.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234883|gb|EGA18969.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238922|gb|EGA22972.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241622|gb|EGA25653.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248231|gb|EGA32167.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251185|gb|EGA35058.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256069|gb|EGA39807.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263204|gb|EGA46742.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264293|gb|EGA47799.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271119|gb|EGA54547.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 303

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++ T+   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|194442226|ref|YP_002042132.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|198245837|ref|YP_002216860.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205353834|ref|YP_002227635.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858153|ref|YP_002244804.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|60415909|sp|P0A1K7|SPAO_SALDU RecName: Full=Surface presentation of antigens protein SpaO
 gi|60415910|sp|P0A1K8|SPAO_SALEN RecName: Full=Surface presentation of antigens protein SpaO
 gi|973257|gb|AAC43935.1| SpaO [Salmonella enterica subsp. enterica serovar Dublin]
 gi|973265|gb|AAC43962.1| SpaO [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|975778|gb|AAC43854.1| SpaO [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|194400889|gb|ACF61111.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197940353|gb|ACH77686.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205273615|emb|CAR38602.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206709956|emb|CAR34310.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326628943|gb|EGE35286.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 303

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|300906598|ref|ZP_07124289.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 84-1]
 gi|301303010|ref|ZP_07209137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 124-1]
 gi|300401637|gb|EFJ85175.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 84-1]
 gi|300841674|gb|EFK69434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 124-1]
 gi|315256735|gb|EFU36703.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 85-1]
          Length = 315

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIE 280

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  NG      EL  V     + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304


>gi|973293|gb|AAC43956.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 35/90 (38%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E  +            QL V ++  +  K  TL ++  +   Q++      +    
Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I + ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298


>gi|975762|gb|AAC43851.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 35/90 (38%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E  +            QL V ++  +  K  TL ++  +   Q++      +    
Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I + ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298


>gi|161615803|ref|YP_001589768.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168261986|ref|ZP_02683959.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|161365167|gb|ABX68935.1| hypothetical protein SPAB_03594 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205349239|gb|EDZ35870.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|16766197|ref|NP_461812.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167550260|ref|ZP_02344017.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993126|ref|ZP_02574221.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168230961|ref|ZP_02656019.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471466|ref|ZP_03077450.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197264022|ref|ZP_03164096.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|730795|sp|P40699|SPAO_SALTY RecName: Full=Surface presentation of antigens protein SpaO
 gi|404290|emb|CAA51924.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|973261|gb|AAC43965.1| SpaO [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|975774|gb|AAC43863.1| SpaO [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16421439|gb|AAL21771.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194457830|gb|EDX46669.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197242277|gb|EDY24897.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205324834|gb|EDZ12673.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328724|gb|EDZ15488.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334615|gb|EDZ21379.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|261248027|emb|CBG25860.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995019|gb|ACY89904.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159450|emb|CBW18968.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913909|dbj|BAJ37883.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223440|gb|EFX48506.1| Surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323131243|gb|ADX18673.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989763|gb|AEF08746.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|218988951|gb|ACL13614.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. salamae serovar Sofia]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 35/90 (38%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E  +            QL V ++  +  K  TL ++  +   Q++      +    
Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I + ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298


>gi|973285|gb|AAC43950.1| SpaO [Salmonella enterica]
 gi|973289|gb|AAC43953.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 35/90 (38%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q+  E  +            QL V ++  +  K  TL ++  +   Q++      +    
Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           + ANG  + + EL ++     + I + ++ 
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298


>gi|326624622|gb|EGE30967.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 261

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 185 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 244

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 245 TLGVEIHEWLSE 256


>gi|168242628|ref|ZP_02667560.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168463974|ref|ZP_02697891.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194450652|ref|YP_002046851.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|200389219|ref|ZP_03215831.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|238909658|ref|ZP_04653495.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|194408956|gb|ACF69175.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195633160|gb|EDX51574.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|199606317|gb|EDZ04862.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205338000|gb|EDZ24764.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|197247897|ref|YP_002147788.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211600|gb|ACH48997.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|56414843|ref|YP_151918.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363771|ref|YP_002143408.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|32454369|gb|AAP82986.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454371|gb|AAP82987.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454379|gb|AAP82991.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|56129100|gb|AAV78606.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|189490720|gb|ACE00521.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267491|gb|ACF35726.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267493|gb|ACF35727.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267495|gb|ACF35728.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267497|gb|ACF35729.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267499|gb|ACF35730.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267501|gb|ACF35731.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267503|gb|ACF35732.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267505|gb|ACF35733.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267507|gb|ACF35734.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267509|gb|ACF35735.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267511|gb|ACF35736.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267513|gb|ACF35737.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267515|gb|ACF35738.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267517|gb|ACF35739.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267519|gb|ACF35740.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267521|gb|ACF35741.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267523|gb|ACF35742.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267525|gb|ACF35743.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267527|gb|ACF35744.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267529|gb|ACF35745.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267531|gb|ACF35746.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267533|gb|ACF35747.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267535|gb|ACF35748.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267537|gb|ACF35749.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267539|gb|ACF35750.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267541|gb|ACF35751.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267543|gb|ACF35752.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267545|gb|ACF35753.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|197095248|emb|CAR60799.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|293449186|ref|ZP_06663607.1| type III secretion protein SctQ [Escherichia coli B088]
 gi|291322276|gb|EFE61705.1| type III secretion protein SctQ [Escherichia coli B088]
 gi|323183416|gb|EFZ68813.1| surface presentation of antigens family protein [Escherichia coli
           1357]
          Length = 173

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  +       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 79  KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 138

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172


>gi|94496751|ref|ZP_01303326.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58]
 gi|94423764|gb|EAT08790.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58]
          Length = 93

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           V +   ++     L  +  ++ G V+P           + A G+ I + ++  VG +Y +
Sbjct: 25  VQLRFELDQTDVPLSRLQAVQQGGVLPLQDRDGALPVRIIAGGRAIAAGQIVSVGDSYGV 84

Query: 299 RITDRINF 306
            I   +  
Sbjct: 85  LIETVLKE 92


>gi|329942356|ref|ZP_08291166.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10]
 gi|332286998|ref|YP_004421899.1| secretion and cellular translocation protein Q [Chlamydophila
           psittaci 6BC]
 gi|313847595|emb|CBY16583.1| possible flagellar or type III secretion protein [Chlamydophila
           psittaci RD1]
 gi|325507164|gb|ADZ18802.1| secretion and cellular translocation protein Q [Chlamydophila
           psittaci 6BC]
 gi|328815266|gb|EGF85254.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10]
 gi|328914228|gb|AEB55061.1| type III secretion translocase SctQ [Chlamydophila psittaci 6BC]
          Length = 371

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 233 RKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSC 287
                  +     +    +    T+++ + L  G ++            L  NG ++   
Sbjct: 296 EALPAAPLPGNYKLVAEASRYSLTVEEFLNLSQGSILNLNGIHPSRGVDLVLNGAKVGRG 355

Query: 288 ELGRVGKNYTIRITDR 303
           E+  +G    IR+ + 
Sbjct: 356 EIVSLGDVLGIRVLEV 371


>gi|183600579|ref|ZP_02962072.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827]
 gi|188019856|gb|EDU57896.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827]
          Length = 308

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL---GR 291
              + + +   +   + TL ++  ++ G V      ++    + AN + I   EL   G 
Sbjct: 230 VNAMTIKLTFVLGQTEITLNELADIQPGAVYSIGENKEREVKVYANKQLIAEGELIYIGE 289

Query: 292 VGKNYTIRITD 302
             +   + IT 
Sbjct: 290 SDE-LGLEITR 299


>gi|300815708|ref|ZP_07095932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 107-1]
 gi|300531637|gb|EFK52699.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 107-1]
          Length = 173

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  +       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 79  KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 138

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172


>gi|16761668|ref|NP_457285.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143152|ref|NP_806494.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052435|ref|ZP_03345313.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213419312|ref|ZP_03352378.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213425707|ref|ZP_03358457.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580301|ref|ZP_03362127.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213649909|ref|ZP_03379962.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213853009|ref|ZP_03382541.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289829393|ref|ZP_06547005.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|2494557|sp|Q56022|SPAO_SALTI RecName: Full=Surface presentation of antigens protein SpaO
 gi|25354379|pir||AG0851 surface presentation of antigens protein (associated with type III
           secretion and virulence) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|975770|gb|AAC43860.1| SpaO [Salmonella enterica subsp. enterica serovar Typhi]
 gi|16503969|emb|CAD05998.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138785|gb|AAO70354.1| antigen presentation protein SpaO [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|32454373|gb|AAP82988.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454375|gb|AAP82989.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454383|gb|AAP82993.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|284007399|emb|CBA72809.1| type III secretion apparatus protein YscQ,HrcQ,SpaO [Arsenophonus
           nasoniae]
          Length = 292

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 30/73 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + + ++  +  +K  L ++  +  G+V+P     +    + ANG  I    +  +   
Sbjct: 220 DDIPITLEYILQKRKIPLLELENIFQGKVLPCDLAAENNVKIVANGVLIAKGNIIWIEDR 279

Query: 296 YTIRITDRINFDQ 308
             + IT   + ++
Sbjct: 280 LGVEITHLFHNEK 292


>gi|85058546|ref|YP_454248.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
 gi|84779066|dbj|BAE73843.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
          Length = 304

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GK 294
            ++ V ++  +      L ++  L+ G V       +    +  N + +   EL  +  +
Sbjct: 227 SRVPVTVEFVLEANSYPLAELDNLQPGTVFDLSENVEKNIKIFLNQQLVGHGELVTLEDE 286

Query: 295 NYTIRIT 301
              + IT
Sbjct: 287 RLAVEIT 293



 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 10/90 (11%)

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           L +P E L+                +   +             +   +   +    D+V 
Sbjct: 116 LALPGEDLIVHVADWPKQAFPQAQTASAWLKRL-------PFELRCVLGCSRLAALDLVR 168

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCE 288
           L  G ++           L+ NG+ I+SC 
Sbjct: 169 LDTGDLLLITRP---ELHLAVNGRAIFSCH 195


>gi|227114169|ref|ZP_03827825.1| type III secretion protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 385

 Score = 46.9 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 26/79 (32%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            D        L V +  R      TL ++  L  G V+         A L      + S 
Sbjct: 287 RDNVTESLPPLPVTLHLRCGSLTMTLAELQHLASGSVLTLRDVVPGQAWLYHGDIALASG 346

Query: 288 ELGRVGKNYTIRITDRINF 306
           +L  V     ++IT R + 
Sbjct: 347 DLVDVEGRLGLQITQRFSS 365


>gi|126738562|ref|ZP_01754267.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
 gi|126720361|gb|EBA17067.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
          Length = 98

 Score = 46.9 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302
              +  ++D+V L    ++    R +    L    + +   +L    G       +R+T+
Sbjct: 30  GKARPLIRDLVGLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMDGEQAGQLAVRLTE 89

Query: 303 R 303
            
Sbjct: 90  I 90


>gi|84785904|gb|ABC62091.1| secretion and cellular translocation protein Q [Chlamydophila
           psittaci]
          Length = 371

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 233 RKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSC 287
                  +     +    +    T+++ + L  G ++            L  NG ++   
Sbjct: 296 EALPAAPLPGNYKLVAEASRYSLTVEEFLNLSQGSILNLNGIHPSRGVDLVLNGAKVGRG 355

Query: 288 ELGRVGKNYTIRITDR 303
           E+  +G    IR+ + 
Sbjct: 356 EIVSLGDVLGIRVLEV 371


>gi|85059282|ref|YP_454984.1| type III secretion system protein [Sodalis glossinidius str.
           'morsitans']
 gi|84779802|dbj|BAE74579.1| putative type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 350

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L   +   +     T+ D+  L +G V+P   R    AIL  + + I   EL     
Sbjct: 269 LNALPQQVRVDVGELSLTVGDLRRLAVGDVVPVTGRFTPYAILRLHNQTIGQGELVSCDG 328

Query: 295 NYTIRITD 302
              +RIT 
Sbjct: 329 ALLVRITR 336


>gi|254255056|ref|ZP_04948373.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia dolosa AUO158]
 gi|124899701|gb|EAY71544.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia dolosa AUO158]
          Length = 311

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 25/75 (33%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L + ID  ++   T++ DV     G  +P     +    ++  G  +   EL  +  
Sbjct: 236 VSDLPIRIDFVLHRCTTSVSDVDAFAHGTFLPLAADAERRVEITTGGTVLAVGELVELDG 295

Query: 295 NYTIRITDRINFDQK 309
              + I       + 
Sbjct: 296 RLGVEIHQVARARRD 310


>gi|159045806|ref|YP_001534600.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
 gi|157913566|gb|ABV94999.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
          Length = 89

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +     T+++++ L+   V+    R +    L      I    L     
Sbjct: 12  LVGVPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARGVLEEDAD 71

Query: 295 --NYTIRITDRINFDQ 308
               ++R+T+ I+ ++
Sbjct: 72  SHRLSVRLTEVISPER 87


>gi|94987608|ref|YP_595541.1| putative translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731857|emb|CAJ55220.1| putative translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 368

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 26/70 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L++ +   +  +  T++++  L  G         +    L  NGK I    L  +  
Sbjct: 298 VSGLDLPVVFELERQFMTVQNIGLLAPGYTFALSVDVQAPVTLRVNGKAIGVGRLVDLNG 357

Query: 295 NYTIRITDRI 304
           +  +++   +
Sbjct: 358 SLGVQVVQVM 367


>gi|153215435|ref|ZP_01950019.1| conserved domain protein [Vibrio cholerae 1587]
 gi|153827945|ref|ZP_01980612.1| conserved domain protein [Vibrio cholerae 623-39]
 gi|124114729|gb|EAY33549.1| conserved domain protein [Vibrio cholerae 1587]
 gi|148876526|gb|EDL74661.1| conserved domain protein [Vibrio cholerae 623-39]
          Length = 71

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 30/66 (45%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + + ID  I     TL +++ L+ G ++      ++  +L +  + I +  L ++   + 
Sbjct: 1   MKIAIDVVIAHCSMTLDELLHLQKGNMVKVEDFVQSAVMLKSGNELIATGTLIKIDDQFA 60

Query: 298 IRITDR 303
           + I + 
Sbjct: 61  VSIDNV 66


>gi|300898066|ref|ZP_07116434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 198-1]
 gi|300358204|gb|EFJ74074.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 198-1]
          Length = 239

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             L V I+  +  K   L ++  L   ++I  L   +    +  NG      EL  V   
Sbjct: 164 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 223

Query: 296 YTIRITDRINFDQKS 310
             + I   ++ +   
Sbjct: 224 LGVEIHSWLSGNNNV 238


>gi|320202507|gb|EFW77077.1| surface presentation of antigens protein SpaO [Escherichia coli
           EC4100B]
          Length = 173

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  +       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 79  KKNESEIYDENDEQMIHSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 138

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172


>gi|51103201|gb|AAT96342.1| HrcQ-like protein [Pseudomonas viridiflava]
          Length = 354

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           L        + +  S   +++ +  F      L++ +  R      +L  + +L +G V+
Sbjct: 257 LDDIDEHDSAHEADSAEANDNDLQRFN----DLSMALTVRAGNLSLSLGQLRSLAVGSVL 312

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            F       A+L    + +   EL  V     ++IT  
Sbjct: 313 TFNGCTPGHAMLHHGERVLAHGELVDVEGRLGLQITRM 350


>gi|301027455|ref|ZP_07190792.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 69-1]
 gi|300394963|gb|EFJ78501.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 69-1]
          Length = 315

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
            I  S    ++      I+ F      L V I+  +  K   L ++  L   ++I  L  
Sbjct: 219 DIKKSESEINDENDYQQINSFE----DLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPE 274

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +    +  NG      EL  V     + I   ++ +   
Sbjct: 275 AEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 314


>gi|238786391|ref|ZP_04630319.1| Type III secretion system apparatus protein [Yersinia bercovieri
           ATCC 43970]
 gi|238712699|gb|EEQ04783.1| Type III secretion system apparatus protein [Yersinia bercovieri
           ATCC 43970]
          Length = 305

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L   +   I      L ++  L +GQ +           +  NG+ + S  L R G+
Sbjct: 235 LDHLPQTLVMEIGRIAVPLGEIKQLAVGQTLNCQTSVYGEVNIRLNGQPVGSGSLLRCGE 294

Query: 295 NYTIRITD 302
           +  +RI  
Sbjct: 295 DLVVRIDQ 302


>gi|153847524|ref|ZP_01993940.1| acetolactate synthase II large subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149744726|gb|EDM56194.1| acetolactate synthase II large subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 237

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 32/180 (17%)

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL--NQCISTTQESS 157
               ++ L +   GA+ E         L+  + +L +R    I   L          E  
Sbjct: 7   DTQTLVKLADRFYGANTERSVAT----LTASDLRLQERISRIIIGWLAPQDMWEA-CEYE 61

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
                                     + +N+T E    S  L +    +           
Sbjct: 62  ------------------APRGIGLCVQLNITFEGYQGSMYLKLDTHLIQTLIEQL---- 99

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAI 276
                   DL +PF R      V ++  ++ K   L DVV+LK   ++P           
Sbjct: 100 --ELQSDVDLYEPFCRSLESTPVRLNVVLSKKTMALSDVVSLKPDDIMPIYDALYDGGVE 157


>gi|120586839|ref|YP_961184.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris subsp. vulgaris DP4]
 gi|120564253|gb|ABM29996.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris DP4]
          Length = 475

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 2/96 (2%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQL--NVNIDTRINLKKTTLKDVVTLKIGQVIP 266
               + +        S+                V+I   +  +   L D+  L  G    
Sbjct: 317 VLDATPAPNTPESPMSDQQTPEVPAGLDTAALEVDIVFELERRTMKLNDLAALAPGYTFA 376

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                     L   G+ I    L  +     +++  
Sbjct: 377 LGTDPLAPVTLRVQGRNIGRGRLVDLDGTPGVQVLH 412


>gi|284922804|emb|CBG35892.1| type III secretion system protein [Escherichia coli 042]
          Length = 315

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
            I  S    ++      I+ F      L V I+  +  K   L ++  L   ++I  L  
Sbjct: 219 DIKKSESEINDENDYQQINSFE----DLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPE 274

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +    +  NG      EL  V     + I   ++ +   
Sbjct: 275 AEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 314


>gi|325261315|ref|ZP_08128053.1| chemotaxis protein CheC, inhibitor of MCP methylation [Clostridium
           sp. D5]
 gi|324032769|gb|EGB94046.1| chemotaxis protein CheC, inhibitor of MCP methylation [Clostridium
           sp. D5]
          Length = 203

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 42/160 (26%), Gaps = 9/160 (5%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK----ENFVFSQASL 88
            I S LG +            M+  ++I   + +  ++  +  S                
Sbjct: 13  DILSELGNIGTGNAVSSLSAMMERPIEIGIPNIRLVRYQDVFESLGIQEALQTGILIQVK 72

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                 F           +L+ +LG +   +       L  +EK L       +     +
Sbjct: 73  GQLQGMFLFLMDEAFTWAVLKTMLGGADHCLT-----CLDEMEKSLLSELGNIMCGSYIR 127

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            ++       ++        +      +       ++ ++
Sbjct: 128 ALAQLTGMETDVSVPDMCIDMGGAILGVPLARHLKVSDSI 167


>gi|110677671|ref|YP_680678.1| flagellar motor switch protein FliN, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453787|gb|ABG29992.1| flagellar motor switch protein FliN, putative [Roseobacter
           denitrificans OCh 114]
          Length = 97

 Score = 46.6 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG---- 293
           + + +   +   +  ++D+VTL    V+      +    L    + I    L        
Sbjct: 21  VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVEDPVDLYIGDRLIARGMLEEKDDDQS 80

Query: 294 KNYTIRITDRIN 305
               +R+T+ I+
Sbjct: 81  GQLIVRLTEVID 92


>gi|330809245|ref|YP_004353707.1| flagellar motor switch protein FliM-like protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377353|gb|AEA68703.1| Putative flagellar motor switch protein FliM-like protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 243

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELG 290
            +      V +  R+ L   ++ ++  L+ G  +           +  A G  I    L 
Sbjct: 170 KQALGNARVKLSVRLPLASLSIGEMRDLRPGDTLRASALLADPVSVQLAEGPVIAGGYLA 229

Query: 291 RVGKNYTIRI 300
           +      +++
Sbjct: 230 KQHGQVAVQL 239


>gi|229827373|ref|ZP_04453442.1| hypothetical protein GCWU000182_02761 [Abiotrophia defectiva ATCC
           49176]
 gi|229788311|gb|EEP24425.1| hypothetical protein GCWU000182_02761 [Abiotrophia defectiva ATCC
           49176]
          Length = 208

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 35/150 (23%), Gaps = 6/150 (4%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL---- 88
            +   LG +            ++  VD++        F  +              L    
Sbjct: 15  DVLRELGNIGAGNATTALSSMLNTKVDMNVPKVDLLGFDELHEIMGGAETIVVGILVTLD 74

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +                 L++ L G    T P+     L  +     K     IS     
Sbjct: 75  ADIDGMMMFMMKTKSAFGLVDILFGRPVGTTPEDA--ELDEMSLSALKELGNIISGAYIS 132

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            +S+    + N    Y    +      +  
Sbjct: 133 SLSSMTNLTINQSIPYLSIDMAGAILSVPA 162


>gi|329850252|ref|ZP_08265097.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
           C19]
 gi|328840567|gb|EGF90138.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
           C19]
          Length = 71

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%)

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +      ++ ++ +  G VIP   RE     + AN   +   E+    +  +I +T 
Sbjct: 3   LGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEKISIVVTK 59


>gi|182440970|dbj|BAG24095.1| HrcQ [Pseudomonas cichorii]
          Length = 354

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%)

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +   L + +  R      +L  + +L +G V+ F       A+L    + +   EL  
Sbjct: 279 MERFNDLALALTLRAGNLSLSLGQLRSLSVGSVLTFNGCAPGHAMLFHGERALAHGELVD 338

Query: 292 VGKNYTIRITDR 303
           V     ++IT  
Sbjct: 339 VEGRLGLQITRM 350


>gi|262274302|ref|ZP_06052113.1| putative Type III secretion protein Spa33 [Grimontia hollisae CIP
           101886]
 gi|262220865|gb|EEY72179.1| putative Type III secretion protein Spa33 [Grimontia hollisae CIP
           101886]
          Length = 71

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + + +D  I     TL ++  L  G+++      ++  +L +  + + +  L +V   Y 
Sbjct: 1   MKIALDVVIAHCNLTLDELNQLNKGKMLKIDDFVQSEVMLKSGNELVATGRLIKVDDQYA 60

Query: 298 IRIT 301
           I + 
Sbjct: 61  ITVD 64


>gi|324119903|gb|EGC13782.1| type III secretion protein SctQ [Escherichia coli E1167]
          Length = 134

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  +       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 40  KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 99

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 100 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 133


>gi|51103118|gb|AAT96261.1| HrcQ-like protein [Pseudomonas viridiflava]
 gi|51103160|gb|AAT96302.1| HrcQ-like protein [Pseudomonas viridiflava]
          Length = 354

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   L++ +  R      +L  + +L +G V+ F       A+L    + +   EL  V
Sbjct: 280 QRFNDLSMALTVRAGNLSLSLGQLRSLAVGSVLTFNGCTPGHAMLHHGERVLAHGELVDV 339

Query: 293 GKNYTIRITDR 303
                ++IT  
Sbjct: 340 EGRLGLQITRM 350


>gi|289810465|ref|ZP_06541094.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 223

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 147 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMND 206

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 207 TLGVEIHEWLSE 218


>gi|293412213|ref|ZP_06654936.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B354]
 gi|291468984|gb|EFF11475.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B354]
          Length = 315

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             L V I+  +  K   L ++  L   ++I  L   +    +  NG      EL  V   
Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299

Query: 296 YTIRITDRINFDQKS 310
             + I   ++ +   
Sbjct: 300 LGVEIHSWLSGNNNV 314


>gi|330957489|gb|EGH57749.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 135

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 1/100 (1%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFAR-KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                +  +   +    E   +         L + +  R    + TL ++  L  G V+ 
Sbjct: 35  PDDEYAEQASGYAPADDERQDEQDESPALDSLELELTLRCGELRLTLAELRRLDAGSVLE 94

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                   A L    + +   EL  V     ++IT  +  
Sbjct: 95  VSGVAPGHATLCHGEQVVAEGELVDVEGRLGLQITRLVTR 134


>gi|218706363|ref|YP_002413882.1| surface presentation of antigens protein SpaO [Escherichia coli
           UMN026]
 gi|298382090|ref|ZP_06991687.1| type III secretion inner membrane protein [Escherichia coli
           FVEC1302]
 gi|331674343|ref|ZP_08375103.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli TA280]
 gi|218433460|emb|CAR14362.1| Type III secretion apparatus protein [Escherichia coli UMN026]
 gi|298277230|gb|EFI18746.1| type III secretion inner membrane protein [Escherichia coli
           FVEC1302]
 gi|331068437|gb|EGI39832.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli TA280]
          Length = 315

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             L V I+  +  K   L ++  L   ++I  L   +    +  NG      EL  V   
Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299

Query: 296 YTIRITDRINFDQKS 310
             + I   ++ +   
Sbjct: 300 LGVEIHSWLSGNNNV 314


>gi|188534037|ref|YP_001907834.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
 gi|188029079|emb|CAO96947.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 309

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 4/118 (3%)

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRI 246
           I++ +    +   +  +L                 ED       K      L+V I+  +
Sbjct: 177 IQHQSGYLQIGSKKIFILDFVDKKEIVVLDKLTDYEDHYRDEEEKLFSWSDLSVEIEFVL 236

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG-KNYTIRITDR 303
           + K  TL ++  +  G ++P     +    +  N K     EL  +   N  + I   
Sbjct: 237 DSKSYTLTELDAIHPGMILPLNQDAEKRVKIYLNKKFFARGELVALESGNLAVEINQI 294


>gi|975766|gb|AAC43857.1| SpaO [Salmonella enterica subsp. enterica serovar Typhisuis]
          Length = 303

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEVMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRITDRINF 306
              + I + ++ 
Sbjct: 287 TLGVEIHEWLSE 298


>gi|331678848|ref|ZP_08379522.1| typeIII secretion apparatus protein [Escherichia coli H591]
 gi|331073678|gb|EGI44999.1| typeIII secretion apparatus protein [Escherichia coli H591]
          Length = 134

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 30/94 (31%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 40  KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIK 99

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 100 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 133


>gi|62184686|ref|YP_219471.1| type III secretion system protein [Chlamydophila abortus S26/3]
 gi|62147753|emb|CAH63497.1| possible flagellar or type III secretion protein [Chlamydophila
           abortus S26/3]
          Length = 371

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 233 RKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSC 287
                  +     +    +    T+++ + L  G ++            L  NG ++   
Sbjct: 296 EALPAAPLPGNYKLVAEASRYSLTVEEFLHLSQGSILNLNGIHPSRGVDLILNGAKVGRG 355

Query: 288 ELGRVGKNYTIRITDR 303
           E+  +G    IR+ + 
Sbjct: 356 EIVSLGDVLGIRVLEV 371


>gi|15042141|gb|AAK81922.1|AF292566_6 RscQB [Pseudomonas fluorescens]
          Length = 133

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 3/119 (2%)

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + MT+   A +   I       +      + +   E  ++        +       ++ R
Sbjct: 15  LTMTVGRCALTLTSIEETSVDEEFIAPHYAGEEDDEPVTDVFGHEPFDELSMA---LNVR 71

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 TL ++  L  G V+         A L    + I   +L  V     ++++  +
Sbjct: 72  CGTLNLTLGELRNLAPGAVLGIAGYAPGMAGLYYGDRPIGQGQLVEVDGRLGLQLSRVM 130


>gi|323978517|gb|EGB73599.1| YscQ/HrcQ family protein type III secretion lipoprotein
           [Escherichia coli TW10509]
          Length = 315

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             L V I+  +  K   L ++  L   ++I  L   +    +  NG      EL  V   
Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299

Query: 296 YTIRITDRINFDQKS 310
             + I   ++ +   
Sbjct: 300 LGVEIHSWLSGNNNV 314


>gi|167573309|ref|ZP_02366183.1| type III secretion system protein BsaV [Burkholderia oklahomensis
           C6786]
          Length = 320

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  +  ++ T+  + +   G V+P          + ANG+     EL +VG+
Sbjct: 242 IDALPVTLEFVLQDERVTVAQLASCHPGLVLPVRGAPGE-VTIRANGRPFGCGELIQVGE 300

Query: 295 NYTIRIT 301
              + + 
Sbjct: 301 QLAVEVK 307


>gi|323966656|gb|EGB62088.1| YscQ/HrcQ family protein type III secretion lipoprotein
           [Escherichia coli M863]
 gi|327251617|gb|EGE63303.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli STEC_7v]
          Length = 315

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             L V I+  +  K   L ++  L   ++I  L   +    +  NG      EL  V   
Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299

Query: 296 YTIRITDRINFDQKS 310
             + I   ++ +   
Sbjct: 300 LGVEIHSWLSGNNNV 314


>gi|331669597|ref|ZP_08370443.1| typeIII secretion apparatus protein [Escherichia coli TA271]
 gi|331063265|gb|EGI35178.1| typeIII secretion apparatus protein [Escherichia coli TA271]
          Length = 113

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  +       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 19  KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPESEKNIE 78

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 79  IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 112


>gi|51103053|gb|AAT96199.1| HrcQb [Pseudomonas viridiflava]
          Length = 186

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 218 NKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           + SE   ++             L +++  R      TL  +  L  G ++         A
Sbjct: 95  HNSETADDEQSQAVTEPAAFESLTLDLTLRCGELTLTLAALRRLDAGTILEVAGIAPGHA 154

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            L    + +   EL  V     ++IT  +  
Sbjct: 155 TLCHGERVVAEGELVDVDGRLGLQITRMVTQ 185


>gi|167566199|ref|ZP_02359115.1| type III secretion system protein BsaV [Burkholderia oklahomensis
           EO147]
          Length = 326

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V ++  +  ++ T+  + +   G V+P          + ANG+     EL +VG+
Sbjct: 248 IDALPVTLEFVLQDERVTVAQLASCHPGLVLPVRGAPGE-VTIRANGRPFGCGELIQVGE 306

Query: 295 NYTIRIT 301
              + + 
Sbjct: 307 QLAVEVK 313


>gi|293406355|ref|ZP_06650281.1| type III secretion inner membrane protein [Escherichia coli
           FVEC1412]
 gi|291426361|gb|EFE99393.1| type III secretion inner membrane protein [Escherichia coli
           FVEC1412]
          Length = 308

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             L V I+  +  K   L ++  L   ++I  L   +    +  NG      EL  V   
Sbjct: 233 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 292

Query: 296 YTIRITDRINFDQKS 310
             + I   ++ +   
Sbjct: 293 LGVEIHSWLSGNNNV 307


>gi|218674848|ref|ZP_03524517.1| type III secretion system translocation protein [Rhizobium etli
           GR56]
 gi|327192840|gb|EGE59766.1| type III secretion system translocation protein [Rhizobium etli
           CNPAF512]
          Length = 339

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +       +  L+ + T+  G V            + A G+ I   E+  V  
Sbjct: 269 VDSIPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDG 328

Query: 295 NYTIRITDRIN 305
              +R+T   +
Sbjct: 329 LSAVRVTALHD 339


>gi|299822274|ref|ZP_07054160.1| flagellar motor switch protein [Listeria grayi DSM 20601]
 gi|299815803|gb|EFI83041.1| flagellar motor switch protein [Listeria grayi DSM 20601]
          Length = 82

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 22/67 (32%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ + ID  +      + +++ LK G +            +   G  I   E+      
Sbjct: 5   NEIPLQIDFELGRTNQQVGNLLDLKKGTIFRLECSTANVVKIVIAGTCIGYGEILTKDGK 64

Query: 296 YTIRITD 302
             ++I  
Sbjct: 65  LFVKIVK 71


>gi|268592376|ref|ZP_06126597.1| putative surface presentation of antigens protein [Providencia
           rettgeri DSM 1131]
 gi|291312162|gb|EFE52615.1| putative surface presentation of antigens protein [Providencia
           rettgeri DSM 1131]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 12/132 (9%)

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
                    E +     L+ P+             Q                   ++N+ 
Sbjct: 189 VLARFQKQDEGLLMIEELVAPESEEEFVFPEEDEMQEIVRP----------FNVKEMNIK 238

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN--YTIR 299
           +   +     T+ ++  ++ G +      ++    + AN + I   EL  +G +    + 
Sbjct: 239 LTFVLGHSDITVDELSKMEPGYIYSIGENKEREVKVYANKQFIAEGELIYIGNSDELGLE 298

Query: 300 ITDRINFDQKSL 311
           IT  ++   K +
Sbjct: 299 ITHVVSLGDKRV 310


>gi|76574804|gb|ABA47278.1| HrcQ [Pseudomonas cichorii]
          Length = 354

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   L + +  R      +L  + +L +G V+ F       A+L    + +   EL  V
Sbjct: 280 ERFNDLALALTLRAGNLSLSLGQLRSLSVGSVLTFNGCAPGNAMLFHGERALAHGELVDV 339

Query: 293 GKNYTIRITDR 303
                ++IT  
Sbjct: 340 EGRLGLQITRM 350


>gi|21492904|ref|NP_659979.1| type III secretion system translocation protein [Rhizobium etli CFN
           42]
 gi|21467329|gb|AAM54992.1| type III secretion system translocation protein [Rhizobium etli CFN
           42]
          Length = 339

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +       +  L+ + T+  G V            + A G+ I   E+  V  
Sbjct: 269 VDSIPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDG 328

Query: 295 NYTIRITDRIN 305
              +R+T   +
Sbjct: 329 LSAVRVTALHD 339


>gi|207724581|ref|YP_002254978.1| hrp protein hrcq [Ralstonia solanacearum MolK2]
 gi|206589803|emb|CAQ36764.1| hrp conserved protein hrcq [Ralstonia solanacearum MolK2]
          Length = 362

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
             QL V +   + +    L ++  L+   V+    + +     L  +G+ +   +L  VG
Sbjct: 286 LEQLEVPVHLELAVMGMPLAELAALQRQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 345

Query: 294 KNYTIRI 300
           +   ++I
Sbjct: 346 EQLGLQI 352


>gi|94968672|ref|YP_590720.1| surface presentation of antigens (SPOA) protein [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550722|gb|ABF40646.1| surface presentation of antigens (SPOA) protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 109

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 220 SENQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
                    +    +           +   + + + T++ ++ L+ G V+     + T  
Sbjct: 21  QNESGAKQSEDIRSEGMNSFRHLQCTVTLELPVPRFTVRQMLELRPGAVVDTCWSQATDL 80

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
            L  NG  +   E   V   Y +R+T+
Sbjct: 81  PLRVNGALLAWSEFEVVDNRYGVRLTE 107


>gi|330940700|gb|EGH43711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
          pisi str. 1704B]
          Length = 98

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 11/78 (14%)

Query: 5  SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
              N+ P            R+                +   + ++        +    D
Sbjct: 25 QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINEQFARYTRISMFNLLRRSAD 78

Query: 60 ISYTSCQSGKFSHIIHSF 77
          ++    Q  KF   +HS 
Sbjct: 79 VAVGGVQVMKFGEYVHSL 96


>gi|307310519|ref|ZP_07590167.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|306909414|gb|EFN39909.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
          Length = 113

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  +       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 19  KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 78

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 79  IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 112


>gi|34500876|gb|AAQ73904.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 379

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 25/75 (33%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            D        L V +  R      TL ++  L  G V+      +  A L      + S 
Sbjct: 281 SDNVTENLPPLPVTLHIRCGSLTMTLTELQHLASGSVLTLRDVVQGQAWLYHGDIALASG 340

Query: 288 ELGRVGKNYTIRITD 302
           +L  V     ++IT 
Sbjct: 341 DLVDVEGRLGLQITQ 355


>gi|146305086|ref|YP_001185551.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
 gi|145573287|gb|ABP82819.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
          Length = 133

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 200 IIPQETLLKTTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRI--NLKKTTLK 254
            +P+    +   + L  Q    + E+ S       A      ++ +   +       ++ 
Sbjct: 21  ALPEGFEERPGEMHLEGQEFAPQDEHASAVEPQQMAALGSIAHLPLQLTLRCGQLTLSVD 80

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            +  L  G V+         A L    + +   EL  V     ++IT  
Sbjct: 81  QLRQLGSGSVLEIHGVAPGHATLCHGERVVGEGELVDVDGRLGLQITRM 129


>gi|28901204|ref|NP_800859.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153835872|ref|ZP_01988539.1| conserved domain protein [Vibrio parahaemolyticus AQ3810]
 gi|260362762|ref|ZP_05775631.1| conserved domain protein [Vibrio parahaemolyticus K5030]
 gi|260880050|ref|ZP_05892405.1| conserved domain protein [Vibrio parahaemolyticus AN-5034]
 gi|260895167|ref|ZP_05903663.1| conserved domain protein [Vibrio parahaemolyticus Peru-466]
 gi|28809717|dbj|BAC62692.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149750626|gb|EDM61371.1| conserved domain protein [Vibrio parahaemolyticus AQ3810]
 gi|308085747|gb|EFO35442.1| conserved domain protein [Vibrio parahaemolyticus Peru-466]
 gi|308092016|gb|EFO41711.1| conserved domain protein [Vibrio parahaemolyticus AN-5034]
 gi|308112219|gb|EFO49759.1| conserved domain protein [Vibrio parahaemolyticus K5030]
          Length = 71

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 29/61 (47%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + V +D  I   + +L ++  L  G+++      ++  +L +  + + + +L +V   Y 
Sbjct: 1   MKVELDVVIAHCQLSLDELNQLSKGKMVKIEDFVQSQVMLKSGNELVATGQLFKVDDQYA 60

Query: 298 I 298
           +
Sbjct: 61  V 61


>gi|82795277|gb|ABB91646.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tagetis]
          Length = 135

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                I    Q++ +  S             L +++  R    + TL ++  L  G V+ 
Sbjct: 41  EPDEPIGPDEQDEQDEHSPL------SAVDSLPLDLTLRCGELRLTLAELRRLDAGTVLE 94

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                   A L    + +   EL  V     ++IT 
Sbjct: 95  VSGIAPGYATLCHGERVVAEGELVDVDGRLGLQITR 130


>gi|29839806|ref|NP_828912.1| type III secretion system protein [Chlamydophila caviae GPIC]
 gi|29834153|gb|AAP04790.1| type III secretion translocase SctQ [Chlamydophila caviae GPIC]
          Length = 371

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           +    +    T+++ + L  G V+ F          L  NG ++   E+  +G    IR+
Sbjct: 309 LVAEASRYSLTVEEFLKLTQGSVLNFNGVHPSRGVDLILNGAKVGRGEIVSLGDVLGIRV 368

Query: 301 TDR 303
            + 
Sbjct: 369 LEV 371


>gi|51102998|gb|AAT96145.1| HrcQb [Pseudomonas viridiflava]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 218 NKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             SE   ++             L +++  R      TL  +  L  G ++         A
Sbjct: 95  QNSETADDEQSQAVTEPAAFESLTLDLTLRCGELTLTLAALRRLDAGTILEVAGIAPGHA 154

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            L    + +   EL  V     ++IT  +  
Sbjct: 155 TLCHGERVVAEGELVDVDGRLGLQITRMVTQ 185


>gi|188992473|ref|YP_001904483.1| HrcQ protein [Xanthomonas campestris pv. campestris str. B100]
 gi|167734233|emb|CAP52441.1| HrcQ protein [Xanthomonas campestris pv. campestris]
          Length = 335

 Score = 45.4 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 45/164 (27%), Gaps = 10/164 (6%)

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
               +    +  L             +    + +        +   +   +  IP   +L
Sbjct: 166 PAWLSALRVTTRLRIGQRTATAALLQSLRPGDVLLHALATAPV--RSGELLWGIPGGAVL 223

Query: 208 --KTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
                L       ++    +  +        A     L + +   ++    +L  +  L+
Sbjct: 224 RAPVRLTLQQMILETAPTMQHDMPASDSSSSATDVAALELPVQLEVDQLALSLSVLSGLQ 283

Query: 261 IGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
            GQ++            L   G+ I    L  VG++  ++I   
Sbjct: 284 PGQILELSVPVDQADIRLVVYGQTIGIGRLLAVGEHLGVQILSM 327


>gi|21230684|ref|NP_636601.1| HrcQ protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769321|ref|YP_244083.1| HrcQ protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|21112272|gb|AAM40525.1| HrcQ protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574653|gb|AAY50063.1| HrcQ protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 304

 Score = 45.4 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 45/164 (27%), Gaps = 10/164 (6%)

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
               +    +  L             +    + +        +   +   +  IP   +L
Sbjct: 135 PAWLSALRVTTRLRIGQRTATAALLQSLRPGDVLLHALATAPV--RSGELLWGIPGGAVL 192

Query: 208 --KTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
                L       ++    +  +        A     L + +   ++    +L  +  L+
Sbjct: 193 RAPVRLTLQQMILETAPTMQHDMPASDSSSSATDVAALELPVQLEVDQLALSLSVLSGLQ 252

Query: 261 IGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
            GQ++            L   G+ I    L  VG++  ++I   
Sbjct: 253 PGQILELSVPVDQADIRLVVYGQTIGIGRLLAVGEHLGVQILSM 296


>gi|238764051|ref|ZP_04625006.1| Type III secretion system apparatus protein [Yersinia kristensenii
           ATCC 33638]
 gi|238697722|gb|EEP90484.1| Type III secretion system apparatus protein [Yersinia kristensenii
           ATCC 33638]
          Length = 292

 Score = 45.4 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  QL   +   I      L D+  L +GQ +           +  +G+ + S  L    
Sbjct: 218 QLEQLPQTLIMEIGRLTLPLSDIKQLDVGQTLACQTHLYGEVNIRLHGQIVGSGSLLCCD 277

Query: 294 KNYTIRITD 302
               +RI  
Sbjct: 278 GQMVVRIDQ 286


>gi|227357592|ref|ZP_03841945.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
 gi|227162302|gb|EEI47306.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + I   +  K  ++  +  L  G+             + ANGK I   EL ++
Sbjct: 234 NSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELIKI 293

Query: 293 GKNYTIRITD 302
                + I  
Sbjct: 294 KDMLAVEINK 303


>gi|115360603|ref|YP_777740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria AMMD]
 gi|115285931|gb|ABI91406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria AMMD]
          Length = 326

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRV 292
           +  QL++ +   I+     +  +  L+ G V+            L   G+ I   EL  V
Sbjct: 249 EISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSV 308

Query: 293 GKNYTIRITD 302
           G +  +R+  
Sbjct: 309 GDHLGVRLVQ 318


>gi|197286518|ref|YP_002152390.1| type III secretion system protein [Proteus mirabilis HI4320]
 gi|194684005|emb|CAR45295.1| type III secretion system protein [Proteus mirabilis HI4320]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + I   +  K  ++  +  L  G+             + ANGK I   EL ++
Sbjct: 234 NSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELIKI 293

Query: 293 GKNYTIRITD 302
                + I  
Sbjct: 294 KDMLAVEINK 303


>gi|330444061|ref|YP_004377047.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum
           E58]
 gi|328807171|gb|AEB41344.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum
           E58]
          Length = 371

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 7/62 (11%), Positives = 22/62 (35%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +      + + + L  G ++           +  +G ++   E+  +G    IR+ 
Sbjct: 310 LVAEVARYGLAVDEFLKLAPGSILNLGVHPSRGVDIILDGAKVGRGEILALGDVLGIRVL 369

Query: 302 DR 303
           + 
Sbjct: 370 EV 371


>gi|254502219|ref|ZP_05114370.1| putative surface presentation of antigens protein [Labrenzia
           alexandrii DFL-11]
 gi|222438290|gb|EEE44969.1| putative surface presentation of antigens protein [Labrenzia
           alexandrii DFL-11]
          Length = 88

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 30/74 (40%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++NV+I   +      +  ++ +  G VI     E     + AN   +   ++  +G+ 
Sbjct: 5   DEINVDISVVLGENHMPVHQLLRMGRGAVIDLDVDEDDDVKIYANNTLVAKGQVVLLGER 64

Query: 296 YTIRITDRINFDQK 309
             I IT+ +    +
Sbjct: 65  IGISITEVLMRPPE 78


>gi|149926087|ref|ZP_01914350.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105]
 gi|149825375|gb|EDM84586.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105]
          Length = 359

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 24/67 (35%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + ++      K    ++ +++ G +I           L   G  I   EL        +
Sbjct: 293 QIELEIHAGKTKILFNELCSVQEGTLIELREHALPMVTLCVMGSPILEGELVHFQDQLMV 352

Query: 299 RITDRIN 305
           ++T R++
Sbjct: 353 QVTKRLD 359


>gi|229515157|ref|ZP_04404617.1| hypothetical protein VCB_002814 [Vibrio cholerae TMA 21]
 gi|229529205|ref|ZP_04418595.1| hypothetical protein VCG_002298 [Vibrio cholerae 12129(1)]
 gi|254285289|ref|ZP_04960254.1| conserved domain protein [Vibrio cholerae AM-19226]
 gi|71480614|gb|AAZ32236.1| VcsQ2 [Vibrio cholerae non-O1/non-O139]
 gi|150424561|gb|EDN16497.1| conserved domain protein [Vibrio cholerae AM-19226]
 gi|229332979|gb|EEN98465.1| hypothetical protein VCG_002298 [Vibrio cholerae 12129(1)]
 gi|229347862|gb|EEO12821.1| hypothetical protein VCB_002814 [Vibrio cholerae TMA 21]
          Length = 71

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 29/64 (45%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + V +D  I     +L ++  L  G+++      ++  +L +  + + + +L +V   Y 
Sbjct: 1   MKVALDVVIAHCNLSLDELNQLSKGKMVKIEDFVQSQVMLKSGNELVATGQLIKVDDQYA 60

Query: 298 IRIT 301
           + + 
Sbjct: 61  VTVD 64


>gi|51103052|gb|AAT96198.1| HrcQa [Pseudomonas viridiflava]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 12/90 (13%)

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
             ++      + + +   +    L  P  TLL+   ++   Q + +   +          
Sbjct: 114 APDDASFGCRVQVRLGGESLHAHLHSPSHTLLRLLHLAPW-QARYKPVDDTW-------- 164

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
               V     I     TL ++ +L+ G V+
Sbjct: 165 ---PVTTPLIIGELVLTLNELASLRPGDVV 191


>gi|323180306|gb|EFZ65858.1| surface presentation of antigens family protein [Escherichia coli
           1180]
          Length = 134

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 30/86 (34%)

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           ++  +       +L V I+  +  K   L ++  L   ++I  L   +    +  NG   
Sbjct: 48  DENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIRVNGALT 107

Query: 285 YSCELGRVGKNYTIRITDRINFDQKS 310
              EL  V     + I   ++ +   
Sbjct: 108 GYGELVEVDDKLGVEIHSWLSGNNNV 133


>gi|119947193|ref|YP_944873.1| hypothetical protein Ping_3591 [Psychromonas ingrahamii 37]
 gi|119865797|gb|ABM05274.1| hypothetical protein Ping_3591 [Psychromonas ingrahamii 37]
          Length = 266

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
                +    + V     +  +   L D+ +L IG VI         A  S     ++  
Sbjct: 188 KASIEKSLLSVEVEGYVTMMSRTLKLGDISSLNIGDVISMEMH--DHAFFSIGDTTVFRG 245

Query: 288 ELGRVGKNYTIRITDRINFDQ 308
           ++    +     + D+   DQ
Sbjct: 246 KISTQNERLLFTVNDQQENDQ 266


>gi|190894059|ref|YP_001984353.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
 gi|190699720|gb|ACE93803.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
          Length = 339

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +       +  L+ + T+  G V            + A G+ I   E+  V  
Sbjct: 269 VDSIPIKLVFDAGRLELPLRALETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDG 328

Query: 295 NYTIRITDRIN 305
              +R+T   +
Sbjct: 329 LSAVRVTALHD 339


>gi|254253711|ref|ZP_04947028.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia dolosa AUO158]
 gi|124898356|gb|EAY70199.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia dolosa AUO158]
          Length = 388

 Score = 45.0 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRV 292
           +  QL++ +   I+     +  +  L+ G V+            L   G+ I   EL  V
Sbjct: 311 EISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSV 370

Query: 293 GKNYTIRITD 302
           G +  +R+  
Sbjct: 371 GDHLGVRLVQ 380


>gi|227328492|ref|ZP_03832516.1| type III secretion protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 297

 Score = 45.0 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 23/75 (30%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            D        L V +  R      TL  +  L  G V+         A L      + S 
Sbjct: 199 SDNVTENLPPLPVTLHIRCGSLTMTLAKLQHLASGSVLTLRDVVPGQAWLYHGDIALASG 258

Query: 288 ELGRVGKNYTIRITD 302
           +L  V     ++IT 
Sbjct: 259 DLVDVEGRLGLQITQ 273


>gi|304414275|ref|ZP_07395643.1| type III secretion system protein [Candidatus Regiella insecticola
           LSR1]
 gi|304283489|gb|EFL91885.1| type III secretion system protein [Candidatus Regiella insecticola
           LSR1]
          Length = 329

 Score = 44.6 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L   +   I      ++D+  L +GQ +           +  +G+++ S  L R G+
Sbjct: 258 LDALEKTLVMEIGRLDMKIEDIKALSVGQTLACESSCYGEVGIRLDGQQVGSGNLVRCGE 317

Query: 295 NYTIRITD 302
              +RI  
Sbjct: 318 ELVVRIDR 325


>gi|71388160|gb|AAZ31294.1| EpaO [Escherichia coli]
          Length = 315

 Score = 44.6 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 26/84 (30%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  D        L V I+  +  K   L +   L   ++I  L   +    
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYETDELCAKRIISLLPESEKNIE 280

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  NG      EL  V     + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304


>gi|307947531|ref|ZP_07662864.1| hypothetical protein TRICHSKD4_6282 [Roseibium sp. TrichSKD4]
 gi|307769349|gb|EFO28577.1| hypothetical protein TRICHSKD4_6282 [Roseibium sp. TrichSKD4]
          Length = 377

 Score = 44.6 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +         T  ++V LK+G  +PF   E     +  NG++  S  L        I
Sbjct: 311 ELMLSFVPAKLAMTDNEIVALKVGTELPFQRPENGAVEILCNGEKAGSGNLVLQDGCMGI 370

Query: 299 RITDR 303
           ++ + 
Sbjct: 371 KVQEI 375


>gi|172064927|ref|YP_001815639.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MC40-6]
 gi|171997169|gb|ACB68086.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MC40-6]
          Length = 374

 Score = 44.6 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVG 293
             QL++ +   I+     +  +  L+ G V+            L   G+ I   EL  VG
Sbjct: 298 ISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSVG 357

Query: 294 KNYTIRITD 302
            +  +R+  
Sbjct: 358 DHLGVRLVQ 366


>gi|289663758|ref|ZP_06485339.1| HrcQ protein [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289668180|ref|ZP_06489255.1| HrcQ protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 268

 Score = 44.6 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
                L + +   ++     L  +  L+ GQ++            L   G+ I +  L  
Sbjct: 189 TDVAALELPVQLEVDQLALPLSVLSGLQPGQILELSVPIDQADIRLVVYGQTIGTGRLLA 248

Query: 292 VGKNYTIRITDR 303
           VG++  ++I   
Sbjct: 249 VGEHLGVQILSM 260


>gi|108809073|ref|YP_652989.1| flagellar motor switch protein [Yersinia pestis Antiqua]
 gi|108780986|gb|ABG15044.1| flagellar motor switch protein [Yersinia pestis Antiqua]
          Length = 126

 Score = 44.6 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKD 255
           F + I    + +      +   K+  ++  L +        +L V + ++++    TL +
Sbjct: 13  FSIFIDAPHIDRLIDTIKTKNEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAE 72

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ LK G +I     E     +    + ++S  +       
Sbjct: 73  LMALKEGDIISASLPEYFP--VFIGKEALFSAAITENRGKL 111


>gi|170698359|ref|ZP_02889433.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria IOP40-10]
 gi|170136698|gb|EDT04952.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria IOP40-10]
          Length = 374

 Score = 44.6 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVG 293
             QL++ +   I+     +  +  L+ G V+            L   G+ I   EL  VG
Sbjct: 298 ISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSVG 357

Query: 294 KNYTIRITD 302
            +  +R+  
Sbjct: 358 DHLGVRLVQ 366


>gi|332981460|ref|YP_004462901.1| MCP methylation inhibitor CheC [Mahella australiensis 50-1 BON]
 gi|332699138|gb|AEE96079.1| CheC, inhibitor of MCP methylation [Mahella australiensis 50-1 BON]
          Length = 205

 Score = 44.6 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/162 (7%), Positives = 44/162 (27%), Gaps = 9/162 (5%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS---HIIHSF 77
           +    G       +   +G +          + +   V++     +   F     ++   
Sbjct: 1   MVDIDGLNSFEIDVLREIGNIGAGNAATALAKMLSKKVNMHVPEVRIMDFKNVPDVLGGA 60

Query: 78  KENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           ++  +    +       +  +         L++ ++G      P   NR L+ ++    +
Sbjct: 61  EQPVMGVYLNFEGDVEGSVLLVMDEASAHILIDMMMGR-----PIDTNRPLNDIDLSAVQ 115

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
                +++     +ST  +             +      +  
Sbjct: 116 ELGNILTSSYLGALSTLAKLDVRPSIPCLAIDMAGAILSVPA 157


>gi|330950823|gb|EGH51083.1| type III secretion protein HrcQb [Pseudomonas syringae Cit 7]
          Length = 133

 Score = 44.2 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 26/70 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L +++  R    + TL ++  L  G ++         A L    + +   EL  V  
Sbjct: 61  LDSLELDLTLRCGELRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120

Query: 295 NYTIRITDRI 304
              ++IT  +
Sbjct: 121 RLGLQITRLV 130


>gi|322432987|ref|YP_004210236.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321165214|gb|ADW70918.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 100

 Score = 44.2 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    L   +   +++   T+  ++ L  G ++     + T   L  NG  +   E   V
Sbjct: 29  KLVPWLPCTLALEVSVVGFTVGSLLKLTKGSLVQTSCHQSTDIPLHVNGILMAWTEFEVV 88

Query: 293 GKNYTIRITDRI 304
           G+    RITD +
Sbjct: 89  GERLAARITDLV 100


>gi|14422436|dbj|BAB60843.1| epaO2 [Escherichia coli]
          Length = 173

 Score = 44.2 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +       ++  +       +L V I+  +  K   L ++  L   ++I  L   +    
Sbjct: 79  KKNESEIYDENDEQMINSFEELPVKIEFVLVKKIMNLYEIDELCAKRIISLLPESEKNIE 138

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG      EL  V     + I   ++ +   
Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172


>gi|312962467|ref|ZP_07776958.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6]
 gi|311283394|gb|EFQ61984.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6]
          Length = 109

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 27/75 (36%)

Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
              +      +++++  +  +  + K +     G+V+P          +  NG+     E
Sbjct: 27  RDLSPSIRPSSMHLEILLQEQLVSRKRLAAFAPGKVLPLAPTVIHGVEVRVNGQLFALGE 86

Query: 289 LGRVGKNYTIRITDR 303
           L ++     + + + 
Sbjct: 87  LVQLEDRLGVELHEV 101


>gi|326794363|ref|YP_004312183.1| surface presentation of antigens (SPOA) protein [Marinomonas
           mediterranea MMB-1]
 gi|326545127|gb|ADZ90347.1| surface presentation of antigens (SPOA) protein [Marinomonas
           mediterranea MMB-1]
          Length = 142

 Score = 43.9 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 31/89 (34%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           S  +  +++SE       +K     + +         +  ++  L IG V+     +   
Sbjct: 32  SDASDHQSESEPAPSTILKKYPDAPLELTLNAGRISASFDELSQLNIGSVLVATGEKAGY 91

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR 303
           A +    + I   EL  V     I+IT  
Sbjct: 92  ATMYHQQQAIARGELVNVEGRLGIQITHV 120


>gi|238793337|ref|ZP_04636963.1| Type III secretion system apparatus protein [Yersinia intermedia
           ATCC 29909]
 gi|238727306|gb|EEQ18834.1| Type III secretion system apparatus protein [Yersinia intermedia
           ATCC 29909]
          Length = 304

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
              QL   +   I      L D+  L +GQ +           +  +G+ + S  L    
Sbjct: 229 ALEQLPQTLVMEIGRLTLPLSDIKQLAVGQTLDCKTAFYGEVNIRLHGQSVGSGSLLCCD 288

Query: 294 KNYTIRITD 302
           +   +RI  
Sbjct: 289 EQLIVRIEQ 297


>gi|217077807|ref|YP_002335525.1| CheY-P phosphatase CheC [Thermosipho africanus TCF52B]
 gi|217037662|gb|ACJ76184.1| CheY-P phosphatase CheC [Thermosipho africanus TCF52B]
          Length = 205

 Score = 43.5 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 57/199 (28%), Gaps = 20/199 (10%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN----FVFSQ 85
           +       +G +            +   VDIS  S +    S I   F+           
Sbjct: 8   SQLDFLKEIGNIGSGNAATALSTMIGKKVDISVPSTKVVPISQIPFIFENPEEIVCAIKM 67

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                      +  ++N V  + + L G++ E I       L      + K     +   
Sbjct: 68  KMREDVEGEILLILNSNTVKEINKILTGSTLEDITS-----LDEFSASMLKEIGNIMCGS 122

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-------EFVTTINMNMTIENVASSFV 198
               +S       N +       +        +       +++  I  ++ IE++     
Sbjct: 123 YVTALSGFTGFFINPDPPELAVDMISAVLAEVSLSVSTTEDYILLIETSIKIEDIDKELT 182

Query: 199 ---LIIP-QETLLKTTLIS 213
              L++P +E+L K     
Sbjct: 183 GYLLLLPNEESLEKILKKL 201


>gi|62286914|sp|Q60235|HRCQB_PSESY RecName: Full=Type III secretion protein HrcQb
 gi|818890|gb|AAB05074.1| HrpU [Pseudomonas syringae pv. syringae]
 gi|148562539|gb|ABQ88358.1| HrcQb [Pseudomonas syringae pv. syringae]
          Length = 133

 Score = 43.5 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 26/70 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L +++  R    + TL ++  L  G ++         A L    + +   EL  V  
Sbjct: 61  LDSLELDLTLRCGDLRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120

Query: 295 NYTIRITDRI 304
              ++IT  +
Sbjct: 121 RLGLQITRLV 130


>gi|66044460|ref|YP_234301.1| type III secretion protein HrcQb [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255167|gb|AAY36263.1| type III secretion protein HrcQb [Pseudomonas syringae pv. syringae
           B728a]
          Length = 132

 Score = 43.5 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 26/70 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L +++  R    + TL ++  L  G ++         A L    + +   EL  V  
Sbjct: 60  LDSLELDLTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 119

Query: 295 NYTIRITDRI 304
              ++IT  +
Sbjct: 120 RLGLQITRLV 129


>gi|327401343|ref|YP_004342182.1| CheC, inhibitor of MCP methylation [Archaeoglobus veneficus SNP6]
 gi|327316851|gb|AEA47467.1| CheC, inhibitor of MCP methylation [Archaeoglobus veneficus SNP6]
          Length = 198

 Score = 43.5 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 6/135 (4%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ---ASLSSWSSNFFIGC 99
            + + +     + +DV +  T       S I     +  +         +  S +  +  
Sbjct: 19  ARRVAENLSAMLGMDVQMKITKIDFVTLSDIPEEIGDEEMVGVYLMFHGTP-SGHLMVLF 77

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
                  +   LL    E          + ++K         I++      +   ++  +
Sbjct: 78  PVASAKKVASLLLAGIGEDNGTGEG--FTDLDKSAISEVGNIITSSFIDGWANVLKTEID 135

Query: 160 LEDFYDIDYLKKNTN 174
           +   + I  +     
Sbjct: 136 ISTPHLIHDMGSAVI 150


>gi|94986980|ref|YP_594913.1| putative translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731229|emb|CAJ54592.1| putative translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 360

 Score = 43.5 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 22/71 (30%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V I   I    TTL ++     G          +  ILS   K I +  L        I
Sbjct: 290 EVPISFEIGKYNTTLSELEHFIEGHTFTLELDIHSPVILSFEDKTIGTGVLMNFNGVIGI 349

Query: 299 RITDRINFDQK 309
           RI +      +
Sbjct: 350 RILEFSTTIDE 360


>gi|253990918|ref|YP_003042274.1| hypothetical protein PAU_03444 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782368|emb|CAQ85532.1| Hypothetical protein PAU_03444 [Photorhabdus asymbiotica]
          Length = 71

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 32/66 (48%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + V +D  +     TL +++ L+ GQV   ++  ++  IL +  + I +  L +V + + 
Sbjct: 1   MRVKLDVVVANCSMTLDELIHLQKGQVKSLMNFVQSEVILKSGNQVIATGILVKVDEQFC 60

Query: 298 IRITDR 303
           + I   
Sbjct: 61  VAIDQV 66


>gi|166154014|ref|YP_001654132.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
 gi|166154889|ref|YP_001653144.1| type III secretion system protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335214|ref|ZP_07223458.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
 gi|165930002|emb|CAP03485.1| Type III secretion component, basal body [Chlamydia trachomatis
           434/Bu]
 gi|165930877|emb|CAP06439.1| Type III secretion component, basal body [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 373

 Score = 43.1 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           I   +     ++ + + L  G V+ F          +  NG ++    +  +     IR+
Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370

Query: 301 TDR 303
            + 
Sbjct: 371 LEV 373


>gi|320107031|ref|YP_004182621.1| surface presentation of antigens (SpoA) protein [Terriglobus
           saanensis SP1PR4]
 gi|319925552|gb|ADV82627.1| surface presentation of antigens (SpoA) protein [Terriglobus
           saanensis SP1PR4]
          Length = 79

 Score = 43.1 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V +   + L +  ++D++ L+ G V+     E     L     ++  CE   V  
Sbjct: 10  LSTLQVRMKVALPLPRFCVRDLLALQPGSVVGSGWNETEDVPLIGGETQVSWCEFETVED 69

Query: 295 NYTIRITDRI 304
              +R+T  I
Sbjct: 70  RIAVRLTRLI 79


>gi|332344758|gb|AEE58092.1| Type III secretion apparatus protein [Escherichia coli UMNK88]
          Length = 81

 Score = 43.1 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 23/70 (32%)

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  L V I+  +  K   L ++  L   ++I  L   +    +  NG      EL 
Sbjct: 1   MINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIRVNGALTGYGELV 60

Query: 291 RVGKNYTIRI 300
            V     + I
Sbjct: 61  EVDDKLGVEI 70


>gi|51102997|gb|AAT96144.1| HrcQa [Pseudomonas viridiflava]
          Length = 238

 Score = 43.1 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 12/90 (13%)

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
             ++      + + +   +    L  P  TLL+   ++   Q + +   +          
Sbjct: 114 APDDASFGCRVQVRLGGESLHAHLHSPSHTLLRLLHLAPW-QARYKPVDDTW-------- 164

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
               V     I     T  ++ +L+ G V+
Sbjct: 165 ---PVTTPLIIGELVLTPNELASLRPGDVV 191


>gi|288560236|ref|YP_003423722.1| adhesin-like protein [Methanobrevibacter ruminantium M1]
 gi|288542946|gb|ADC46830.1| adhesin-like protein [Methanobrevibacter ruminantium M1]
          Length = 2917

 Score = 43.1 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 69/271 (25%), Gaps = 31/271 (11%)

Query: 40   YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             LY            D  + I   +   G    I  + +++        +  S       
Sbjct: 2057 ELYDGTSAVGLIMVSDAILSIDIPAVDYGSPITIYATVEDS------EGNPLSGLVIATL 2110

Query: 100  SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
                    ++       E    + N   +      AK         ++  +         
Sbjct: 2111 DGVDCNIYVDA-----GEGSITIPNELFAGEYLVTAKLLGEN--NAMDTALLVVNPIEAE 2163

Query: 160  L-EDFYDIDYLKKNTNRLSNE-----FVTT----INMNMTIENVASSFVLIIPQETLLKT 209
            L     +I Y       LS+E      V      ++  + IE+     + ++P     K 
Sbjct: 2164 LIVSIDNITYNNPVEVELSSEYALDGIVILTIDGVDYAIEIED--GEAIALLPILLDSKD 2221

Query: 210  TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
              ++     ++ +  +                +   +     T  D   +K+  V    +
Sbjct: 2222 YEVTAKFIGENFDVEDATTSFTVEAIETA---LTLELENSTITYGDFAIVKVSLVDELGN 2278

Query: 270  REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
                   L+   +   +  L  V    T+ +
Sbjct: 2279 PMDGIVTLTVGDQ---TGSLAVVNGEGTVSV 2306


>gi|330969103|gb|EGH69169.1| type III secretion protein HrcQb [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 132

 Score = 43.1 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 26/70 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L +++  R    + TL ++  L  G ++         A L    + +   EL  V  
Sbjct: 60  LDSLELDLTLRCGELRLTLAELRRLDAGTILEVTGIAPGHATLCHGEQVVAEGELVDVEG 119

Query: 295 NYTIRITDRI 304
              ++IT  +
Sbjct: 120 RLGLQITRLV 129


>gi|304414642|ref|ZP_07395718.1| putative flagellar motor switch protein [Candidatus Regiella
           insecticola LSR1]
 gi|304283180|gb|EFL91588.1| putative flagellar motor switch protein [Candidatus Regiella
           insecticola LSR1]
          Length = 297

 Score = 42.7 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/206 (8%), Positives = 67/206 (32%), Gaps = 16/206 (7%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLY-NRSLSTVEKKLAKRTIAQISAVLNQCIS 151
            +       N ++ +L +  G S  ++ +   +  ++  E +L  +        L +   
Sbjct: 84  GHVAFDTERNFLLNILNDYYGLSKNSVTEPSIHVPITQTEARLKNKLG----LELTELFL 139

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
              +    L                  ++   +  ++   +    F +++      +   
Sbjct: 140 NHDDFGEKLAFKTT-------NGVFIKQWSYRLIFSLA-GDEQHVFYILLDANHADRILH 191

Query: 212 ISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
              ++  +  +    +   P  +   +L ++++ ++     TL ++  L+ G++I     
Sbjct: 192 SQDANDEENKKTTDNNSPLPLEKLFNKLPISLNIKLISVNLTLAELKALEKGEIISISMP 251

Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296
           +     +    ++I+S  +       
Sbjct: 252 DHFP--VFIGTEQIFSAIITENRGKL 275


>gi|171322881|ref|ZP_02911586.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171091755|gb|EDT37285.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 70

 Score = 42.7 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRI 300
           +   I+    ++ ++  L+ G V+      +     L A G+ I    L  VG +  +RI
Sbjct: 1   MHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVGAHLGVRI 60

Query: 301 TDRINFD 307
                 D
Sbjct: 61  DRMAGDD 67


>gi|76789412|ref|YP_328498.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
 gi|237803102|ref|YP_002888296.1| type III secretion system protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805023|ref|YP_002889177.1| type III secretion system protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255349061|ref|ZP_05381068.1| type III secretion system protein [Chlamydia trachomatis 70]
 gi|255503599|ref|ZP_05381989.1| type III secretion system protein [Chlamydia trachomatis 70s]
 gi|255507279|ref|ZP_05382918.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
 gi|76167942|gb|AAX50950.1| SctQ [Chlamydia trachomatis A/HAR-13]
 gi|231273323|emb|CAX10238.1| Type III secretion component, basal body [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274336|emb|CAX11131.1| Type III secretion component, basal body [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525716|emb|CBJ15197.1| Type III secretion component, basal body [Chlamydia trachomatis
           Sweden2]
 gi|296435286|gb|ADH17464.1| type III secretion system protein [Chlamydia trachomatis E/150]
 gi|296439004|gb|ADH21157.1| type III secretion system protein [Chlamydia trachomatis E/11023]
          Length = 373

 Score = 42.7 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           I   +     ++ + + L  G V+ F          +  NG ++    +  +     IR+
Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370

Query: 301 TDR 303
            + 
Sbjct: 371 LEV 373


>gi|222480967|ref|YP_002567204.1| CheC, inhibitor of MCP methylation [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453869|gb|ACM58134.1| CheC, inhibitor of MCP methylation [Halorubrum lacusprofundi ATCC
           49239]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 9/136 (6%), Positives = 28/136 (20%), Gaps = 15/136 (11%)

Query: 34  ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL--SSW 91
             + L     +       +    D+ +  T         +  +F        +       
Sbjct: 10  ACNRLAERGARQAAGALTDLTGTDLSVEVTGASVASGEDLAEAFAGRESIGVSVGLRGGL 69

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
                +      V  LL  L G              +++ +                  +
Sbjct: 70  EGEAVLAFDAENVDALLSLLPGG-------------ASMGRSAVTEVGNIALGGFLDGWA 116

Query: 152 TTQESSPNLEDFYDID 167
               ++ ++      +
Sbjct: 117 NYLGAAIDMTPPRYFE 132


>gi|296437141|gb|ADH19311.1| type III secretion system protein [Chlamydia trachomatis G/11222]
          Length = 373

 Score = 42.7 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           I   +     ++ + + L  G V+ F          +  NG ++    +  +     IR+
Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370

Query: 301 TDR 303
            + 
Sbjct: 371 LEV 373


>gi|15834668|ref|NP_296427.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270284833|ref|ZP_06194227.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270288862|ref|ZP_06195164.1| type III secretion system protein [Chlamydia muridarum Weiss]
 gi|301336213|ref|ZP_07224415.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
 gi|8163109|gb|AAF73521.1| type III secretion translocase SctQ [Chlamydia muridarum Nigg]
          Length = 373

 Score = 42.7 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           I   +     ++ + + L+ G ++ F          +  NG ++    +  +     IR+
Sbjct: 311 IVAEVARYTLSVGEFLKLEPGSILHFEGMHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370

Query: 301 TDR 303
            + 
Sbjct: 371 LEV 373



 Score = 37.3 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 59/218 (27%), Gaps = 21/218 (9%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW-SSNFFIGCSNNLVITLLENLLGASH 116
           V++S+ S      +  +  + E+ +      + + S  F+I  S   +  L+  +   S 
Sbjct: 53  VELSFESQGLLSAAPAVQEYGEHVLLQPFLANPFESGEFYIVSSEEDLQALIGTIFNDSS 112

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
                     L              +               P++      D         
Sbjct: 113 LASYFYEKDRLLGFHYYFVAEICKLLQE---------VSWIPSMAVKVTGDVAFSARALE 163

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
            +  V  +   +    V   F +++P  T        L  +N++ +  +           
Sbjct: 164 GDYHVVQVTCRLDSSYV--RFSVLVPDTTAQSV-YKFLEEKNQTFDIQKID--------M 212

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           Q  V +   +   + + +D   +  G  I         
Sbjct: 213 QTPVTLSVEVGFCQISEEDWHQVVPGSFILLDACLYDP 250


>gi|15605405|ref|NP_220191.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
 gi|255311498|ref|ZP_05354068.1| type III secretion system protein [Chlamydia trachomatis 6276]
 gi|255317800|ref|ZP_05359046.1| type III secretion system protein [Chlamydia trachomatis 6276s]
 gi|3329123|gb|AAC68267.1| Flagellar Motor Switch Domain/YscQ family [Chlamydia trachomatis
           D/UW-3/CX]
 gi|296436213|gb|ADH18387.1| type III secretion system protein [Chlamydia trachomatis G/9768]
 gi|296438073|gb|ADH20234.1| type III secretion system protein [Chlamydia trachomatis G/11074]
 gi|297140574|gb|ADH97332.1| type III secretion system protein [Chlamydia trachomatis G/9301]
 gi|297748803|gb|ADI51349.1| type III secreted protein SctQ [Chlamydia trachomatis D-EC]
 gi|297749683|gb|ADI52361.1| type III secreted protein SctQ [Chlamydia trachomatis D-LC]
          Length = 373

 Score = 42.7 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           I   +     ++ + + L  G V+ F          +  NG ++    +  +     IR+
Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370

Query: 301 TDR 303
            + 
Sbjct: 371 LEV 373


>gi|15618614|ref|NP_224900.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
 gi|15836236|ref|NP_300760.1| type III secretion system protein [Chlamydophila pneumoniae J138]
 gi|16752336|ref|NP_444594.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
 gi|33242062|ref|NP_877003.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
 gi|4377007|gb|AAD18843.1| Flagellar Motor Switch Domain/YscQ family [Chlamydophila pneumoniae
           CWL029]
 gi|6672034|dbj|BAA88654.1| flagellar motor switch domain/YscQ family [Chlamydophila
           pneumoniae]
 gi|8163350|gb|AAF73618.1| type III secretion translocase SctQ [Chlamydophila pneumoniae AR39]
 gi|8979076|dbj|BAA98911.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae
           J138]
 gi|33236572|gb|AAP98660.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183]
          Length = 371

 Score = 42.3 bits (98), Expect = 0.087,   Method: Composition-based stats.
 Identities = 7/62 (11%), Positives = 24/62 (38%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +      + + + L +G ++   +       +  +G ++   E+  +G    IR+ 
Sbjct: 310 LVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDVLGIRVL 369

Query: 302 DR 303
           + 
Sbjct: 370 EV 371


>gi|213650746|ref|ZP_03380799.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 51

 Score = 42.3 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +P         I   +G  + + + G V   Y +R+   IN 
Sbjct: 1   MPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 40


>gi|330872917|gb|EGH07066.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 133

 Score = 42.3 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               L +++  R    + TL ++  L  G ++         A L    + +   EL  V 
Sbjct: 60  ALDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVD 119

Query: 294 KNYTIRITD 302
               ++IT 
Sbjct: 120 GRLGLQITR 128


>gi|302185359|ref|ZP_07262032.1| type III secretion system apparatus protein YscQ/HrcQ [Pseudomonas
           syringae pv. syringae 642]
 gi|256259401|gb|ACU65038.1| HrcQ [Pseudomonas syringae pv. syringae]
          Length = 393

 Score = 42.3 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 24/68 (35%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             L + +  R      TL ++ TL  G V+     +   A L    + +   EL  V   
Sbjct: 322 NDLALPLTLRCGQINLTLGELATLVPGTVLEVPGIKPGLAGLYYGERRLAQGELVDVEGR 381

Query: 296 YTIRITDR 303
             ++I   
Sbjct: 382 LGLQILQV 389


>gi|152975176|ref|YP_001374693.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023928|gb|ABS21698.1| flagellar motor switch protein, putative [Bacillus cytotoxicus NVH
           391-98]
          Length = 74

 Score = 42.3 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 24/67 (35%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + + I   I   K  ++D++ +  G +       K    L    +EI + ++      
Sbjct: 5   DDIPLTIYFEIGKTKKKIEDLLHITKGTLYRLEDSTKNTVRLMLENEEIGTGKILTKNGK 64

Query: 296 YTIRITD 302
             + I +
Sbjct: 65  MYVEIVE 71


>gi|269302491|gb|ACZ32591.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 371

 Score = 42.3 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 7/62 (11%), Positives = 24/62 (38%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +      + + + L +G ++   +       +  +G ++   E+  +G    IR+ 
Sbjct: 310 LVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDVLGIRVL 369

Query: 302 DR 303
           + 
Sbjct: 370 EV 371


>gi|304321118|ref|YP_003854761.1| hypothetical protein PB2503_07819 [Parvularcula bermudensis
           HTCC2503]
 gi|303300020|gb|ADM09619.1| hypothetical protein PB2503_07819 [Parvularcula bermudensis
           HTCC2503]
          Length = 309

 Score = 42.3 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA----NGKEIYSCELGRVGKNYTI 298
           +  +   + ++  ++ LK G  +     +     ++     +   +   ELG + +  ++
Sbjct: 192 EALVAKPRLSITSILALKAGDKLQLPGAKLEAVTVAVPTAKSALSLAKGELGTIEQRRSL 251

Query: 299 RITDRINFDQ 308
           R+T+ ++  +
Sbjct: 252 RLTEILDPGE 261


>gi|327193026|gb|EGE59938.1| flagellar motor switch protein FliN [Rhizobium etli CNPAF512]
          Length = 56

 Score = 42.3 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDRINFDQ 308
           + L  G  I    +      +  NG+ I   E+  +      + +++ + ++  +
Sbjct: 1   MNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTKK 55


>gi|66044461|ref|YP_234302.1| type III secretion protein HrcQa [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255168|gb|AAY36264.1| type III secretion protein HrcQa [Pseudomonas syringae pv. syringae
           B728a]
          Length = 238

 Score = 42.3 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 12/90 (13%)

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
              E      +++ + +      L     TLL+    +   Q    +  +          
Sbjct: 114 APTEPAIGCRVHVRLGSERLDAHLHAAPATLLRLLGSADW-QVLKRDVDQSWS------- 165

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
               V     +     TL+ +  L+ G V+
Sbjct: 166 ----VATPLIVGELSLTLEQIAALRPGDVV 191


>gi|312171378|emb|CBX79637.1| Surface presentation of antigens protein spaO [Erwinia amylovora
           ATCC BAA-2158]
          Length = 308

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKN 295
           +L VNI+  ++    TL ++  ++ G  +P     +    +  N K     EL  +   +
Sbjct: 226 KLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEKKIKIYLNRKLFACGELVAMEDGS 285

Query: 296 YTIRITDRINF 306
           + + I      
Sbjct: 286 FAVEINQVTPG 296


>gi|292487270|ref|YP_003530142.1| surface presentation of antigens protein spaO [Erwinia amylovora
           CFBP1430]
 gi|292900358|ref|YP_003539727.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291200206|emb|CBJ47334.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552689|emb|CBA19734.1| Surface presentation of antigens protein spaO [Erwinia amylovora
           CFBP1430]
          Length = 308

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKN 295
           +L VNI+  ++    TL ++  ++ G  +P     +    +  N K     EL  +   +
Sbjct: 226 KLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEKKIKIYLNRKLFACGELVAMEDGS 285

Query: 296 YTIRITDRINF 306
           + + I      
Sbjct: 286 FAVEINQVTPG 296


>gi|330969102|gb|EGH69168.1| type III secretion protein HrcQa [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 238

 Score = 41.9 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 12/90 (13%)

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
              E      +++ + +      L     TLL+    +   Q    +  +          
Sbjct: 114 APTEPAIGCRVHVRLGSERLDAHLHAAPATLLRLLGSADW-QVLKRDVDQSWS------- 165

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
               V     +     TL+ +  L+ G V+
Sbjct: 166 ----VATPLIVGELSLTLEQIAALRPGDVV 191


>gi|229166617|ref|ZP_04294369.1| Flagellar motor switch protein [Bacillus cereus AH621]
 gi|228616871|gb|EEK73944.1| Flagellar motor switch protein [Bacillus cereus AH621]
          Length = 74

 Score = 41.9 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 25/67 (37%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + + I   I   K  ++D++ +  G +    +  K    L    +EI + ++      
Sbjct: 5   DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSAKNTVRLMLENEEIGTGKILTKNGK 64

Query: 296 YTIRITD 302
             + I +
Sbjct: 65  MYVEIVE 71


>gi|238796112|ref|ZP_04639623.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC
           43969]
 gi|238720057|gb|EEQ11862.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC
           43969]
          Length = 303

 Score = 41.9 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 6/48 (12%), Positives = 16/48 (33%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
              + V +   +      L+++  ++ G V      +     + AN  
Sbjct: 219 VAGVTVKLTFVLGHSDIPLQELAHIQPGAVYELGADKDREVKIYANSV 266


>gi|322368719|ref|ZP_08043286.1| taxis cluster protein CheC [Haladaptatus paucihalophilus DX253]
 gi|320551450|gb|EFW93097.1| taxis cluster protein CheC [Haladaptatus paucihalophilus DX253]
          Length = 389

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 57/222 (25%), Gaps = 14/222 (6%)

Query: 20  RLTGKLGDKKTIEKISS--SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
            L G  G+  ++E +S    +       + +       ++  +  T         +  + 
Sbjct: 172 ELLGDDGETVSVEDLSHFDEMTRGGATTVAENITAMTGIETTVEITHVSFVPVEEVPEAL 231

Query: 78  KENFVF-SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
            +         L +    F +        T   ++ GA         +  LS  E+   +
Sbjct: 232 GDTTYVGVVIELETSPGGFVLIL---FDETSARDISGALLPGDDGFSDGELSETEQNAIQ 288

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDF-------YDIDYLKKNTNRLSNEFVTTINMNMT 189
                +++      +   E++ ++            I            EF    +  + 
Sbjct: 289 ELGNIMASSFIDGWANALETTIDISPPTFAHDMGSAIADPLVAQLGQKQEFAFVSDATIR 348

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231
                    L +  +       +  S    + ++ +      
Sbjct: 349 AAKTPFDCSLYVLPDESE-LREVLSSLDADATSERKTNAGRL 389


>gi|229160724|ref|ZP_04288716.1| Flagellar motor switch protein [Bacillus cereus R309803]
 gi|228622739|gb|EEK79573.1| Flagellar motor switch protein [Bacillus cereus R309803]
          Length = 74

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 25/67 (37%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + + I   I   K  ++D++ +  G +    +  K    +    +EI + ++      
Sbjct: 5   DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRIMLENEEIGTGKILTKNGK 64

Query: 296 YTIRITD 302
             + I +
Sbjct: 65  MYVEIVE 71


>gi|289677998|ref|ZP_06498888.1| type III secretion protein hrcQb [Pseudomonas syringae pv. syringae
           FF5]
 gi|330975865|gb|EGH75931.1| type III secretion protein HrcQb [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 133

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L + +  R    + TL ++  L  G ++         A L    + +   EL  V  
Sbjct: 61  LDSLELALTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120

Query: 295 NYTIRITDRI 304
              ++IT  +
Sbjct: 121 RLGLQITRLV 130


>gi|330963054|gb|EGH63314.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 133

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L +++  R    + TL ++  L  G ++         A L    + +   EL  V  
Sbjct: 61  LDSLALDLTLRCGELRLTLAELRGLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVDG 120

Query: 295 NYTIRITD 302
              ++IT 
Sbjct: 121 RLGLQITR 128


>gi|213968263|ref|ZP_03396407.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato
           T1]
 gi|301381808|ref|ZP_07230226.1| type III secretion protein hrcQb [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061999|ref|ZP_07253540.1| type III secretion protein hrcQb [Pseudomonas syringae pv. tomato
           K40]
 gi|302135081|ref|ZP_07261071.1| type III secretion protein hrcQb [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926901|gb|EEB60452.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato
           T1]
          Length = 137

 Score = 41.5 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L +++  R    + TL ++  L  G ++         A L    + +   EL  V  
Sbjct: 65  LDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVDG 124

Query: 295 NYTIRITD 302
              ++IT 
Sbjct: 125 RLGLQITR 132


>gi|257487233|ref|ZP_05641274.1| type III secretion component protein HrcQb [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|238577788|gb|ACR46699.1| HrcQb [Pseudomonas syringae pv. tabaci]
 gi|331009153|gb|EGH89209.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 129

 Score = 41.5 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%)

Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +    +        +      L +++  R    + TL ++  L  G ++         A 
Sbjct: 39  TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGIAPGHAT 98

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           L    + +   EL  V     ++IT  +  
Sbjct: 99  LCHGEQVVAEGELVDVEGRLGLQITRLVTR 128


>gi|187778448|ref|ZP_02994921.1| hypothetical protein CLOSPO_02042 [Clostridium sporogenes ATCC
           15579]
 gi|187772073|gb|EDU35875.1| hypothetical protein CLOSPO_02042 [Clostridium sporogenes ATCC
           15579]
          Length = 864

 Score = 41.5 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 13/81 (16%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI--- 298
           +   I+  +  + D+V LK G ++P   R      L  N       E    G+NY +   
Sbjct: 124 LSKNISSTELVVGDIVRLKPGDIVPADIRIIETERLRVN-------EAVITGENYAVEKY 176

Query: 299 --RITDRINFDQKSLKNFLHK 317
             ++ D+     +  +N L K
Sbjct: 177 STKVEDKEITTSEM-RNILFK 196


>gi|30019807|ref|NP_831438.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
 gi|47565431|ref|ZP_00236472.1| flagellar motor switch protein fliN VC2125, putative [Bacillus
           cereus G9241]
 gi|49477320|ref|YP_035881.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143696|ref|YP_083132.1| flagellar motor switch protein [Bacillus cereus E33L]
 gi|75763359|ref|ZP_00743097.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118477196|ref|YP_894347.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|163939572|ref|YP_001644456.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
 gi|196033551|ref|ZP_03100963.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           W]
 gi|196038931|ref|ZP_03106238.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           NVH0597-99]
 gi|196045029|ref|ZP_03112262.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           03BB108]
 gi|206970641|ref|ZP_03231593.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           AH1134]
 gi|206974901|ref|ZP_03235816.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           H3081.97]
 gi|217959245|ref|YP_002337793.1| flagellar motor switch protein [Bacillus cereus AH187]
 gi|218235179|ref|YP_002366447.1| flagellar motor switch protein [Bacillus cereus B4264]
 gi|218896696|ref|YP_002445107.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           G9842]
 gi|218902876|ref|YP_002450710.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           AH820]
 gi|222095385|ref|YP_002529445.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|225863620|ref|YP_002748998.1| hypothetical protein BCA_1722 [Bacillus cereus 03BB102]
 gi|228900344|ref|ZP_04064573.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
 gi|228907395|ref|ZP_04071253.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
 gi|228914340|ref|ZP_04077955.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228920472|ref|ZP_04083817.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228926798|ref|ZP_04089866.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933046|ref|ZP_04095909.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228938875|ref|ZP_04101475.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228945365|ref|ZP_04107720.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228952145|ref|ZP_04114237.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228958043|ref|ZP_04119778.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228964746|ref|ZP_04125853.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971756|ref|ZP_04132377.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978365|ref|ZP_04138742.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
 gi|228984847|ref|ZP_04145017.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229017048|ref|ZP_04173967.1| Flagellar motor switch protein [Bacillus cereus AH1273]
 gi|229023229|ref|ZP_04179739.1| Flagellar motor switch protein [Bacillus cereus AH1272]
 gi|229029442|ref|ZP_04185525.1| Flagellar motor switch protein [Bacillus cereus AH1271]
 gi|229043518|ref|ZP_04191227.1| Flagellar motor switch protein [Bacillus cereus AH676]
 gi|229058411|ref|ZP_04196795.1| Flagellar motor switch protein [Bacillus cereus AH603]
 gi|229069313|ref|ZP_04202603.1| Flagellar motor switch protein [Bacillus cereus F65185]
 gi|229078944|ref|ZP_04211496.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
 gi|229090725|ref|ZP_04221958.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
 gi|229096247|ref|ZP_04227220.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
 gi|229102361|ref|ZP_04233069.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
 gi|229109218|ref|ZP_04238817.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
 gi|229115202|ref|ZP_04244612.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
 gi|229121314|ref|ZP_04250545.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
 gi|229127089|ref|ZP_04256086.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
 gi|229132590|ref|ZP_04261438.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
 gi|229138462|ref|ZP_04267051.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
 gi|229144375|ref|ZP_04272780.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
 gi|229149967|ref|ZP_04278193.1| Flagellar motor switch protein [Bacillus cereus m1550]
 gi|229155333|ref|ZP_04283443.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
 gi|229172408|ref|ZP_04299967.1| Flagellar motor switch protein [Bacillus cereus MM3]
 gi|229178170|ref|ZP_04305541.1| Flagellar motor switch protein [Bacillus cereus 172560W]
 gi|229183954|ref|ZP_04311169.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
 gi|296502363|ref|YP_003664063.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|300117314|ref|ZP_07055104.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|301053300|ref|YP_003791511.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|29895352|gb|AAP08639.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
 gi|47557421|gb|EAL15748.1| flagellar motor switch protein fliN VC2125, putative [Bacillus
           cereus G9241]
 gi|49328876|gb|AAT59522.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51977165|gb|AAU18715.1| flagellar motor switch protein N [Bacillus cereus E33L]
 gi|74489150|gb|EAO52628.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118416421|gb|ABK84840.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|163861769|gb|ABY42828.1| flagellar motor switch protein, putative [Bacillus
           weihenstephanensis KBAB4]
 gi|195993985|gb|EDX57941.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           W]
 gi|196024031|gb|EDX62705.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           03BB108]
 gi|196030076|gb|EDX68676.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           NVH0597-99]
 gi|206734277|gb|EDZ51447.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           AH1134]
 gi|206746920|gb|EDZ58312.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           H3081.97]
 gi|217063362|gb|ACJ77612.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           AH187]
 gi|218163136|gb|ACK63128.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           B4264]
 gi|218539681|gb|ACK92079.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           AH820]
 gi|218542965|gb|ACK95359.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           G9842]
 gi|221239443|gb|ACM12153.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|225788270|gb|ACO28487.1| conserved domain protein [Bacillus cereus 03BB102]
 gi|228599479|gb|EEK57084.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
 gi|228605300|gb|EEK62750.1| Flagellar motor switch protein [Bacillus cereus 172560W]
 gi|228610879|gb|EEK68142.1| Flagellar motor switch protein [Bacillus cereus MM3]
 gi|228628048|gb|EEK84765.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
 gi|228633489|gb|EEK90092.1| Flagellar motor switch protein [Bacillus cereus m1550]
 gi|228639006|gb|EEK95431.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
 gi|228644999|gb|EEL01242.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
 gi|228650822|gb|EEL06809.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
 gi|228656205|gb|EEL12046.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
 gi|228662159|gb|EEL17768.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
 gi|228668342|gb|EEL23774.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
 gi|228674228|gb|EEL29473.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
 gi|228681008|gb|EEL35177.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
 gi|228687207|gb|EEL41112.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
 gi|228692667|gb|EEL46393.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
 gi|228704358|gb|EEL56792.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
 gi|228713800|gb|EEL65685.1| Flagellar motor switch protein [Bacillus cereus F65185]
 gi|228719920|gb|EEL71510.1| Flagellar motor switch protein [Bacillus cereus AH603]
 gi|228725740|gb|EEL76988.1| Flagellar motor switch protein [Bacillus cereus AH676]
 gi|228731901|gb|EEL82800.1| Flagellar motor switch protein [Bacillus cereus AH1271]
 gi|228738023|gb|EEL88509.1| Flagellar motor switch protein [Bacillus cereus AH1272]
 gi|228744221|gb|EEL94304.1| Flagellar motor switch protein [Bacillus cereus AH1273]
 gi|228774797|gb|EEM23193.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228781382|gb|EEM29583.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
 gi|228787846|gb|EEM35804.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794996|gb|EEM42495.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228801560|gb|EEM48442.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807499|gb|EEM54026.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228814337|gb|EEM60603.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228820724|gb|EEM66749.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228826647|gb|EEM72418.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832911|gb|EEM78480.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228839102|gb|EEM84398.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228845334|gb|EEM90370.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228852256|gb|EEM97052.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
 gi|228859231|gb|EEN03662.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
 gi|296323415|gb|ADH06343.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|298725149|gb|EFI65801.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|300375469|gb|ADK04373.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
 gi|324325780|gb|ADY21040.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|326939375|gb|AEA15271.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 74

 Score = 41.5 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 25/67 (37%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + + I   I   K  ++D++ +  G +    +  K    L    +EI + ++      
Sbjct: 5   DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 64

Query: 296 YTIRITD 302
             + I +
Sbjct: 65  MYVEIVE 71


>gi|330901780|gb|EGH33199.1| type III secretion protein HrcQb [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330903314|gb|EGH33886.1| type III secretion protein HrcQb [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 133

 Score = 41.5 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L + +  R    + TL ++  L  G ++         A L    + +   EL  V  
Sbjct: 61  LDSLELALTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120

Query: 295 NYTIRITDRI 304
              ++IT  +
Sbjct: 121 RLGLQITRLV 130


>gi|330937034|gb|EGH41122.1| type III secretion protein HrcQb [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 133

 Score = 41.5 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L + +  R    + TL ++  L  G ++         A L    + +   EL  V  
Sbjct: 61  LDSLELALTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120

Query: 295 NYTIRITDRI 304
              ++IT  +
Sbjct: 121 RLGLQITRLV 130


>gi|302387771|ref|YP_003823593.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1]
 gi|302198399|gb|ADL05970.1| CheC, inhibitor of MCP methylation [Clostridium saccharolyticum
           WM1]
          Length = 208

 Score = 41.5 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/180 (7%), Positives = 42/180 (23%), Gaps = 16/180 (8%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN----FVFSQASL 88
            +   +G +            +   V ++    +   ++  I    +             
Sbjct: 15  DLIREIGSIGTGNAATALSSLLGKTVRMTLPDVKILGYNEAIKYLGDPEEIVAAILVKMT 74

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              +         + +  +L      S           L+ +E    +     I +    
Sbjct: 75  GEINGLMLFILKLDFINEVL-----TSVMQQNIEDYYQLNVLETSALEEIGNIIISSYVN 129

Query: 149 CISTTQESSPNLEDFYDIDY-------LKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
            +S+  + + NL               +         + +  I+    I        L++
Sbjct: 130 AMSSLSDVTINLSVPDIAVNMLGGILSVPMVEFGYQTDKMMMISGQFVIGGKVLHSDLLM 189


>gi|28868604|ref|NP_791223.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|62286949|sp|Q9F0H3|HRCQB_PSESM RecName: Full=Type III secretion protein HrcQb
 gi|11276515|gb|AAG33883.1| HrcQb [Pseudomonas syringae pv. tomato]
 gi|28851842|gb|AAO54918.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331015102|gb|EGH95158.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 137

 Score = 41.5 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L +++  R    + TL ++  L  G ++         A L    + +   EL  V  
Sbjct: 65  LDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVDG 124

Query: 295 NYTIRITD 302
              ++IT 
Sbjct: 125 RLGLQITR 132


>gi|254575131|gb|ACT68032.1| type III secretion protein [Pantoea stewartii subsp. stewartii
           DC283]
          Length = 305

 Score = 41.5 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKNYT 297
            V+I+  ++  + TL ++  ++ G  +P     +    +  N K     EL  +      
Sbjct: 226 PVDIEFVLDGGRVTLVELEDIRPGAALPLPQDAEKNMKIYLNKKLFARGELVALENGALA 285

Query: 298 IRITDR 303
           + +   
Sbjct: 286 VEMNHV 291


>gi|42780855|ref|NP_978102.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
 gi|229195974|ref|ZP_04322727.1| Flagellar motor switch protein [Bacillus cereus m1293]
 gi|42736775|gb|AAS40710.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
           10987]
 gi|228587533|gb|EEK45598.1| Flagellar motor switch protein [Bacillus cereus m1293]
          Length = 79

 Score = 41.5 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 25/67 (37%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + + I   I   K  ++D++ +  G +    +  K    L    +EI + ++      
Sbjct: 10  DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 69

Query: 296 YTIRITD 302
             + I +
Sbjct: 70  MYVEIVE 76


>gi|331664427|ref|ZP_08365333.1| typeIII secretion apparatus protein [Escherichia coli TA143]
 gi|331058358|gb|EGI30339.1| typeIII secretion apparatus protein [Escherichia coli TA143]
          Length = 113

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             L V I+  +  K   L ++  L   ++I  L   +    +  NG      EL  V   
Sbjct: 38  EDLPVKIEFVLEKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 97

Query: 296 YTIRITDRINFDQKS 310
             + I   ++ +   
Sbjct: 98  LGVEIHSWLSGNNNV 112


>gi|229189860|ref|ZP_04316870.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
 gi|228593534|gb|EEK51343.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
          Length = 81

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 25/67 (37%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + + I   I   K  ++D++ +  G +    +  K    L    +EI + ++      
Sbjct: 12  DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 71

Query: 296 YTIRITD 302
             + I +
Sbjct: 72  MYVEIVE 78


>gi|320329923|gb|EFW85911.1| type III secretion protein hrcQb [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330874623|gb|EGH08772.1| type III secretion protein HrcQb [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 128

 Score = 41.2 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +    +        +      L +++  R    + TL ++  L  G ++     +   A 
Sbjct: 38  TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGIQPGHAT 97

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           L    + +   EL  V     ++IT  +  
Sbjct: 98  LCHGEQVVAEGELVDVEGRLGLQITRLVTR 127


>gi|297621833|ref|YP_003709970.1| putative type III secretion translocase SctQ [Waddlia chondrophila
           WSU 86-1044]
 gi|297377134|gb|ADI38964.1| putative type III secretion translocase SctQ [Waddlia chondrophila
           WSU 86-1044]
          Length = 281

 Score = 41.2 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 68/250 (27%), Gaps = 33/250 (13%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSH--IIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103
           L +  K  ++    +     +                    + S++S   N +I      
Sbjct: 38  LAENLKNLLEFQ-SLEIVPSEFVWAEEGAATKGMGSPLSIVKFSIASLEGNVYIAIPQEE 96

Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163
           +  +++ LL    E  P   +      +         ++   + Q I       P LE  
Sbjct: 97  IRKIMDLLLLKGSEPAPIDDD-----FQIAFLDFLTLEVMHAVRQ-IDYPPNLLPRLEKN 150

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
            ++           N  +  +N+ +T ++   S     P+  + +    SL        +
Sbjct: 151 AEM----------PNTPMLVMNLTVTADSFVFS-----PRIMISEEMNRSLKEHYVKSKE 195

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH------REKTCAIL 277
           +     P + +    +V +         +      +K G  I                 L
Sbjct: 196 NAVFKRPLSDQC---DVIVHLEAGKTTLSQAQWKEVKPGDFILLDRCSLKPGENSGTVTL 252

Query: 278 SANGKEIYSC 287
           +  G  I   
Sbjct: 253 TLKGHPILRG 262


>gi|330984965|gb|EGH83068.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 129

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%)

Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +    +        +      L +++  R    + TL ++  L  G ++         A 
Sbjct: 39  TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHAT 98

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           L    + +   EL  V     ++IT  +  
Sbjct: 99  LCHGEQVVAEGELVDVEGRLGLQITRLVKR 128


>gi|71734621|ref|YP_273545.1| type III secretion component protein HrcQb [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|62510672|sp|O85094|HRCQB_PSESH RecName: Full=Type III secretion protein HrcQb
 gi|3282780|gb|AAC25068.1| HrcQ2 [Pseudomonas syringae pv. phaseolicola]
 gi|42562001|gb|AAS20443.1| HrcQb [Pseudomonas syringae pv. phaseolicola]
 gi|71555174|gb|AAZ34385.1| type III secretion component protein HrcQb [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320322954|gb|EFW79044.1| type III secretion protein hrcQb [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 128

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%)

Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +    +        +      L +++  R    + TL ++  L  G ++         A 
Sbjct: 38  TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHAT 97

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           L    + +   EL  V     ++IT  +  
Sbjct: 98  LCHGEQVVAEGELVDVEGRLGLQITRLVTR 127


>gi|237800002|ref|ZP_04588463.1| type III secretion protein HrcQb [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022857|gb|EGI02914.1| type III secretion protein HrcQb [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 136

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 1/96 (1%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
            +       +Q   ++   D  D  +     L +++  R    + +L ++  L  G ++ 
Sbjct: 37  EQPEYAPAEAQESEQDHDHDRHDA-SSDFDSLALDLTLRCGELRLSLAELRRLDAGTILE 95

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                   A L    + +   EL  V     ++IT 
Sbjct: 96  VSGIAPGYATLCHADRVVAEGELVDVDGRLGLQITR 131


>gi|269138230|ref|YP_003294930.1| translocation protein in type III secretion [Edwardsiella tarda
           EIB202]
 gi|267983890|gb|ACY83719.1| translocation protein in type III secretion [Edwardsiella tarda
           EIB202]
 gi|304558273|gb|ADM40937.1| EsaQ [Edwardsiella tarda FL6-60]
          Length = 304

 Score = 40.8 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 20/67 (29%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +         + + +     G   P          LS  G       L R+   + +
Sbjct: 230 EICLLAEAGRVSLSAQSLGEWAPGLETPLNAYAYPRLQLSLRGAPWAEGTLLRLDDGWAV 289

Query: 299 RITDRIN 305
           RIT RI 
Sbjct: 290 RITRRIP 296


>gi|62199643|gb|AAV69420.1| EsaQ [Edwardsiella tarda]
          Length = 304

 Score = 40.8 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 20/67 (29%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +         + + +     G   P          LS  G       L R+   + +
Sbjct: 230 EICLLAEAGRVSLSAQSLGEWAPGLETPLNAYAYPRLQLSLRGAPWAEGTLLRLDDGWAV 289

Query: 299 RITDRIN 305
           RIT RI 
Sbjct: 290 RITRRIP 296


>gi|289623682|ref|ZP_06456636.1| type III secretion protein hrcQb [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647644|ref|ZP_06478987.1| type III secretion protein hrcQb [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298485950|ref|ZP_07004025.1| type III secretion system protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159536|gb|EFI00582.1| type III secretion system protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330871286|gb|EGH05995.1| type III secretion protein HrcQb [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 129

 Score = 40.8 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%)

Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +    +        +      L +++  R    + TL ++  L  G ++         A 
Sbjct: 39  TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHAT 98

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           L    + +   EL  V     ++IT  +  
Sbjct: 99  LCHGEQVVAEGELVDVEGRLGLQITRLVTR 128


>gi|330957490|gb|EGH57750.1| type III secretion protein HrcQa [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 238

 Score = 40.8 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 12/90 (13%)

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
              E +    + + ++    +  L    +TLL+    +   Q       E          
Sbjct: 114 APTEPLIGCRIQVRLDAARINARLHTTPDTLLRLLGSASW-QALKRTVDESWS------- 165

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
               V     I     TL+ + +L+ G V+
Sbjct: 166 ----VPTPLIIGEMSLTLEQIASLRPGDVV 191


>gi|61743021|gb|AAX55241.1| EsaQ [Edwardsiella tarda]
          Length = 221

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 20/67 (29%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +         + + +     G   P          LS  G       L R+   + +
Sbjct: 147 EICLLAEAGRVSLSAQSLGEWAPGLETPLNAYAYPRLQLSLRGAPWAEGTLLRLDDGWAV 206

Query: 299 RITDRIN 305
           RIT RI 
Sbjct: 207 RITRRIP 213


>gi|188534811|ref|YP_001908608.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
 gi|188029853|emb|CAO97734.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           T+    + +  +  + E    D           L V+I+  ++    TL ++  +  G  
Sbjct: 202 TVENQLINNRETYREEEEVLLDWTK--------LPVDIEFVLDKYTVTLAELEEITPGVA 253

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRV-GKNYTIRITDRINFDQK 309
           +P     +    +  N K     EL  +   ++ + I         
Sbjct: 254 LPLKPAAEKKIKIYLNRKLFACGELVALEDGSFAVEINQVTPGSVD 299


>gi|45504754|gb|AAS66845.1| YsaQ [Sodalis glossinidius]
          Length = 285

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 20/58 (34%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
            ++ V ++  +      L ++  L+ G V       +    +  N + +     G  G
Sbjct: 227 SRVPVTVEFVLEANSYPLAELDNLQPGTVFDLSENVEKNIKIFLNQQLVGHGRTGDAG 284



 Score = 39.2 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 10/90 (11%)

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           L +P E L+                +   +             +   +   +    D+V 
Sbjct: 116 LALPGEDLIVHVADWPKQAFPQAQTASAWLKRL-------PFELRCVLGCSRLAALDLVR 168

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCE 288
           L  G ++           L+ NG+ I+SC 
Sbjct: 169 LDTGDLLLITRP---ELHLAVNGRAIFSCH 195


>gi|229011055|ref|ZP_04168249.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
 gi|228750227|gb|EEM00059.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
          Length = 74

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + + I   I   K  ++D++ +  G +    +  +   ++    +EI + ++      
Sbjct: 5   DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTENTVLIMLENEEIGTGKILTKNGK 64

Query: 296 YTIRITD 302
             + I +
Sbjct: 65  MYVEIVE 71


>gi|238752374|ref|ZP_04613852.1| Type III secretion system apparatus protein [Yersinia rohdei ATCC
           43380]
 gi|238709415|gb|EEQ01655.1| Type III secretion system apparatus protein [Yersinia rohdei ATCC
           43380]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 44/160 (27%), Gaps = 10/160 (6%)

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINM-NMTIENVASSFVLIIP--QETLLKTTLI 212
              +L   +    L +       + +       +   N    + +  P     L     +
Sbjct: 164 WQASLVVGWSRLSLHQLQQITPGDGLRISRAAELEQGN-CWLWQMAAPQMYIKLEDGNKM 222

Query: 213 SLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           ++   N   +Q  +L      K         L   +   I      + ++  L +GQ + 
Sbjct: 223 TIQQVNDDIDQLLELDIALVEKNPQKVMLDNLPQTLVMEIGRLSLPMGELTQLAVGQTLA 282

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                     +  +G+ + S  L        +RI   +  
Sbjct: 283 CQTHLYGEVNIRLHGQSVGSGSLLSCEGELLVRIDQWLTP 322


>gi|326430843|gb|EGD76413.1| hypothetical protein PTSG_07532 [Salpingoeca sp. ATCC 50818]
          Length = 795

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
                  +     +      LK+++ L    VI    R++   ++    + ++    
Sbjct: 358 THVSSSALASCAHLGSAAADLKELMELSP-DVIVLDDRKQDPLVVKCPQRTVFLARY 413


>gi|167905067|ref|ZP_02492272.1| hypothetical protein BpseN_22674 [Burkholderia pseudomallei NCTC
           13177]
          Length = 83

 Score = 40.4 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL + +  ++        DV+ L+ G V+P        A +  +  ++++  +       
Sbjct: 17  QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTASIAEHNGKL 74

Query: 297 TI 298
            +
Sbjct: 75  CL 76


>gi|40889181|pdb|1O9Y|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Hrcqb
           Protein From Pseudomonas Syringae Pv. Phaseolicola
 gi|40889182|pdb|1O9Y|B Chain B, Crystal Structure Of The C-Terminal Domain Of The Hrcqb
           Protein From Pseudomonas Syringae Pv. Phaseolicola
 gi|40889183|pdb|1O9Y|C Chain C, Crystal Structure Of The C-Terminal Domain Of The Hrcqb
           Protein From Pseudomonas Syringae Pv. Phaseolicola
 gi|40889184|pdb|1O9Y|D Chain D, Crystal Structure Of The C-Terminal Domain Of The Hrcqb
           Protein From Pseudomonas Syringae Pv. Phaseolicola
          Length = 84

 Score = 40.4 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 26/73 (35%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               L +++  R    + TL ++  L  G ++         A L    + +   EL  V 
Sbjct: 11  ALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVE 70

Query: 294 KNYTIRITDRINF 306
               ++IT  +  
Sbjct: 71  GRLGLQITRLVTR 83


>gi|168026410|ref|XP_001765725.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683151|gb|EDQ69564.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 4165

 Score = 40.4 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 4/121 (3%)

Query: 131  EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
            E  + +  +  I                + E       ++      + E + T  ++   
Sbjct: 2076 EPAVIRTFVGGIRKEETSAAGVGAGLLLDEESPSTETNIETAEQEPAEEIIETTALDRDD 2135

Query: 191  ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
             +        +P    L   +      N       D +            +I+ R+ L K
Sbjct: 2136 FDQ----HECMPVILRLAEHVHVKFGANYQPGVMPDWMKSLHATLDNAATHINVRLFLAK 2191

Query: 251  T 251
             
Sbjct: 2192 V 2192


>gi|238897369|ref|YP_002923046.1| type III secretion system protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465124|gb|ACQ66898.1| type III secretion system protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 320

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNV-----NIDTRINLKKTTLKDVVTLKIGQVIP 266
            + S ++  +  S D+I  F  +  ++++      +   I      ++D+  L +G+ + 
Sbjct: 220 KAPSDEDAPDASSPDVIPEFEEEPKKISLNEFTQTLVMEIGRINIPIQDLNQLFVGKTLN 279

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                    ++  NG++I S  L        +RI  
Sbjct: 280 CKTSFYGEVMIRLNGRKIGSGNLLNCDGELIVRIEQ 315


>gi|126698113|ref|YP_001087010.1| chemotaxis protein CheC [Clostridium difficile 630]
 gi|115249550|emb|CAJ67367.1| Chemotaxis protein CheY-P phosphatase CheC [Clostridium difficile]
          Length = 205

 Score = 40.0 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/206 (7%), Positives = 54/206 (26%), Gaps = 18/206 (8%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
           +   L            +G +            ++ +V++     +  +++   +     
Sbjct: 1   MINYLELDDVHIDALREIGNIGSGNAITALASMINSNVEVLIPMVKILEYNEATNLLGGP 60

Query: 81  FVFSQASLSSWSSNF----FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
                  L     +           ++   +L +L       + ++       +E    K
Sbjct: 61  ENKVVCILLDMKGDINGMFMFLLDESITQLMLSSLFNKEEAFLDEIE-----AIEISAIK 115

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFY-------DIDYLKKNTNRLSNEFVTTIN--MN 187
                +++     I++    + ++            +  +         + V  I     
Sbjct: 116 EIGNIMASSYVNAIASMLNMTISVSIPDICIDMVGAVLNVPMIRFSDVGDKVLFIENKFK 175

Query: 188 MTIENVASSFVLIIPQETLLKTTLIS 213
           M+     S  ++I    +L K  +  
Sbjct: 176 MSDNYFTSHILMIPEMSSLKKILVRL 201


>gi|213968262|ref|ZP_03396406.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato
           T1]
 gi|301381809|ref|ZP_07230227.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062000|ref|ZP_07253541.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato
           K40]
 gi|302135082|ref|ZP_07261072.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926900|gb|EEB60451.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato
           T1]
          Length = 238

 Score = 40.0 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%)

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
            E      + + + +      L    ETLL     +   Q + +   E            
Sbjct: 116 AELTVGCRIQVRLADQQVHAHLHATPETLLTLLRSAPW-QARLKPLDERWS--------- 165

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             +     +     TL+ + +L+ G V+
Sbjct: 166 --ITTPLILGELSLTLEQLASLRPGDVL 191


>gi|188586046|ref|YP_001917591.1| CheC, inhibitor of MCP methylation [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350733|gb|ACB85003.1| CheC, inhibitor of MCP methylation [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 212

 Score = 40.0 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 50/203 (24%), Gaps = 14/203 (6%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ---ASL 88
             I   LG +          + +   + ++        F  +                 +
Sbjct: 11  IDILKELGNIGAGNATTALSQFLGKSIKMTVPEVNILPFEEVPEVVGGPEELVAGVYMRI 70

Query: 89  SSWS-SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
              +  +  +       + L++ LLG    +  ++    L  +E+     T   ++    
Sbjct: 71  EGEAPGSLMLLLKQEDALKLIDVLLG-RDSSQEKVGTADLDDIEQSALMETGNIVANSYL 129

Query: 148 QCIST--TQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFV- 198
             ++     E  P++               L       +E V  I      E        
Sbjct: 130 NSLADMTKMEVGPSVPAISVDMAGAILEVILFQVDEEISEHVILIGTEFAYEGNTIRGHF 189

Query: 199 LIIPQETLLKTTLISLSSQNKSE 221
            +IP        + SL       
Sbjct: 190 FLIPDNESFPKIIKSLGFDYDDS 212


>gi|146296305|ref|YP_001180076.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409881|gb|ABP66885.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 205

 Score = 39.6 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 34/150 (22%), Gaps = 9/150 (6%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI---IHSFKENFVFSQASLS 89
            +   LG +            +   +D+     +      +   +   +   V    ++ 
Sbjct: 14  DVLRELGNIGTGNAISALAMMIGRRIDMKVPVVKMVDLKEVPEILGGAEIPVVGILLNVE 73

Query: 90  S-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  S      L+  LLG S            + +EK         ++     
Sbjct: 74  GDIDGFIMLVMSQASAHILVNMLLGTSLNGYS-----EFTDIEKSALTEIGNILAGAYLT 128

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            +++              + +         
Sbjct: 129 ALASLTGFKMIQSVPQLAEDMAGAILSFPA 158


>gi|330872916|gb|EGH07065.1| type III secretion protein HrcQa [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 238

 Score = 39.6 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%)

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
            E      + + + +      L    ETLL     +   Q + +   E            
Sbjct: 116 AELTVGCRIQVRLADQQIHAHLHATPETLLTLLRSAPW-QARLKPLDERWS--------- 165

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             +     +     TL+ + +L+ G V+
Sbjct: 166 --ITTPLILGELSLTLEQLASLRPGDVL 191


>gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 125

 Score = 39.6 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%)

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +  K  TL ++  +   Q++      +    + ANG  + + EL ++     + I + +
Sbjct: 1   VLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDTLGVEIHEWL 60

Query: 305 NF 306
           + 
Sbjct: 61  SE 62


>gi|312972917|ref|ZP_07787090.1| surface presentation of antigens spaO domain protein [Escherichia
           coli 1827-70]
 gi|310332859|gb|EFQ00073.1| surface presentation of antigens spaO domain protein [Escherichia
           coli 1827-70]
          Length = 81

 Score = 39.6 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 22/70 (31%)

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  L V I+  +  K   L ++  L   ++   L   +    +  NG      EL 
Sbjct: 1   MINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRITSLLSESEKNIEIRVNGALTGYGELV 60

Query: 291 RVGKNYTIRI 300
            V     + I
Sbjct: 61  EVDDKLGVEI 70


>gi|1483321|emb|CAA68097.1| HrcQb protein [Pantoea agglomerans]
          Length = 108

 Score = 39.6 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              L ++++ R    + TL ++  L++G+++   +     A L      I   EL  V
Sbjct: 31  IALLPLSLEVRCGRTRLTLGELQQLQLGRILTLDNMTPGEAGLYHGDTLIARGELVDV 88


>gi|153005188|ref|YP_001379513.1| cell surface receptor IPT/TIG domain-containing protein
            [Anaeromyxobacter sp. Fw109-5]
 gi|152028761|gb|ABS26529.1| cell surface receptor IPT/TIG domain protein [Anaeromyxobacter sp.
            Fw109-5]
          Length = 12684

 Score = 39.6 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 75/259 (28%), Gaps = 26/259 (10%)

Query: 57   DVDISYTSCQSGKFSHIIHSFKENF--VFSQASLSSWSSNFFIGCSNNLVITL-LENLLG 113
             VD++         + ++         + + ++LS   ++       NL     +    G
Sbjct: 3125 MVDVAVAGRTVVTSTALVDQDAHPVKGLMTVSALSDAMTDAKPVVRANLSAAADVGIAAG 3184

Query: 114  ASHETIPQLYNRSLSTVEKKLAKRTIAQIS---AVLNQCIS-TTQESSPNLEDFYDIDYL 169
             +    P+      S     L +  +  ++     L+  +S         L     +   
Sbjct: 3185 GAVALHPKSGAGPASVAGYVLPRLLVTGMTPPDGALDVALSTPDLAIEVELSAPVTLASA 3244

Query: 170  KKNTNRLSNEFVT--TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-----QNKSEN 222
            + N      +      +   + + +         P E L       L+       +    
Sbjct: 3245 QANVVLREQDPAIGPVVEATIEVGDRRIYVR---PVEELRPARAYFLTVGTGLETDAQLP 3301

Query: 223  QSEDLIDPFARKTYQLNVNIDTRI--------NLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                ++  F  +     + I + +             ++   + ++ G  + F  RE T 
Sbjct: 3302 LERRVVSSFRTRAVDAPLPIVSDVVPSAGPADGGTTVSIS-ALNVQEGARVFFSDREATE 3360

Query: 275  AILSANGKEIYSCELGRVG 293
              + A+G+      +G +G
Sbjct: 3361 VQVLADGRVSAKTPMGVLG 3379


>gi|330963053|gb|EGH63313.1| type III secretion protein HrcQa [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 238

 Score = 39.2 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%)

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
            E      + + + +      L    ETLL     +   Q + +   E            
Sbjct: 116 AELTVGCRIQVRLADQQIHAHLHATPETLLTLLRSAPW-QARLKPLDERWS--------- 165

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             +     +     TL+ + +L+ G V+
Sbjct: 166 --ITTPLILGELSLTLEQLTSLRPGDVL 191


>gi|221640809|ref|YP_002527071.1| Surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides KD131]
 gi|221161590|gb|ACM02570.1| Surface presentation of antigens (SPOA) protein precursor
           [Rhodobacter sphaeroides KD131]
          Length = 51

 Score = 38.9 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 265 IPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITDRIN 305
           +P   R      L    + I   EL    G       +R+T+  N
Sbjct: 2   LPLDRRVDDPVELYVGDRLIGRGELTELEGEQAGQLAVRLTEVAN 46


>gi|325186837|emb|CCA21382.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1749

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 50/160 (31%), Gaps = 16/160 (10%)

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK--KNTN 174
             +    +RS    +  L + TI +     +       E      + + +  +    +  
Sbjct: 351 RFLSSSPSRSEHYAKLILGQATIERAIGNHSDAWELVLEFLQRFPEIFGVGNVDQYFDVA 410

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS---EDLI--- 228
                      +       A++F +I+P  +LL T +++ S +N         +      
Sbjct: 411 VRPR---VLAQIRAGFHGEAANFRMILPFVSLLPTKILAKSQKNSQLIVDILQQFWQFLC 467

Query: 229 DPFARKTYQLNVNIDTRINLKKTTL-----KDVVTLKIGQ 263
                +  Q+ ++    +     ++     ++ + L  G 
Sbjct: 468 KNGREREKQVALSSLFELLTASMSIFVLNDREELVLSFGD 507


>gi|330894463|gb|EGH27124.1| type III secretion protein HrcQb [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 130

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 2/102 (1%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            +      S    +E       +          L +++  R    + TL ++  L  G +
Sbjct: 28  EEEEDGEPSGYATAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTI 87

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +         A L    +     EL  V     ++IT  +  
Sbjct: 88  LEVTGISPGHATLCHGEQVGAEGELVDVEGRLGLQITRLVTR 129


>gi|238927438|ref|ZP_04659198.1| chemotaxis protein CheC [Selenomonas flueggei ATCC 43531]
 gi|238884720|gb|EEQ48358.1| chemotaxis protein CheC [Selenomonas flueggei ATCC 43531]
          Length = 213

 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 6/152 (3%), Positives = 26/152 (17%), Gaps = 9/152 (5%)

Query: 25  LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84
               +    +   +G +            +   ++++           +        +  
Sbjct: 14  AALSEAQLDVLREIGNVGAGNSATALSRLIKYRIEMNVPHVALVPIEEVPEFVGGPELVV 73

Query: 85  QASLSSWSS----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
                        N            L++ L G                +++        
Sbjct: 74  AGIFLRVYGKAPSNILFLIPRESAFALVDTLYGRERGATS-----EFDLMDESALMEIGN 128

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
            ++        +    S           +   
Sbjct: 129 ILAGSYLNAFYSFTGISMLPSVPALAVDMAGA 160


>gi|237800003|ref|ZP_04588464.1| type III secretion protein HrcQa [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022858|gb|EGI02915.1| type III secretion protein HrcQa [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 238

 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%)

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
            E V    + + + +      L    +TL+     +     +                  
Sbjct: 116 AEPVVGCRIQVRLGDQRVHAHLHATPQTLITLLRSAQWQARQQP---------LDESLS- 165

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             VNI   +     TL+ + +L+ G V+
Sbjct: 166 --VNIPLIVGELSLTLEQLASLRPGDVV 191


>gi|304392513|ref|ZP_07374453.1| hypothetical protein R2A130_2112 [Ahrensia sp. R2A130]
 gi|303295143|gb|EFL89503.1| hypothetical protein R2A130_2112 [Ahrensia sp. R2A130]
          Length = 291

 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 52/217 (23%), Gaps = 24/217 (11%)

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
             +                    L  L G          +  L+   ++L       +  
Sbjct: 69  ILATEP-DCGLTFTLDATAQAICLATLTGTKTVGSSHNIDGPLT---RELIIAIAKSVVG 124

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV----TTINMNMTIENVASSFVLI 200
                   T   SP  +          + + +    +    +   +    E V     L 
Sbjct: 125 AFALASKITLPQSPVWKSQDTDSAKSGSQSVVLGIAIPQKRSAALLKQEFETVLGRITLN 184

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           I    +        +   K+  Q                +++      ++ +L  +  L+
Sbjct: 185 IDARLMK--VETPSAFIAKATTQD---------AVLTSEIDLRVTATARRMSLLSIGELQ 233

Query: 261 IGQVIPFLHREKTCAILSANGK--EIYSCELGRVGKN 295
           +G VI           + A+ K   +    + +V   
Sbjct: 234 VGDVIGL---PDDKLSVRASTKDGPLLEGTMVQVNGQ 267


>gi|288871046|ref|ZP_06116175.2| putative metallophosphoesterase [Clostridium hathewayi DSM 13479]
 gi|288864972|gb|EFC97270.1| putative metallophosphoesterase [Clostridium hathewayi DSM 13479]
          Length = 686

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 5/69 (7%)

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL- 289
                      +          L DV  L+    +          I+  NGK +Y  ++ 
Sbjct: 355 LKHYIDDTKTAVPAYFFRTDIYLNDVSDLEA---LEAEIAYDDAVIVYINGKNVYEGQVP 411

Query: 290 -GRVGKNYT 297
            G   KN  
Sbjct: 412 EGGYDKNLA 420


>gi|284164244|ref|YP_003402523.1| chemotaxis protein CheC [Haloterrigena turkmenica DSM 5511]
 gi|284013899|gb|ADB59850.1| CheC, inhibitor of MCP methylation [Haloterrigena turkmenica DSM
           5511]
          Length = 418

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/161 (6%), Positives = 35/161 (21%), Gaps = 8/161 (4%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
            LL RL    G +         +     + + K       +D  +            I  
Sbjct: 196 ALLDRLRTSGGIEYDKLDGFDRMAERGAEEVAKTATTLTGIDTSVEIRRLNFVSLEAIPE 255

Query: 76  SFKENFVFSQ-ASLSSW-SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
              +  +           S              +++ +         ++       +   
Sbjct: 256 QVADQKLVGVAFEFDGMPSGYLLFLFDEESAHEIVDAM------VPMEVDEDGFGEMGTS 309

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN 174
             K     +++      +   +++ +      I  +     
Sbjct: 310 AIKELGNIMASGFLDGWANVLDTTIDHSTPEFIHDMGAAAV 350


>gi|169234958|ref|NP_034209.2| desmoglein-1-alpha precursor [Mus musculus]
 gi|60416372|sp|Q61495|DSG1A_MOUSE RecName: Full=Desmoglein-1-alpha; Short=Desmoglein-1;
           Short=Dsg1-alpha; AltName: Full=DG1; AltName: Full=DGI;
           AltName: Full=Desmosomal glycoprotein I; Flags:
           Precursor
 gi|148664530|gb|EDK96946.1| mCG140885 [Mus musculus]
 gi|159155868|gb|AAI54411.1| Desmoglein 1 alpha [Mus musculus]
          Length = 1057

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 52/215 (24%), Gaps = 29/215 (13%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +      P +  LL      +G         S +G    +        K     DIS   
Sbjct: 724 ADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIGEDLDESFLDTLGPKFKKLADISLGK 783

Query: 65  CQSGKFSHIIHSFKENFV--FSQASLSSWSSNFFIGCSNNLVITLL---ENLLGASHETI 119
            +   +     S+                  +     S +   T +              
Sbjct: 784 -EIDSYPDSDPSWPPQSTEPMCPQHTEPL-GSGHPPISPHFGTTTVISENAYHSGPGVQH 841

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
           P      L      +             +  +T+    P++         ++ +N +  E
Sbjct: 842 PVPIPDPLGYGNVTV------------RESYTTSGTLKPSV----HFHDNQQASNVVVTE 885

Query: 180 FVTT------INMNMTIENVASSFVLIIPQETLLK 208
            V        ++  + I ++     +I+ +  +  
Sbjct: 886 RVVGPISGADLHGMLEIPDLRGGANVIVTERVIAP 920


>gi|315281354|ref|ZP_07869994.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
 gi|313614993|gb|EFR88497.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
 gi|328475657|gb|EGF46406.1| flagellar motor switch domain protein [Listeria monocytogenes 220]
          Length = 54

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             + D+  L IG V+    +      +  + K++   E   + +N+ I I++ 
Sbjct: 1   MPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 53


>gi|255028845|ref|ZP_05300796.1| flagellar motor switch protein [Listeria monocytogenes LO28]
          Length = 85

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
           R+   + VN+  R+  K+  + D+  L IG V+    
Sbjct: 28  RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEK 64


>gi|257487232|ref|ZP_05641273.1| type III secretion component protein HrcQa [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|238577789|gb|ACR46700.1| HrcQa [Pseudomonas syringae pv. tabaci]
 gi|331009154|gb|EGH89210.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 238

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%)

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             + +          L    +TLL+    +   Q ++    E              V   
Sbjct: 122 CRVQIQRGGEQLHAHLHATPDTLLRLLQSAPW-QARTRTVDESWS-----------VASP 169

Query: 244 TRINLKKTTLKDVVTLKIGQVI 265
             I     TL+ + +L+ G V+
Sbjct: 170 LIIGEMSLTLEQIASLRPGDVV 191


>gi|330984966|gb|EGH83069.1| type III secretion protein HrcQa [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 238

 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%)

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             + +          L    +TLL+    +   Q ++    E              V   
Sbjct: 122 CRVQIQRGGEQLHAHLHATPDTLLRLLQSAPW-QARTRTVDESWS-----------VASP 169

Query: 244 TRINLKKTTLKDVVTLKIGQVI 265
             I     TL+ + +L+ G V+
Sbjct: 170 LIIGEMSLTLEQIASLRPGDVV 191


>gi|218672164|ref|ZP_03521833.1| flagellar motor switch protein [Rhizobium etli GR56]
          Length = 142

 Score = 37.7 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 3/42 (7%), Positives = 13/42 (30%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                + +++   +   +  +  ++ L  G  I    +    
Sbjct: 101 EMIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEP 142


>gi|224438105|ref|ZP_03659040.1| flagellum-specific ATP synthase [Helicobacter cinaedi CCUG 18818]
 gi|313144545|ref|ZP_07806738.1| flagellum-specific ATP synthase FliI [Helicobacter cinaedi CCUG
           18818]
 gi|313129576|gb|EFR47193.1| flagellum-specific ATP synthase FliI [Helicobacter cinaedi CCUG
           18818]
          Length = 472

 Score = 37.7 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 55/174 (31%), Gaps = 6/174 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   K+ + +G    + +P+   + ++ D+  +     +   S ++  +      + A 
Sbjct: 218 AKAPIKVIALIGER-GREVPEFIYKNLNNDLTNTILVVATSDDSPLMRKYGAFSAMAIAE 276

Query: 88  -LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
              S  ++      +     + +  +G +    P             L  + + +     
Sbjct: 277 YFKSLGNDVLFIMDSVTRFAMAQREIGLALGEPPTSKG--YPPSVLTLLPQLMERAGK-- 332

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
              + +       L +  D+     + +R   +    +N ++T   +     ++
Sbjct: 333 EDSVGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLNRDLTDMGIYPPINIL 386


>gi|150021311|ref|YP_001306665.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
           BI429]
 gi|149793832|gb|ABR31280.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
           BI429]
          Length = 205

 Score = 37.7 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 54/196 (27%), Gaps = 20/196 (10%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN----FVFSQASL 88
            + + +G +            +   V+IS  S +    S+I   F+              
Sbjct: 11  DLLNEIGNIGTGNAATALSMMIGRKVEISVPSTKVVPISNIPFIFENPEEIVCAVKMKMQ 70

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  ++  V  + + L G   + I       L      + K     +      
Sbjct: 71  EDVEGEILLILNSITVKEITKLLTGIELQDITT-----LDEFSVSMLKEIGNIMCGSYVT 125

Query: 149 CISTTQESSPNLEDFYDIDYLKKN-------TNRLSNEFVTTINMNMTIENV----ASSF 197
            +S       N E       +              + +++  I  ++ IE +        
Sbjct: 126 ALSGFTNFFINPEPPEIAVDMISAILAEVSLQVSKTEDYILLIETSIEIEGIDKMLTGYL 185

Query: 198 VLIIPQETLLKTTLIS 213
           +L+  +++L K     
Sbjct: 186 LLLPDEQSLKKILEKL 201


>gi|33352148|emb|CAD91923.1| putative Na P-type ATPase [Physcomitrella patens]
          Length = 1058

 Score = 37.3 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
                ++  +         VL+I   T+          KT        + S         
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                  Q       RI+       DV+T ++G +IP   R      L  +   +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180


>gi|292669756|ref|ZP_06603182.1| CheC family chemotaxis protein [Selenomonas noxia ATCC 43541]
 gi|292648553|gb|EFF66525.1| CheC family chemotaxis protein [Selenomonas noxia ATCC 43541]
          Length = 207

 Score = 37.3 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/129 (5%), Positives = 25/129 (19%), Gaps = 9/129 (6%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
              +    +   +G +            +   ++++           +        +   
Sbjct: 9   ELSEMQLDVLQEIGNVGAGNSATALSRLIQRRIEMNVPQVALVPIEDVPEFVGGPELVVV 68

Query: 86  ASLSSWSS----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
                       N            L++ LLG             L  +++         
Sbjct: 69  GIFLRVYGKAPSNILFLIPRESAFALVDTLLGRERGETT-----ELDAMDESALMEIGNI 123

Query: 142 ISAVLNQCI 150
           ++       
Sbjct: 124 LAGSYLNAF 132


>gi|33352140|emb|CAD91919.1| putative Na P-type ATPase [Physcomitrella patens]
          Length = 1058

 Score = 37.3 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
                ++  +         VL+I   T+          KT        + S         
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                  Q       RI+       DV+T ++G +IP   R      L  +   +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180


>gi|168055850|ref|XP_001779936.1| Na+ P-type-ATPase [Physcomitrella patens subsp. patens]
 gi|162668650|gb|EDQ55253.1| Na+ P-type-ATPase [Physcomitrella patens subsp. patens]
          Length = 1058

 Score = 37.3 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
                ++  +         VL+I   T+          KT        + S         
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                  Q       RI+       DV+T ++G +IP   R      L  +   +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180


>gi|257388203|ref|YP_003177976.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM
           12286]
 gi|257170510|gb|ACV48269.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM
           12286]
          Length = 197

 Score = 37.3 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/125 (8%), Positives = 31/125 (24%), Gaps = 4/125 (3%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE--NFVFSQASLSSWSSNFFIGCSNNLV 104
                +   ++ ++  T         I     +      S   L           +    
Sbjct: 22  ANHLSQMTGMETEMEITKINFIDIPDIKTHIGDERQIGISIRMLEPPHGYILFLFNAENA 81

Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
             L   ++G   ET         + +E+   +     +++      +   E++ ++    
Sbjct: 82  KKLASGMIGDMGETSDATDG--FTDMERSAIQEIGNIMTSGFIDGWANVLETTIDISTPN 139

Query: 165 DIDYL 169
                
Sbjct: 140 FTFGP 144


>gi|153954746|ref|YP_001395511.1| hypothetical protein CKL_2128 [Clostridium kluyveri DSM 555]
 gi|219855210|ref|YP_002472332.1| hypothetical protein CKR_1867 [Clostridium kluyveri NBRC 12016]
 gi|146347604|gb|EDK34140.1| CheC [Clostridium kluyveri DSM 555]
 gi|219568934|dbj|BAH06918.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 198

 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 3/84 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
                +  +          + ++  VDI+        F  I  S + + +     +    
Sbjct: 12  DALREVVNIGTGNAATALSQLINKKVDITVPDVNIVPFDDIFTSIEGDEIVVGVIVRILG 71

Query: 93  ---SNFFIGCSNNLVITLLENLLG 113
               N          + L+  L+G
Sbjct: 72  DAPGNILFIFEKETALELISMLMG 95


>gi|313895811|ref|ZP_07829365.1| putative chemotaxis protein CheC [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975236|gb|EFR40697.1| putative chemotaxis protein CheC [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 207

 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/173 (8%), Positives = 34/173 (19%), Gaps = 16/173 (9%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
            +   +G +            +   ++++       K   +        +          
Sbjct: 16  DVLQEIGNVGAGNSATALSRLIQHRIEMNVPHVALVKIEDVPEFVGGPELVVVGIFLRVY 75

Query: 93  S----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N            L + LLG      P      L  +++         ++     
Sbjct: 76  GKAPSNILFLIPRESAFALADTLLGRERGETP-----ELDAMDESALMEIGNILAGSYLN 130

Query: 149 CISTTQESSPNLEDFY-------DIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
              T    S               I  +         +    I  N   E+  
Sbjct: 131 AFYTFTGMSMLPSVPALAVDMAGAILNVVLVQLGEMGDHALLIETNFQAEDRT 183


>gi|237734782|ref|ZP_04565263.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382110|gb|EEO32201.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 865

 Score = 36.9 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
           +  V  +     I  V       +    ++    I  + Q     QS + +   +  + +
Sbjct: 58  DFLVIILIFAAIISGVLGDIESTLVILIVIMINAILGTVQTVKAEQSLNSLKELSSPSAK 117

Query: 238 LNVNIDT-RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
           +  +     I  K+ T+ D V L+ G  IP   R    A +  +
Sbjct: 118 VLRDGKVIEIPSKEVTIGDEVYLEAGDFIPADGRILENASMKVD 161


>gi|33352150|emb|CAD91924.1| putative Na P-type ATPase [Physcomitrella patens]
          Length = 977

 Score = 36.9 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
                ++  +         VL+I   T+          KT        + S         
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                  Q       RI+       DV+T ++G +IP   R      L  +   +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180


>gi|33352142|emb|CAD91920.1| putative Na P-type ATPase [Physcomitrella patens]
          Length = 977

 Score = 36.9 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
                ++  +         VL+I   T+          KT        + S         
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                  Q       RI+       DV+T ++G +IP   R      L  +   +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180


>gi|33352138|emb|CAD91918.1| putative Na P-type ATPase [Physcomitrella patens]
 gi|33352146|emb|CAD91922.1| putative Na P-type ATPase [Physcomitrella patens]
          Length = 938

 Score = 36.9 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
                ++  +         VL+I   T+          KT        + S         
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                  Q       RI+       DV+T ++G +IP   R      L  +   +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180


>gi|330507600|ref|YP_004384028.1| PIN domain-containing protein [Methanosaeta concilii GP-6]
 gi|328928408|gb|AEB68210.1| PIN domain protein [Methanosaeta concilii GP-6]
          Length = 605

 Score = 36.9 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           ++           +S   +  ++  +GR G    IRI       ++ +K  
Sbjct: 541 ILWLDGMAGESVDVSVGDEPAFTATVGRRGD---IRIAKSSEMAKRIIKKM 588


>gi|320529407|ref|ZP_08030495.1| putative chemotaxis protein CheC [Selenomonas artemidis F0399]
 gi|320138373|gb|EFW30267.1| putative chemotaxis protein CheC [Selenomonas artemidis F0399]
          Length = 207

 Score = 36.5 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/173 (8%), Positives = 34/173 (19%), Gaps = 16/173 (9%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
            +   +G +            +   ++++       K   +        +          
Sbjct: 16  DVLQEIGNVGAGNSATALSRLIQHRIEMNVPHVALVKIEDVPEFVGGPELVVVGIFLRVY 75

Query: 93  S----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N            L + LLG      P      L  +++         ++     
Sbjct: 76  GKAPSNILFLIPQESAFALADTLLGRERGETP-----ELDAMDESALMEIGNILAGSYLN 130

Query: 149 CISTTQESSPNLEDFY-------DIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
              T    S               I  +         +    I  N   E+  
Sbjct: 131 AFYTFTGMSMLPSVPALAVDMAGAILNVVLVQLGEMGDHALLIETNFQAEDRT 183


>gi|167755813|ref|ZP_02427940.1| hypothetical protein CLORAM_01329 [Clostridium ramosum DSM 1402]
 gi|167704752|gb|EDS19331.1| hypothetical protein CLORAM_01329 [Clostridium ramosum DSM 1402]
          Length = 865

 Score = 36.5 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
           +  V  +     I  V       +    ++    I  + Q     QS + +   +  + +
Sbjct: 58  DFLVIILIFAAIISGVLGDIESTLVILIVITINAILGTVQTVKAEQSLNSLKELSSPSAK 117

Query: 238 LNVNIDT-RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
           +  +     I  K+ T+ D V L+ G  IP   R    A +  +
Sbjct: 118 VLRDGKVIEIPSKEVTIGDEVYLEAGDFIPADGRILENASMKVD 161


>gi|257386983|ref|YP_003176756.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM
           12286]
 gi|257169290|gb|ACV47049.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM
           12286]
          Length = 211

 Score = 36.5 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/160 (5%), Positives = 39/160 (24%), Gaps = 12/160 (7%)

Query: 47  PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSSWSSNFFIGCSNNLV 104
                +   +D  +  +         +      +           +           +  
Sbjct: 25  ADHLSQLTGVDASVRTSQINFLDIGDVKTHLGNDERIGIYVELTEAPGGYVLFVLDPDHG 84

Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE-----SSPN 159
             L   ++G          +   S +E+   +     +++      +   +     ++P+
Sbjct: 85  KRLAGQMMGGIQG-----ADEGFSEMEESALQEIGNIMTSGFIDGWANVLDATIDMTTPS 139

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
           L        +        ++ V  ++ ++  E       +
Sbjct: 140 LLVDDTATIIDSMGGWPDSDLVFVVDSHIVAEGADIDMTV 179


>gi|323186702|gb|EFZ72024.1| flagellar motor switch protein fliN domain protein [Escherichia
           coli RN587/1]
          Length = 39

 Score = 36.5 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NG  I   E+  V   Y +RITD I   ++ 
Sbjct: 1   ILINGYLIAQGEVVVVADKYGVRITDIITPSERM 34


>gi|292655360|ref|YP_003535257.1| taxis cluster protein CheC [Haloferax volcanii DS2]
 gi|291371492|gb|ADE03719.1| taxis cluster protein CheC [Haloferax volcanii DS2]
          Length = 395

 Score = 36.5 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 10/177 (5%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK--ENFVFSQASLSS 90
           +  S L +   +           +D  ++ T  + G  S + + F   +           
Sbjct: 9   RTFSRLAHSGAEKAAGSLTTLAGIDTYVNVTKVELGTKSDVENEFAERDLVSVHIGFSGG 68

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
              +  +  S      L++ L+     T         S  E  +A   +          +
Sbjct: 69  LDGHTVLAFSPESAERLVDALMPGIDATDADGELAESSLKE--VANIMLGGFIDGWADYL 126

Query: 151 STTQES-SPNLEDFYDI-----DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
            TT +  +P   D  +         +   N   +E V      +   + A  F L +
Sbjct: 127 DTTVDITTPTYVDDENDGPLDRVDAEGFENGGDDEHVLVFRNQLEAADNAIEFDLYM 183


>gi|309806986|ref|ZP_07700968.1| copper-exporting ATPase [Lactobacillus iners LactinV 03V1-b]
 gi|308166606|gb|EFO68803.1| copper-exporting ATPase [Lactobacillus iners LactinV 03V1-b]
          Length = 698

 Score = 36.5 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V           +LL   L+    + K+  ++ D  +  A+       +    ++     
Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
            + V  LK+G +I     E   A  +  
Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239


>gi|309804631|ref|ZP_07698696.1| copper-exporting ATPase [Lactobacillus iners LactinV 09V1-c]
 gi|329920456|ref|ZP_08277188.1| copper-exporting ATPase [Lactobacillus iners SPIN 1401G]
 gi|308166023|gb|EFO68241.1| copper-exporting ATPase [Lactobacillus iners LactinV 09V1-c]
 gi|328936132|gb|EGG32585.1| copper-exporting ATPase [Lactobacillus iners SPIN 1401G]
          Length = 698

 Score = 36.5 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V           +LL   L+    + K+  ++ D  +  A+       +    ++     
Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
            + V  LK+G +I     E   A  +  
Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239


>gi|259500980|ref|ZP_05743882.1| copper-exporting ATPase [Lactobacillus iners DSM 13335]
 gi|259167674|gb|EEW52169.1| copper-exporting ATPase [Lactobacillus iners DSM 13335]
          Length = 681

 Score = 36.5 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V           +LL   L+    + K+  ++ D  +  A+       +    ++     
Sbjct: 138 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 194

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
            + V  LK+G +I     E   A  +  
Sbjct: 195 TRPVADLKVGDLIRVQAGENVPADGTIE 222


>gi|325913161|ref|ZP_08175531.1| copper-exporting ATPase [Lactobacillus iners UPII 60-B]
 gi|325477582|gb|EGC80724.1| copper-exporting ATPase [Lactobacillus iners UPII 60-B]
          Length = 690

 Score = 36.5 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V           +LL   L+    + K+  ++ D  +  A+       +    ++     
Sbjct: 147 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 203

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
            + V  LK+G +I     E   A  +  
Sbjct: 204 TRPVADLKVGDLIRVQAGENVPADGTIE 231


>gi|312871534|ref|ZP_07731627.1| copper-exporting ATPase [Lactobacillus iners LEAF 3008A-a]
 gi|311092929|gb|EFQ51280.1| copper-exporting ATPase [Lactobacillus iners LEAF 3008A-a]
          Length = 698

 Score = 36.5 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V           +LL   L+    + K+  ++ D  +  A+       +    ++     
Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
            + V  LK+G +I     E   A  +  
Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239


>gi|302190570|ref|ZP_07266824.1| copper-exporting ATPase [Lactobacillus iners AB-1]
          Length = 698

 Score = 36.5 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V           +LL   L+    + K+  ++ D  +  A+       +    ++     
Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
            + V  LK+G +I     E   A  +  
Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239


>gi|17228018|ref|NP_484566.1| hypothetical protein alr0522 [Nostoc sp. PCC 7120]
 gi|9957317|gb|AAG09315.1| hypothetical protein [Nostoc sp. PCC 7120]
 gi|17129867|dbj|BAB72480.1| alr0522 [Nostoc sp. PCC 7120]
          Length = 312

 Score = 36.2 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                +   Q  V ++ ++   K      + LK+G  I     E     + A    +
Sbjct: 29  RSRIQQLIEQGKVQVNGKVCTSKK-----INLKVGDRITLEVPEAQPLEIQAEDIPL 80


>gi|75909134|ref|YP_323430.1| ribosomal large subunit pseudouridine synthase D [Anabaena
           variabilis ATCC 29413]
 gi|75702859|gb|ABA22535.1| ribosomal large subunit pseudouridine synthase D [Anabaena
           variabilis ATCC 29413]
          Length = 312

 Score = 36.2 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                +   Q  V ++ ++   K      + LK+G  I     E     L A    +
Sbjct: 29  RSRIQQLIEQGKVQVNGKVCTSKK-----INLKVGDRITLEVPEAQPLELQAEDIPL 80


>gi|253576153|ref|ZP_04853485.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844496|gb|EES72512.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 315

 Score = 36.2 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 6/81 (7%), Positives = 17/81 (20%), Gaps = 3/81 (3%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT---TLKDVVTLKIGQ 263
            +         +  E   +        +  +  + +             +K    L  G 
Sbjct: 12  EEKLEWVAGPADAKERIDKYAKTQLGEEFSRSQIQLWIEAGNLVVNGAPVKANYKLAEGD 71

Query: 264 VIPFLHREKTCAILSANGKEI 284
            I  +  E     +      +
Sbjct: 72  RIVLVIPEAEPTEIVPEDIPL 92


>gi|207109698|ref|ZP_03243860.1| flagellar motor switch protein FliY [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 164

 Score = 36.2 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
              + +N+  RI  KK  LKDVV++ IG V+        
Sbjct: 126 LLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 164


>gi|118588367|ref|ZP_01545776.1| ABC transporter, ATP-binding protein [Stappia aggregata IAM 12614]
 gi|118439073|gb|EAV45705.1| ABC transporter, ATP-binding protein [Stappia aggregata IAM 12614]
          Length = 602

 Score = 36.2 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 57/167 (34%), Gaps = 7/167 (4%)

Query: 15  PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
           P++L  + G     +   + +         +  ++    +      ++ S  +G++S  +
Sbjct: 186 PVILIPILGFGRQVRKRSRFAQDTLAEASAYASEMLGS-VRTLQAFTHESLSAGRYSDAV 244

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
           +   +    +  + ++ +    +    ++V  L    +GAS     ++    LS     L
Sbjct: 245 NEAFQAARQAIVARAALTGFAIMVIGASIVAVL---WIGASDVFAGRITGGELSQF--LL 299

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
                A   A L++      +++   E   ++  ++          V
Sbjct: 300 YSILAAGSLAALSEVWGELSQAAGAAERLSELLEIQP-EIAAPANPV 345


>gi|51892676|ref|YP_075367.1| chemotaxis signal transduction protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|51856365|dbj|BAD40523.1| chemotaxis signal transduction protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 198

 Score = 35.8 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/150 (6%), Positives = 33/150 (22%), Gaps = 10/150 (6%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI--IHSFKENFVFS 84
                  +   +     +   +   +    ++ +            +  +    ++ V +
Sbjct: 4   QPSQWTALEQMVTQALAES-SRSLSQMTTGEIRLDAPQLSFVPLRELPGVAGGPDHVVTA 62

Query: 85  QASL--SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
                      +  +         L++ LLG      P    R L  + +          
Sbjct: 63  VYVGIEGELQGHVILLFQPKEARALVDLLLG-----HPAGTCRELDELGRSALAEVGNIC 117

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
            +     I+              ++ +   
Sbjct: 118 GSAFMNAIADRSGLEVKPTPPVLLEDMAGA 147


>gi|303235480|ref|ZP_07322093.1| copper-exporting ATPase [Prevotella disiens FB035-09AN]
 gi|302484347|gb|EFL47329.1| copper-exporting ATPase [Prevotella disiens FB035-09AN]
          Length = 716

 Score = 35.8 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
                      +LL   L+    + K+  ++ D  +  A+       +    ++      
Sbjct: 172 EQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIET 228

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSAN 280
           + V  LK+G +I     E   A  +  
Sbjct: 229 RPVADLKVGDLIRVQAGENVPADGTIE 255


>gi|154174001|ref|YP_001407433.1| flagellum-specific ATP synthase [Campylobacter curvus 525.92]
 gi|112803229|gb|EAU00573.1| flagellar protein export ATPase FliI [Campylobacter curvus 525.92]
          Length = 435

 Score = 35.8 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/171 (8%), Positives = 55/171 (32%), Gaps = 6/171 (3%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
              K+ + +G    + +P+  ++ +  ++D +     +   S ++  +      S A   
Sbjct: 185 APIKVVALIGER-GREVPEFIEKNLGGNLDGTVIVVATSDDSSLMRKYGAFCAMSVAEYF 243

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            +  ++      +     + +  +G +    P       S+    L  + + +      +
Sbjct: 244 KNQGNDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSS--LTLLPQLMERAGK--EE 299

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
              +       L +  D+     + +R   +    ++  +T   +     +
Sbjct: 300 GKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINI 350


>gi|291277238|ref|YP_003517010.1| flagellum-specific ATP synthase [Helicobacter mustelae 12198]
 gi|290964432|emb|CBG40282.1| flagellum-specific ATP synthase [Helicobacter mustelae 12198]
          Length = 434

 Score = 35.8 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/174 (8%), Positives = 54/174 (31%), Gaps = 6/174 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            K   K+ + +G    + +P+  ++ +D +++ +     +   S ++  +      + A 
Sbjct: 181 SKAPIKVVALIGER-GREVPEFIQKNLDNNLENTVIVVATSDDSALMRKYGAFSAMAVAE 239

Query: 88  LSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                 +       +     + +  +G +    P             L  + + +     
Sbjct: 240 FFKNQGHDVLFIMDSVTRFAMAQREIGLALGEPPTSKG--YPPSVLALLPQLMERAGK-- 295

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
            +   +       L +  D+     + +R   +    ++  +T   +     ++
Sbjct: 296 EEGRGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLSRELTDFGIYPPIHIL 349


>gi|227500140|ref|ZP_03930210.1| copper-exporting ATPase [Anaerococcus tetradius ATCC 35098]
 gi|227217757|gb|EEI83059.1| copper-exporting ATPase [Anaerococcus tetradius ATCC 35098]
          Length = 697

 Score = 35.8 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
                      +LL   L+    + K+  ++ D  +  A+       +    ++      
Sbjct: 155 EQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIET 211

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSAN 280
           + V  LK+G +I     E   A  +  
Sbjct: 212 RPVADLKVGDLIRVQAGENVPADGTIE 238


>gi|57640572|ref|YP_183050.1| chemotaxis protein cheC [Thermococcus kodakarensis KOD1]
 gi|57158896|dbj|BAD84826.1| chemotaxis protein cheC [Thermococcus kodakarensis KOD1]
          Length = 207

 Score = 35.8 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 47/186 (25%), Gaps = 12/186 (6%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFK----ENFVFSQASL-SSWSSNFFIGCSNN 102
               E +   +++     +       +         N       +         +     
Sbjct: 24  TSLSEMVGGPIEMEPPEVEVLSRVEFLKRLTQNGISNSFVVAFDITEGLGGLTVLQFPTK 83

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP---- 158
             I L   L+G     + +L     S + + +    I+  + +L + +      SP    
Sbjct: 84  SAINLSAALMGMDPSGMKELDEMGKSAITE-VGNILISVYTDILAKLVGEPVSLSPPKPI 142

Query: 159 -NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
            +L D           N      +             S F L+  +E+  K      +  
Sbjct: 143 NSLYDIEKELNRPDLRNVD-KIMLFKTRFYEENIGFESFFYLVPDEESFEKLVKRLEAQV 201

Query: 218 NKSENQ 223
            +   +
Sbjct: 202 KEEGGE 207


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.309    0.138    0.316 

Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,670,758,375
Number of Sequences: 14124377
Number of extensions: 51294873
Number of successful extensions: 199240
Number of sequences better than 10.0: 2892
Number of HSP's better than 10.0 without gapping: 2613
Number of HSP's successfully gapped in prelim test: 279
Number of HSP's that attempted gapping in prelim test: 193456
Number of HSP's gapped (non-prelim): 3245
length of query: 318
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 179
effective length of database: 2,879,505,227
effective search space: 515431435633
effective search space used: 515431435633
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 81 (35.8 bits)