BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] (318 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|302878292|ref|YP_003846856.1| flagellar motor switch protein FliM [Gallionella capsiferriformans ES-2] gi|302581081|gb|ADL55092.1| flagellar motor switch protein FliM [Gallionella capsiferriformans ES-2] Length = 329 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 40/312 (12%), Positives = 101/312 (32%), Gaps = 8/312 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTI---EKISSSLGYLYKKFLPKIFKEKMDLD 57 + G++ + P + R ++ + + + + + Sbjct: 17 VNGETEDEKAHPEADVGEIRPYNLASQERIVRGRMPTMEIINERFARLFRIGLFNFIRRT 76 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 +IS + KF + + + N NLV +++N+ G Sbjct: 77 PEISVGPVRVLKFGEFVRNLAVPTNLNIIQPKPLRGNGLFIFDPNLVFLVVDNMFGGDGR 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 ++ R + E+++ ++ +A + + T + Sbjct: 137 FHTRVEGREFTQTEQRIIQKMLAVVFETYAKAWETVYPLEFEFVRSEM--NPQFANIATP 194 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTY 236 NE V ++ + +F + +P TL + + Q + + + +R+ Sbjct: 195 NEVVIVTTFDIELGGNGGAFHICMPYSTLEPVKDLLFNNIQGEHLAVDKRWLQLLSRQVQ 254 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + TL+ V+ +++G VIP S +G I C+ G Y Sbjct: 255 CAEIELAATLGQANITLERVLKMRVGDVIPLN--VDENITASIDGVPIMECKYGVFNNQY 312 Query: 297 TIRITDRINFDQ 308 ++I + ++ Sbjct: 313 ALKIVKMLTTNE 324 >gi|152980580|ref|YP_001353124.1| flagellar motor switch protein FliM [Janthinobacterium sp. Marseille] gi|151280657|gb|ABR89067.1| FliM flagellar motor switch protein [Janthinobacterium sp. Marseille] Length = 332 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 91/306 (29%), Gaps = 11/306 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 P + R+ + + + L + ++S + Sbjct: 33 GVRPYNLATQERIVRG------RMPTLEIINERFSRLLRIGLFNFLHRSAEVSIGPVRVS 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K+S I + + + I NLV L++NL G ++ R + Sbjct: 87 KYSEFIRNLVVPTNLNLIHMKPLRGTGLIVLDPNLVFLLVDNLFGGDGRFHTRVEGRDFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + I + E + NE V + Sbjct: 147 QTEQRIIQRILGIIFETYAKSWEPVYPVE--FEYIRSEMNTQFANIATPNEVVVATTFTI 204 Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + V+ P + + S Q ++ + I ++ V I + Sbjct: 205 ELGPVSGDMHFCTPYAMIEPIRDLLTSSMQGETLEMDKRWIRLMTQQIQTAEVEILANMG 264 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 K TL D++ ++ G +IP + + C G++ Y +R+ I Sbjct: 265 SAKVTLGDILNMQKGDIIPIAVP--DTITAEVDSVPVMECSYGKLNGQYALRVEKLIYSA 322 Query: 308 QKSLKN 313 + + Sbjct: 323 NDTTQG 328 >gi|91776323|ref|YP_546079.1| flagellar motor switch protein FliM [Methylobacillus flagellatus KT] gi|91710310|gb|ABE50238.1| flagellar motor switch protein FliM [Methylobacillus flagellatus KT] Length = 335 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 38/304 (12%), Positives = 97/304 (31%), Gaps = 7/304 (2%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 +T L P + ++ + + + + L + ++S Sbjct: 23 EDDTPALDPAGVREYNLATQERIVRGRMPTLEIINERFARLLRIGLFNFLRRTTEVSVGP 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S I + + + + LV +++NL G ++ Sbjct: 83 VKISKYSEFIRNLVVPTNLNLVQMKPLRGTALMVFDPTLVFLIVDNLFGGDGRFHTRVEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R +A + + + E + NE V + Sbjct: 143 RDFTQTEQRIIQRVLAIVFETYAKSWEPVYKLE--FEYIRSEMNTQFANIATPNEVVVST 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 N+ + + + P + + S Q ++ + + ++ V + Sbjct: 201 TFNIELGSASGEIHFCFPYSMIEPIRDLLTSPLQGEALGVDKRWVRLMTQQIQSAEVMLI 260 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + TL D++ +K+G VIP + + C+ G Y +R+ Sbjct: 261 ADLAKAEMTLGDILNMKVGDVIPL--SISEEIEAKVDNVPVMQCKYGVFNGQYALRVEKL 318 Query: 304 INFD 307 + + Sbjct: 319 LRSN 322 >gi|325981184|ref|YP_004293586.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212] gi|325530703|gb|ADZ25424.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212] Length = 325 Score = 265 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 39/309 (12%), Positives = 100/309 (32%), Gaps = 11/309 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ ++ + R+ + + + L M VDI Sbjct: 25 VKEEAEKGGIRNYNLATQERIVRG------RMPTYEIINERFARLLRIGLFNFMRRTVDI 78 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + KFS + + + + L+ +++NL G Sbjct: 79 AVGPVKVIKFSEFVRNLVVPTNLNMVHMKPLRGTALFVFDPELIFLIVDNLFGGDGRYHT 138 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ +R + + + + E + T NE Sbjct: 139 RVEGRDFTQTEQRIIQRLLGVVFDEYEKSWKSVYPIQ--FEYVRSEMNPQFATIATPNEV 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V + ++ + N + IP + S+ Q + I +++ Sbjct: 197 VVCVTFDIDMGNKGGGLHVCIPYSMVEPIRDTLYSALQGDHLEVDKRWIKLLSQQVQGAE 256 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + K T + +++++ G +IP + + +G + C G + +Y +R Sbjct: 257 VELVANLGGAKVTFEQILSMQSGDIIPLEIPKS--ISVCVDGVPVMDCRYGTMNGHYALR 314 Query: 300 ITDRINFDQ 308 + I+ + Sbjct: 315 VNSMISRSE 323 >gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105] gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105] Length = 348 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 106/312 (33%), Gaps = 11/312 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H+ P + R+ + + + + M +IS Sbjct: 30 THEGVRPYNLATQERIVRG------RMPTLEIINERFARLIRIGLFNFMRRSPEISVGPV 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + K++ I + + ++ N +LV +++NL G ++ R Sbjct: 84 KVLKYNEFIRNLVVPTNLNIMAMKPLRGNALFIFDPSLVFAVIDNLFGGDGRFHTRVEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ R + I + + P E + + +E V T + Sbjct: 144 DFTQTEQRIIARMLEVIREEFVKAWAPVFPLKP--EYLRSEMHTQFANIATPSEIVVTTS 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ + S + IP T+ + S Q + + ++ V++ Sbjct: 202 FSIELGAGGGSLHICIPYSTMEPIRDLLYSSMQGDQAEPDKRWVTMLKKQVQMAEVDLVA 261 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + T+ D++ L+IG VIP + +++C G G Y +++ + + Sbjct: 262 SLASTQLTVADIMELRIGDVIPIE--IDKVIEARVDNVPVFNCSYGTSGGQYALKVEEVL 319 Query: 305 NFDQKSLKNFLH 316 +S + L+ Sbjct: 320 AVSNESHADALN 331 >gi|82702481|ref|YP_412047.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC 25196] gi|82410546|gb|ABB74655.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC 25196] Length = 326 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 38/305 (12%), Positives = 93/305 (30%), Gaps = 11/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 + + P + R+ + + + L M +++ Sbjct: 27 QSTANPGFRPYNLATQERIVRG------RMPTLEIINERFARLLRLGLFNFMRRSANVTA 80 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + KFS + + + + LV +++NL G +P+ Sbjct: 81 GPVRVMKFSEFVRNLAAPSNLNLVHIKPLRGTSLFVFDPTLVFLVVDNLFGGDGRFLPKT 140 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ +R + + + E + NE V Sbjct: 141 EGRDFTQTEQRIIQRLLNLVFDSYGKSWHPVYPIE--FEYLRAETNTQFANVATPNEVVV 198 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241 + +V + +P L + S+ Q ++ + + +++ V Sbjct: 199 ATTFEVNFGSVVGEMHICMPYSILEPIRDLLSSTLQGEALEVDKRWVGRLSKQVQSAEVT 258 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + L ++ +K+G VIP S +G + C+ G Y +R+ Sbjct: 259 LLANLTHAQVRLDQILNMKVGDVIPLDIP--EFVTASVDGVPVMECKYGISNGRYALRME 316 Query: 302 DRINF 306 + Sbjct: 317 KMLAS 321 >gi|188586031|ref|YP_001917576.1| flagellar motor switch protein FliM [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350718|gb|ACB84988.1| flagellar motor switch protein FliM [Natranaerobius thermophilus JW/NM-WN-LF] Length = 333 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 41/314 (13%), Positives = 101/314 (32%), Gaps = 14/314 (4%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + Q + P A+ K + + + + L + V+I Sbjct: 28 KQQDTQQKVKPYDFRRPAKF------SKDQIRTLQMINENFARLLSTYLSAYLRSYVEIE 81 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 S + + S + S + + N+ +++ L+G ET Sbjct: 82 LASVDQVTYDEFMRSLTNPTIMGIFSAPPMEGKSLMEMNPNIAFAVIDRLMGGPGETFES 141 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 L+ +E+ +A++ ++ + + E P E + + NE V Sbjct: 142 TG--ELTEIEEAVARKIFNRMLDSMLEAWKNVGELEPEFERIE--NNPQFTQIISPNEIV 197 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS----QNKSENQSEDLIDPFARKTYQ 237 + ++ + F + +P L + + +E+ + ++ Sbjct: 198 AVVAFSVKVGEAEGLFNVCLPYIFLEPVIDRLSARFWFATGHQKKITEEESQALKNRLHK 257 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + + ++K+ + L+ G VI ++ L K + + G + Sbjct: 258 TQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTKFKGKPGSIKNKLA 317 Query: 298 IRITDRINFDQKSL 311 ++IT + SL Sbjct: 318 VQITQIVREGDDSL 331 >gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] Length = 334 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 94/297 (31%), Gaps = 11/297 (3%) Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70 P + R+ + + + L + V+IS + K+ Sbjct: 36 RPYNLATQERIVRG------RMPTLEIINERFARLLRIGLYNFLRRGVEISVGPVRVSKY 89 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 S I + + + + +LV +++NL G ++ R + Sbjct: 90 SEFIRNLVVPTNLNLVQFKPLRGTALMIFNPDLVFLMVDNLFGGDGRFHTRVEGRDFTQT 149 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 E ++ +R + + + + NE V + + + Sbjct: 150 EHRIIQRILNIVFEAYGKSWEPVYPIEFEFIRSEM--NTQFANIATPNEVVVAVTFAIEL 207 Query: 191 ENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 ++ +P + + S Q ++ + I ++ V I + Sbjct: 208 GQISGEMHFCMPYSMIEPIKDLLTSSLQAENLEVDKRWIRLMRQQIQLAEVEIVADLGTA 267 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + +L+D+V LK+G VIP +G + C G+ YT+R+ ++ Sbjct: 268 EVSLRDIVNLKVGDVIPLDIPP--TIEAKVDGVPVMECAYGKFNGQYTLRVEKLLST 322 >gi|71906405|ref|YP_283992.1| flagellar motor switch protein FliM [Dechloromonas aromatica RCB] gi|71846026|gb|AAZ45522.1| Flagellar motor switch protein FliM [Dechloromonas aromatica RCB] Length = 338 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 39/312 (12%), Positives = 96/312 (30%), Gaps = 7/312 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58 + G++ S + ++ + + + ++L M + Sbjct: 18 VTGETDEPEESEGEGAGVRAYNIGTQERIVRGRMPTLELVNERFARYLRIGLFNYMHRNA 77 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + K+S I + + NLV +++N+ G Sbjct: 78 EISVGPIRVQKYSEFIRNLVVPTNLNLVIAKPLRGTALFVFDPNLVFLVVDNMFGGDGRF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R + E+++ + + + ++ + + E + + Sbjct: 138 HTRVEGRDFTPTEQRIIQGLLNVVFTEYSKSWKPVYDIN--FEYIRSEMNSQFANIATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQ 237 E V + + + + P L + S Q+ + + I ++ Sbjct: 196 EIVVSTTFTLEFGGATADMHICFPYSMLEPIRDLLYSTMQSDQLSSDKRWIGTLRKQLQG 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V I + K TL ++ LK+G VIP + + C G+ Y Sbjct: 256 AEVEIVALLGSGKITLGQILKLKVGDVIPLHIP--DKIEALVDSVPLMECTYGQQSGQYA 313 Query: 298 IRITDRINFDQK 309 +++ I + Sbjct: 314 LKVDRFIASSPE 325 >gi|253996306|ref|YP_003048370.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8] gi|253982985|gb|ACT47843.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8] Length = 334 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 37/311 (11%), Positives = 94/311 (30%), Gaps = 12/311 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + + R+ + + + + + V++S Sbjct: 29 SEAEGVRDYNLATQERIVRG------RMPTLEIINERFARLVRIELFNFLRRTVEVSVGP 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S I + + + + LV +++N+ G ++ Sbjct: 83 VRITKYSDFIRNLVVPTNLNLVQMKPLRGTALMVFDPTLVFLVVDNMFGGDGRFHTRVEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R +A + + E + NE V Sbjct: 143 RDFTQTEQRIIQRILAIVFETYAKSWEPVYPIE--FEYLRSEMNTQFANIATPNEVVVVT 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 N+ + + +P + + S Q + + + ++ + I Sbjct: 201 TFNVELGPASGEIHFCMPYSMVEPIRDLLTSPLQGEVLGADKRWVKLMTQQVQAAEIEIV 260 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + L V+ +K+G VIP +G + C+ G Y +R+ Sbjct: 261 ADLATTEMHLGKVLNMKVGDVIPISM--DDAIEAKVDGVPVMLCKYGLFNGQYALRVEKL 318 Query: 304 INFDQ-KSLKN 313 + + + +K Sbjct: 319 LRSNSTEYIKG 329 >gi|302343739|ref|YP_003808268.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM 2075] gi|301640352|gb|ADK85674.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM 2075] Length = 328 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 41/314 (13%), Positives = 100/314 (31%), Gaps = 6/314 (1%) Query: 1 MRGQSIHKNTSPL---HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57 M G I T +++ LT + + + + + + Sbjct: 17 MSGGEIEVETDAGPEADGVIVYDLTNQDRIIRGRMPTLEIINDRFARLFRTTLSSALRKI 76 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 VD++ TS KF + S + + + LV L+E G + Sbjct: 77 VDMTTTSVDMVKFGEFMRSLPVPTSLHIFKMDPLRGHAIFVLESKLVFNLVETFFGGAGG 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 ++ R + +E++L ++ + + E + + + + Sbjct: 137 GNVKIEGRDFTAIEQQLTRKVVMLALKDMESAWKPVHEVT--MVYSRTEINPQFASIVPP 194 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTY 236 + V + + +E+ A + + IP T+ Q+ + + F ++ Sbjct: 195 TDVVIVVKFELEMEHTAGTVTVCIPYSTIEPIRTKLYAGFQSDQLEVDHEWMRRFRKQLR 254 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V + + T D++ LK+G V+ + G + G++ N Sbjct: 255 EAEVEFTVELGRTELTSGDLLQLKVGDVLQLDSDINGHLVAMVEGVPKFLGRPGQMRGNK 314 Query: 297 TIRITDRINFDQKS 310 R+ ++ + Sbjct: 315 AFRVEGFKDYGAEI 328 >gi|134095084|ref|YP_001100159.1| flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] gi|55977142|gb|AAV68363.1| FliM [Herminiimonas arsenicoxydans] gi|133738987|emb|CAL62035.1| Flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] Length = 332 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 93/306 (30%), Gaps = 11/306 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 P + R+ + + + L + ++S + Sbjct: 33 GVRPYNLATQERIVRG------RMPTLEIINERFSRLLRIGLFNFLHRSAEVSIGPVRVS 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K+S I + + + I NLV L++NL G ++ R + Sbjct: 87 KYSEFIRNLVVPTNLNLIHMKPLRGIGLIVLDPNLVFLLVDNLFGGDGRFHTRVEGRDFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + I + E + NE V + Sbjct: 147 QTEQRIIQRILGIIFETYAKSWEPVYPVE--FEYIRSEMNTQFANIATPNEVVVATTFTI 204 Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + V+ +P + + S Q ++ + I ++ V I + Sbjct: 205 ELGPVSGDLHFCVPYSMIEPIRDLLTSSMQGETLEMDKRWIRLMTQQIQTAEVEILANMG 264 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 K TL D++ +KIG +I +G + C G++ Y +R+ I Sbjct: 265 SAKVTLGDILNMKIGDIISIAVP--EQVTAEVDGVPVMECSYGKLNGQYALRVEKLIYSA 322 Query: 308 QKSLKN 313 + + Sbjct: 323 NDTTQG 328 >gi|329901244|ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] gi|327549176|gb|EGF33768.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] Length = 333 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 11/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P + R+ + + + L + ++S + Sbjct: 31 QSGVRPYNLATQERIVRG------RMPTLEIINERFARLLRIGLFNFLRRSAEVSIGPVR 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 K+S I + + + + NLV +++NL G ++ R Sbjct: 85 VSKYSEFIRNLVVPTNLNLVHMKPLRGTVLMVFDPNLVFLIVDNLFGGDGRFHTRVEGRD 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R +A + + E + NE V Sbjct: 145 FTQTEQRIIQRILAIVFENYAKSWEPVYPVE--FEYIRSEMNTQFANIATPNEVVICTTF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + + V+ IP T+ I S Q ++ + I ++ V I Sbjct: 203 TIELGPVSGEMHFCIPYSTIEPIRDILTSSLQGETLEVDKRWIRLMTQQIQTAEVEIIAD 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + ++ ++ +K+G +IP + +G + C G+ Y +R+ + Sbjct: 263 FGVARSNFGAILNMKVGDIIPLAVP--DVVLAKVDGVPVMECTYGKFNGQYALRVEKLLA 320 Query: 306 F 306 Sbjct: 321 Q 321 >gi|253998475|ref|YP_003050538.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4] gi|313200550|ref|YP_004039208.1| flagellar motor switch protein flim [Methylovorus sp. MP688] gi|253985154|gb|ACT50011.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4] gi|312439866|gb|ADQ83972.1| flagellar motor switch protein FliM [Methylovorus sp. MP688] Length = 334 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 92/300 (30%), Gaps = 11/300 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + + L M V++S + Sbjct: 33 GVREYNLATQERIVRG------RMPTLEIINERFARLLRIGLFNFMRRSVEVSVGPVRIS 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K+S + + + ++ + +LV ++++N+ G ++ R + Sbjct: 87 KYSEFVRNLVVPTNLNLVHMNPLRGTGLMVFDPSLVFSIVDNMFGGDGRFHTRIEGRDFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R +A + + + E + NE + ++ Sbjct: 147 QTEQRIIQRVLAIVIENYEKSWEPVYQVK--FEYLRSEMNTQFANIATPNEVIVATTFSI 204 Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + P + + S Q + + + ++ V + + Sbjct: 205 ELGPAGGEIHFCFPYSMIEPVRDLLTSSLQGEVLGVDKRWVRLMTQQIQAAEVELVANLA 264 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L DV+ +K+G VIP + + C+ G Y++R+ + + Sbjct: 265 KARMQLGDVLNMKVGDVIPLN--ISETIEAHVDNVPVMECKYGVFNGQYSLRVEKLLRAN 322 >gi|297538201|ref|YP_003673970.1| flagellar motor switch protein FliM [Methylotenera sp. 301] gi|297257548|gb|ADI29393.1| flagellar motor switch protein FliM [Methylotenera sp. 301] Length = 334 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 36/311 (11%), Positives = 95/311 (30%), Gaps = 12/311 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + + R+ + + + + + V++S Sbjct: 29 SNAGDVRDYNLATQERIVRG------RMPTLEIINERFARLVRIELFNFLRRTVEVSVGP 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S + + + + + LV +++N+ G ++ Sbjct: 83 VRITKYSDFVRNLVVPTNLNLIQMKPLRGTALMVFDPTLVFLVVDNMFGGDGRFHTRVEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R + + ++ E + NE V + Sbjct: 143 RDFTQTEQRIIQRILNIVFETYSKSWEPVYPVQ--FEYMRSEMNTQFANIATPNEVVIAV 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 N+ + + P L + S Q + + + ++ V I Sbjct: 201 TFNVELGPASGEIHFCFPYSMLEPLRDMLSSPLQGEVLGTDKRWVKLMTQQVQAAEVEIV 260 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + DV+ +K+G V+P + +G + C+ G Y +R+ Sbjct: 261 ADLAKTNMMIGDVLNMKVGDVVPLN--IEESIEAQVDGVPVMLCKYGMFNGQYALRVEKL 318 Query: 304 INFDQ-KSLKN 313 + + + +K Sbjct: 319 LRSNSTEYIKG 329 >gi|254491591|ref|ZP_05104770.1| flagellar motor switch protein FliM [Methylophaga thiooxidans DMS010] gi|224463069|gb|EEF79339.1| flagellar motor switch protein FliM [Methylophaga thiooxydans DMS010] Length = 340 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 86/300 (28%), Gaps = 11/300 (3%) Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70 R+ + + ++L + + +IS + Q KF Sbjct: 38 RDYDFGNEERIIRG------RMPTLEMINERFGRYLRISLFDMLRRSAEISVSGIQVMKF 91 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 S +H+ + L I LV T+L+N G ++ R + Sbjct: 92 SEYMHTLFVPTSLNLIHLHPLRGTGLIVLEPKLVFTILDNYFGGEGRFQARIEGREFTAT 151 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 E ++ + + L + S E + +E V ++ + Sbjct: 152 ELRVIRMVLNLCFTDLTEAWSPVMEVDFEFV--SHEVNPQFANIVSPSEVVVISTFHVEL 209 Query: 191 ENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + L P L + + Q+ + +V I ++ Sbjct: 210 DGGGGDIHLTFPYSMLEPIRELLDTGLQSDRTADDGRWSKAMREELMVADVEIWAKLAET 269 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 TL + LK G +IP + + ++ G + ++I + I + Sbjct: 270 SLTLAQIHKLKTGDIIPIQMPKN--VVAMVEDVPMFRASYGEHNEKAALKIAEVIEHPKD 327 >gi|257095345|ref|YP_003168986.1| flagellar motor switch protein FliM [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047869|gb|ACV37057.1| flagellar motor switch protein FliM [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 334 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P R+ + + ++L M +IS S + Sbjct: 32 DDGPRPYDLGTQERIVRG------RMPTLELVNERFARYLRIGLFNYMHRSTEISVGSIR 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 K+S + + + +LV +++N+ G ++ R Sbjct: 86 VQKYSEFTRNLVVPTNLNLINAKPLRGTALFVFDPSLVFLVVDNMFGGDGRFHTRVEGRD 145 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ K + + ++ + + E + +E V Sbjct: 146 FTATEQRIIKGLLGVVFTEYSRSWKPVYDLT--FEYVRSEMNSQFANIATPSEIVVATTF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ + + P + + + Q+ + + ++ V I R Sbjct: 204 SIEFGGSTADLHICFPYSMIEPIRDLLFSTMQSDQLSTDRRWVIMLRKQLTNAEVEITAR 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L+ ++ +K+G ++P I + + C G+ G Y I+I + Sbjct: 264 LATATVSLRQILEMKVGDIVPIDIP--EKVIAQVDDVPLMECRYGQQGGQYAIKIDHFMT 321 Query: 306 FD 307 + Sbjct: 322 IE 323 >gi|186477685|ref|YP_001859155.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815] gi|184194144|gb|ACC72109.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815] Length = 332 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 37/308 (12%), Positives = 93/308 (30%), Gaps = 11/308 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 QS P + R+ + + + L M +IS Sbjct: 29 QSDRAGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRTAEISVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K+S + + + NLV +++NL G ++ Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + + + + + E + + NE V Sbjct: 143 GREFTQTEQRIIHKLLNLVFEHYTAAWKSVRPL--SFEYTRSEMHTQFANVATPNEIVIV 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 ++ + + +P + + S Q ++ + +++ V + Sbjct: 201 TQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T ++++ +K G V+P +G + C G Y +R+ Sbjct: 261 TADLAQIPVTFQEILNMKAGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318 Query: 303 RINFDQKS 310 I+ ++ Sbjct: 319 MISAAEQM 326 >gi|90406812|ref|ZP_01215004.1| flagellar motor switch protein [Psychromonas sp. CNPT3] gi|90312049|gb|EAS40142.1| flagellar motor switch protein [Psychromonas sp. CNPT3] Length = 352 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 39/308 (12%), Positives = 97/308 (31%), Gaps = 11/308 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 G + + R+ + + + L + ++S Sbjct: 31 DGGAEDDSHIHFDFSSQDRIVRG------RMPTLELVNERFARHLRISLFNMLRHTAEVS 84 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 Q KF +H+ + + LV L+EN G + Sbjct: 85 INGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHAK 144 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ + + I + + + E E + Sbjct: 145 IEGREFTPTERRIIQMLLKIIFEDYKDAWAPV--MTADFEYLDSEVNPAMANIVSPTEVI 202 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240 + ++ ++ F + +P L + + Q+ E+ + + ++V Sbjct: 203 VVNSFHIELDGGGGDFHIAMPYSMLEPIRELLDAGVQSDKEDTDQRWSQALEDEIMDVDV 262 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + ++ K+ L+D++ +G +IP ++ G + +LG+ N ++I Sbjct: 263 YLTAKLLEKQLPLRDMINWSVGDIIPVELP--EELLVCVEGLPSFHAKLGKSNDNLALKI 320 Query: 301 TDRINFDQ 308 DRI + Sbjct: 321 IDRIKRPE 328 >gi|295399820|ref|ZP_06809801.1| flagellar motor switch protein FliM [Geobacillus thermoglucosidasius C56-YS93] gi|312111668|ref|YP_003989984.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1] gi|294978223|gb|EFG53820.1| flagellar motor switch protein FliM [Geobacillus thermoglucosidasius C56-YS93] gi|311216769|gb|ADP75373.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1] Length = 334 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 44/316 (13%), Positives = 106/316 (33%), Gaps = 13/316 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + + + L F ++ V I Sbjct: 29 LKKEETGKRVKVYDFKRALRF------SKDQIRSLTRIHENFARLLTTFFAAQLRTYVQI 82 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S S + I S + + + + + + + N+ +L+ ++G ++ Sbjct: 83 SVASADQIPYEEFIRSIPKMTFLNVFEVPPLNGHILMEVNPNIAYAMLDRVMGGKGTSVN 142 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ N L+ +E ++ + + L + E P DF + N+ Sbjct: 143 KIDN--LTEIETRIISNLFDKAFSNLRDAWESVAEIDPVFTDFEV--NPQFLQMISPNDT 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V I++N I + + IP L Q + + S + + R+ Sbjct: 199 VVVISLNTQIGETSGMMNICIPYVVLEPIIPKLSVHYWMQAQKKESSPEETEALERRIRF 258 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + I + T++D + L++G VI + ++ ++ + G+ K Sbjct: 259 AKLPIIAELGTATITIQDFLQLEVGDVIELDQSIQQPLLIKVGDIPKFTGQPGKRNKRLA 318 Query: 298 IRITDRINFDQKSLKN 313 ++I D + Sbjct: 319 VQILDTFKGAENYDDE 334 >gi|88813208|ref|ZP_01128448.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] gi|88789530|gb|EAR20657.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] Length = 336 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 S R+ + + + L + ++S + Sbjct: 35 GISAYEFQFQDRIVRG------RMPTLEMINERFARLLRTGLFNMLRKTAEVSVVGVELL 88 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KFS +H+ + + LV L++N G ++ R + Sbjct: 89 KFSEYVHTLYLPTSLNLVKVPPLRGTGLCVLDPKLVFILVDNFFGGDGRYFSKIEGREFT 148 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ ++ + Q A L + + E + +E V ++ Sbjct: 149 PTETRVIRKVLEQGFADLREAWNPVLPVD--FEFLNMEVNPQFANIVSPSEAVVVSRFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + + +P + + + Q+ + + + + V + R+ Sbjct: 207 ELNGGGGDLHITLPYTMIEPVRDVLSAGVQSDRNDVDQRWVRSLREEMKSAPVRLSCRLT 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + +L +++ L+ G +IP +L A + LG G N ++IT+ I Sbjct: 267 EARVSLHELMRLQPGDIIPIEMP--ETVVLRAAEVPVLRGRLGCSGGNVAVKITEPIRAP 324 Query: 308 Q 308 Q Sbjct: 325 Q 325 >gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] Length = 336 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 36/306 (11%), Positives = 99/306 (32%), Gaps = 11/306 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + P + R+ + + ++L M + ++S Sbjct: 29 EVEQGGVRPYNLATQERIVRG------RMPTMELINERFARYLRIGLFNYMHRNAEVSVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K++ + + + + NLV +++N+ G ++ Sbjct: 83 PIKVQKYAEFVRNLVVPTNLNLVLGKPLRGTGLVVFDPNLVFLVVDNMFGGDGRFHTRVE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + + + + + LE + +E V + Sbjct: 143 GRDFTPTEQRIIQGMLNVVFTEYAKAWAPVFKLE--LEYVRSEMNSQFANIATPSEIVVS 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242 + ++ + + + P + + S Q+ Q I +R+ V + Sbjct: 201 TSFSLELGGAQAEMHICFPYSMVEPIRDLLYSTMQSDHLTQDRRWITLLSRQLQTAEVEL 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + TL+D+V +++G VIP + +G + C G + ++ Sbjct: 261 TCNLGTARVTLRDIVNMRVGDVIPLQ--VSELLQATVDGVPVLECRYGTQNGQFAFKVDR 318 Query: 303 RINFDQ 308 + D+ Sbjct: 319 FLGPDE 324 >gi|300311368|ref|YP_003775460.1| flagellar motor switch protein FliM [Herbaspirillum seropedicae SmR1] gi|300074153|gb|ADJ63552.1| flagellar motor switch FliM protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 33/297 (11%), Positives = 84/297 (28%), Gaps = 11/297 (3%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 + R+ + + + + +IS + K Sbjct: 35 VRTYNLATQERIVRG------RMPTLEIINERFARLFRIGLFNFIHRTAEISVGPVKVSK 88 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 +S I + + + + + V L++N+ G ++ R + Sbjct: 89 YSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDPQFVFMLVDNMFGGDGRFHTRIEGREFTP 148 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E+++ R + + + NE V + + Sbjct: 149 TEQRIIMRVLEITFETYAKSWEPIYPIEFEFIRSEM--NTQFANIATPNEVVVSTTFTVE 206 Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + V+ + P + S Q ++ + I ++ V + Sbjct: 207 LGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALEVDKRWIRLMKQQIQTAEVELIVNFGT 266 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + D++ +++G VIP T +G + C G+ Y +R+ ++ Sbjct: 267 ARVNFTDLLHMQVGDVIPLQ--TNTTVEAQVDGVPVMECSYGQSNGQYALRVEKLLS 321 >gi|134294173|ref|YP_001117908.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4] gi|134137330|gb|ABO53073.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4] Length = 332 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 35/311 (11%), Positives = 88/311 (28%), Gaps = 11/311 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + Q P + R+ + + + L M +I Sbjct: 26 IDEQRDTSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + K+S + + + NLV +++NL G Sbjct: 80 SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ + + + + + + NE Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ + + +P + + S Q ++ + +++ Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMVEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + T + ++ L+ G V+P +G + C G Y +R Sbjct: 258 VELTADLAEIPATFEKILNLRAGDVLPLE--IDDTITAKVDGVPVMECGYGIFNGQYALR 315 Query: 300 ITDRINFDQKS 310 + I+ Sbjct: 316 VQKMISAGDTM 326 >gi|237653569|ref|YP_002889883.1| flagellar motor switch protein FliM [Thauera sp. MZ1T] gi|237624816|gb|ACR01506.1| flagellar motor switch protein FliM [Thauera sp. MZ1T] Length = 336 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 37/303 (12%), Positives = 97/303 (32%), Gaps = 11/303 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + P + R+ + + ++L M + ++S + Sbjct: 33 EGVRPYNLATQERIVRG------RMPTLELINERFARYLRIGLFNYMHRNAEVSAGPIKV 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 K++ + + + + + NLV +++N+ G ++ R Sbjct: 87 QKYAEFVRNLVVPTNLNLITAKPLRGTGLVVFDPNLVFLVVDNMFGGDGRFHTRVEGRDF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + + A + + P + +E V + +++ Sbjct: 147 TPTEQRIIRGMLDVVFAEYVRAWAPVFNLQPEFIRSEM--NSQFANIATPSEVVVSTSLS 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + + + P L + S Q+ I R+ V + Sbjct: 205 VEFGGSQAEMHICFPYSMLEPIRDLLYSSMQSDHLTSDRRWIKLLTRQLQTAEVELACSF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + +L+D+V +++G VIP + +G ++ C G Y +R+ I Sbjct: 265 GTARVSLRDIVDMRVGDVIPLAVQP--VLQAEVDGVPVFECRQGTRNGRYALRVERFITA 322 Query: 307 DQK 309 + Sbjct: 323 EDN 325 >gi|188592199|ref|YP_001796797.1| flim: flagellar motor switching and energizing component [Cupriavidus taiwanensis LMG 19424] gi|170938573|emb|CAP63560.1| FliM: flagellar motor switching and energizing component [Cupriavidus taiwanensis LMG 19424] Length = 339 Score = 255 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 10/302 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P + R+ + + + L + DIS S + Sbjct: 35 EGGVRPYNLATQERIIRG------RLHTLEIINERFARSLRTALFNFIRRGADISVGSVR 88 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + + L NLV +++NL G ++ R Sbjct: 89 IEKFGDFARNLPMPTNLNLVHLKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEGRD 148 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R + T E + K NE V T Sbjct: 149 FTQTEQRIIQRMLELTLTSYGNAWRTVHPIE--TEYIRSEMHPKFANVATHNEAVVTTAF 206 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 ++ + V + +P + + ++ + + + + + V + Sbjct: 207 HIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDEKEVDKGWVTQLSTQLRAAEVELVAEF 266 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++T+ +V+ ++ G V+P +G + C G + Y +R+ IN Sbjct: 267 AHLQSTVAEVLAMRAGDVLPIELP--EKVFGKVDGVPVMQCGFGTMNGQYALRVERMINH 324 Query: 307 DQ 308 Sbjct: 325 QD 326 >gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] Length = 357 Score = 255 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 41/310 (13%), Positives = 99/310 (31%), Gaps = 5/310 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 S + T + + + + + L M + ++S Sbjct: 22 EDDQFSGGEGATIYDFTSQDRIVRGRMPTLELVNERFARHLRISLFNMMRRNAEVSINGV 81 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 Q KF +H+ + I LV L++N G ++ R Sbjct: 82 QMVKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRFQAKIEGR 141 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ + + + + + + E E V + Sbjct: 142 EFTPTERRIIQLLLKTVFEDYKESWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVVSS 199 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ ++ F + +P + + + Q+ ++ + + V++ T Sbjct: 200 FHIELDGGGGDFHITLPYSMIEPIRELLDAGVQSDKQDTDMRWAKALQDEIMDVPVDLST 259 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + ++ TL+D++ +K G +IP ++ + +LGR G N +RI +RI Sbjct: 260 MLLEQELTLRDIMEMKAGDIIPVEMP--EHLLVRIEDLPTFRGKLGRKGDNVAVRIEERI 317 Query: 305 NFDQKSLKNF 314 + Sbjct: 318 PRPKSYKNEL 327 >gi|107021592|ref|YP_619919.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU 1054] gi|116688064|ref|YP_833687.1| flagellar motor switch protein FliM [Burkholderia cenocepacia HI2424] gi|170731414|ref|YP_001763361.1| flagellar motor switch protein FliM [Burkholderia cenocepacia MC0-3] gi|206561843|ref|YP_002232608.1| flagellar motor switch protein FliM [Burkholderia cenocepacia J2315] gi|254246641|ref|ZP_04939962.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184] gi|105891781|gb|ABF74946.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU 1054] gi|116646153|gb|ABK06794.1| flagellar motor switch protein FliM [Burkholderia cenocepacia HI2424] gi|124871417|gb|EAY63133.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184] gi|169814656|gb|ACA89239.1| flagellar motor switch protein FliM [Burkholderia cenocepacia MC0-3] gi|198037885|emb|CAR53829.1| flagellar motor switch protein FliM [Burkholderia cenocepacia J2315] Length = 332 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 35/311 (11%), Positives = 89/311 (28%), Gaps = 11/311 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + Q P + R+ + + + L M +I Sbjct: 26 VDEQRDTSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + K+S + + + NLV +++NL G Sbjct: 80 SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ + + + + + + NE Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ + + +P + + S Q ++ + +++ Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + +T + ++ L+ G V+P + +G + C G Y +R Sbjct: 258 VELTANLAEISSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALR 315 Query: 300 ITDRINFDQKS 310 + I Sbjct: 316 VQKMIGASDSM 326 >gi|254251031|ref|ZP_04944349.1| Flagellar motor switch protein [Burkholderia dolosa AUO158] gi|124893640|gb|EAY67520.1| Flagellar motor switch protein [Burkholderia dolosa AUO158] Length = 332 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 35/311 (11%), Positives = 88/311 (28%), Gaps = 11/311 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + Q P + R+ + + + L M +I Sbjct: 26 VDEQRDASGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + K+S + + + NLV +++NL G Sbjct: 80 SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ + + + + + + NE Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ + + +P + + S Q ++ + +++ Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + T + ++ L+ G V+P +G + C G Y +R Sbjct: 258 VELTADLAEIPVTFEKILNLRAGDVLPLEIP--DTITAKVDGVPVMECGYGIFNGQYALR 315 Query: 300 ITDRINFDQKS 310 + I+ Sbjct: 316 VQKMISAGDTM 326 >gi|309779462|ref|ZP_07674223.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA] gi|308921703|gb|EFP67339.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA] Length = 336 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 38/308 (12%), Positives = 97/308 (31%), Gaps = 7/308 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58 + + P + ++ + + + + M + Sbjct: 19 VSDDADDDPVEAADPSGIRSYNLGSQERIVRGRMPTLEIINERFARNWRIGLFNFMRRNA 78 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + K+S I + + + NL+ +++NL G Sbjct: 79 EISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFGGDGRF 138 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R + VE+++ +R + + + + N Sbjct: 139 HMRVEGRDFTDVEQRIIQRMLHLVFEHYAKAWQPVYPIDFEFLRMEMHT--EFANVATPN 196 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V T + ++ + + + +P + S+ Q ++ + + +++ Sbjct: 197 EVVITTSFSIELGSNGGDVHICMPYTMIEPIRDRLTSAIQGEALEVDKRWLRLLSQQVQT 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + K + D++ +K+G VIP C +G + C G Y Sbjct: 257 AEVELIADLATAKVQVSDILNMKVGDVIPLEL--DDCVTAKVDGVPVMECNYGTFNGQYA 314 Query: 298 IRITDRIN 305 +R+ +N Sbjct: 315 LRVNRMLN 322 >gi|114332022|ref|YP_748244.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91] gi|114309036|gb|ABI60279.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91] Length = 330 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 90/301 (29%), Gaps = 11/301 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 G + P R+ + + L + VDIS Sbjct: 31 NGVTYPGGIRPYDMATQERIVRG------RMPALEIINARFANSLQIGLYNFLRRGVDIS 84 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 S ++ K+S S + S+ I NL+ +++N+ G + Sbjct: 85 AGSIKTIKYSEFTRSLVVPANINMVSMKPLRGTALITIDPNLIFLIVDNMFGGDGRFHTR 144 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+ + +R + + + + E + + V Sbjct: 145 VEGREFTLTEQGIIRRLLDVLFENYEKAWKSVYPV--RFEYIRAEMNPQFANIATPTDVV 202 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNV 240 + + + F + P L + S Q + I R+ + Sbjct: 203 VASSFELNLGGNRGEFYICTPYTMLEPIRDLLNNSMQEDHAEVDNNWIKSLTRQVQGAEI 262 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I + + TL ++ ++ G VI + ANG I C G + +Y +++ Sbjct: 263 EIIANLGHTRVTLHQILNMQEGDVIALDIP--DTVVAMANGVPIMDCHYGILNDHYALKV 320 Query: 301 T 301 Sbjct: 321 K 321 >gi|30248480|ref|NP_840550.1| flagellar motor switch protein FliM [Nitrosomonas europaea ATCC 19718] gi|30138366|emb|CAD84375.1| Flagellar motor switch protein FliM [Nitrosomonas europaea ATCC 19718] Length = 330 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 P + R+ + + L + VDIS S ++ Sbjct: 38 GVRPYNMATQERIVRG------RMPALEIINARFANSLQIGLYNFLRRGVDISAGSIKTI 91 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K+S S + S+ NL+ +++N+ G ++ R + Sbjct: 92 KYSEFTRSLVVPANINLVSMKPLRGTALFTIDPNLIFLIVDNMFGGDGRFHTRVEGREFT 151 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+ + +R + + + + E + + V + Sbjct: 152 LTEQGIIRRLLDVLFEHYEKAWQSVYPVK--FEYIRAEMNPQFANIVTPTDIVVASAFEL 209 Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + F IP L + S Q ++ I R+ + I + Sbjct: 210 NLGGNRGEFYTCIPYTMLEPIRDLLNNSMQEDRAEVDKNWIKSLTRQVQGAEIEIIANLG 269 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + TL ++ ++ G VI + AN I C G + +Y +++ + + Sbjct: 270 QTQVTLHQILNMQEGDVIALDIP--DTVVAIANNVPIMDCHYGILNGHYALKVKTVRSPN 327 Query: 308 Q 308 + Sbjct: 328 E 328 >gi|85859177|ref|YP_461379.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] gi|85722268|gb|ABC77211.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] Length = 333 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 10/301 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + V ++ S KF Sbjct: 38 YDLASQDRIIRG------RMPTLEMTNEKFARMFRTTLSSMLRKVVAVNSMSVDMIKFGE 91 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 + + + N + ++ TL++ L G + + + ++ R + +E Sbjct: 92 FLKTLPVPTSLHIFRMEPLRGNAIFVMESKVIFTLVDVLFGGAGKELFKVEGREFTAIET 151 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L K+ I + L + T + + + + V ++ + +E Sbjct: 152 NLIKKVILSALSDLEKAWKTMHDI--RVIYQRSEINPQFAQIVPPTDLVFVVDFEIEVEY 209 Query: 193 VASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L IP T+ + Q++ + + F +++I + Sbjct: 210 ITGILKLCIPYSTVEPIREKLQAGFQSEQLEVDKVWMKRFRDNLMLAHLDILIELGSTLI 269 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + KDVV LK G VI + G + G N +RI++ + D++ + Sbjct: 270 SAKDVVNLKPGDVITLDQYCTDPVNIFVEGMMKFKGYPGTYKGNQAVRISEIV-QDKEVM 328 Query: 312 K 312 Sbjct: 329 D 329 >gi|239826624|ref|YP_002949248.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70] gi|239806917|gb|ACS23982.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70] Length = 334 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 101/289 (34%), Gaps = 7/289 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V IS S + I S + + Sbjct: 50 SKDQIRSLTRIHENFARLLTTFFAAQLRTYVQISVASADQIPYEEFIRSIPKMTFLNVFE 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + I + N+ +L+ ++G +I ++ N L+ +E ++ + + L Sbjct: 110 VPPLNGHILIEVNPNIAYAMLDRVMGGRGTSINKVDN--LTEIETRIMSNLFDKAFSNLR 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P DF + N+ V I++N + + + IP L Sbjct: 168 DAWESIAEIDPIFTDFEV--NPQFLQVISPNDTVVVISLNTKVGETSGMINICIPHVVLE 225 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q + + S + + R+ + I + T+++ + L++G V Sbjct: 226 PIIPKLSVHYWMQAQKKESSPEETEAIERRIRFAKLPIIAELGTATITIQEFLQLEVGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I + ++ + + G+ K ++I D ++ Sbjct: 286 IELDQSIQQPLLIKVGDIPKFIGQPGKRNKRLAVQILDAFKGEEDYNDE 334 >gi|91785619|ref|YP_560825.1| flagellar motor switch protein FliM [Burkholderia xenovorans LB400] gi|296157439|ref|ZP_06840274.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1] gi|91689573|gb|ABE32773.1| Flagellar motor switch protein FliM [Burkholderia xenovorans LB400] gi|295892211|gb|EFG71994.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1] Length = 332 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 36/308 (11%), Positives = 87/308 (28%), Gaps = 11/308 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 QS P + R+ + + + L M +IS Sbjct: 29 QSDRAGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K+S + + + NLV +++NL G ++ Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + + + + + NE V Sbjct: 143 GRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIVIV 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 ++ + + +P + I S Q ++ + +++ V + Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T + ++ ++ G V+P +G + C G Y +R+ Sbjct: 261 TADLAKVPVTFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318 Query: 303 RINFDQKS 310 I+ Sbjct: 319 MISAADTM 326 >gi|172059107|ref|YP_001806759.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6] gi|171991624|gb|ACB62543.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6] Length = 332 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 88/304 (28%), Gaps = 11/304 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 P + R+ + + + L M +IS + + Sbjct: 33 SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 K+S + + + NLV +++NL G ++ R Sbjct: 87 QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + + + + + NE V + Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + + + +P + + S Q ++ + +++ V + + Sbjct: 205 IEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +T + ++ L+ G V+P + +G + C G Y +R+ I+ Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322 Query: 307 DQKS 310 Sbjct: 323 SDTM 326 >gi|255021379|ref|ZP_05293427.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] gi|254969242|gb|EET26756.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] Length = 337 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 91/302 (30%), Gaps = 11/302 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P R+ + + + +IS + Sbjct: 35 SVQPYDLANQDRIVRG------RMPTLEVVNERLARLWRVSLFNFLRRSAEISVGPVRLV 88 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K+S I S + + + L+ +++N G ++ R + Sbjct: 89 KYSEFIRSLMVPSNINIVQVKPLRGSALFVFDARLIFAVVDNYFGGDGRFHARIEGREFT 148 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E+++ KR + + S + P L + + E V N+ Sbjct: 149 PLEQRIIKRLLDLVFKDFKSAWSPVIDLQPELSRSEV--NPQFVSIATPTEVVIVSTFNI 206 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQN-KSENQSEDLIDPFARKTYQLNVNIDTRIN 247 +E+ SF + +P + + + + + + + + Sbjct: 207 ELESGTGSFQICLPYGMVEPVRDQLTAGTTADRSEIDKRWVQSLHDELREATLELRVEFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +++ ++ L++G VIP + +G ++ G G Y I+ + + + Sbjct: 267 RLPISVRQLLALRVGDVIPLERP--ETLVARVDGIPVFRGPYGVHGGKYAIQFHEALPPE 324 Query: 308 QK 309 + Sbjct: 325 TE 326 >gi|115350088|ref|YP_771927.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD] gi|115280076|gb|ABI85593.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD] Length = 332 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 89/304 (29%), Gaps = 11/304 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + P + R+ + + + L M +IS + + Sbjct: 33 SSVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 K+S + + + NLV +++NL G ++ R Sbjct: 87 QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + + + + + NE V + Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + + + +P + + S Q ++ + +++ V + + Sbjct: 205 IEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +T + ++ L+ G V+P + +G + C G Y +R+ I+ Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322 Query: 307 DQKS 310 Sbjct: 323 SDTM 326 >gi|78064701|ref|YP_367470.1| flagellar motor switch protein FliM [Burkholderia sp. 383] gi|77965446|gb|ABB06826.1| Flagellar motor switch protein FliM [Burkholderia sp. 383] Length = 332 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 34/311 (10%), Positives = 89/311 (28%), Gaps = 11/311 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + Q P + R+ + + + L M +I Sbjct: 26 VDEQRDTSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + K+S + + + NLV +++NL G Sbjct: 80 SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ + + + + + + NE Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ + + +P + + S Q ++ + +++ Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + + ++ L+ G V+P + +G + C G Y +R Sbjct: 258 VELTANLAEISSNFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALR 315 Query: 300 ITDRINFDQKS 310 + I+ Sbjct: 316 VQKMISAGDSM 326 >gi|319649555|ref|ZP_08003711.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2] gi|317398717|gb|EFV79399.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2] Length = 332 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 109/312 (34%), Gaps = 13/312 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + + + L F ++ V I Sbjct: 28 LKKEQTEKKVKVYDFKRALRF------SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQI 81 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S S + I S + + + + + + N+ +++ L+G +I Sbjct: 82 SVASADQIPYEEFIRSIPKMTILNVIEVPPLDGRILMEVNPNVAYAMMDRLMGGRGTSIN 141 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ N L+ +E K+ T + L + ST + P L DF + NE Sbjct: 142 KVDN--LTEIETKIMSATFERAFENLREAWSTIADIDPLLADFEV--NPQFLQMVSPNET 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V I++N TI + + IP L Q + + ++I R ++ Sbjct: 198 VVVISLNTTIGETSGMINICIPHVVLEPIIPKLSVHYWMQTDKKEREPEVIARLERNIHK 257 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + ++D ++L IG VI I+ + + G++ K Sbjct: 258 AEVPVICELGSSDIAIQDFLSLDIGDVIELNQGIDQALIIKVGNIPKFIGQPGKMNKKMA 317 Query: 298 IRITDRINFDQK 309 ++I D + + Sbjct: 318 VQILDTVKGGDE 329 >gi|170698080|ref|ZP_02889161.1| flagellar motor switch protein FliM [Burkholderia ambifaria IOP40-10] gi|170137041|gb|EDT05288.1| flagellar motor switch protein FliM [Burkholderia ambifaria IOP40-10] Length = 332 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 88/304 (28%), Gaps = 11/304 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 P + R+ + + + L M +IS + + Sbjct: 33 SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 K+S + + + NLV +++NL G ++ R Sbjct: 87 QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + + + + + NE V + Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + + + +P + + S Q ++ + +++ V + + Sbjct: 205 IEFGPTGGTLHICMPYSMVEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +T + ++ L+ G V+P + +G + C G Y +R+ I+ Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322 Query: 307 DQKS 310 Sbjct: 323 SDTM 326 >gi|171316890|ref|ZP_02906099.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5] gi|171097971|gb|EDT42789.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5] Length = 332 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 88/304 (28%), Gaps = 11/304 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 P + R+ + + + L M +IS + + Sbjct: 33 SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 K+S + + + NLV +++NL G ++ R Sbjct: 87 QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + + + + + NE V + Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + + + +P + + S Q ++ + +++ V + + Sbjct: 205 IEFGPTGGTLHICMPYSMVEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +T + ++ L+ G V+P + +G + C G Y +R+ I+ Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322 Query: 307 DQKS 310 Sbjct: 323 SDTM 326 >gi|167585018|ref|ZP_02377406.1| flagellar motor switch protein FliM [Burkholderia ubonensis Bu] Length = 332 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 34/303 (11%), Positives = 88/303 (29%), Gaps = 11/303 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 P + R+ + + + L M +IS + + Sbjct: 34 GIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKVQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K+S + + + NLV +++NL G ++ R + Sbjct: 88 KYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + + + + + NE V ++ Sbjct: 148 ATEQRIIGKMLNLVFEHYTTAWKSVRPLQFEYVRSEMHT--QFANVATPNEIVIVTQFSI 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + + +P + + S Q ++ + +++ V + + Sbjct: 206 EFGPTGGTLHICMPYSMVEPIRDVLASPIQGEALEVDRRWVRVLSQQVQTAEVEVTANLA 265 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 T + ++ L+ G V+P + +G + C G Y +R+ I+ + Sbjct: 266 EIPVTFEQILNLRAGDVLPLA--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISAN 323 Query: 308 QKS 310 Sbjct: 324 DTM 326 >gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 337 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 16/302 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + + E E+ Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ +E + +P L + + Q+ ++ + + Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + K+ TL+ + LK+G V+P + L +++ E G N ++ Sbjct: 258 VTLSSVLASKRMTLRQLTGLKVGDVLPIELPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315 Query: 300 IT 301 IT Sbjct: 316 IT 317 >gi|325928696|ref|ZP_08189868.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118] gi|325540928|gb|EGD12498.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118] Length = 337 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + + E E+ Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ +E + +P L + + Q+ ++ + + Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + K+ +L+ + LK+G ++P + L +++ E G N ++ Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315 Query: 300 IT 301 IT Sbjct: 316 IT 317 >gi|289208344|ref|YP_003460410.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix] gi|288943975|gb|ADC71674.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix] Length = 324 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 32/299 (10%), Positives = 86/299 (28%), Gaps = 11/299 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + R+ + + + L + ++S + Sbjct: 33 DGEAREFNFATQDRIVRG------RMPTLEMINERFARHLRVRLFNMLRRSAELSVVGTR 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KFS +HS + LV L++N G ++ R Sbjct: 87 VSKFSEYMHSLFVPTSLNLVRAHPLHGTGLFVFDPKLVFILVDNFFGGDGRYHTRIEGRD 146 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E ++ + + + + E + E V Sbjct: 147 FTPMEMRVVHGILEGAFEDMVKAWQPVMDL--RFEFLNSEVNPQFANIVSPTEIVVISEF 204 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ ++ + +P + + Q+ + + + + V + + Sbjct: 205 HIELDGGGGNLHFTLPYSMIEPIREQLDTGLQSDRSDVDQRWMKALEEEIQDAEVEVSST 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + T+++++ ++ G +IP L ++ + G I++TDRI Sbjct: 265 LTETEVTVQELLDIQPGDIIPINLP--ETVTLKVEDIPLFRGKFGVSDGKNAIQVTDRI 321 >gi|21242691|ref|NP_642273.1| flagellar motor switch protein FliM [Xanthomonas axonopodis pv. citri str. 306] gi|294664066|ref|ZP_06729468.1| flagellar motor switch protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21108164|gb|AAM36809.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|292606169|gb|EFF49418.1| flagellar motor switch protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 337 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + + E E+ Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ +E + +P L + + Q+ ++ + + Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + K+ +L+ + LK+G ++P + L +++ E G N ++ Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315 Query: 300 IT 301 IT Sbjct: 316 IT 317 >gi|209695733|ref|YP_002263663.1| flagellar motor switch protein FliM [Aliivibrio salmonicida LFI1238] gi|208009686|emb|CAQ79985.1| polar flagellar switch protein FliM (flagellar motor switch protein FliM) [Aliivibrio salmonicida LFI1238] Length = 343 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 32/297 (10%), Positives = 87/297 (29%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + ++S KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVSMVKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + + LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + + S E E + + ++ ++ Sbjct: 151 RIIQLLLKVVFEDYKEAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F ++ P + + + Q+ + + + V + + + Sbjct: 209 GGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESEI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +L+D++ L+ G +IP A + Y ++G+ G ++IT++I Sbjct: 269 SLRDLMDLQAGDIIPIEMP--EAATVFVEDLPTYRGKVGKSGDKLAVQITEKIKRPD 323 >gi|212639555|ref|YP_002316075.1| flagellar motor switch protein FliM [Anoxybacillus flavithermus WK1] gi|212561035|gb|ACJ34090.1| Flagellar motor switch protein FliM [Anoxybacillus flavithermus WK1] Length = 335 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 104/284 (36%), Gaps = 7/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V IS S + I S + + + Sbjct: 52 SKDQIRSLTRMHENFARLLTTFFSAQLRTYVQISVASADQLPYEEFIRSIPKMTILTVFE 111 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + N+ +L+ +LG ++ ++ N L+ +E K+ + + L Sbjct: 112 VPPLDGRVLLEVNPNIAYAMLDRVLGGRGVSLNKIEN--LTEIETKIMSNLFEKAFSNLR 169 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P L DF + NE V I++N I + + + IP L Sbjct: 170 EAWESVADIDPMLTDFEV--NPQFLQMVSPNETVVVISLNTQIGDTSGMINICIPHVVLE 227 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q + + + + + ++ Q V + + ++++ + L +G V Sbjct: 228 PIIPKLSVHYWMQTQKKAREPEEVATLQKRLKQTKVPMIAELGTSTISIQEFLQLSVGDV 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 I + ++ + + G++ K I+I D I + Sbjct: 288 IQLDQTVRDPLVIKVGDVPKFIGQPGKMNKRLAIQILDVIKGED 331 >gi|209522293|ref|ZP_03270920.1| flagellar motor switch protein FliM [Burkholderia sp. H160] gi|209497269|gb|EDZ97497.1| flagellar motor switch protein FliM [Burkholderia sp. H160] Length = 332 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 36/310 (11%), Positives = 88/310 (28%), Gaps = 11/310 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 QS P + R+ + + + L M +IS Sbjct: 27 SEQSDRSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + K+S + + + NLV +++NL G + Sbjct: 81 VGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTR 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ + + + + + NE V Sbjct: 141 VEGRDFTQTEQRIIMKLLNLTFEHYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIV 198 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240 ++ + + + +P + I S Q ++ + + +++ V Sbjct: 199 IVTQFSIEFGSTGGTLHICMPYSMIEPIRDILSSPIQGEAMDVDRRWVRVLSQQVQAAEV 258 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T + ++ ++ G V+P +G + C G Y +R+ Sbjct: 259 QLTADLAQVPVTFEQILNMRKGDVLPINIP--ERITAKVDGVPVMECGYGIFNGQYALRV 316 Query: 301 TDRINFDQKS 310 I+ Sbjct: 317 QKMISAADTM 326 >gi|53717666|ref|YP_106652.1| flagellar motor switch protein FliM [Burkholderia pseudomallei K96243] gi|76811753|ref|YP_331656.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710b] gi|126441392|ref|YP_001057084.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668] gi|126453439|ref|YP_001064314.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106a] gi|134281495|ref|ZP_01768203.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305] gi|167717395|ref|ZP_02400631.1| flagellar motor switch protein FliM [Burkholderia pseudomallei DM98] gi|167736438|ref|ZP_02409212.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 14] gi|167813512|ref|ZP_02445192.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 91] gi|167822054|ref|ZP_02453525.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 9] gi|167843667|ref|ZP_02469175.1| flagellar motor switch protein FliM [Burkholderia pseudomallei B7210] gi|167892138|ref|ZP_02479540.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 7894] gi|167900650|ref|ZP_02487855.1| flagellar motor switch protein FliM [Burkholderia pseudomallei NCTC 13177] gi|167908870|ref|ZP_02495961.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 112] gi|167916909|ref|ZP_02504000.1| flagellar motor switch protein FliM [Burkholderia pseudomallei BCC215] gi|217424100|ref|ZP_03455600.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576] gi|226193119|ref|ZP_03788729.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pakistan 9] gi|237814422|ref|YP_002898873.1| flagellar motor switch protein FliM [Burkholderia pseudomallei MSHR346] gi|242315986|ref|ZP_04815002.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106b] gi|254184092|ref|ZP_04890683.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1655] gi|254186558|ref|ZP_04893075.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pasteur 52237] gi|254194648|ref|ZP_04901079.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13] gi|254258129|ref|ZP_04949183.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710a] gi|254298640|ref|ZP_04966091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 406e] gi|52208080|emb|CAH34010.1| flagellar motor switch protein FliM [Burkholderia pseudomallei K96243] gi|76581206|gb|ABA50681.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710b] gi|126220885|gb|ABN84391.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668] gi|126227081|gb|ABN90621.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106a] gi|134247162|gb|EBA47248.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305] gi|157808681|gb|EDO85851.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 406e] gi|157934243|gb|EDO89913.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pasteur 52237] gi|169651398|gb|EDS84091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13] gi|184214624|gb|EDU11667.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1655] gi|217393163|gb|EEC33185.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576] gi|225934719|gb|EEH30696.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pakistan 9] gi|237504112|gb|ACQ96430.1| flagellar motor switch protein FliM [Burkholderia pseudomallei MSHR346] gi|242139225|gb|EES25627.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106b] gi|254216818|gb|EET06202.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710a] Length = 332 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 35/307 (11%), Positives = 88/307 (28%), Gaps = 11/307 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P + R+ + + + L M +IS + Sbjct: 30 AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S + + + NLV +++NL G ++ Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + + + + + NE V Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 ++ + + +P + + S Q ++ + +++ V + Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + TT + ++ L+ G V+P +G + C G Y +R+ Sbjct: 262 ADLAEVPTTFEKILNLRTGDVLPLDIT--DSITAKVDGVPVMECGYGIFNGQYALRVQRM 319 Query: 304 INFDQKS 310 I+ Sbjct: 320 ISASDTM 326 >gi|315127312|ref|YP_004069315.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913] gi|315015826|gb|ADT69164.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913] Length = 363 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 41/314 (13%), Positives = 97/314 (30%), Gaps = 11/314 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 G+ +T R+ + + + + M ++S Sbjct: 27 DGEDGEGSTLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 Q KF IH+ + I LV L++N G + Sbjct: 81 INGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAK 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ + + I + + + + E E V Sbjct: 141 IEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVV 198 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240 + ++ ++ F + +P L + + Q+ +E+ + + V Sbjct: 199 VISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEV 258 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ T++ +LK ++ LK G +IP + + ++GR N ++I Sbjct: 259 DLSTQLLEVDLSLKQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDNVALQI 316 Query: 301 TDRINFDQKSLKNF 314 +++I Sbjct: 317 SEKIKRPDSVKSEL 330 >gi|78047547|ref|YP_363722.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035977|emb|CAJ23668.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 337 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + + E E+ Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ +E + +P L + + Q+ ++ + + Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + K+ +L+ + LK+G ++P + L +++ E G N ++ Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315 Query: 300 IT 301 IT Sbjct: 316 IT 317 >gi|307731349|ref|YP_003908573.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003] gi|307585884|gb|ADN59282.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003] Length = 332 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 36/308 (11%), Positives = 87/308 (28%), Gaps = 11/308 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 QS P + R+ + + + L M +IS Sbjct: 29 QSERVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K+S + + + NLV +++NL G ++ Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + + + + + NE V Sbjct: 143 GREFTQTEQRIISKLLNLVFEHYAASWKSVRPLQFEYMRSEMHT--QFANVATPNEIVIV 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 ++ + + +P + I S Q ++ + +++ V + Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQSAEVEL 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T + ++ ++ G V+P +G + C G Y +R+ Sbjct: 261 TADLAQVPITFEQILNMRKGDVLPINIP--EQITAKVDGVPVMECGYGIFNGQYALRVQR 318 Query: 303 RINFDQKS 310 I+ Sbjct: 319 MISAADTM 326 >gi|56460301|ref|YP_155582.1| flagellar motor switch protein FliM [Idiomarina loihiensis L2TR] gi|56179311|gb|AAV82033.1| Flagellar motor switch protein [Idiomarina loihiensis L2TR] Length = 356 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 36/306 (11%), Positives = 96/306 (31%), Gaps = 11/306 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 +S + R+ + + + + M ++S Sbjct: 30 ESASADALDYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRTAEVSIN 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 Q KF +H+ + I LV L++N G ++ Sbjct: 84 GVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVDNFFGGDGRYHAKIE 143 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + + + + + E E + Sbjct: 144 GREFTPTERRIIQMLLKLVFEDYKEAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIVI 201 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 + ++ ++ F + +P L + + Q+ E+ + + V + Sbjct: 202 SSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTDMRWSKALRDEIMDVPVEM 261 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ + +L++V+ L+ G VIP + + + ++GR N ++I++ Sbjct: 262 IAKLAQTEMSLREVMDLREGDVIPLELPDD--LTVLIEDLPTFHAKMGRSRDNVALKISE 319 Query: 303 RINFDQ 308 +I + Sbjct: 320 KIKRPE 325 >gi|187925747|ref|YP_001897389.1| flagellar motor switch protein FliM [Burkholderia phytofirmans PsJN] gi|187716941|gb|ACD18165.1| flagellar motor switch protein FliM [Burkholderia phytofirmans PsJN] Length = 332 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 36/308 (11%), Positives = 88/308 (28%), Gaps = 11/308 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 QS P + R+ + + + L M +IS Sbjct: 29 QSDRVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K+S + + + NLV +++NL G ++ Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + + + + + NE V Sbjct: 143 GRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIVIV 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 ++ + + +P + I S Q ++ + +++ V + Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T + ++ ++ G V+P +G + C G Y +R+ Sbjct: 261 TADLAQVPVTFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318 Query: 303 RINFDQKS 310 I+ + Sbjct: 319 MISAAETM 326 >gi|289666107|ref|ZP_06487688.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 337 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 16/302 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + + E E+ Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ +E + +P L + + Q+ ++ + + Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + K+ TL+ + LK+G V+P + L +++ E G N ++ Sbjct: 258 VTLSSVLASKRMTLRQLTGLKVGDVLPIELPAQVP--LCVEDIPLFTGEFGISNGNNAVK 315 Query: 300 IT 301 IT Sbjct: 316 IT 317 >gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis TAC125] gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing [Pseudoalteromonas haloplanktis TAC125] Length = 363 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 96/313 (30%), Gaps = 11/313 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G+ NT R+ + + + + M ++S Sbjct: 28 GEDGEGNTLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVSI 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF +H+ + I LV L++N G ++ Sbjct: 82 NGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKI 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ + + I + + + + E E V Sbjct: 142 EGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVV 199 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241 + ++ ++ F + +P L + + Q+ +E+ + + V Sbjct: 200 ISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEVE 259 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++ TLK ++ LK G +IP + + ++GR + ++I+ Sbjct: 260 LSTQLLEVDLTLKQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDSVALQIS 317 Query: 302 DRINFDQKSLKNF 314 ++I Sbjct: 318 EKIKRPDSVKSEL 330 >gi|88858101|ref|ZP_01132743.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] gi|88819718|gb|EAR29531.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] Length = 364 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 94/300 (31%), Gaps = 11/300 (3%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 S R+ + + + + M ++S Q K Sbjct: 36 ASQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVSINGVQMIK 89 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 F IH+ + I LV L++N G ++ R + Sbjct: 90 FGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGREFTP 149 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E+++ + + I + + + + E E V + ++ Sbjct: 150 TERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSFHIE 207 Query: 190 IENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 ++ F + +P L + + Q+ +E+ + + V + TR+ Sbjct: 208 LDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEVGLSTRMLE 267 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 K +L+ ++ L+ G VIP + + ++GR N ++I+++I Sbjct: 268 VKLSLEQIMNLQAGDVIPVEMP--EHITVFIEDLPTFRAKMGRSRDNVALQISEKIKRPD 325 >gi|89098632|ref|ZP_01171514.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911] gi|89086594|gb|EAR65713.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911] Length = 332 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 101/311 (32%), Gaps = 13/311 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + + + L F ++ V I Sbjct: 28 LKKEQSEKKVKVYDFKRALRF------SKDQVRSLTRIHENFARLLTTFFSAQLRTYVQI 81 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S S + I S + + + + + + N+ +++ ++G +I Sbjct: 82 SVASADQIPYEEFIRSIPKMTILNVFEVPPLDGRILMEVNPNIAYAMMDRMMGGRGSSIN 141 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ L+ +E K+ T + L + ST E P L + NE Sbjct: 142 KVDT--LTEIETKIMSNTFERAFEHLREAWSTITEIDPFL--AEFEINPQFLQMVSPNET 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V I++N I + + IP L Q + + + + + + Sbjct: 198 VVVISLNTMIGETSGMINICIPHVVLEPIIPKLSVHYWMQTEKKEREPEELGRLEDSIQK 257 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + +++D + L +G VI + ++ + G+ K Sbjct: 258 AQVPVSAELGSADISIQDFLMLDLGDVIELNQAIDRPLTIKIGDIPKFTGQPGKANKKLA 317 Query: 298 IRITDRINFDQ 308 I+I D + Sbjct: 318 IQILDTLKGGD 328 >gi|296133037|ref|YP_003640284.1| flagellar motor switch protein FliM [Thermincola sp. JR] gi|296031615|gb|ADG82383.1| flagellar motor switch protein FliM [Thermincola potens JR] Length = 333 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 98/285 (34%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K ++ + + L + V ++ S + + I S + + Sbjct: 50 SKEQIHTLQAIHENFARLLATFLSAHLRTVVTMNVHSVEQITYDEFIRSLPNPTLLNIFM 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + N + + N+ T+L+ L G + ++ R L+ +E+ + ++ I + +L Sbjct: 110 MEPLAGNAILEVNPNVTFTILDRLFGGPGQAPEKM--RGLTDIERTVIEKVIIRCLQILK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + P LE E V I+++ TI + L IP L Sbjct: 168 EAWENIIVFDPKLEIIET--NPMFTQIVSPTEMVVLISIHATIGDNEGIMNLCIPFIVLE 225 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 ++ + + I R+ + + + + L +++ L+ G V Sbjct: 226 PIISKLTAHFWFAGTAKTVTAEHIQNTQRRLEKAKITLSAVLGETTIKLGELLELQPGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I +R + ++ + G VG ++IT + + Sbjct: 286 IQLDNRTTDELKILVGDRKKFYGRPGTVGSRLAVQITRLVKEGDE 330 >gi|319787093|ref|YP_004146568.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis 11-1] gi|317465605|gb|ADV27337.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis 11-1] Length = 339 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 86/301 (28%), Gaps = 11/301 (3%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 P R+ + + + + DIS K Sbjct: 36 ARPYDFASQDRIIRG------RMPTLEMVNERFARLWRIGLFNLIRRSADISVRGIDMIK 89 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 F +HS + + LV +++N G ++ R + Sbjct: 90 FGEYMHSLYVPTNLNLVRFKPLRGMGLVVFEPKLVFAVVDNFFGGDGRYPTRIEGREFTV 149 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E ++ + + Q A L + + + E E+V ++ Sbjct: 150 TEMRVIQLMLRQTFADLVEAWAPVMDVE--FEYINSEINPHFANIVTPREYVVVSRFHVE 207 Query: 190 IENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 ++ + +P L + + Q+ ++ E + V + + + Sbjct: 208 LDGGGGEIHVTLPYSMLEPIRELLDAGIQSDRIDRDESWNTTLREQLQLAEVTVSSVLAQ 267 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 K+ L+ + LK+G ++P + +++ + G ++IT Sbjct: 268 KRIDLRQLTRLKVGDILPIDLST--TVPVCVENIPVFTGQFGVSNGCNAVKITRTHPPGS 325 Query: 309 K 309 + Sbjct: 326 E 326 >gi|73539704|ref|YP_300071.1| flagellar motor switch protein FliM [Ralstonia eutropha JMP134] gi|72123041|gb|AAZ65227.1| Flagellar motor switch protein FliM [Ralstonia eutropha JMP134] Length = 337 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 10/302 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P + R+ + + + L + DI+ S + Sbjct: 36 EGGVRPYNLATQERVIRG------RLHTLEIINERFARSLRTALFNFIRRGADITVGSVR 89 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + + + NLV +++NL G ++ R Sbjct: 90 IEKFGDFARNLPMPTNLNLVHMKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEGRD 149 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R + T K NE V T Sbjct: 150 FTQTEQRIIQRMLEMTLTSYGNAWRTVYPIETEYVRSEMHT--KFANVATVNEAVITTAF 207 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 ++ + V + +P + + ++ + + + + + +V + Sbjct: 208 HIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDEKEVDKSWLAKLSTQLRAADVEVVAEF 267 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++T+ +V+ L+ G V+P NG + C G + Y +R+ IN Sbjct: 268 THVQSTVAEVLALRAGDVLPIELP--EHVFGKVNGVPVMQCGFGTINGQYALRVERMINH 325 Query: 307 DQ 308 Sbjct: 326 QD 327 >gi|116694517|ref|YP_728728.1| flagellar motor switch protein [Ralstonia eutropha H16] gi|113529016|emb|CAJ95363.1| flagellar motor switch protein [Ralstonia eutropha H16] Length = 339 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 10/302 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P + R+ + + + + + DI+ S + Sbjct: 35 EGGVRPYNLATQERIIRG------RLHTLEIINERFARSMRTALFNFIRRGADITVGSIR 88 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + + L NLV +++NL G ++ R Sbjct: 89 IEKFGDFARNLPMPTNLNLVHLKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEGRD 148 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R + A T E + K NE V T Sbjct: 149 FTQTEQRIIQRMLELTLASYGNAWRTVHPIE--TEYIRSEMHPKFANVATHNEAVVTTAF 206 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 ++ + V + +P + + ++ + + + + + V + Sbjct: 207 HIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDEKEVDKGWVTQLSTQLRAAEVELVAEF 266 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++T+ +V+ ++ G V+P +G + C G + Y +R+ IN Sbjct: 267 AHLQSTVAEVLAMRAGDVLPIELP--EKVFGKVDGVPVMQCGFGTMNGQYALRVERMINH 324 Query: 307 DQ 308 Sbjct: 325 QD 326 >gi|53723902|ref|YP_104282.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 23344] gi|67641904|ref|ZP_00440669.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse 4] gi|121600665|ref|YP_994775.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1] gi|124385588|ref|YP_001027842.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10229] gi|126451066|ref|YP_001082210.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10247] gi|167000456|ref|ZP_02266270.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20] gi|254174753|ref|ZP_04881414.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 10399] gi|254201359|ref|ZP_04907723.1| flagellar motor switch protein FliM [Burkholderia mallei FMH] gi|254206701|ref|ZP_04913052.1| flagellar motor switch protein FliM [Burkholderia mallei JHU] gi|254357364|ref|ZP_04973638.1| flagellar motor switch protein FliM [Burkholderia mallei 2002721280] gi|52427325|gb|AAU47918.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 23344] gi|121229475|gb|ABM51993.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1] gi|124293608|gb|ABN02877.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10229] gi|126243936|gb|ABO07029.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10247] gi|147747253|gb|EDK54329.1| flagellar motor switch protein FliM [Burkholderia mallei FMH] gi|147752243|gb|EDK59309.1| flagellar motor switch protein FliM [Burkholderia mallei JHU] gi|148026428|gb|EDK84513.1| flagellar motor switch protein FliM [Burkholderia mallei 2002721280] gi|160695798|gb|EDP85768.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 10399] gi|238522917|gb|EEP86359.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse 4] gi|243063644|gb|EES45830.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20] Length = 332 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 35/307 (11%), Positives = 88/307 (28%), Gaps = 11/307 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P + R+ + + + L M +IS + Sbjct: 30 AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S + + + NLV +++NL G ++ Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + + + + + NE V Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIAT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 ++ + + +P + + S Q ++ + +++ V + Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + TT + ++ L+ G V+P +G + C G Y +R+ Sbjct: 262 ADLAEVPTTFEKILNLRTGDVLPLDIT--DSITAKVDGVPVMECGYGIFNGQYALRVQRM 319 Query: 304 INFDQKS 310 I+ Sbjct: 320 ISASDTM 326 >gi|325917742|ref|ZP_08179929.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC 35937] gi|325536041|gb|EGD07850.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC 35937] Length = 337 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + E E E+ Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMEVD--FEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ +E + +P L + + Q+ ++ + + Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLNTAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + K+ +L+ + LK+G ++P + L +++ E G N ++ Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPMFTGEFGVSNGNNAVK 315 Query: 300 IT 301 IT Sbjct: 316 IT 317 >gi|34498585|ref|NP_902800.1| flagellar motor switch protein FliM [Chromobacterium violaceum ATCC 12472] gi|34104439|gb|AAQ60797.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] Length = 334 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 34/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + R+ + + + L + + +IS + Sbjct: 32 QGVRGYDIGRQERIVRG------RMPTLEIINERFARNLRIGLFNFLRRNAEISVGPVRV 85 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 K+S I + + + + +LV +++NL G+ ++ R Sbjct: 86 QKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIFDPDLVFLIVDNLFGSDGRYHVRVEGRDF 145 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ R + + + + E V + + Sbjct: 146 TPTEQRIIHRLLEVVFTECQKAWEPVYPIE--FVYLRSEMNTQFANIATPTEVVVAMTFH 203 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + + F + +P + + S Q ++ + V + + Sbjct: 204 IELGAGGGDFHICLPYSMVEPIRDLLSSTMQADRTEVDNRWVNLMTHQVQAAEVELVASL 263 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 K TL ++ LK G V+ +G ++ G V Y +++ + Sbjct: 264 AHAKVTLGQILNLKNGDVVMIEIP--ERVEADVSGIPVFEASYGTVQGRYALKVEKILAG 321 Query: 307 DQKSLKN 313 + L++ Sbjct: 322 TNEFLES 328 >gi|160896094|ref|YP_001561676.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1] gi|160361678|gb|ABX33291.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1] Length = 334 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 40/311 (12%), Positives = 102/311 (32%), Gaps = 7/311 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58 + G+S T + ++ + ++ + + + + + Sbjct: 18 VTGESQKSTTEEVEAGIIRQYDISSQERIVRGRMPTMEIVNERFARNFRIGLFNFIRRSP 77 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ + + C +LV +++ L G + Sbjct: 78 EVSVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I + L + + Sbjct: 138 QTRIEGRDFSHTEQRVINRLVNVICEEYKKAWHGIYPLE--LGYQRSEMQPQFANIATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ S + +P TL + S+Q S + R+ Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVKVLKREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ ++ G I S G I+ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPIFECQYGTHNDKYA 313 Query: 298 IRITDRINFDQ 308 IR+ + + Sbjct: 314 IRVENCLRGAD 324 >gi|170694407|ref|ZP_02885561.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M] gi|170140830|gb|EDT09004.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M] Length = 332 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 36/308 (11%), Positives = 86/308 (27%), Gaps = 11/308 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 QS P + R+ + + + L M +IS Sbjct: 29 QSERVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K+S + + + NLV +++NL G ++ Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + + + + NE V Sbjct: 143 GRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEYMRSEMHT--QFANVATPNEIVIV 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 ++ + + +P + I S Q ++ + +++ V + Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T + ++ ++ G V+P +G + C G Y +R+ Sbjct: 261 TADLAQVPITFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318 Query: 303 RINFDQKS 310 I+ Sbjct: 319 MISAADTM 326 >gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzicola BLS256] Length = 337 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 16/302 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEASQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + + LE E+ Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--LEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ +E + +P L + + Q+ ++ + + Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + K+ +L+ + LK+G ++P + L +++ E G N ++ Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315 Query: 300 IT 301 IT Sbjct: 316 IT 317 >gi|300113610|ref|YP_003760185.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113] gi|299539547|gb|ADJ27864.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113] Length = 336 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 93/309 (30%), Gaps = 11/309 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 K P R+ + + + + + + +++ Q Sbjct: 34 EKTIRPYDFSSEDRI------ARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQ 87 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KFS +H+ + + LV L++ G S E +L NR Sbjct: 88 VLKFSEYLHTLFMPTSLNLVQIHPLRGAGLFVFDPKLVFMLVDRYFGGSGEFYNRLENRE 147 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E + + + + L Q + E + T +E V Sbjct: 148 FTPTEMHIIQLVLERTFTDLKQAWEPVLAIN--FEYLQTEFNPRLATIASPSEIVVVSTF 205 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245 ++ E F + +P L + + + + V + Sbjct: 206 HVEFEGGGGEFHIALPYTLLEPVRELLDTGKKDDFTQADGGWNQALRKNVSDAEVELSCT 265 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+V+ LK G ++P + A+G ++ G + +++ +R+ Sbjct: 266 LTEIRLSLKEVLALKSGDILPIELP--STVTALADGVPVFRVRYGIHNSSRALKVVERLL 323 Query: 306 FDQKSLKNF 314 + + Sbjct: 324 SPESFTEKL 332 >gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp. salmonicida A449] gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 356 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 38/307 (12%), Positives = 94/307 (30%), Gaps = 11/307 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + R+ + + + + M ++S Sbjct: 26 GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF +H+ + I LV L+EN G ++ Sbjct: 80 NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ + + + + + E E + Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241 + ++ ++ F + +P L + + Q+ + + + V Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + ++ TL++++ LK G +IP E ++ + ++GR N ++IT Sbjct: 258 LRAKLLETDLTLRELMELKPGDIIPVEMPEN--LLVYVEDLPTFHAKMGRTKDNVALKIT 315 Query: 302 DRINFDQ 308 D++ + Sbjct: 316 DKLKRPE 322 >gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] Length = 363 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 41/307 (13%), Positives = 95/307 (30%), Gaps = 11/307 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 +T R+ + + + + M ++S Q Sbjct: 34 STLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVSINGVQMI 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF IH+ + I LV L++N G ++ R + Sbjct: 88 KFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + I + + + + E E V + ++ Sbjct: 148 PTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSFHI 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ F + +P L + + Q+ +E+ + + V++ T++ Sbjct: 206 ELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEVDMSTQLL 265 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 TLK ++ LK G +IP + + ++GR N ++I+++I Sbjct: 266 EVDLTLKQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDNVALQISEKIKRP 323 Query: 308 QKSLKNF 314 Sbjct: 324 DSVKSEL 330 >gi|94314217|ref|YP_587426.1| flagellar motor switch protein FliM [Cupriavidus metallidurans CH34] gi|93358069|gb|ABF12157.1| flagellar motor switch protein FliM [Cupriavidus metallidurans CH34] Length = 336 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 38/304 (12%), Positives = 93/304 (30%), Gaps = 10/304 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P + R+ + + + L + DIS + Sbjct: 33 ADDGGVRPYNLANQERIVRG------RLHTLEIINERFARALRTALFNFIRRGADISVGT 86 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+ + + + + NLV +++NL G ++ Sbjct: 87 VRIEKYGDFVRNLPVPTNLNLVHMKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEG 146 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R + + Q T + K N+ V T Sbjct: 147 RDFTQTEQRIIRRMLDLTLSSYGQAWRTVHPIEFDYVRSEMHT--KFANVAGPNDAVVTT 204 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ + V + IP + + ++ + + + + V + Sbjct: 205 AFHIELGAVGGQLHICIPFSMIEPLRDLLMNPLQDEVEVDKRWLGQLSNQLRAAEVELVA 264 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++T+ +V+ ++ G V+P NG + C G + Y +R+ + Sbjct: 265 EFTHLRSTVAEVLAMREGDVLPIELP--EHIFGKVNGVPVMQCGFGTMNGQYALRVERML 322 Query: 305 NFDQ 308 N+ Sbjct: 323 NYQD 326 >gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565] gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565] Length = 356 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + R+ + + + + M ++S Sbjct: 26 GGAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF +H+ + I LV L+EN G ++ Sbjct: 80 NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ + + + + + E E + Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241 + ++ ++ F + +P L + + Q+ + + + V Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + ++ + TL++++ L+ G +IP E ++ + ++GR N ++IT Sbjct: 258 LRAKLLETELTLRELMELRPGDIIPVDMPEN--LLVFVEDLPTFHAKMGRTKDNVALKIT 315 Query: 302 DRINFDQ 308 D++ + Sbjct: 316 DKLKRPE 322 >gi|161523223|ref|YP_001578235.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC 17616] gi|189348920|ref|YP_001944548.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC 17616] gi|221201776|ref|ZP_03574813.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2M] gi|221207719|ref|ZP_03580727.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2] gi|221214537|ref|ZP_03587507.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1] gi|160340652|gb|ABX13738.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC 17616] gi|189332942|dbj|BAG42012.1| flagellar motor switch protein [Burkholderia multivorans ATCC 17616] gi|221165427|gb|EED97903.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1] gi|221172565|gb|EEE05004.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2] gi|221178196|gb|EEE10606.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2M] Length = 332 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 87/303 (28%), Gaps = 11/303 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 P + R+ + + + L M +IS + + Sbjct: 34 GVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKVQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K+S + + + NLV +++NL G ++ R + Sbjct: 88 KYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + + + + + NE V ++ Sbjct: 148 ATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFSI 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + + +P + + S Q ++ + +++ V + + Sbjct: 206 EFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAEVELTADLA 265 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 TT + ++ L+ G V+P +G + C G Y +R+ I+ Sbjct: 266 EIPTTFEKILNLRAGDVLPLD--IADTITAKVDGVPVMECGYGIFNGQYALRVQKMISAS 323 Query: 308 QKS 310 Sbjct: 324 DTM 326 >gi|323527699|ref|YP_004229852.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001] gi|323384701|gb|ADX56792.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001] Length = 332 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 36/308 (11%), Positives = 86/308 (27%), Gaps = 11/308 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 QS P + R+ + + + L M +IS Sbjct: 29 QSERVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K+S + + + NLV +++NL G ++ Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + + + + NE V Sbjct: 143 GRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEYMRSEMHT--QFANVATPNEIVIV 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 ++ + + +P + I S Q ++ + +++ V + Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T + ++ ++ G V+P +G + C G Y +R+ Sbjct: 261 TADLAQVPITFEQILNMRKGDVLPINIP--EQITAKVDGVPVMECGYGIFNGQYALRVQK 318 Query: 303 RINFDQKS 310 I+ Sbjct: 319 MISAADTM 326 >gi|296135698|ref|YP_003642940.1| flagellar motor switch protein FliM [Thiomonas intermedia K12] gi|294339869|emb|CAZ88232.1| Flagellar motor switch [Thiomonas sp. 3As] gi|295795820|gb|ADG30610.1| flagellar motor switch protein FliM [Thiomonas intermedia K12] Length = 336 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 90/304 (29%), Gaps = 11/304 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P R+ + + + + +IS +S Sbjct: 30 ADEGGVRPYDLASQDRIVRG------RMPTLEVINERFARLWRVSLFNFLRRASEISVSS 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K++ I + + L+ ++++N G ++ Sbjct: 84 VKLTKYNEFIRGLVVPSNLNLVQMKPLRGTALFIFDPRLIFSVIDNFFGGDGRFHARIEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + +E+++ KR + + + P L + E V Sbjct: 144 RDFTPLEQRIIKRMLDMVFKEYKTAWAPVLPLEPELTRSEV--NPQFVNIATPTEVVIVS 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNID 243 ++ IE S + IP + + + + + V + Sbjct: 202 TFDVEIEGGGGSLHVCIPYSMVEPIRDQLTTGMTTDRSEVDHRWVKALQTEMREAEVEMR 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + ++ +++++ L++G V+P I +G + E GR ++I + Sbjct: 262 VELLQRQILVRELLNLRVGDVLPVDMP--ETVIARVDGIPVLLGEYGRHEDKMALKIRQQ 319 Query: 304 INFD 307 + + Sbjct: 320 LFPE 323 >gi|124516745|gb|EAY58253.1| Flagellar motor switch protein FliM [Leptospirillum rubarum] Length = 338 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 92/304 (30%), Gaps = 3/304 (0%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ K P+ L + + + + +F + V+ S Sbjct: 24 ETQAKAADSGEPVKQYNLASQERVIRGRMPTLEIINERFARFFQVTLSATLRKTVEFSPQ 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + KF + + L S N + +V L++++ G S ++ Sbjct: 84 GIEMVKFGDFVKKIPMPSNINILRLESLRRNILLIIDARMVYLLVDHMFGGSGRGHVKIE 143 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R S +E ++++ + + + + + E V T Sbjct: 144 GRDFSPIEARISRNVMDLAIGDFEKAWAPVHPM--PITYIRSEINPQFAAIVAPTEMVVT 201 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNI 242 + + I+ + + IP T+ Q+ I+ + + + I Sbjct: 202 MAYRLEIDGQGRTIYICIPYSTIEPIKEKLYTGFQSDQYEVDSRWINRLQERVEEAPLEI 261 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + I + TL+D++ K G V + G + G + IRI Sbjct: 262 EAFIGETRFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLARPGIFRHHRAIRIER 321 Query: 303 RINF 306 R+ Sbjct: 322 RVPP 325 >gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] Length = 337 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + E E E+ Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMEVD--FEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ +E + +P L + + Q+ ++ + + Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + K+ +L+ + LK+G ++P + L +++ E G N ++ Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315 Query: 300 IT 301 IT Sbjct: 316 IT 317 >gi|295678044|ref|YP_003606568.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002] gi|295437887|gb|ADG17057.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002] Length = 332 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 34/310 (10%), Positives = 88/310 (28%), Gaps = 11/310 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 Q+ P + R+ + + + L M +IS Sbjct: 27 SEQNDRTGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + K+S + + + NLV +++NL G + Sbjct: 81 VGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTR 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ + + + + + NE V Sbjct: 141 VEGRDFTQTEQRIITKLLNLTFEHYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIV 198 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240 ++ + + + +P + + S Q ++ + + +++ V Sbjct: 199 IVTQFSIEFGSTGGTLHICMPYSMIEPIRDVLSSPIQGEAMDVDRRWVRVLSQQVQAAEV 258 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T + ++ ++ G V+P +G + C G Y +R+ Sbjct: 259 QLTADLAQVPVTFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRV 316 Query: 301 TDRINFDQKS 310 I+ Sbjct: 317 QKMISAADTM 326 >gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] Length = 326 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 11/306 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q+ R+ + + + + + +IS Sbjct: 31 QAHDGVARGYDFTSQDRIVRG------RMPTLEMINERFARQMRISLFNLLRRSAEISVG 84 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + KFS +H+ + + LV L++N G ++ Sbjct: 85 GIKMTKFSEYVHTLFVPTSLNMVKIKPLRGTALFVVDPKLVFILVDNFFGGDGRYHAKIE 144 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E ++ + T+ Q L + + + E + E V Sbjct: 145 GREFTPTELRVIRMTLDQAFTDLKKAWAPVMDLD--FEYINSEVNPQFANIVSPTEVVCV 202 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 + ++ ++ + +P + + + Q+ + E I + V + Sbjct: 203 SSFHIELDGGGGDLHVTMPYSMIEPMRELLDAGIQSDRSDVDERWIRALRDEVKAAEVEL 262 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + +L+DV+ LK G +IP +L A G + + G I++T+ Sbjct: 263 SSMLTETTLSLEDVMRLKPGDIIPIDLP--EQVLLRAEGIPVLRGKFGVSDGYNAIKVTE 320 Query: 303 RINFDQ 308 RI Sbjct: 321 RIRRAD 326 >gi|167560937|ref|ZP_02353853.1| flagellar motor switch protein FliM [Burkholderia oklahomensis EO147] gi|167568197|ref|ZP_02361071.1| flagellar motor switch protein FliM [Burkholderia oklahomensis C6786] Length = 332 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 34/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P + R+ + + + L M +IS + Sbjct: 30 AEASGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S + + + NLV +++NL G ++ Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + + + + + + NE V Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYSVAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 ++ + + +P + + S Q ++ + +++ V + Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + TT + ++ L+ G V+P +G + C G Y +R+ Sbjct: 262 ADLAEIPTTFEKILNLRAGDVLPLD--IAETLTAKVDGVPVMECGYGIFNGQYALRVQKM 319 Query: 304 INFDQKS 310 ++ Sbjct: 320 VSASDTM 326 >gi|124265765|ref|YP_001019769.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] gi|124258540|gb|ABM93534.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] Length = 333 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 103/307 (33%), Gaps = 7/307 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58 + G+S T + + ++ + + + + + + Sbjct: 18 ITGESQKLETEEVEQGGVRDYNLASQERIVRGRMPTMEIINERFSRNIRIGLFNFIRRTP 77 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +++ + + K+S + F+ ++ + I C LV +++ L G + + Sbjct: 78 EVAVGTIKVQKYSAFLREIVVPTNFNIMAVRPLRGSGLIVCDPTLVFAVIDALFGGAGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E ++ R + ISA + + LE + T + Sbjct: 138 HTRIEGRDFSPTELRVISRLVEVISAEYKKAWAGVYPVE--LEYQRSEMQPQFATIAAPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V T + + I + + + IP TL S+ Q + + ++ Sbjct: 196 EIVVTTSFTVEIGDTSGTIHFCIPYATLEPIRDTLYSTVQGDANEPDRRWVKLLTQQIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V++ + T++ ++ LK G I +G ++ C G Y Sbjct: 256 AEVDLVAELAQAPATVEQLLALKPGDFIELDL--DQVVHAKVDGVPVFDCHYGTSNGKYA 313 Query: 298 IRITDRI 304 I+I + Sbjct: 314 IKIDQLL 320 >gi|167834865|ref|ZP_02461748.1| flagellar motor switch protein FliM [Burkholderia thailandensis MSMB43] Length = 332 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 35/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P + R+ + + + L M +IS + Sbjct: 30 AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S + + + NLV +++NL G ++ Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + + + + + + NE V Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLAFEFVRSEMHT--QFANVATPNEIVIVT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 ++ + + +P + + S Q ++ + +++ V + Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + TT + ++ L+ G V+P +G + C G Y +R+ Sbjct: 262 ADLAEVPTTFEKILNLRAGDVLPLD--IAESISAKVDGVPVMECGYGIFNGQYALRVQKM 319 Query: 304 INFDQKS 310 I+ Sbjct: 320 ISASDTM 326 >gi|190574232|ref|YP_001972077.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia K279a] gi|190012154|emb|CAQ45777.1| putative flagellar motor switch protein FliM [Stenotrophomonas maltophilia K279a] Length = 334 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 11/302 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 R+ + + + + ++S + Sbjct: 32 EARSYDFASQDRIIRG------RMPTLEMVHERFARLWRIGLFNLIRRSAELSVRGIELI 85 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF+ +HS + I LV +++N G ++ R + Sbjct: 86 KFNDYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFT 145 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ + Q A L + + + E E+V +++ Sbjct: 146 ATEMRVIHLLLKQTFADLREAWAPVMDVD--FEYINSEINPHFANIVTPREYVVVCRLHV 203 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ + +P L + + Q+ ++ E + V + + + Sbjct: 204 ELDGGGGDIHVTLPYSMLEPIRELLDAGIQSDRNDRDESWGKTLREQLNIAEVTLSSVLA 263 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 K+ TL+D+ LK+G ++P + + +++ E G ++IT Sbjct: 264 SKRMTLRDLTQLKVGDILPIELSPQVP--VCVENIPVFTGEFGIANGMNAVKITATHPPG 321 Query: 308 QK 309 + Sbjct: 322 TR 323 >gi|206603652|gb|EDZ40132.1| Flagellar motor switch protein FliM) [Leptospirillum sp. Group II '5-way CG'] Length = 338 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 92/304 (30%), Gaps = 3/304 (0%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ K P+ L + + + + +F + V+ S Sbjct: 24 ETQAKAADSGEPVKQYNLASQERVIRGRMPTLEIINERFARFFQVTLSATLRKTVEFSPQ 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + KF + + L S N + +V L++++ G S ++ Sbjct: 84 GIEMVKFGDFVKKIPMPSNINILRLESLRRNILLIIDARMVYLLVDHMFGGSGRGHVKIE 143 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R S +E ++++ + + + + + E V T Sbjct: 144 GRDFSPIEARISRNVMDLAIGDFEKAWAPVHPM--PITYIRSEINPQFAAIVAPTEMVVT 201 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNI 242 + + I+ + + IP T+ Q+ I+ + + + I Sbjct: 202 MAYRLEIDGQGRTIYICIPYSTIEPIKEKLYTGFQSDQYEVDSRWINRLQERVEEAPLEI 261 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + I + TL+D++ K G V + G + G + IRI Sbjct: 262 EAFIGEARFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLARPGIFRHHRAIRIER 321 Query: 303 RINF 306 R+ Sbjct: 322 RVPP 325 >gi|83720285|ref|YP_440587.1| flagellar motor switch protein FliM [Burkholderia thailandensis E264] gi|167579274|ref|ZP_02372148.1| flagellar motor switch protein FliM [Burkholderia thailandensis TXDOH] gi|167617380|ref|ZP_02386011.1| flagellar motor switch protein FliM [Burkholderia thailandensis Bt4] gi|83654110|gb|ABC38173.1| flagellar motor switch protein FliM [Burkholderia thailandensis E264] Length = 332 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 35/307 (11%), Positives = 88/307 (28%), Gaps = 11/307 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P + R+ + + + L M +IS + Sbjct: 30 AESSGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S + + + NLV +++NL G ++ Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + + + + + NE V Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYAVAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 ++ + + +P + + S Q ++ + +++ V + Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + TT + ++ L+ G V+P +G + C G Y +R+ Sbjct: 262 ADLAEVPTTFEKILNLRAGDVLPLD--IADSITAKVDGVPVMECGYGIFNGQYALRVQKM 319 Query: 304 INFDQKS 310 I+ Sbjct: 320 ISASDTM 326 >gi|167464156|ref|ZP_02329245.1| flagellar motor switch protein FliM [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382382|ref|ZP_08056289.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153735|gb|EFX46110.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 332 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 39/316 (12%), Positives = 106/316 (33%), Gaps = 13/316 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + + R K + + + + ++L F ++ V I Sbjct: 27 LKKEETQRKIRSYDFKRAVRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + I S + + + + N+ +L++LLG + Sbjct: 81 NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVHPNVAYAMLDHLLGGVGVSPS 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ +L+ +E + +R ++ L + T + P LE + NE Sbjct: 141 KIN--ALTEIETIVMERIFSKAFDSLQEAWKTVVDLQPRLEALET--NPQFMQIVSPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 + I+++ I + L IP + ++ ++++ + ++ + Q Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVIEPIMPRLSVHSWFVSQKKSRAPEEVEALQFRLNQ 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + T+ + + L +G VI + K Y+ G V Sbjct: 257 AKLPFVAELGSSHITVHEFLNLSVGDVITLQKPVNEPLKIRIGDKYKYTGSPGTVRGKMA 316 Query: 298 IRITDRINFDQKSLKN 313 ++I + ++ ++ Sbjct: 317 VQINEPVSEGEEEYDE 332 >gi|226941271|ref|YP_002796345.1| flagellar motor switch protein FliM [Laribacter hongkongensis HLHK9] gi|226716198|gb|ACO75336.1| FliM [Laribacter hongkongensis HLHK9] Length = 329 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 40/311 (12%), Positives = 94/311 (30%), Gaps = 11/311 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + R+ + + + L + + +IS Sbjct: 28 SAASSVKNYDIGRQERIVRG------RMPTLEIINERFARNLRIGLFNFIRRNAEISVGP 81 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S I + + + + +LV +++NL G+ ++ Sbjct: 82 VKVQKYSEFIRNLVVPTNLNLCHVKPLRGTALLIFDPDLVFLVVDNLFGSDGRYHVRVEG 141 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R + + + + + E V ++ Sbjct: 142 RDFTPTEQRIIRRLLDVVFSEYQKAWEPVYPIEFLYMRSEM--NTQFANIATPTEVVVSM 199 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNID 243 + + F + +P + S+ + +R+ V + Sbjct: 200 TFRIELGAGGGDFHVCMPYSMVEPIRDQLSSTMAADRTEIDNRWVSLLSRQVQIAEVELV 259 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + TL D++ LK G VIP E A +S G + C G Y +R+ Sbjct: 260 ATLAEAQITLGDILNLKTGDVIPVEIPESIVADVS--GIPVLDCRYGTANGQYALRVERL 317 Query: 304 INFDQKSLKNF 314 + + + Sbjct: 318 LAGAHELEQGL 328 >gi|332524239|ref|ZP_08400465.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus JA2] gi|332107574|gb|EGJ08798.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus JA2] Length = 334 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 93/304 (30%), Gaps = 11/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + R+ + + + + + ++S Sbjct: 29 EQTAGGIRDYDLSSQERIVRG------RMPTMEVINERFARNIRIGLFNLIRKSPEVSIG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + KFS + F+ S+ + I C N+V +++ L G + + ++ Sbjct: 83 GIKVQKFSAFLREIVVPTNFNLVSVKPLRGSGLIVCDPNVVFAVIDALFGGAGKFHTRIE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R S E ++ R + I A + LE + +E V + Sbjct: 143 GRDFSPTELRVILRLVECIIAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVS 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 + I + + + IP TL + S+ Q S ++ + V++ Sbjct: 201 TAFTLEIGDTSGAVHFCIPYSTLEPIRDVLYSTIQGDSAEPDRRWVNLLKHQIQAAEVDL 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T++ +++ K G I +G ++ C G Y I+I Sbjct: 261 VAELGHAPATVEQLLSFKPGDFIELDLDP--MIQAKVDGVPVFDCHYGTTNGRYAIKIDR 318 Query: 303 RINF 306 + Sbjct: 319 LLTS 322 >gi|71278806|ref|YP_268251.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H] gi|71144546|gb|AAZ25019.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H] Length = 354 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 92/305 (30%), Gaps = 11/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TS R+ + + + + M ++S Sbjct: 31 QSRDGTSDYDFSSQDRIVRG------RMPTLEMVNERFARHMRISLFNMMRRTAEVSING 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF IH+ + I LV L++N G ++ Sbjct: 85 IQMIKFGEYIHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVDNFFGGDGRYHAKIEG 144 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + + + S + + E E V Sbjct: 145 REFTPTERRIIQMLLKLVFEDYKEAWSPVMDV--SFEYLDSEVNPSMANIVSPTEVVVIS 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 + ++ ++ F + +P L + + Q+ E+ + + V I+ Sbjct: 203 SFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTDMRWSKALRDEIMDVPVTIN 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 T+ +L V+ L+ G +IP + + + +LGR N ++I + Sbjct: 263 TKFIEVDISLSQVMELQAGDIIPIEMPDN--ITVLIEDLPTFRAKLGRSRDNIALKIESK 320 Query: 304 INFDQ 308 I + Sbjct: 321 IRRPE 325 >gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 349 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 36/309 (11%), Positives = 96/309 (31%), Gaps = 11/309 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + + + + R+ + + + + + ++ Sbjct: 24 LHDNDVANDVATFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEV 77 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S Q KF ++ + I LV L+EN G Sbjct: 78 SINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHA 137 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ + + + + S E E Sbjct: 138 KIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEV 195 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 + + ++ ++ F +++P + + + Q+ + + + Sbjct: 196 IVVSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVP 255 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 VN+ ++ +L+D++ L++G VIP A + Y ++GR G N ++ Sbjct: 256 VNLRAKLLDVDLSLRDLMELQVGDVIPIDMP--EQATIFVEDLPTYHAKMGRSGDNVALK 313 Query: 300 ITDRINFDQ 308 I++++ Sbjct: 314 ISEKLQRPD 322 >gi|187926920|ref|YP_001893265.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J] gi|241665249|ref|YP_002983608.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D] gi|187728674|gb|ACD29838.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J] gi|240867276|gb|ACS64936.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D] Length = 335 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 40/310 (12%), Positives = 99/310 (31%), Gaps = 9/310 (2%) Query: 1 MRGQSIHKNTSPL--HPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDL 56 ++G S + P+ P + ++ + + + + M Sbjct: 16 LKGVSDEADEEPVEADPSGIRTYNLGSQERIVRGRMPTLEIINERFARNWRIGLFNFMRR 75 Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 + +IS + K+S I + + + NL+ +++NL G Sbjct: 76 NAEISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFGGDG 135 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 ++ R + VE+++ +R + + + + Sbjct: 136 RFHMRVEGRDFTDVEQRIIQRMLQLVFEHYARAWQPVYPIDFEFLRMEMHT--EFANVAT 193 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKT 235 NE V T ++ + N + +P + S+ Q ++ + + +++ Sbjct: 194 PNEVVVTTTFSLELGNNGGDVHICMPYTMIEPIRDRLTSAIQGEALEVDKRWLRLLSQQV 253 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 V + + + D++ +K+G VIP +G + C G Sbjct: 254 QTAEVELIADLATANVQVSDILNMKVGDVIPLEL--DDVVTAKVDGVPVMECNYGTFNGQ 311 Query: 296 YTIRITDRIN 305 Y +R+ +N Sbjct: 312 YALRVNRMLN 321 >gi|187478203|ref|YP_786227.1| flagellar motor switch protein [Bordetella avium 197N] gi|115422789|emb|CAJ49317.1| flagellar motor switch protein [Bordetella avium 197N] Length = 334 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 35/309 (11%), Positives = 95/309 (30%), Gaps = 12/309 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 S R+ + + + + + + + M DI+ Sbjct: 28 SSSSEDNGARAYDLSSPDRVV------RRRMQTLELINERFARNMRHVLLNFMRRSADIT 81 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 S + K++ + + + +LV ++++L G + Sbjct: 82 VGSIKIIKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPSLVFLVIDSLFGGDGRYHTR 141 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R +T E+++ +R + + + K + +NE V Sbjct: 142 VEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFDYVRSEMHT--KFASITGNNEVV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLN 239 + ++ + +P + + S E + +R+ + Sbjct: 200 VVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDSALEEVDQRWSQQLSRQVRSAD 259 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +++ ++++ ++ LK+G V+P +G + C G Y +R Sbjct: 260 IDLVAEFARIPSSIRGLMNLKVGDVLPVDVP--ESITAHVDGVPLMECSYGVFNGKYALR 317 Query: 300 ITDRINFDQ 308 + + +N D Sbjct: 318 VQNMLNQDD 326 >gi|89899368|ref|YP_521839.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118] gi|89344105|gb|ABD68308.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118] Length = 329 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 95/279 (34%), Gaps = 5/279 (1%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + + L + +IS ++S + F+ ++ Sbjct: 50 RMPTMEIVNERFARNLRVGLFNFIRRSPEISVGPVTVQRYSAFLRELAVPTNFNIVAIRP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + I C +LV +++ L G + ++ R S E+++ R + I+ + Sbjct: 110 LRGSGMIVCEPSLVFGVIDTLYGGIGKFQARIEGRDFSATEQRVINRLVDVITEEYKKAW 169 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 LE + +E V + + + I +A S +P TL Sbjct: 170 KGVYPLE--LEYQRSEMQPQFANIATPSEIVISTSFQLEIGEIAGSIHFCMPYATLEPIR 227 Query: 211 LIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 I S+Q S + ++ ++ + + + T++ ++ +K G I Sbjct: 228 DILYSSTQGDSIEVDKRWVNVLTQEIQAAEITLVAELARADATVEQLLAMKTGDFIELDR 287 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + ++ G ++ C+ G Y IRI + + Sbjct: 288 P--SRIEVTVEGVPVFECQYGTHNAKYAIRIDKSLRGND 324 >gi|269103169|ref|ZP_06155866.1| flagellar motor switch protein FliM [Photobacterium damselae subsp. damselae CIP 102761] gi|268163067|gb|EEZ41563.1| flagellar motor switch protein FliM [Photobacterium damselae subsp. damselae CIP 102761] Length = 347 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 36/305 (11%), Positives = 93/305 (30%), Gaps = 11/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S R+ + + + + + ++S Sbjct: 28 SSETGVITFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSING 81 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF ++ + + L+ L+EN G ++ Sbjct: 82 VQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLIFILVENFFGGDGRFHAKIEG 141 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + + + S E E + Sbjct: 142 REFTPTERRIIQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVS 199 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 + ++ ++ F +++P + + + Q+ + + + VNI Sbjct: 200 SFHIELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSRALREEIMDIPVNIR 259 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 ++ TL+D++ L++G +IP A + Y ++GR G N ++I+++ Sbjct: 260 AKLLDVDLTLRDLMELQVGDIIPVDMP--DTATVFVEDLPTYRAKMGRSGDNVALKISEK 317 Query: 304 INFDQ 308 + Sbjct: 318 LKRPD 322 >gi|21231367|ref|NP_637284.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991610|ref|YP_001903620.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. B100] gi|21113030|gb|AAM41208.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167733370|emb|CAP51571.1| Flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris] Length = 337 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + + E E+ Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ +E + +P L + + Q+ ++ + + Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + K+ +L+ + LKIG ++P + L +++ E G N ++ Sbjct: 258 VTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315 Query: 300 IT 301 IT Sbjct: 316 IT 317 >gi|194365650|ref|YP_002028260.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia R551-3] gi|194348454|gb|ACF51577.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia R551-3] Length = 334 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 11/302 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 R+ + + + + ++S + Sbjct: 32 EARSYDFASQDRIIRG------RMPTLEMVHERFARLWRIGLFNLIRRSAELSVRGIELI 85 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF+ +HS + I LV +++N G ++ R + Sbjct: 86 KFNDYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFT 145 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ + Q A L + + + E E+V +++ Sbjct: 146 ATEMRVIHLLLKQTFADLREAWAPVMDVD--FEYINSEINPHFANIVTPREYVVVCRLHV 203 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ + +P L + + Q+ ++ E + V + + + Sbjct: 204 ELDGGGGDIHVTLPYSMLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLA 263 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 K+ TL+D+ LK+G ++P + L +++ E G ++IT Sbjct: 264 SKRMTLRDLTQLKVGDILPIELSPQVP--LCVENIPVFTGEFGIANGMNAVKITATHPPG 321 Query: 308 QK 309 + Sbjct: 322 TR 323 >gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14] gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14] Length = 349 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 95/304 (31%), Gaps = 11/304 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + + + R+ + + + + + ++S Sbjct: 29 VANDVATFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 82 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 Q KF ++ + I LV L+EN G ++ R Sbjct: 83 QMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGR 142 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ + + + + S E E + + Sbjct: 143 EFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSS 200 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ ++ F +++P + + + Q+ + + + VN+ Sbjct: 201 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRA 260 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ +L+D++ L++G VIP A + Y ++GR G N ++I++++ Sbjct: 261 KLLDVDLSLRDLMELQVGDVIPIDMP--EQATIFVEDLPTYHAKMGRSGDNVALKISEKL 318 Query: 305 NFDQ 308 Sbjct: 319 QRPD 322 >gi|42766718|gb|AAS45442.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei] Length = 332 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 36/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P + R+ + + + L M +IS + Sbjct: 30 AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S + + + S NLV +++NL G ++ Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKSLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + + + + + NE V Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 ++ + + +P + + S Q ++ + +++ V + Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + TT + ++ L+ G V+P +G + C G Y +R+ Sbjct: 262 ADLAEVPTTFEKILNLRTGDVLPLDIT--DSITAKVDGVPVMECGYGIFNGQYALRVQRM 319 Query: 304 INFDQKS 310 I+ Sbjct: 320 ISASDTM 326 >gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] Length = 331 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 96/297 (32%), Gaps = 10/297 (3%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 R+ + + +F+ + +I + Q K Sbjct: 45 VREYDFASQERIVRG------RMPTLEMVNERFARFIRISLFNFLRRSAEIFISGIQVQK 98 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 FS I + + I LV T+++N G + + Q R + Sbjct: 99 FSEYIQGLLVPTNLTIVRFNPLRGKALIVIDPRLVFTVVDNFFGGAGQFYNQTEGREFTP 158 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E ++ + I I L + E E + E + +++ Sbjct: 159 TEMRVVRIIIDMIFKDLKEAWKPVMELD--FEYVGAEINPRFANIIGPGEIIVISTIHVE 216 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 +E + +P L + + + S + + V+I++ + K Sbjct: 217 LEGGGGDVNIAMPYAMLEPIRELLDAISSDSGEVDGGWQAALRGEVLRAEVSINSLLVEK 276 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 T++DV+ LK G VIP IL A G ++ ++G NY I+I D++ Sbjct: 277 NMTIRDVMRLKKGDVIPIDMP--DTVILKAEGIPVFEGKVGISDGNYAIQIIDKVKS 331 >gi|59712452|ref|YP_205228.1| flagellar motor switch protein FliM [Vibrio fischeri ES114] gi|197335836|ref|YP_002156671.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11] gi|59480553|gb|AAW86340.1| flagellar motor switch protein FliM [Vibrio fischeri ES114] gi|197317326|gb|ACH66773.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11] Length = 344 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 33/297 (11%), Positives = 86/297 (28%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + ++S KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVSMVKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + + LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + I + S E E + + ++ ++ Sbjct: 151 RIIQLLLKVIFEDYKEAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F ++ P + + + Q+ + + + V + + + Sbjct: 209 GGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESQI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +L+D++ L+ G +IP A + Y ++G+ I+IT++I Sbjct: 269 SLRDLMELEAGDIIPVEMP--EAATVFVEDLPTYRGKVGQSNDKLAIQITEKIKRPD 323 >gi|288942630|ref|YP_003444870.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM 180] gi|288898002|gb|ADC63838.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM 180] Length = 325 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 11/302 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 P R+ + + ++L + +IS Sbjct: 34 TDGQARPYDFATQDRIVRG------RMPTLDMINERFARYLRVHLFNLLRRSSEISVIGA 87 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + KFS +HS + + LV L++N G ++ R Sbjct: 88 RVTKFSEYLHSLYVPTSLNLVRVYPLHGTALFVFDPKLVFGLVDNFFGGDGRYYSRIEGR 147 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + +E ++ K + + + + + + E V + Sbjct: 148 DFTPMEMRVIKNLLDASFSDMQKAWEPVMHLDFEFINAEV--NPQFANIVSPTEIVVIND 205 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ +E + + P + + + Q+ + + V I + Sbjct: 206 FHIELEGGGGNMHVTFPYSMIEPIREVLDTGLQSDRSGVDQRWQRALEEEIPLAKVEISS 265 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + T++ ++ +K G +IP +L+ ++ + G I+I + I Sbjct: 266 VLTEVTLTVEQLLEVKPGDIIPVDLP--ETIVLNVEDIPLFRGKFGVSNGINAIKIMEHI 323 Query: 305 NF 306 Sbjct: 324 KH 325 >gi|253573530|ref|ZP_04850873.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon 786 str. D14] gi|251847058|gb|EES75063.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon 786 str. D14] Length = 333 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 39/316 (12%), Positives = 108/316 (34%), Gaps = 13/316 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + + ++L F ++ V I Sbjct: 27 LKKEETQKKIRSYDFKRAVRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + I S + + + + N+ +L+ LLG Sbjct: 81 NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAFAMLDRLLGGLGTAPS 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ L+ +E + +R ++ L + T + +P +E + NE Sbjct: 141 KVGT--LTEIETIIMERIFSRAFESLQEAWKTVVDINPRMEALET--NPQFMQIVSPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 + I+++ I + + L IP + ++ +++ + ++ + + Sbjct: 197 IALISLSTKIGDTSGMINLCIPHVVIEPIMPKLSVHHWFVSQKKSRVPEEVEALRNRVNK 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + I + + T+++ ++L +G VI + + + Y G V Sbjct: 257 AKLPIIAELGESQITVREFLSLSVGDVISLNKPVQEGLQIRVGDRLKYIGSPGTVKDRLA 316 Query: 298 IRITDRINFDQKSLKN 313 ++I + ++ + L Sbjct: 317 VQIDEIVSEGAEELDE 332 >gi|171057710|ref|YP_001790059.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6] gi|170775155|gb|ACB33294.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6] Length = 334 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 41/306 (13%), Positives = 94/306 (30%), Gaps = 12/306 (3%) Query: 1 MRGQSIHKN-TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 + + K R+ + + + + + + Sbjct: 25 LEQEDTPKGGIRDYDLASQERIVRG------RMPTLEIINERFSRNIRIGLFNFIRKTPE 78 Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 +S + K+S + F+ S+ + I C LV ++++ L G S + Sbjct: 79 VSVGGIKVQKYSAFLRETVVPTNFNIVSVRPLRGSGMIVCDPTLVFSVIDALFGGSGKFH 138 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ R S E+++ R + I+ + LE + E Sbjct: 139 TRIEGRDFSPTEQRVISRIVEVIATEYKKAWQGIYPLE--LEYQRSEMQPQFANIAAPGE 196 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQL 238 V T + + I + + IP TL + S+Q S + + Sbjct: 197 IVVTTSFTLEIGDATGTIHFCIPYATLEPIRDVLYSSTQGDSAEPDRRWVKLMTHQIQAA 256 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V + + T++ ++ LK G I + + +G + + G Y + Sbjct: 257 QVQLVAELAHAPATVEQLLALKAGDFIELDLIKS--IEVKVDGVPVMEAQYGTSNGKYAL 314 Query: 299 RITDRI 304 ++ + Sbjct: 315 KVDRML 320 >gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila] Length = 356 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + R+ + + + + M ++S Sbjct: 26 GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF +H+ + I LV L+EN G ++ Sbjct: 80 NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ + + + + + E E + Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241 + ++ ++ F + +P L + + Q+ + + + V Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + ++ + TL++++ L+ G +IP E ++ + ++GR N ++IT Sbjct: 258 LRAKLLETELTLRELMELQPGDIIPVEMPEN--LLVFVEDLPTFHAKMGRTKDNVALKIT 315 Query: 302 DRINFDQ 308 D++ + Sbjct: 316 DKLKRPE 322 >gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 356 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + R+ + + + + M ++S Sbjct: 26 GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF +H+ + I LV L+EN G ++ Sbjct: 80 NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ + + + + + E E + Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241 + ++ ++ F + +P L + + Q+ + + + V Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + ++ + TL++++ L+ G +IP E ++ + ++GR N ++IT Sbjct: 258 LRAKLLETELTLRELMELQPGDIIPVEMPEN--LLVFVEDLPTFHAKMGRTKDNVALKIT 315 Query: 302 DRINFDQ 308 D++ + Sbjct: 316 DKLKRPE 322 >gi|254523832|ref|ZP_05135887.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14] gi|219721423|gb|EED39948.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14] Length = 334 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 11/302 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 R+ + + + + ++S + Sbjct: 32 EARSYDFASQDRIIRG------RMPTLEMVHERFARLWRIGLFNLIRRSAELSVRGIELI 85 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF+ +HS + I LV +++N G ++ R + Sbjct: 86 KFNDYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFT 145 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ + Q A L + + + E E+V +++ Sbjct: 146 ATEMRVIHLLLKQTFADLREAWAPVMDVD--FEYINSEINPHFANIVTPREYVVVCRLHV 203 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ + +P L + + Q+ ++ E + V + + + Sbjct: 204 ELDGGGGDIHVTLPYSMLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLA 263 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 K+ TL+D+ LK+G V+P + L +++ E G ++IT Sbjct: 264 SKRMTLRDLTRLKVGDVLPIELNPQVP--LCVENIPVFTGEFGIANGMNAVKITATHPPG 321 Query: 308 QK 309 + Sbjct: 322 TR 323 >gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 349 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 36/309 (11%), Positives = 95/309 (30%), Gaps = 11/309 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + + + R+ + + + + + ++ Sbjct: 24 LHDDEASSDVATFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEV 77 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S Q KF ++ + I LV L+EN G Sbjct: 78 SINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHA 137 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ + + + + S E E Sbjct: 138 KIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEV 195 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 + + ++ ++ F +++P + + + Q+ + + + Sbjct: 196 IVVSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVP 255 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 VN+ ++ +L+D++ L++G VIP A + Y ++GR G N ++ Sbjct: 256 VNLRAKLLDVDLSLRDLMELQVGDVIPIDMP--EQATIFIEDLPTYHAKMGRSGDNVALK 313 Query: 300 ITDRINFDQ 308 I++++ Sbjct: 314 ISEKLKRPD 322 >gi|58582231|ref|YP_201247.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624124|ref|YP_451496.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576791|ref|YP_001913720.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576983|ref|YP_001913912.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426825|gb|AAW75862.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368064|dbj|BAE69222.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521243|gb|ACD59188.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521435|gb|ACD59380.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] Length = 337 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 16/302 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTMEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + + LE E+ Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--LEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239 V ++ +E + +P L + + Q+ ++ + + Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + K+ +L+ + LK+G ++P + L +++ E G N ++ Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315 Query: 300 IT 301 IT Sbjct: 316 IT 317 >gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila] Length = 356 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + R+ + + + + M ++S Sbjct: 26 GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF +H+ + I LV L+EN G ++ Sbjct: 80 NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ + + + + + E E + Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241 + ++ ++ F + +P L + + Q+ + + + V Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + ++ TL++++ L+ G +IP E ++ + ++GR +N ++IT Sbjct: 258 LRAKLLETDLTLRELMELRPGDIIPVEMPEN--LLVYVEDLPTFHAKMGRTKENVALKIT 315 Query: 302 DRINFDQ 308 D++ + Sbjct: 316 DKLKRPE 322 >gi|239817144|ref|YP_002946054.1| flagellar motor switch protein FliM [Variovorax paradoxus S110] gi|239803721|gb|ACS20788.1| flagellar motor switch protein FliM [Variovorax paradoxus S110] Length = 333 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 83/280 (29%), Gaps = 4/280 (1%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 ++ + + + L M DIS ++ + + + Sbjct: 50 RSRMHTLEVINERFARHLRSSLLNFMRRSPDISVGPVHIQQYGEFVRHLPVPANINMLHM 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 LV +++NL G+ ++ R + E+++ KR + Sbjct: 110 KPLRGTALFVFDPKLVFLVVDNLFGSDGRYHVRVEGRDFTRTEQRIIKRLLNLTLQCYAD 169 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + K NE V + + V + IP + Sbjct: 170 AWQPVFPLSFDYVRAEMHG--KLANIVAPNEVVINTTLQIEFGPVGGFLHVCIPYSMIEP 227 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + + + + +++ +V + +T+ +V+ L++G V+P Sbjct: 228 IRDLLSNPVQDEIEVDKRWVRQMSQQMQSADVELSAEFITLPSTIGEVLKLQVGDVLPIE 287 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G + Y +R+ I+ Sbjct: 288 LPTS--ITARVDGIPVMECGYGVSNERYALRVLQMISHQD 325 >gi|85711035|ref|ZP_01042095.1| flagellar motor switch protein [Idiomarina baltica OS145] gi|85694948|gb|EAQ32886.1| flagellar motor switch protein [Idiomarina baltica OS145] Length = 354 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 11/302 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 R+ + + + + M ++S Q Sbjct: 32 SEALDYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRTAEVSINGVQM 85 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF +H+ + I LV L++N G ++ R Sbjct: 86 LKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVDNFFGGDGRYHAKIEGREF 145 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + I + + + E E + + + Sbjct: 146 TPTERRIIQMLLKLIFEDYKEAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIVISSFH 203 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + ++ F + +P L + + Q+ E+ + + V + ++ Sbjct: 204 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTDMRWSKALRDEIMDVPVEMVAKL 263 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 TL++V+ + G +IP + + + ++GR N ++I+D+I Sbjct: 264 ADVDVTLREVMDFEEGDIIPLEVPDN--LTVFIEDLPTFHAKMGRSRDNIALKISDKIRR 321 Query: 307 DQ 308 + Sbjct: 322 PE 323 >gi|46579323|ref|YP_010131.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. Hildenborough] gi|120603117|ref|YP_967517.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4] gi|46448737|gb|AAS95390.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. Hildenborough] gi|120563346|gb|ABM29090.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4] gi|311233150|gb|ADP86004.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris RCH1] Length = 326 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 89/300 (29%), Gaps = 10/300 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q P R+ + + + + + V+++ Sbjct: 29 QHDDSGIVPFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAVRKRVELNPI 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S KF + S + + N I + LV L+EN G S ++ Sbjct: 83 SIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVDSRLVFALVENFFGGSGSQP-KIE 141 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + +E+ + R I + + + L + ++ V Sbjct: 142 GREFTRIEQAIVDRVIHIALDNMEESWRPVHDVHLELVR--SEINPQFAAIVPPSDVVVV 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNI 242 I + +++ S V+ +P T+ S Q + + + + V + Sbjct: 200 ITFEVELDSAIGSMVICLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLMETPVEL 259 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 R K T ++ L++G V+ ++ G + G V N +I Sbjct: 260 KVRFGETKITGNQLLRLQVGDVLLLDTDTDDMLEVTIAGVTKFWGLGGTVKANKAFQIVK 319 >gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] Length = 334 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 39/311 (12%), Positives = 99/311 (31%), Gaps = 7/311 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58 + G+S + + ++ + + + + + Sbjct: 18 VTGESQRSEVVEVDLGQVRSYDISSQERIVRGRMPTMEIVNERFARNFRIGLFNFIRRSP 77 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ N I C +LV +++ L G + Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R ST E+++ R + I + + + + Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQRSEM--QPQFANIATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ S + +P TL + S+Q + + R+ Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ ++ G I S G ++ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313 Query: 298 IRITDRINFDQ 308 IR+ + Sbjct: 314 IRVERSLRGGD 324 >gi|237731993|ref|ZP_04562474.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2] gi|226907532|gb|EEH93450.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2] Length = 349 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 40/307 (13%), Positives = 96/307 (31%), Gaps = 10/307 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + + P P R+ + + + + + + DI Sbjct: 41 ISGIAKESDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDI 94 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + + + L + S +LV ++NL G Sbjct: 95 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 154 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ R + + + N N+ Sbjct: 155 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDI 213 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLN 239 V ++ I N+ F + +P + + ++ + S N+ ++ + R+ Sbjct: 214 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 273 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L ++ LK G V+P I +G + + + G V Y +R Sbjct: 274 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 331 Query: 300 ITDRINF 306 + IN Sbjct: 332 VEHLINP 338 >gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum ferrodiazotrophum] Length = 341 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 88/301 (29%), Gaps = 9/301 (2%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K T + R+ + + +F + V+ S S + Sbjct: 36 KKTREYNLASQERVIRG------RMPTLEIVNERFARFFQITLSSTLRKAVEFSPVSTEM 89 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF I + L NF + +V L+++L G ++ R Sbjct: 90 IKFGEFIKKIPLPSNINILRLEPMKRNFLLIIDARMVYLLVDHLFGGVGRGHVKVEGRDF 149 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E ++ + + Q + + + + + E V + Sbjct: 150 SPIENRITRNILNQAIGDFEKAWAPVHHI--GVSYIRSEINPQFSAIVSPTEMVIALTYR 207 Query: 188 MTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + I+ + IP T+ Q+ I ++ + + I + Sbjct: 208 LDIDGQGRPVYICIPYSTIEPIKEKLYTGFQSDQYEVDHRWILRLRQQIDSVPIKIVAEL 267 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 K L +V+ K G +I ++ + G + +RI +R+ Sbjct: 268 GTTKARLSEVLAWKPGDMITLDQYVDDPIKITVEKALRFKARPGVYRSSRAVRIEERVFP 327 Query: 307 D 307 D Sbjct: 328 D 328 >gi|327441044|dbj|BAK17409.1| flagellar motor switch protein [Solibacillus silvestris StLB046] Length = 331 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 97/285 (34%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V I+ S F + S + + Sbjct: 49 SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + N+ ++L+ L+G + + + N L+ +E K+ + L Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRLMGGAGGSHSNVDN--LTEIETKIMTNLFERSFDNLR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P L + NE V I+ N I + IP L Sbjct: 167 EAWENVAEIDPMLV--ELEVNPQFLQMISPNETVVVISFNTIIGETTGMINICIPHVVLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q ++ S + + Q + I + T++D +T+ +G V Sbjct: 225 PIVPNLSVRYWMQTNTKEISPEQSKMLESRVKQAKLPIIAELGSSDITIEDFLTMAVGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 IP + + L ++ + G++ ++I D + + Sbjct: 285 IPLKQKIENPLTLKVGSLPKFTVQPGKLNNKMAVQIIDPLKGGDE 329 >gi|330814983|ref|YP_004358688.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3] gi|327367376|gb|AEA58732.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3] Length = 332 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 11/302 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 P + R+ + + + L M +IS + + Sbjct: 33 SGVRPYNLATQERIVRG------RMPGMEIINDRFARLLRVGIFNFMRRTAEISVSQVKV 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 K+S + + + NLV +++NL G ++ R Sbjct: 87 QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E ++ + + + + + E + + NE V + Sbjct: 147 TQTEMRIISKLLHMVFEHYTVAWKSVRPLQ--FEHVRSEMHTQFANVATPNEIVIVTQFS 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + + + +P + + S Q ++ + +++ V + + Sbjct: 205 IEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAEVELTADL 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 TT + ++ L++G V+P +G + C G Y +R+ I Sbjct: 265 AEVPTTFERILNLRVGDVLPLD--IGDAVTAKVDGVPVMECGYGIFNGQYALRVNRMIGA 322 Query: 307 DQ 308 Sbjct: 323 SD 324 >gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] Length = 334 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 94/297 (31%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + +IS + ++S Sbjct: 38 YDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGTVSVQRYSA 91 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 + F+ ++ + I C +LV +++ L G + ++ R S E+ Sbjct: 92 FLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKFQTRIEGRDFSPTEQ 151 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ R + I A + LE + +E V + + I + Sbjct: 152 RVINRLVDVICAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVSTAFQLEIGD 209 Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 ++ + + +P TL + S+Q S + R+ V + + Sbjct: 210 LSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVTLVAELARADA 269 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 T++ ++ +K G I S G I+ C+ G Y IRI + + Sbjct: 270 TVEQLLAMKPGDFIELDREP--RIQASIGGVPIFECQYGTHNSKYAIRIEECLRNPD 324 >gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] Length = 334 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 94/297 (31%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + +IS + ++S Sbjct: 38 YDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGTVSVQRYSA 91 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 + F+ ++ + I C +LV +++ L G + ++ R S E+ Sbjct: 92 FLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKFQTRIEGRDFSPTEQ 151 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ R + I A + LE + +E V + + I + Sbjct: 152 RVINRLVDVICAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVSTAFQLEIGD 209 Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 ++ + + +P TL + S+Q S + R+ V + + Sbjct: 210 LSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVTLVAELARADA 269 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 T++ ++ +K G I S G I+ C+ G Y IRI + + Sbjct: 270 TVEQLLAMKPGDFIELDREP--RIQASIGGVPIFECQYGTHNSKYAIRIEECLRNPD 324 >gi|50120652|ref|YP_049819.1| flagellar motor switch protein FliM [Pectobacterium atrosepticum SCRI1043] gi|49611178|emb|CAG74624.1| flagellar motor switch protein [Pectobacterium atrosepticum SCRI1043] Length = 337 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 95/309 (30%), Gaps = 10/309 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 P P R+ + + + + + + DI+ Sbjct: 32 TDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMSLFNLLRRSPDITVGGI 85 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + + L S +LV ++NL G ++ R Sbjct: 86 KIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGR 145 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ KR + + + + + N N+ V T Sbjct: 146 EFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTP 204 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244 ++ I ++ F + IP + + + + S + + D A++ + + Sbjct: 205 FHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVA 264 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L ++ L+ G V+P + +G + + + G + Y +R+ I Sbjct: 265 SFVDIPLRLSKILKLQPGDVLPIDKP--DKIVAHVDGVPVLTSQYGTLNGQYALRVEHLI 322 Query: 305 NFDQKSLKN 313 N SL N Sbjct: 323 NPILNSLDN 331 >gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] Length = 334 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 39/311 (12%), Positives = 100/311 (32%), Gaps = 7/311 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58 + G+S + + ++ + + + + + Sbjct: 18 VTGESQRSEVVEVDLGQVRSYDISSQERIVRGRMPTMEIVNERFARNFRIGLFNFIRRSP 77 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ N I C +LV +++ L G + Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R ST E+++ R + I + + + + Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQRSEM--QPQFANIATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ S + +P TL + S+Q + + R+ Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ ++ G I S G ++ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313 Query: 298 IRITDRINFDQ 308 IR+ + + Sbjct: 314 IRVERSLRGGE 324 >gi|114320135|ref|YP_741818.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii MLHE-1] gi|114226529|gb|ABI56328.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii MLHE-1] Length = 395 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 90/290 (31%), Gaps = 5/290 (1%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 T + + + + + + ++S + KF +H+ Sbjct: 39 FTAEERIVRGRMPTLEMINERFARLFRIGLFNMLRRTPEVSVVGVEMMKFGEYVHTLFVP 98 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 + + LV +++N G ++ R + E ++ + I Sbjct: 99 TSLNLMRVHPLRGTGLFIIDPKLVFIVVDNFFGGDGRFFVKIEGREFTPTELRVIRMLID 158 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 Q L + + + E + + +E V ++ ++ + Sbjct: 159 QAFENLEEAWNPV--MNAEFEYMHSEVNPQFANIVSPSEVVVVSKFHVELDGGGGDIHVT 216 Query: 201 IPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 +P + + + Q+ E + V + + + + +L+DV+ + Sbjct: 217 LPYTMIEPIRELLDAGVQSDRNEVDERWTRSLREEMKFAEVELSSVLTEVEVSLRDVMNM 276 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K G +IP + A ++ G N I+IT+RI + Sbjct: 277 KPGDIIPVELP--EAVKVYAEDMPVFRGRYGVRHGNTAIKITERIQPRAE 324 >gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] Length = 334 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 95/305 (31%), Gaps = 11/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + R+ + + + + +IS + Sbjct: 30 AEAGAVRNYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGT 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++S + F+ ++ + I C +LV +++ L G + ++ Sbjct: 84 VSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKFQTRIEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R S E+++ R + I A + LE + +E V + Sbjct: 144 RDFSPTEQRVINRLVDVICAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVST 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + I +++ + + +P TL + S+Q S + R+ V + Sbjct: 202 AFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVTLV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + T++ ++ +K G I S G I+ C+ G Y IRI + Sbjct: 262 AELAQADATVEQLLAMKPGDFIELDREP--RIRASIGGVPIFECQYGTHNSKYAIRIEEC 319 Query: 304 INFDQ 308 + Sbjct: 320 LRNAD 324 >gi|261340410|ref|ZP_05968268.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC 35316] gi|288317502|gb|EFC56440.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC 35316] Length = 334 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 38/305 (12%), Positives = 95/305 (31%), Gaps = 10/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + N P P R+ + + + + + + DI+ Sbjct: 28 GLAGDDNIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ + R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 261 LVANFADVSMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVE 318 Query: 302 DRINF 306 IN Sbjct: 319 HLINP 323 >gi|238025700|ref|YP_002909931.1| flagellar motor switch protein FliM [Burkholderia glumae BGR1] gi|237874894|gb|ACR27227.1| Flagellar motor switch protein FliM [Burkholderia glumae BGR1] Length = 332 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 38/306 (12%), Positives = 93/306 (30%), Gaps = 11/306 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 K P + R+ + + + L M +IS + Sbjct: 31 EQKGVRPYNLATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRTAEISVSQV 84 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + K+S + + + NLV +++NL G ++ R Sbjct: 85 KVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGR 144 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E ++ R + + + + + E + + NE V Sbjct: 145 DFTQTEMRIISRLLHLVFEHYSVAWKSVRPLQ--FEHVRSEMHTQFANVATPNEIVIVTQ 202 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ + + +P + + S Q ++ + +++ V + Sbjct: 203 FSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELTA 262 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +T + ++ L++G V+P + I +G + C G Y +R+ I Sbjct: 263 NLTEMPSTFEKILNLRVGDVLPID--VEESIIAKVDGVPVMECGYGIFNGQYALRVNRMI 320 Query: 305 NFDQKS 310 + Sbjct: 321 SASDTM 326 >gi|261821166|ref|YP_003259272.1| flagellar motor switch protein FliM [Pectobacterium wasabiae WPP163] gi|261605179|gb|ACX87665.1| flagellar motor switch protein FliM [Pectobacterium wasabiae WPP163] Length = 337 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 96/309 (31%), Gaps = 10/309 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + P P R+ + + + + + + DI+ Sbjct: 32 TDGDVKPYDPNTQRRVI------RERLQALEIINERFARQFRMALFNLLRRSPDITVGGI 85 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + + L S +LV ++NL G ++ R Sbjct: 86 KIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGR 145 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ KR + + + + + N N+ V T Sbjct: 146 EFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTP 204 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244 ++ I ++ F + IP + + + + S + + D A++ + + Sbjct: 205 FHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVA 264 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L ++ L+ G V+P + +G + + + G + Y +R+ I Sbjct: 265 NFVDIPLRLSKILKLQPGDVLPIDKP--EKIVAHVDGVPVLTSQYGTLNGQYALRVEHLI 322 Query: 305 NFDQKSLKN 313 N SL N Sbjct: 323 NPILNSLDN 331 >gi|121533750|ref|ZP_01665577.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans Nor1] gi|121307741|gb|EAX48656.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans Nor1] Length = 334 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 105/313 (33%), Gaps = 14/313 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + + + K + L + + + + V I Sbjct: 29 IKSEQKERKIKVYDFKRPDKF------SKDQIRTLYMLHENFARLINTYLSAHLRTLVHI 82 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + S + I S V S + N + + N+V +++ L G + Sbjct: 83 NVASVDQLTYEEFIRSLPNPSVISIFQMPPLKGNVILELNPNIVFAVIDRLFGGTGVAPV 142 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R L+ +E+ + +R +A++ + P + + ++ Sbjct: 143 KP--RPLTDIEEAIIRRVLAKMLEGFQEAWKQVVAVEPRIGAIET--NPQFAQIVPPSDM 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS----QNKSENQSEDLIDPFARKTY 236 V I + I + IP L ++ ++ +++ I RK Sbjct: 199 VVIITLQAKIGQAEGLINVCIPYLVLEPIMSKLTTTFWVALGTTKQVTQENITTLQRKLQ 258 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + +V + + T++D++ L +G V+ R + +E + C+ G VG Sbjct: 259 RTSVPVIVELGRATVTVQDLLDLAVGDVLQLESRFDGELSVIIGQREKFKCKPGLVGGKV 318 Query: 297 TIRITDRINFDQK 309 ++IT+ + + Sbjct: 319 AVQITEVMLKGDE 331 >gi|262276388|ref|ZP_06054197.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] gi|262220196|gb|EEY71512.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] Length = 353 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 36/308 (11%), Positives = 92/308 (29%), Gaps = 11/308 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 G S R+ + + + + + ++S Sbjct: 27 SGSEDVGAASNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMIRKTAEVS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 Q KF ++ + I LV L+EN G + Sbjct: 81 INGVQMVKFGEYQNTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAR 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ + + I + E E + Sbjct: 141 IEGREFTPTERRVIQMLLKLIFEDYKDAWAPVMRVE--FEYLDSEVNPAMANIVSPTEVI 198 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240 + ++ ++ F +++P + + + Q+ + + + + V Sbjct: 199 VVSSFHIELDGGGGDFHVVMPYSMVEPIRELLDAGIQSDKMDTDKRWSKALQDEVMDVEV 258 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ ++ +L+D++ ++ G VIP + + +LG+ N I+I Sbjct: 259 SLTAKLLETTLSLRDLMEMEAGDVIPVKMP--DACTVYIEDLPTFRGKLGQSNDNLAIKI 316 Query: 301 TDRINFDQ 308 TD++ + Sbjct: 317 TDKLKRPE 324 >gi|251789181|ref|YP_003003902.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591] gi|247537802|gb|ACT06423.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591] Length = 338 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 40/316 (12%), Positives = 98/316 (31%), Gaps = 16/316 (5%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 P P R+ + + + + + + DI+ + Sbjct: 32 QKDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 85 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L S +LV ++NL G ++ Sbjct: 86 IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 145 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R + + + + + N N+ V T Sbjct: 146 REFTHTEQRVVRRMLKLALDAYSDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIVVTT 204 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I + F + IP + + + + S+ + + + A++ + + Sbjct: 205 PFHLEIGTLTGEFSICIPFSMIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELV 264 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L V+ LK G ++P + +G + +C+ G + Y +R+ Sbjct: 265 ANFVDIPVRLSKVLKLKPGDILPIDKP--ERLVAHVDGVPVLTCQYGTLDGQYALRVEHL 322 Query: 304 INF------DQKSLKN 313 IN D++ L Sbjct: 323 INPILNSLNDEEPLNE 338 >gi|126653737|ref|ZP_01725655.1| flagellar motor switch protein M [Bacillus sp. B14905] gi|126589701|gb|EAZ83837.1| flagellar motor switch protein M [Bacillus sp. B14905] Length = 331 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 101/285 (35%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V I+ S F + S + + Sbjct: 49 SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + N+ ++L+ L+G S + + N L+ +E K+ + L Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P L + NE V I++N I + + IP L Sbjct: 167 EAWENVAEIDPILV--ELEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q ++ S + + Q + + + L T++D +T+++G V Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQVGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + +L ++ + G+ GK I+I D + + Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329 >gi|253688959|ref|YP_003018149.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755537|gb|ACT13613.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 337 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 96/309 (31%), Gaps = 10/309 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + P P R+ + + + + + + DI+ Sbjct: 32 VDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGGI 85 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + + L S +LV ++NL G ++ R Sbjct: 86 KIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGR 145 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ KR + + + + + N N+ V T Sbjct: 146 EFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTP 204 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244 ++ I ++ F + IP + + + + S + + D A++ + + Sbjct: 205 FHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVA 264 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L ++ L+ G V+P I +G + + + G + Y +R+ I Sbjct: 265 SFVDIPLRLSKILKLQPGDVLPIDKP--DKIIAHVDGVPVMTSQYGTLNGQYALRVEHLI 322 Query: 305 NFDQKSLKN 313 N SL N Sbjct: 323 NPILNSLDN 331 >gi|33592495|ref|NP_880139.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I] gi|33601558|ref|NP_889118.1| flagellar motor switch protein FliM [Bordetella bronchiseptica RB50] gi|33572141|emb|CAE41684.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I] gi|33575994|emb|CAE33074.1| flagellar motor switch protein FliM [Bordetella bronchiseptica RB50] gi|332381913|gb|AEE66760.1| flagellar motor switch protein FliM [Bordetella pertussis CS] Length = 336 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 34/310 (10%), Positives = 94/310 (30%), Gaps = 9/310 (2%) Query: 4 QSIHKNTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + R L+ + + + + + + + M + DI Sbjct: 21 GESDEKQPAGDEAGAPRAYDLSSPERVVRRRMQTLELINERFARHMRNVLLNFMRRNADI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + K++ + + + NLV ++++L G Sbjct: 81 TVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHT 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R +T E+++ +R + + K + +NE Sbjct: 141 RVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEV 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQL 238 V ++ + +P + + + E + R+ Sbjct: 199 VVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDTALEEVDQRWAQQLQRQVRSA 258 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++++ +++ +++ +K G V+P +G + C G Y + Sbjct: 259 DIDLVAEFGHIPSSIGELMRMKTGDVLPIAVP--ETVTAHVDGVPLMECGYGVFNGRYAL 316 Query: 299 RITDRINFDQ 308 R+ + IN+D Sbjct: 317 RVQNLINYDD 326 >gi|300693352|ref|YP_003749325.1| flagellar motor switching and energizing component [Ralstonia solanacearum PSI07] gi|299075389|emb|CBJ34684.1| flagellar motor switching and energizing component [Ralstonia solanacearum PSI07] Length = 335 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 91/276 (32%), Gaps = 5/276 (1%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + + + + +IS + K+S I + + + Sbjct: 50 RMPTLEIINERFARNWRMGLFNFLRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 NL+ ++++L G ++ R + VE+++ +R + + + Sbjct: 110 LRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVEGRDFTQVEQRIIQRMLQLMFDHYGKAW 169 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 E + + NE V + + +M + + + +P + Sbjct: 170 QPIYPIE--FEALRMEMHTEFANVATPNEVVVSTSFSMELGSNGGDVHVCMPYTMIEPIR 227 Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + S+ Q ++ + + +++ V + + + D++ +K+G VIP Sbjct: 228 DLLTSAIQGEALEVDKRWVRLLSQQVQTAEVELVAHLANANVQVSDILNMKVGDVIPLEL 287 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +G + C G Y +R+ +N Sbjct: 288 --DDSVTAKVDGVPVMECAYGTFNGQYALRVNRMLN 321 >gi|332305666|ref|YP_004433517.1| flagellar motor switch protein FliM [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172995|gb|AEE22249.1| flagellar motor switch protein FliM [Glaciecola agarilytica 4H-3-7+YE-5] Length = 352 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 11/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + R+ + + + + M ++S Q Sbjct: 31 DGSALEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGIQ 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF IH+ + I LV L++N G ++ R Sbjct: 85 MIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ + + I + + + + E E V + Sbjct: 145 FTPTERRIIQMLLKLIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ ++ F + +P L + + Q+ E+ + + V + T Sbjct: 203 HIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTH 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L+ ++ +K G +IP + + +LGR N ++ITD+I Sbjct: 263 MMDLTLSLQKIMDMKAGDIIPIDMP--EHITVMIEELPTFRAKLGRSRDNLALKITDKIP 320 Query: 306 F 306 Sbjct: 321 R 321 >gi|295098287|emb|CBK87377.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 334 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 38/305 (12%), Positives = 95/305 (31%), Gaps = 10/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + N P P R+ + + + + + + DI+ Sbjct: 28 GLTGDDNIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ + R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 261 LVANFADISMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVE 318 Query: 302 DRINF 306 IN Sbjct: 319 HLINP 323 >gi|311068153|ref|YP_003973076.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942] gi|310868670|gb|ADP32145.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942] Length = 332 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 38/313 (12%), Positives = 101/313 (32%), Gaps = 14/313 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + + + L F ++ + I Sbjct: 28 LKKEDSEKKVKVYDFKRALRF------SKDQIRSLTRIHDNFARLLTTHFSAQLRTYIHI 81 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S +S + I S + + + + + + +++ ++G + Sbjct: 82 SVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNPTVAYAMMDRVMGGIGISHN 141 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ + L+ +E K+ + + + P E + NE Sbjct: 142 KVDS--LTEIETKIISNLFENALGNYKEAWQSIADIEP--EMTEFEVNPQFVQMVSPNET 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V I++N I ++ L IP L Q++ + ++ Sbjct: 198 VVVISLNTQIGEISGVINLCIPHVVLEPIIPKLSVHYWMQSERNEPKPEETKSLEKRIMT 257 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + + + T+++ ++L++G I + K + + GRV + Sbjct: 258 AQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQA 317 Query: 298 IRITDR-INFDQK 309 ++I D I ++ Sbjct: 318 VQILDHDIRGEKD 330 >gi|163801852|ref|ZP_02195749.1| flagellar motor switch protein M [Vibrio sp. AND4] gi|159174360|gb|EDP59164.1| flagellar motor switch protein M [Vibrio sp. AND4] Length = 348 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 90/301 (29%), Gaps = 11/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 +NT+ R+ + + + + + ++S Q Sbjct: 31 DENTTNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF ++ + I LV L+EN G ++ R Sbjct: 85 MMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ + + + + S E E + + Sbjct: 145 FTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ ++ F +++P + + + Q+ + VN Sbjct: 203 HIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVN 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + K +L+D++ L+ G VIP E A + Y ++GR +++++ I Sbjct: 263 LLEKDISLRDLMELQPGDVIPIDMPEN--ATMFIEDLPTYRVKMGRSEDKLAVQVSEEIE 320 Query: 306 F 306 Sbjct: 321 R 321 >gi|317406219|gb|EFV86466.1| flagellar motor switch protein [Achromobacter xylosoxidans C54] Length = 335 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 34/307 (11%), Positives = 100/307 (32%), Gaps = 6/307 (1%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S ++ P L+ + + + + + + + M DI+ S Sbjct: 25 SKKESAGPNDGARAYDLSSPDRVVRRRMQTLELINERFARQMRSVLLNFMRRSADITVGS 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K++ + + + NLV ++++L G ++ Sbjct: 85 IKIQKYADFERNLPVPSNLNMVQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEG 144 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R +T E+++ +R + + + K + +NE V Sbjct: 145 RDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFDYVRSEMHT--KFASITGNNEVVVVT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNI 242 + ++ + +P + + ++ E + +R+ ++++ Sbjct: 203 SFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWSQQLSRQVRSADIDV 262 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +++++++ +K+G ++P I +G + C G Y +R+ + Sbjct: 263 VAEFARIPSSIRELMRMKVGDILPVDVP--QTVIAHVDGVPLMECGYGVFNGQYALRVQN 320 Query: 303 RINFDQK 309 D + Sbjct: 321 MFTHDTE 327 >gi|109899345|ref|YP_662600.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica T6c] gi|109701626|gb|ABG41546.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica T6c] Length = 352 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 90/296 (30%), Gaps = 11/296 (3%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 R+ + + + + M ++S Q KF Sbjct: 36 EYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGIQMIKFG 89 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 IH+ + I LV L++N G ++ R + E Sbjct: 90 EYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGREFTPTE 149 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ + + I + + + + E E V + ++ ++ Sbjct: 150 RRIIQMLLKLIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSFHIELD 207 Query: 192 NVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 F + +P L + + Q+ E+ + + V + T + Sbjct: 208 GGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTHMMDLT 267 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L+ ++ +K G +IP + + +LGR N ++ITD+I Sbjct: 268 LSLQKIMDMKAGDIIPIDMP--EHITVMIEELPTFRAKLGRSRDNLALKITDKIPR 321 >gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1] gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1] Length = 332 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 99/285 (34%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V I+ S F + S + + + Sbjct: 49 SKDQIRSLTRIHENFARILTTYFSAQLRTYVQITVVSADQVPFEEFVRSVPKMTILNIFD 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + N+ +++ ++G I ++ N L+ +E K+ + L Sbjct: 109 VPPLDGHILMEVNPNIGYAMMDRVMGGKGTGINKIEN--LTEIETKIMSNLFERAFDNLR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 S E P L + NE V I+MN TI + +IIP L Sbjct: 167 DAWSNIAEIDPMLS--EFEVNPQFLQMVSPNETVVVISMNTTIGETSGMINIIIPHVVLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q K+++ + ++ V I + T+ D + L IG V Sbjct: 225 PIIPKLSVSYWMQTKNKDIDPQETEMLEKRIKTAQVPIVAELGDSDITIDDFLMLDIGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I R + ++ + G + K ++I D + ++ Sbjct: 285 IQLNKRIDAPLTIKVGEIPKFTAQPGELNKRLAVQILDSLKGGEE 329 >gi|156933435|ref|YP_001437351.1| flagellar motor switch protein FliM [Cronobacter sakazakii ATCC BAA-894] gi|156531689|gb|ABU76515.1| hypothetical protein ESA_01253 [Cronobacter sakazakii ATCC BAA-894] Length = 334 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 92/301 (30%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + + DI+ + + Sbjct: 31 DGDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L S +LV ++NL G ++ R Sbjct: 85 IQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + + N N+ V Sbjct: 145 FTHTEQRVINRMLKLALEAYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I N+ F + +P + + ++ + S + ++ D R+ + + Sbjct: 204 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQNWRDTLVRQVQHSELELIAN 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ LK G V+P ++ +G + + + G V Y +R+ IN Sbjct: 264 FAEIPLRLSKILKLKPGDVLPIDKP--DRILVHVDGVPVLTSQYGTVNGQYALRVEHLIN 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|207728361|ref|YP_002256755.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2] gi|206591607|emb|CAQ57219.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2] Length = 335 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 37/303 (12%), Positives = 96/303 (31%), Gaps = 11/303 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q+ + R+ + + + + + +IS Sbjct: 29 QAEAAGVRTYNLGSQERIVRG------RMPTLEIINERFARNWRMGLFNFLRRNAEISVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K+S I + + + NL+ ++++L G ++ Sbjct: 83 PVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + VE+++ +R +A + + E + + NE V + Sbjct: 143 GRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIE--FEPLRMEMHTEFANVATPNEVVVS 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 +M + + + +P + + S+ Q ++ + + +++ V + Sbjct: 201 TRFSMELGSNGGDVHVCMPYTMIEPIRDLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEV 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + D++ +K+G VIP +G + C G Y +R+ Sbjct: 261 VAHLANANVHVSDILNMKVGDVIPLEL--DDSVTARVDGVPVMECAYGTFNGQYALRVNR 318 Query: 303 RIN 305 +N Sbjct: 319 MLN 321 >gi|307131596|ref|YP_003883612.1| flagellar motor switch protein fliM [Dickeya dadantii 3937] gi|306529125|gb|ADM99055.1| Flagellar motor switch protein fliM [Dickeya dadantii 3937] Length = 338 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 40/316 (12%), Positives = 99/316 (31%), Gaps = 16/316 (5%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P P R+ + + + + + + DI+ + Sbjct: 32 QKDGDVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 85 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L S +LV ++NL G ++ Sbjct: 86 IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 145 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R + + + + + N N+ V T Sbjct: 146 REFTHTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIVVTT 204 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I + F + IP + + + + S+ + + + A++ + + Sbjct: 205 PFHLEIGTLTGEFSICIPFSMIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELV 264 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L V+ LK G ++P + +G + +C+ G + Y +R+ Sbjct: 265 ANFVDIPVRLSKVLKLKPGDILPIDKP--ERLVAHVDGVPVLTCQYGTLDGQYALRVEHL 322 Query: 304 INF------DQKSLKN 313 IN D++ L Sbjct: 323 INPILNSLNDEEPLNE 338 >gi|299534775|ref|ZP_07048105.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1] gi|298729863|gb|EFI70408.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1] Length = 331 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 102/285 (35%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V I+ S F + S + + Sbjct: 49 SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + N+ ++L+ L+G S + + N L+ +E K+ + L Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P L + NE V I++N I + + IP L Sbjct: 167 EAWENVAEIDPILV--ELEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q ++ S + + Q + + + L T++D +T+++G V Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAQLPLSVELGLTDITIEDFLTMQVGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + + +L ++ + G+ GK I+I D + + Sbjct: 285 IQLDQKIEAPLLLKVGTLPKFTVQPGKKGKKLAIQIIDPLKGGDE 329 >gi|312876509|ref|ZP_07736492.1| flagellar motor switch protein FliM [Caldicellulosiruptor lactoaceticus 6A] gi|311796720|gb|EFR13066.1| flagellar motor switch protein FliM [Caldicellulosiruptor lactoaceticus 6A] Length = 329 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 97/305 (31%), Gaps = 13/305 (4%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 KN ++ K + + Y + + + V + S + Sbjct: 33 EKNIRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + +S V + S + + L +++ +LG + I ++ R+ Sbjct: 87 QLTYYEFSNSLSNPVVMGVVNFSPLKGSIVFEMAPELAFAMIDRVLGGFGKGIDKV--RT 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E L +R + Q+ + P +E + NE V + + Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIIHIRPRIEKIET--NPQFTQIVSPNETVALVTI 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243 M + + +P + ++ SE+ + +K + V + Sbjct: 203 TMKVGEAEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + T+++ + L++G V+ R+ + K + GR ++IT Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322 Query: 304 INFDQ 308 + Sbjct: 323 EEGED 327 >gi|292669771|ref|ZP_06603197.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541] gi|292648568|gb|EFF66540.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541] Length = 333 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 94/286 (32%), Gaps = 8/286 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + L + + L + +DI S + + + S V + Sbjct: 49 SKDQIRTLFMLHESFSRLLNTYLSASLRAMIDIEVMSVEQMTYQEFVQSMGNPSVIGIIA 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L N I ++ ++ + G + + +R+L+ +E + +R I + Sbjct: 109 LPPLKGNIIIEVGTDIAFAYIDRIFGGEGKPGVK--SRALTDIEAAVMRRFIDTVINYFR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S E PN E + ++ V I +++ + +V + IP L Sbjct: 167 EAWSNVIEFRPNFETMET--NPQFAQIVPPSDMVVLITIHVKMGDVEGMMNVCIPYLVLE 224 Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +S + + + + + RK + V + T+ + +TL G Sbjct: 225 PVMSKLTTSFWVASSVDKESTPEQVAELQRKIERTWVPFSVELGSVDITINEFLTLGFGD 284 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+ + + + G GK ++I+ I D Sbjct: 285 VLQLDTLAQDELVCYVGTNPKFRAHPGTAGKRMAVQISGIIEGDDD 330 >gi|227112534|ref|ZP_03826190.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 337 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 41/310 (13%), Positives = 97/310 (31%), Gaps = 10/310 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P P R+ + + + + + + DI+ + Sbjct: 31 QVDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L S +LV ++NL G ++ Sbjct: 85 IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 144 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ KR + + + + + N N+ V T Sbjct: 145 REFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTT 203 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I ++ F + IP + + + + S + + D A++ + + Sbjct: 204 PFHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELV 263 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L+ G V+P + +G + + + G + Y +R+ Sbjct: 264 ASFVDIPLRLSKILKLQPGDVLPIDKP--DKIVAHVDGVPVLTSQYGTLNGQYALRVEHL 321 Query: 304 INFDQKSLKN 313 IN SL N Sbjct: 322 INPILNSLDN 331 >gi|26248214|ref|NP_754254.1| flagellar motor switch protein FliM [Escherichia coli CFT073] gi|91211163|ref|YP_541149.1| flagellar motor switch protein FliM [Escherichia coli UTI89] gi|110642051|ref|YP_669781.1| flagellar motor switch protein FliM [Escherichia coli 536] gi|117624085|ref|YP_852998.1| flagellar motor switch protein FliM [Escherichia coli APEC O1] gi|237705904|ref|ZP_04536385.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA] gi|331642566|ref|ZP_08343701.1| flagellar motor switch protein FliM [Escherichia coli H736] gi|331647539|ref|ZP_08348631.1| flagellar motor switch protein FliM [Escherichia coli M605] gi|331653357|ref|ZP_08354362.1| flagellar motor switch protein FliM [Escherichia coli M718] gi|331673458|ref|ZP_08374226.1| flagellar motor switch protein FliM [Escherichia coli TA280] gi|331677827|ref|ZP_08378502.1| flagellar motor switch protein FliM [Escherichia coli H591] gi|332278888|ref|ZP_08391301.1| flagellar motor switch protein FliM [Shigella sp. D9] gi|26108618|gb|AAN80821.1|AE016762_74 Flagellar motor switch protein fliM [Escherichia coli CFT073] gi|91072737|gb|ABE07618.1| flagellar motor switch protein FliM [Escherichia coli UTI89] gi|110343643|gb|ABG69880.1| flagellar motor switch protein FliM [Escherichia coli 536] gi|115513209|gb|ABJ01284.1| Flagellar motor switch protein [Escherichia coli APEC O1] gi|226900661|gb|EEH86920.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA] gi|331039364|gb|EGI11584.1| flagellar motor switch protein FliM [Escherichia coli H736] gi|331043263|gb|EGI15401.1| flagellar motor switch protein FliM [Escherichia coli M605] gi|331049455|gb|EGI21527.1| flagellar motor switch protein FliM [Escherichia coli M718] gi|331069656|gb|EGI41043.1| flagellar motor switch protein FliM [Escherichia coli TA280] gi|331074287|gb|EGI45607.1| flagellar motor switch protein FliM [Escherichia coli H591] gi|332101240|gb|EGJ04586.1| flagellar motor switch protein FliM [Shigella sp. D9] Length = 349 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 45 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 98 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 217 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335 Query: 304 INF 306 IN Sbjct: 336 INP 338 >gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani DSM 16646] gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani DSM 16646] Length = 331 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 13/312 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ ++ K + K + + + L F ++ V I Sbjct: 27 IKKEANEKKIKVYDFKKPNKF------SKEQLNTLHLIHENFSRQLITFFSTQLRTLVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + +S +S I S + I + ++ ++++ LLG S E Sbjct: 81 NASSVDQMPYSEFISSIPNPSIIGIVDFQPLRGAIIIAMNVSMAFSIIDRLLGGSGEYKD 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R + +E + R +++ ++ + E P + + NE Sbjct: 141 KP--REPTEIEANILHRVYSKLVKLMQEAWQDILEIHPVFDKLET--NPQFVQLVSPNEA 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V I +N I + IP + N + E I RK Sbjct: 197 VALITINTRIGKTDGLINICIPYIVIEPVMSRLSTKIWLSNSKKESPESFIKTITRKLEN 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 +N I I K T+++ + L +G VI + + K Y +G+ + Sbjct: 257 VNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEVDVYVYDKLKYKGIMGKRNGRFA 316 Query: 298 IRITDRINFDQK 309 +RI I+ + Sbjct: 317 VRINKVISERDE 328 >gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK] gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK] Length = 348 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 92/304 (30%), Gaps = 11/304 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 S R+ + + + + + ++S Sbjct: 29 SETGISSFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 82 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 Q KF ++ + I LV L+EN G ++ R Sbjct: 83 QMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGR 142 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ + + + + S E E + + Sbjct: 143 EFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSS 200 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ ++ F +++P + + + Q+ ++ + + VN+ Sbjct: 201 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRA 260 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ +L+D++ L+ G +IP A + Y ++G+ G N ++IT ++ Sbjct: 261 KLLDVDLSLRDLMELQAGDIIPIDVP--ESATVFVEDLPTYRAKMGKSGDNIALKITQKL 318 Query: 305 NFDQ 308 Sbjct: 319 KRPD 322 >gi|300696948|ref|YP_003747609.1| flagellar motor switching and energizing component [Ralstonia solanacearum CFBP2957] gi|299073672|emb|CBJ53192.1| flagellar motor switching and energizing component [Ralstonia solanacearum CFBP2957] Length = 335 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 37/303 (12%), Positives = 96/303 (31%), Gaps = 11/303 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q+ + R+ + + + + + +IS Sbjct: 29 QAEAAGVRTYNLGSQERIVRG------RMPTLEIINERFARNWRMGLFNFLRRNAEISVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K+S I + + + NL+ ++++L G ++ Sbjct: 83 PVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + VE+++ +R +A + + E + + NE V + Sbjct: 143 GRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIE--FEPLRMEMHTEFANVATPNEVVVS 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 +M + + + +P + + S+ Q ++ + + +++ V + Sbjct: 201 TRFSMELGSNGGDVHVCMPYTMIEPIRDLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEV 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + D++ +K+G VIP +G + C G Y +R+ Sbjct: 261 VAHLANANVHVSDILNMKVGDVIPLEL--DDFVTARVDGVPVMECAYGTFNGQYALRVNR 318 Query: 303 RIN 305 +N Sbjct: 319 MLN 321 >gi|110805914|ref|YP_689434.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401] gi|110615462|gb|ABF04129.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401] Length = 349 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 45 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 98 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 217 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I NG + + + G + Y +RI Sbjct: 278 ANFADISLHLSQILKLKPGDVLPIEKP--DRIIAHVNGVPVLTSQYGTLNGQYALRIEHL 335 Query: 304 INF 306 IN Sbjct: 336 INP 338 >gi|312621580|ref|YP_004023193.1| flagellar motor switch protein flim [Caldicellulosiruptor kronotskyensis 2002] gi|312202047|gb|ADQ45374.1| flagellar motor switch protein FliM [Caldicellulosiruptor kronotskyensis 2002] Length = 329 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 98/305 (32%), Gaps = 13/305 (4%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 KN ++ K + + Y + + + V + S + Sbjct: 33 EKNVRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + +S V + S + + + +++ +LG + I ++ R+ Sbjct: 87 QLTYYEFSNSLSNPVVMGIVNFSPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E L +R + Q+ + + P LE + NE V + + Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIVDLRPRLEKIET--NPQFTQIVSPNETVALVTI 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243 M + + IP + ++ SE+ + +K + V + Sbjct: 203 AMKVGEAEGMANICIPHMVIEPIMPRLSTKFWFSTSAKESSEETKEYLQKKIERTRVTVK 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + T+++ + L++G V+ R+ + K + GR ++IT Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322 Query: 304 INFDQ 308 + Sbjct: 323 EEGED 327 >gi|283832660|ref|ZP_06352401.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC 29220] gi|291072334|gb|EFE10443.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC 29220] Length = 334 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 40/307 (13%), Positives = 96/307 (31%), Gaps = 10/307 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + + P P R+ + + + + + + DI Sbjct: 26 ISGIAKESDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + + + L + S +LV ++NL G Sbjct: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ R + + + N N+ Sbjct: 140 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDI 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLN 239 V ++ I N+ F + +P + + ++ + S N+ ++ + R+ Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 258 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L ++ LK G V+P I +G + + + G V Y +R Sbjct: 259 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 316 Query: 300 ITDRINF 306 + IN Sbjct: 317 VEHLINP 323 >gi|285018173|ref|YP_003375884.1| flagellar motor switch protein [Xanthomonas albilineans GPE PC73] gi|283473391|emb|CBA15896.1| probable flagellar motor switch protein [Xanthomonas albilineans] Length = 335 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 91/299 (30%), Gaps = 11/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 R+ + + + + D+S Sbjct: 33 EARQYDFSSQDRIIRG------RMPTLEMVNERFARLCRIGLFNLIRRSADLSVRGIDLV 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF+ +HS + I LV T+++N G ++ R + Sbjct: 87 KFNDYMHSLYVPSNLNLIKFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYPTRIEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ + + Q A L++ + E E+V ++ Sbjct: 147 PTEMRVIQLMLKQTFADLHEAWAPVMNVE--FEYLNSEVNPHFANIVTPREYVVVSRFHV 204 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 +E + +P L + + Q+ ++ E + Y V I + + Sbjct: 205 ELEGGGGEIHVTLPYSMLEPIRELLDAGIQSDRVDRDESWNIMLREQLYGSEVTISSVLA 264 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 K+ +L+++ L+IG ++P ++ L +++ E G ++IT Sbjct: 265 QKEMSLRELTRLRIGDILPIDLPKQVP--LCVENIPVFTGEFGVSQGQNAVKITATHPP 321 >gi|238755314|ref|ZP_04616657.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473] gi|238706450|gb|EEP98824.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473] Length = 334 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 87/301 (28%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + DI+ + Sbjct: 31 DSDVKPYDPTTQRRVV------RERLHALEIINERFARHFRMGLFNLLRRSPDITVGPIK 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L +LV ++NL G ++ R Sbjct: 85 IQPYHEFARNLPVPTNLNLVHLKPLRGTALFVFEPSLVFIAVDNLFGGDGRFPTKVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + I N N+ V T Sbjct: 145 FTHTEQRVITRMLRLALDAYRDAWGAIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I ++ F + IP + + + + S + + + ++ + + Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSNWRETLVKQVQHSELELVAN 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ LK G V+P I +G + + + G + Y +R+ IN Sbjct: 264 FAEIPLRLSQILKLKPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32] gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32] Length = 347 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 38/304 (12%), Positives = 93/304 (30%), Gaps = 11/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ NT R+ + + + + + ++S Sbjct: 28 ETESDNTVNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSIN 81 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 Q KF ++ + I LV L+EN G ++ Sbjct: 82 GVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIE 141 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + + + S E E + Sbjct: 142 GREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVV 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 + ++ ++ F +++P + + + Q+ + + VN Sbjct: 200 SSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALRDEIMDVPVNF 259 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + +L+D++ L+ G VIP A + Y ++GR G+ ++I++ Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYRVKMGRSGEKLAVQISE 317 Query: 303 RINF 306 +I Sbjct: 318 KIER 321 >gi|218549270|ref|YP_002383061.1| flagellar motor switch protein FliM [Escherichia fergusonii ATCC 35469] gi|218356811|emb|CAQ89439.1| flagellar motor switching and energizing component [Escherichia fergusonii ATCC 35469] gi|324114212|gb|EGC08185.1| flagellar motor switch protein FliM [Escherichia fergusonii B253] gi|325497687|gb|EGC95546.1| flagellar motor switch protein FliM [Escherichia fergusonii ECD227] Length = 334 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 39/307 (12%), Positives = 94/307 (30%), Gaps = 10/307 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + + P P R+ + + + + + + DI Sbjct: 26 ISGITNESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + + + L + S LV ++NL G Sbjct: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPALVFIAVDNLFGGDGRFPT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ R + + N N+ Sbjct: 140 KVEGREFTHTEQRVINRMLKLALEGYRDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDI 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLN 239 V ++ I N+ F + +P + + ++ + S ++ ++ + R+ Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRNNLVRQVQHSQ 258 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L ++ LK G V+P I +G + + + G + Y +R Sbjct: 259 LELVANFAEISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALR 316 Query: 300 ITDRINF 306 I IN Sbjct: 317 IEHLINP 323 >gi|293607830|ref|ZP_06690150.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC 43553] gi|292813773|gb|EFF72934.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC 43553] Length = 335 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 96/304 (31%), Gaps = 12/304 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 R+ + + + + + + + M DI+ S + Sbjct: 34 DGARAYDLSSPERVV------RRRMQTLELINERFARHMRNVLLNFMRRSADITVGSIKI 87 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 K++ + + + NLV ++++L G ++ R Sbjct: 88 QKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDF 147 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 +T E+++ +R + + K + +NE V + + Sbjct: 148 TTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEVVVVTSFH 205 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTR 245 + + +P + + ++ E + +R+ ++++ Sbjct: 206 IEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWSQQLSRQVRSADIDVVAE 265 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +++++++ LK+G V+P I + +G + C G Y +R+ + Sbjct: 266 FARIPSSIRELMHLKVGDVLPVDVP--ETIIANVDGVPLMECGYGVFNGQYALRVQNMFT 323 Query: 306 FDQK 309 +D Sbjct: 324 YDTD 327 >gi|312792659|ref|YP_004025582.1| flagellar motor switch protein flim [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179799|gb|ADQ39969.1| flagellar motor switch protein FliM [Caldicellulosiruptor kristjanssonii 177R1B] Length = 329 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 97/305 (31%), Gaps = 13/305 (4%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 KN ++ K + + Y + + + V + S + Sbjct: 33 EKNIRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + +S V + S + + L +++ +LG + I ++ R+ Sbjct: 87 QLTYYEFSNSLSNPVVMGVVNFSPLKGSIVFEMAPELAFAMIDRVLGGFGKGIDKV--RT 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E L +R + Q+ + P +E + NE V + + Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIIHIRPRIEKIET--NPQFTQIVSPNETVALVTI 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243 M + + +P + ++ SE+ + +K + V + Sbjct: 203 AMKVGEAEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + T+++ + L++G V+ R+ + K + GR ++IT Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322 Query: 304 INFDQ 308 + Sbjct: 323 EEGED 327 >gi|308068664|ref|YP_003870269.1| flagellar motor switch protein fliM [Paenibacillus polymyxa E681] gi|305857943|gb|ADM69731.1| Flagellar motor switch protein fliM [Paenibacillus polymyxa E681] Length = 331 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 43/316 (13%), Positives = 106/316 (33%), Gaps = 13/316 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + + ++L F ++ V I Sbjct: 26 LKKEDTQKKVRAYDFKRALRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + I S + + + + N+ +L+ LLG + Sbjct: 80 NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRLLGGTGSAPS 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ +L+ +E + +R ++ L + T + P LE + NE Sbjct: 140 KVA--ALTEIETTIMERIFSRTFDSLQEAWKTVLDIEPRLEAMET--NPQFMQIVSPNET 195 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 + I+++ I + L IP L ++ ++++ + ID + + Sbjct: 196 IALISLSTKIGDTTGMINLCIPHVVLEPIMARLSTHQWFTSEKKSRAPEEIDALRLRVTK 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + I + + + + + L +G VI K + K + G V Sbjct: 256 AELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGLSIRVGEKLKFMGSPGMVRDRVA 315 Query: 298 IRITDRINFDQKSLKN 313 ++I + +N + + Sbjct: 316 VQIDEIVNEGVEEIDE 331 >gi|114562367|ref|YP_749880.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB 400] gi|114333660|gb|ABI71042.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB 400] Length = 342 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + + L M ++S Q Sbjct: 31 DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + S I LV L++N G ++ R + Sbjct: 85 KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + I + + + E E V + ++ Sbjct: 145 PTERRIVQLLLKIIFEDYKEAWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVINSFHI 202 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ F + +P + + + Q+ ++ + + V D + Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALRDEIMDVQVGFDVNVV 262 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + TL+DV+ K G +IP ++ G Y C++G+ N ++I+++I Sbjct: 263 EHEVTLRDVMGFKAGDIIPIDLP--EHIMMRIEGLPTYRCKMGKSRDNLALKISEKIPRP 320 Query: 308 Q 308 + Sbjct: 321 E 321 >gi|271500079|ref|YP_003333104.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586] gi|270343634|gb|ACZ76399.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586] Length = 338 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 40/316 (12%), Positives = 99/316 (31%), Gaps = 16/316 (5%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P P R+ + + + + + + DI+ + Sbjct: 32 QKDGDVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 85 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L S +LV ++NL G ++ Sbjct: 86 IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 145 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R + + + + + N N+ V T Sbjct: 146 REFTHTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIVVTT 204 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I + F + IP + + + + S+ + + + A++ + + Sbjct: 205 PFHLEIGTLTGEFSICIPFSMIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELV 264 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L V+ LK G ++P + +G + +C+ G + Y +R+ Sbjct: 265 ANFVDIPVRLSKVLKLKPGDILPIDKP--ERLVAHVDGVPVLTCQYGTLDGQYALRVEHL 322 Query: 304 INF------DQKSLKN 313 IN D++ L Sbjct: 323 INPILNSLNDEEPLNE 338 >gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus C3-41] gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41] Length = 331 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 101/285 (35%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V I+ S F + S + + Sbjct: 49 SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + N+ ++L+ ++G S + + N L+ +E K+ + L Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRIMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P L + NE V I++N I + + IP L Sbjct: 167 EAWENVAEIDPILV--ELEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q ++ S + + Q + + + L T++D +T++IG V Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQIGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + +L ++ + G+ GK I+I D + + Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329 >gi|222530127|ref|YP_002574009.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii DSM 6725] gi|222456974|gb|ACM61236.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii DSM 6725] Length = 329 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 98/305 (32%), Gaps = 13/305 (4%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 KN ++ K + + Y + + + V + S + Sbjct: 33 EKNVRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDILSVE 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + +S V + S + + + +++ +LG + I ++ R+ Sbjct: 87 QLTYYEFSNSLSNPVVMGIVNFSPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E L +R + Q+ + + P LE + NE V + + Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIVDLRPRLEKIET--NPQFTQIVSPNETVALVTI 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243 M + + +P + ++ SE+ + +K + V + Sbjct: 203 AMKVGEAEGMANICLPHMVIEPIMPRLSTKFWFSTSAKESSEETKEYLQKKIERTRVTVK 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + T+++ + L++G V+ R+ + K + GR ++IT Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322 Query: 304 INFDQ 308 + Sbjct: 323 EEGED 327 >gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9] gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium profundum SS9] Length = 348 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 92/303 (30%), Gaps = 11/303 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + R+ + + + + + ++S Q Sbjct: 30 ETGITSFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 83 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF ++ + I LV L+EN G ++ R Sbjct: 84 MIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGRE 143 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ + + + + S E E + + Sbjct: 144 FTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSSF 201 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ ++ F +++P + + + Q+ ++ + + VN+ + Sbjct: 202 HIELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAK 261 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L+D++ L+ G +IP A + Y ++G+ G N ++IT ++ Sbjct: 262 LLDVDLSLRDLMELQAGDIIPIDVP--ESATVFVEDLPTYRAKMGKSGDNIALKITQKLK 319 Query: 306 FDQ 308 Sbjct: 320 RPD 322 >gi|146296292|ref|YP_001180063.1| flagellar motor switch protein FliM [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409868|gb|ABP66872.1| flagellar motor switch protein FliM [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 329 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 99/293 (33%), Gaps = 8/293 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + Y + + + V + S + + +S Sbjct: 40 DFKRPSKFAKDHLRTLQIIFENYSRIVTTFLSGYLRTVVQMDVISVEQLTYYEFSNSLSN 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 V + + + S + +++ +LG + I ++ R+ + +E L +R + Sbjct: 100 PVVMGIVNFAPLKGSIVFEMSPEIAFAMIDRVLGGFGKGIDKI--RTFTEIELALIERLL 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 Q+ + + P LE + NE V + ++M + V + Sbjct: 158 QQLINYFQEAWENIVDLHPKLEKIET--NPQFTQIVSPNETVALVTIDMKVGEVEGMVNI 215 Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +P + ++ SE+ + RK + V I + K T+++ Sbjct: 216 CLPHMVIEPIMPRLSTKYWFSTSAKETSEETKEYLQRKIEKTKVTIRAILGRTKITVREF 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + L++G VI R+ + K + GR I++T R+ + + Sbjct: 276 LELQVGDVIRLDRRKNQEIEVFVGDKLKFYGVPGRKEGRVAIKVT-RVEKEDE 327 >gi|281601385|gb|ADA74369.1| Flagellar motor switch protein FliM [Shigella flexneri 2002017] Length = 349 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 45 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 98 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 217 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335 Query: 304 INF 306 IN Sbjct: 336 INP 338 >gi|227328351|ref|ZP_03832375.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 337 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 96/308 (31%), Gaps = 10/308 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P P R+ + + + + + + DI+ + + Sbjct: 33 DGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIK 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L S +LV ++NL G ++ R Sbjct: 87 IQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ KR + + + + + N N+ V T Sbjct: 147 FTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTPF 205 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I ++ F + IP + + + + S + + D A++ + + Sbjct: 206 HVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVAS 265 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ L+ G V+P + +G + + + G + Y +R+ IN Sbjct: 266 FVDIPLRLSKILKLQPGDVLPIDKP--DKIVAHVDGVPVLTSQYGTLNGQYALRVEHLIN 323 Query: 306 FDQKSLKN 313 SL N Sbjct: 324 PILNSLDN 331 >gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus YK9] gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus YK9] Length = 333 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 39/312 (12%), Positives = 103/312 (33%), Gaps = 13/312 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + + ++L F ++ V I Sbjct: 27 LKKEDTQKKVRAYDFKRAVRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + I S + + + + N+ +L+ LLG Sbjct: 81 SVVDVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVHPNVAYAMLDRLLGGQGTAPS 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ +L+ +E + +R ++ L + T + SP LE + NE Sbjct: 141 KMN--ALTEIEMTVLERIFSRAFESLQEAWKTVIDISPKLEALET--NPQFMQIVSPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 + I+++ I + L IP + ++ +++S + ++ ++ + Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVIEPIMPKLSVHHWFVSQKKSRSPEEVEVLEQRVNR 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + I + + + + L G VI + K + G + Sbjct: 257 AQLPIAVELGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNKIKFIGSPGSIKDRVA 316 Query: 298 IRITDRINFDQK 309 +++ + ++ + Sbjct: 317 VQVDEIVSEGVE 328 >gi|160876170|ref|YP_001555486.1| flagellar motor switch protein FliM [Shewanella baltica OS195] gi|160861692|gb|ABX50226.1| flagellar motor switch protein FliM [Shewanella baltica OS195] gi|315268366|gb|ADT95219.1| flagellar motor switch protein FliM [Shewanella baltica OS678] Length = 342 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 11/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 ++ ++ R+ + + + L M ++S Sbjct: 27 AVGEDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 80 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF +H+ + S I LV L++N G ++ Sbjct: 81 VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 140 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + I + + + E V Sbjct: 141 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 198 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 + ++ ++ F + +P + + + Q+ ++ + + V D Sbjct: 199 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 258 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 I + TLKDV+ K G +IP ++ Y C++GR N ++I ++ Sbjct: 259 ANIVEHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIHEK 316 Query: 304 INFDQ 308 I + Sbjct: 317 IPRPE 321 >gi|157145261|ref|YP_001452580.1| flagellar motor switch protein FliM [Citrobacter koseri ATCC BAA-895] gi|157082466|gb|ABV12144.1| hypothetical protein CKO_00998 [Citrobacter koseri ATCC BAA-895] Length = 334 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 94/305 (30%), Gaps = 10/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + P P R+ + + + + + + DI+ Sbjct: 28 GGVGDNDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ D R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ LK G V+P I +G + + + G V Y +R+ Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318 Query: 302 DRINF 306 IN Sbjct: 319 HLINP 323 >gi|16078694|ref|NP_389513.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. 168] gi|221309509|ref|ZP_03591356.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. 168] gi|221313833|ref|ZP_03595638.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318756|ref|ZP_03600050.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. JH642] gi|221323028|ref|ZP_03604322.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. SMY] gi|296330846|ref|ZP_06873321.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674364|ref|YP_003866036.1| flagellar motor switching and energizing protein [Bacillus subtilis subsp. spizizenii str. W23] gi|321315398|ref|YP_004207685.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5] gi|120344|sp|P23453|FLIM_BACSU RecName: Full=Flagellar motor switch protein FliM gi|142922|gb|AAA22446.1| flagellar switch protein [Bacillus subtilis] gi|2634003|emb|CAB13504.1| flagellar motor switching and energizing component [Bacillus subtilis subsp. subtilis str. 168] gi|291484184|dbj|BAI85259.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. natto BEST195] gi|296151851|gb|EFG92725.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412608|gb|ADM37727.1| flagellar motor switching and energizing component [Bacillus subtilis subsp. spizizenii str. W23] gi|320021672|gb|ADV96658.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5] Length = 332 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 96/286 (33%), Gaps = 8/286 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ + IS +S + I S + + Sbjct: 49 SKDQIRSLTRIHDNFARLLTTHFSAQLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFD 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + T+++ ++G + ++ + L+ +E K+ Sbjct: 109 VHPMEGRIMMEVNPTIAYTMMDRVMGGIGISHNKVDS--LTEIETKIISNLFENALGNYK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P E + NE V I++N I ++ L IP L Sbjct: 167 EAWQSIADIEP--EMTEFEVNPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPHIVLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q+ + ++ + + + + T+++ ++L++G Sbjct: 225 PLIPKLSVHYWMQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDC 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309 I + K + + GRV + ++I D I +Q Sbjct: 285 ITLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQAVQILDHDIRGEQD 330 >gi|17548599|ref|NP_521939.1| flagellar motor switch protein FliM [Ralstonia solanacearum GMI1000] gi|17430847|emb|CAD17529.1| probable flagellar motor switch protein flim [Ralstonia solanacearum GMI1000] Length = 335 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 90/276 (32%), Gaps = 5/276 (1%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + + + + +IS + K+S I + + + Sbjct: 50 RMPTLEIINERFARNWRMGLFNFLRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 NL+ ++++L G ++ R + VE+++ +R + + + Sbjct: 110 LRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAW 169 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 E + + NE V + +M + + + +P + Sbjct: 170 QPIYPIE--FEPLRMEMHTEFANVATPNEVVVSTRFSMELGSNGGDVHVCMPYTMIEPIR 227 Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + S+ Q ++ + + +++ V + + + D++ +K+G V+P Sbjct: 228 DLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL 287 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +G + C G Y +R+ +N Sbjct: 288 --DDSVTARVDGVPVMECAYGTFNGQYALRVNRMLN 321 >gi|260776477|ref|ZP_05885372.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC BAA-450] gi|260607700|gb|EEX33965.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC BAA-450] Length = 351 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 35/307 (11%), Positives = 93/307 (30%), Gaps = 11/307 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + R+ + + + + + ++S Sbjct: 29 GAAADPSAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSI 82 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF ++ + I LV L+EN G ++ Sbjct: 83 NGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARI 142 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ + + + + S E E + Sbjct: 143 EGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241 + ++ ++ F +++P + + + Q+ + + VN Sbjct: 201 VSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVN 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + +L+D++ L+ G +IP E A + + ++GR G+ ++++ Sbjct: 261 FRVNLLEQDISLRDLMELQPGDIIPITMPEN--ATMFVEELPTFRVKMGRSGEQLAVQVS 318 Query: 302 DRINFDQ 308 ++I Sbjct: 319 EKIKRPD 325 >gi|311279113|ref|YP_003941344.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1] gi|308748308|gb|ADO48060.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1] Length = 334 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 37/305 (12%), Positives = 93/305 (30%), Gaps = 10/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + P P R+ + + + + + + DI+ Sbjct: 28 GAGGETDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALEAYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ + R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRSEDQNWRENLVRQVQHSELE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 261 LVANFADISLRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVE 318 Query: 302 DRINF 306 IN Sbjct: 319 HLINP 323 >gi|238927453|ref|ZP_04659213.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC 43531] gi|238884735|gb|EEQ48373.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC 43531] Length = 333 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 94/286 (32%), Gaps = 8/286 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + L + + L + +DI +S + + + S V + Sbjct: 49 SKDQIRTLFMLHESFSRLLNTYLSASLRTMIDIDVSSVEQVTYQEFVQSMANPSVIGILA 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L I + + ++ + G + R L+ +E + +R I + Sbjct: 109 LPPLKGKIIIEINPGIAFAYIDRIFGGEGRPAVKT--RVLTDIEMAVMRRFIELATNYFR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S E PN E + N+ V I +++ + +V + IP L Sbjct: 167 EAWSNVVEFRPNFETMET--NSQFAQIVPPNDMVVLITIHIKMGDVDGMMNICIPYLVLE 224 Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +S + S + ++ RK + +V ++ + T+ + +TL G Sbjct: 225 PVMSKLTTSFWVAASMDRESSPEQVEELQRKIERTSVPFTVQLGEIEMTINEFLTLGFGD 284 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+ K + + G GK ++I+ I + Sbjct: 285 VLQLDTLTKDELVCYVGSNPKFLARPGTAGKRMAVQISGVIEGEDN 330 >gi|310641555|ref|YP_003946313.1| heat shock protein hslvu, atpase subunit hslu [Paenibacillus polymyxa SC2] gi|309246505|gb|ADO56072.1| Heat shock protein HslVU, ATPase subunit HslU [Paenibacillus polymyxa SC2] Length = 332 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 43/316 (13%), Positives = 106/316 (33%), Gaps = 13/316 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + + ++L F ++ V I Sbjct: 27 LKKEETQKKVRAYDFKRALRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + I S + + + + N+ +L+ LLG + Sbjct: 81 NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRLLGGTGSAPT 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ +L+ +E + +R ++ L + T + P LE + NE Sbjct: 141 KVT--ALTEIETTIMERIFSRTFDSLQEAWKTVLDIEPRLEAMET--NPQFMQIVSPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 + I+++ I + L IP L ++ ++++ + ID + + Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVLEPIMARLSTHQWFTSEKKSRAPEEIDALRLRVTK 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + I + + + + + L +G VI K + K + G V Sbjct: 257 AELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGLSIRVGEKLKFMGSPGMVRDRVA 316 Query: 298 IRITDRINFDQKSLKN 313 ++I + +N + + Sbjct: 317 VQIDEIVNEGVEEIDE 332 >gi|163750543|ref|ZP_02157781.1| flagellar motor switch protein [Shewanella benthica KT99] gi|161329698|gb|EDQ00687.1| flagellar motor switch protein [Shewanella benthica KT99] Length = 348 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 11/302 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 R+ + + + L M ++S Q Sbjct: 36 SEARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQM 89 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF +H+ + S I LV L++N G ++ R Sbjct: 90 IKFGEYVHTLFVPTSLNMVKFSPLKGTGLITMEARLVFILVDNFFGGDGRFHAKIEGREF 149 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + I + + + E E V + + Sbjct: 150 TPTERRIVQLLLKIIFEDYKEAWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVVSSFH 207 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + ++ F + +P + + + Q+ +++ + + + V ID I Sbjct: 208 IEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDKRWSMALKDEIMDIKVGIDATI 267 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ LKDV+ + G +IP +L Y C+LG+ N +RI ++I Sbjct: 268 VDQEIALKDVMKFRAGDIIPVDLP--EHIVLRVEDLPTYRCKLGKSRDNLALRIIEKIPR 325 Query: 307 DQ 308 + Sbjct: 326 PK 327 >gi|83747640|ref|ZP_00944676.1| FliM [Ralstonia solanacearum UW551] gi|207739721|ref|YP_002258114.1| flagellar motor switch protein flim [Ralstonia solanacearum IPO1609] gi|9438185|gb|AAF87587.1|AF283286_1 flagellar motor switch [Ralstonia solanacearum] gi|83725692|gb|EAP72834.1| FliM [Ralstonia solanacearum UW551] gi|206593103|emb|CAQ60009.1| flagellar motor switch protein flim [Ralstonia solanacearum IPO1609] Length = 335 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 96/303 (31%), Gaps = 11/303 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q+ + R+ + + + + + +IS Sbjct: 29 QAEAAGVRTYNLGSQERIVRG------RMPTLEIINERFARNWRMGLFNFLRRNAEISVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K+S I + + + NL+ ++++L G ++ Sbjct: 83 PVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + VE+++ +R +A + + E + + NE V + Sbjct: 143 GRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIE--FEPLRMEMHTEFANVATPNEVVVS 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 +M + + + +P + + S+ Q ++ + + +++ V + Sbjct: 201 TRFSMELGSNGGDVHVCMPYTMIEPIRDLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEV 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + D++ +K+G V+P +G + C G Y +R+ Sbjct: 261 VAHLANANVHVSDILNMKVGDVVPLEL--DDFVTARVDGVPVMECAYGTFNGQYALRVNR 318 Query: 303 RIN 305 +N Sbjct: 319 MLN 321 >gi|226313058|ref|YP_002772952.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC 100599] gi|226096006|dbj|BAH44448.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC 100599] Length = 331 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 41/312 (13%), Positives = 94/312 (30%), Gaps = 13/312 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + + R K + + + Y + L F ++ V I Sbjct: 27 LKKEETERKVKVYDFKRALRF------SKDQIRGLTRIHENYARLLTTYFSAQLRTFVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + S + I S + + + + + N+ T+L+ LLG Sbjct: 81 TVASVDQLPYDEFIRSIPKMTILNIFEAPPLEGRMVLEVNPNIAYTMLDRLLGGQGAIPE 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ +L+ +E + +R + ++ E P E + NE Sbjct: 141 KMG--ALTEIETTVMERVFGKALDTFHEAWKQIIELDPYQEGLEM--NPQFMQIVSPNEI 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V I+ + I + L +P L + + + E+ + Sbjct: 197 VVVISFSTKIGDTTGMINLCLPHVVLEPIMTKLSGQYWFSKQKKTRDEEERLRVEERVKV 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + I + T+ D + L+ G VI + + + G Sbjct: 257 AKLPIVAEMGTATITVGDFLQLQKGDVIQLDQSIDNKLKIKVGNHLKFLGQPGTHKGRVA 316 Query: 298 IRITDRINFDQK 309 ++I + I ++ Sbjct: 317 VQIDEVIEEGEE 328 >gi|312126831|ref|YP_003991705.1| flagellar motor switch protein flim [Caldicellulosiruptor hydrothermalis 108] gi|311776850|gb|ADQ06336.1| flagellar motor switch protein FliM [Caldicellulosiruptor hydrothermalis 108] Length = 329 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 99/305 (32%), Gaps = 13/305 (4%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 KN ++ K + + Y + + + V + S + Sbjct: 33 EKNIRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + +S V + S + + + +++ +LG + I ++ R+ Sbjct: 87 QLTYYEFSNSLSNPVVMGIVNFSPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E L +R + Q+ + + P LE + NE V + + Sbjct: 145 FTEIELVLIERLLQQLINYFQEAWENIVDLRPRLEKIET--NPQFTQIVSPNETVALVTI 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243 M + V + +P + ++ SE+ + +K + V + Sbjct: 203 AMKVGEVEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + T+++ + L++G V+ R+ + K + GR ++IT Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322 Query: 304 INFDQ 308 + Sbjct: 323 EEGED 327 >gi|217972623|ref|YP_002357374.1| flagellar motor switch protein FliM [Shewanella baltica OS223] gi|217497758|gb|ACK45951.1| flagellar motor switch protein FliM [Shewanella baltica OS223] Length = 342 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 11/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 ++ ++ R+ + + + L M ++S Sbjct: 27 AVGEDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 80 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF +H+ + S I LV L++N G ++ Sbjct: 81 VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 140 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + I + + + E V Sbjct: 141 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 198 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 + ++ ++ F + +P + + + Q+ ++ + + V D Sbjct: 199 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 258 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 I + TLKDV+ K G +IP ++ Y C++GR N ++I ++ Sbjct: 259 ANIVEHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIHEK 316 Query: 304 INFDQ 308 I + Sbjct: 317 IPRPE 321 >gi|163856451|ref|YP_001630749.1| flagellar motor switch protein FliM [Bordetella petrii DSM 12804] gi|163260179|emb|CAP42481.1| flagellar motor switch protein FliM [Bordetella petrii] Length = 335 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 36/310 (11%), Positives = 101/310 (32%), Gaps = 12/310 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 R ++ + R+ + + + + + L + M + DI+ Sbjct: 28 RDEADARGARAYDLSSPDRVV------RRRMQTLELINERFARQLRHLLLNFMRRNADIT 81 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 S + K++ + + + +LV ++++L G + Sbjct: 82 VGSIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPSLVFLVIDSLFGGDGRYHTR 141 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R +T E+++ +R + + K + +NE V Sbjct: 142 VEGRDFTTTEQRIIRRLLNLTLESYGKSWEAVYPIEFEYVRSEMHT--KFASITGNNEVV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLN 239 + ++ + +P + + ++ E + +R+ + Sbjct: 200 VVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWTHQLSRQVRSAD 259 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V++ +++++++ LK+G V+P I + NG + C G Y +R Sbjct: 260 VDLTAEFASIPSSIRELLRLKVGDVLPIEVP--ETVIANVNGVPLMECSYGVFNGQYALR 317 Query: 300 ITDRINFDQK 309 + + ++ Sbjct: 318 VQNLFTYESD 327 >gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] Length = 331 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 101/279 (36%), Gaps = 5/279 (1%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + + L + +IS Q ++S + F+ ++ Sbjct: 50 RMPTMEVVNERFARNLRISLFNFIRRSPEISVGPVQVQRYSAFLRELAVPTSFNIMAVRP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 N I C +L+ +++ L G + ++ R S E+++ R + IS + Sbjct: 110 LRGNGMIVCEPSLIFGVIDTLYGGIGKFQSRIEGRDFSATEQRIINRLVDVISDEYKKAW 169 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 LE + +E V + + + I ++ + IP TL Sbjct: 170 RGIYPLE--LEYQRSEMQPQFANIATPSEIVVSSSFQLEIGEMSGTIHFCIPYATLEPIR 227 Query: 211 LIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + S+Q S ++ R+ +V + + TT+++++ +K+G I Sbjct: 228 DVLYSSTQGDSMEVDRRWVNVLTREIQAADVTLVAELARANTTVEELLAMKVGDFIELER 287 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + A +S G ++ C+ G Y IRI + + Sbjct: 288 QPRIEATIS--GVPVFECQYGTHNAKYAIRIERSLRGND 324 >gi|161502902|ref|YP_001570014.1| flagellar motor switch protein FliM [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864249|gb|ABX20872.1| hypothetical protein SARI_00961 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 334 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + P P R+ + + + + + + DI+ Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ D R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ LK G V+P I +G + + + G V Y +R+ Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318 Query: 302 DRINF 306 IN Sbjct: 319 HLINP 323 >gi|16760920|ref|NP_456537.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141388|ref|NP_804730.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213424998|ref|ZP_03357748.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584776|ref|ZP_03366602.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213855271|ref|ZP_03383511.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829468|ref|ZP_06547080.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298898|pir||AI0752 flagellar motor switch protein FliM [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503217|emb|CAD05724.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi] gi|29137015|gb|AAO68579.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 334 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + P P R+ + + + + + + DI+ Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ D R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ LK G V+P I +G + + + G V Y +R+ Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318 Query: 302 DRINF 306 IN Sbjct: 319 HLINP 323 >gi|302872559|ref|YP_003841195.1| flagellar motor switch protein FliM [Caldicellulosiruptor obsidiansis OB47] gi|302575418|gb|ADL43209.1| flagellar motor switch protein FliM [Caldicellulosiruptor obsidiansis OB47] Length = 329 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 99/305 (32%), Gaps = 13/305 (4%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 KN ++ K + + Y + + + V + S + Sbjct: 33 EKNVRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTIVQMDVLSVE 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + +S V + + + + + +++ +LG + I ++ R+ Sbjct: 87 QLTYYEFSNSLSNPVVMGIVNFTPLKGSIVYEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E L +R + Q+ + E P LE + NE + + + Sbjct: 145 FTEIELALIERLLQQLVNYFQEAWENIVELRPRLEKIET--NPQFTQIVSPNETIALVTI 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243 M + V + +P + ++ SE+ + +K + V + Sbjct: 203 AMKVGEVEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + T+++ + L++G V+ R+ + K + GR ++IT Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322 Query: 304 INFDQ 308 + Sbjct: 323 EEGED 327 >gi|308173594|ref|YP_003920299.1| flagellar motor switching and energizing component [Bacillus amyloliquefaciens DSM 7] gi|307606458|emb|CBI42829.1| flagellar motor switching and energizing component [Bacillus amyloliquefaciens DSM 7] gi|328553474|gb|AEB23966.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens TA208] gi|328911735|gb|AEB63331.1| flagellar motor switching and energizing component [Bacillus amyloliquefaciens LL3] Length = 332 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 93/286 (32%), Gaps = 8/286 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F K+ + IS +S + I S + + Sbjct: 49 SKDQIRSLTRIHDNFARLLTTHFSAKLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFD 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + +L+ ++G T + N L+ +E + Sbjct: 109 VHPMEGRIMMEVNPTIAYAMLDRVMGGIGITHNKADN--LTEIETNIISNLFENALGNYK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P E + NE V I++N I ++ L IP L Sbjct: 167 EAWQSIADIDP--EMTEFEVNPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPHVVLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q+ + ++ + + + + T+++ ++L++G Sbjct: 225 PIIPKLSVHYWMQSDRNEAKPEETKSLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDC 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309 I + K + + GRV + ++I D I +Q Sbjct: 285 ITLDKSVTDPLTVLVGNKPKFLGQAGRVNRRQAVQILDHDIRGEQD 330 >gi|229544404|ref|ZP_04433462.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1] gi|229324889|gb|EEN90566.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1] Length = 333 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 7/280 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L ++ V IS S + I S + + + Sbjct: 48 SKDQIRSLTRIHENFSRILTTFLSAQLRTYVQISVASADQIPYEEFIRSIPKMTLLTVYE 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + N+ T+++ +LG E+I ++ L+ +EKK+ R Q L Sbjct: 108 VPPLDGNIIMEINPNIAYTMMDRVLGGYGESINKIDK--LTEIEKKIMTRIFDQTIDQLK 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S E +P L + NE V I++N TI + + L +PQ L Sbjct: 166 EAWSEIIEINPFL--TELEVNPQFLQMISPNETVVVISLNTTIGDTSGMINLCLPQVVLD 223 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q+ + + I + V + + ++D + L+IG Sbjct: 224 PMMPKLSGHYWMQHAGKEPDPNNIRLLEEGIKEAKVPLTAELGTATIKIEDFLNLEIGDC 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I + ++ + + + G+ G ++I D I Sbjct: 284 IRLNQTIEEPLVVKVDKIPKFIGQPGKQGTKMAVQILDII 323 >gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36] gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36] Length = 350 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 93/294 (31%), Gaps = 11/294 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + M ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSINGVQMLKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +H+ + + LV L+EN G ++ R + E+ Sbjct: 91 YVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHAKIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + ++ + ++ E E V + ++ ++ Sbjct: 151 RIIQMLLKIVFEDYHEAWAPVMDAE--FEYLDSEVNPAMANIVSPTEVVVVSSFHIELDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F + +P L + + Q+ E+ E + + V + T++ + Sbjct: 209 GGGDFHITMPYSMLEPIRELLDAGVQSDKEDTDERWSSALQEEILDVPVELSTKLLETEL 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 T+ ++ L++G +IP + Y +LGR N ++I+ ++ Sbjct: 269 TIGQIMELRVGDIIPIEMP--EELTVFIEDLPSYKAKLGRNKDNVAVKISRKLK 320 >gi|260222423|emb|CBA31972.1| Flagellar motor switch protein fliM [Curvibacter putative symbiont of Hydra magnipapillata] Length = 334 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 96/305 (31%), Gaps = 11/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + H + R+ + + + L + +IS Sbjct: 30 AEHGEVRAYNISSQERIVRG------RMPTMEIVNERFARNLRVGLFNFIRRSPEISVGP 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++S + F+ ++ + + C LV +++ L G + ++ Sbjct: 84 VVVQRYSAFLRELAVPTNFNIVAIRPLRGSGLVVCEPALVFGVIDTLYGGIGKFQTRIEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R S E+++ R + I+ + LE + +E V + Sbjct: 144 RDFSATEQRVINRLVDVITTEYKKAWKGIYPLE--LEYQRSEMQPQFANIATPSEIVIST 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + + I ++ + P TL + S+Q S ++ R+ V I Sbjct: 202 SFQLEIGDITGAIHFSFPYSTLEPIRDVLYSSTQGDSIEVDRRWVNVLTREIQAAEVTIV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + T++ ++ +K G I + +G I+ C+ G Y IRI Sbjct: 262 AELARADATVEQLLGMKKGDFIELDRAP--RIQATVDGVPIFECQYGTHNSKYAIRIEKA 319 Query: 304 INFDQ 308 + + Sbjct: 320 LRGND 324 >gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01] gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01] Length = 347 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 93/304 (30%), Gaps = 11/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ + + R+ + + + + + ++S Sbjct: 28 ETENDSAVNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSIN 81 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 Q KF ++ + I LV L+EN G ++ Sbjct: 82 GVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIE 141 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + + + S E E + Sbjct: 142 GREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVV 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 + ++ ++ F +++P + + + Q+ + + VN Sbjct: 200 SSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNF 259 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + +L+D++ L+ G VIP A + Y ++GR G+ ++I++ Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYRVKMGRSGEKLAVQISE 317 Query: 303 RINF 306 +I Sbjct: 318 KIQR 321 >gi|126175121|ref|YP_001051270.1| flagellar motor switch protein FliM [Shewanella baltica OS155] gi|153001445|ref|YP_001367126.1| flagellar motor switch protein FliM [Shewanella baltica OS185] gi|304409952|ref|ZP_07391571.1| flagellar motor switch protein FliM [Shewanella baltica OS183] gi|307302335|ref|ZP_07582093.1| flagellar motor switch protein FliM [Shewanella baltica BA175] gi|125998326|gb|ABN62401.1| flagellar motor switch protein FliM [Shewanella baltica OS155] gi|151366063|gb|ABS09063.1| flagellar motor switch protein FliM [Shewanella baltica OS185] gi|304351361|gb|EFM15760.1| flagellar motor switch protein FliM [Shewanella baltica OS183] gi|306914373|gb|EFN44794.1| flagellar motor switch protein FliM [Shewanella baltica BA175] Length = 342 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 11/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 ++ ++ R+ + + + L M ++S Sbjct: 27 AVGEDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 80 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF +H+ + S I LV L++N G ++ Sbjct: 81 VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 140 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + I + + + E V Sbjct: 141 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 198 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 + ++ ++ F + +P + + + Q+ ++ + + V D Sbjct: 199 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 258 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 I + TLKDV+ K G +IP ++ Y C++GR N ++I ++ Sbjct: 259 ANIVEHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEK 316 Query: 304 INFDQ 308 I + Sbjct: 317 IPRPE 321 >gi|323174676|gb|EFZ60296.1| flagellar motor switch protein FliM [Escherichia coli LT-68] Length = 334 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQTLEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|16765314|ref|NP_460929.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180551|ref|YP_216968.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613455|ref|YP_001587420.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552791|ref|ZP_02346542.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993551|ref|ZP_02574645.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234149|ref|ZP_02659207.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239216|ref|ZP_02664274.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244827|ref|ZP_02669759.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259737|ref|ZP_02681710.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462482|ref|ZP_02696413.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823019|ref|ZP_02835019.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444199|ref|YP_002041241.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451006|ref|YP_002046027.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194737897|ref|YP_002115010.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249640|ref|YP_002146047.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265099|ref|ZP_03165173.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245200|ref|YP_002215110.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389660|ref|ZP_03216271.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931068|ref|ZP_03221894.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352330|ref|YP_002226131.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856511|ref|YP_002243162.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583525|ref|YP_002637323.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912451|ref|ZP_04656288.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|120346|sp|P26418|FLIM_SALTY RecName: Full=Flagellar motor switch protein FliM gi|154035|gb|AAA27104.1| fliM flagellar switch protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420511|gb|AAL20888.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128184|gb|AAX65887.1| flagellar biosynthesis, component of motor switch and energizing [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362819|gb|ABX66587.1| hypothetical protein SPAB_01172 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402862|gb|ACF63084.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409310|gb|ACF69529.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194713399|gb|ACF92620.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634275|gb|EDX52627.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213343|gb|ACH50740.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243354|gb|EDY25974.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288083|gb|EDY27470.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939716|gb|ACH77049.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602105|gb|EDZ00651.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320112|gb|EDZ05317.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272111|emb|CAR36964.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322661|gb|EDZ10500.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328413|gb|EDZ15177.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331867|gb|EDZ18631.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336350|gb|EDZ23114.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340670|gb|EDZ27434.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350615|gb|EDZ37246.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708314|emb|CAR32617.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468052|gb|ACN45882.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247142|emb|CBG24965.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993965|gb|ACY88850.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158490|emb|CBW18000.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912966|dbj|BAJ36940.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085405|emb|CBY95186.1| Flagellar motor switch protein fliM [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224621|gb|EFX49684.1| Flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616969|gb|EFY13877.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618208|gb|EFY15100.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625879|gb|EFY22698.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626331|gb|EFY23141.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632746|gb|EFY29491.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639088|gb|EFY35781.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640404|gb|EFY37060.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647235|gb|EFY43734.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649917|gb|EFY46338.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655525|gb|EFY51833.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660303|gb|EFY56541.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662984|gb|EFY59191.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668169|gb|EFY64328.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674072|gb|EFY70166.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675576|gb|EFY71650.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683013|gb|EFY79029.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686707|gb|EFY82685.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715027|gb|EFZ06598.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130255|gb|ADX17685.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195405|gb|EFZ80585.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198067|gb|EFZ83184.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204461|gb|EFZ89467.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207551|gb|EFZ92499.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211010|gb|EFZ95870.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217536|gb|EGA02255.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220731|gb|EGA05175.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226682|gb|EGA10879.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231558|gb|EGA15671.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236001|gb|EGA20080.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240571|gb|EGA24614.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245463|gb|EGA29463.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247581|gb|EGA31532.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253956|gb|EGA37780.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255516|gb|EGA39277.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262114|gb|EGA45677.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266237|gb|EGA49727.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270654|gb|EGA54095.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622858|gb|EGE29203.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627380|gb|EGE33723.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988865|gb|AEF07848.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 334 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + P P R+ + + + + + + DI+ Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ D R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ LK G V+P I +G + + + G V Y +R+ Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318 Query: 302 DRINF 306 IN Sbjct: 319 HLINP 323 >gi|260598454|ref|YP_003211025.1| flagellar motor switch protein FliM [Cronobacter turicensis z3032] gi|260217631|emb|CBA31927.1| Flagellar motor switch protein fliM [Cronobacter turicensis z3032] Length = 334 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + + DI+ + + Sbjct: 31 DGDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L S +LV ++NL G ++ R Sbjct: 85 IQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + + N N+ V Sbjct: 145 FTHTEQRVINRMLKLALEAYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I N+ F + +P + + ++ + S + + D R+ + + Sbjct: 204 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQHWRDNLVRQVQHSELELIAN 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ LK G V+P ++ +G + + + G V Y +R+ IN Sbjct: 264 FAEIPLRLSKILKLKPGDVLPIEKP--DRILVHVDGVPVLTSQYGTVSGQYALRVEHLIN 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|77165630|ref|YP_344155.1| flagellar motor switch protein FliM [Nitrosococcus oceani ATCC 19707] gi|254434449|ref|ZP_05047957.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27] gi|76883944|gb|ABA58625.1| Flagellar motor switch protein FliM [Nitrosococcus oceani ATCC 19707] gi|207090782|gb|EDZ68053.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27] Length = 336 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 40/307 (13%), Positives = 94/307 (30%), Gaps = 11/307 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 K P R+ + + + + + + +++ Q Sbjct: 34 EKTIRPYDFSSEDRI------ARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQ 87 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KFS +H+ + + LV L+E G S + +L NR Sbjct: 88 VLKFSEYLHTLFMPTSLNLVQIDPLRGTGLFVFDPKLVFMLVEQYFGGSGQFYNRLENRE 147 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E + + + + A L Q + E + T S+E V Sbjct: 148 FTPTEVHIIQLVLERTFADLKQAWEPVLAVN--FEYLQTELNPRLATIASSSEMVVVSTF 205 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245 ++ E F + +P L + + + + V + Sbjct: 206 HVEFEGGGGEFHIALPYTLLEPVRELLATGKKDDFAQADGGWNQALRKNVSDAEVELSCT 265 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +L +++ LK G ++P + A+G ++ G + +++ +R+ Sbjct: 266 LTEIQLSLGEILALKSGDILPIELP--STVTALADGIPVFRVRYGIHHGSRALKVVERLL 323 Query: 306 FDQKSLK 312 + + Sbjct: 324 SPESFTE 330 >gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio yellowstonii DSM 11347] Length = 322 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 82/296 (27%), Gaps = 9/296 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 P ++ + + + VD+ + Sbjct: 33 SGVRPYDFTSQEKIVRGK------MPSLDIINERLARSFRVSLASDIRKIVDVINVNVNI 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF + S + L + ++ TL+E G S + + R Sbjct: 87 TKFYDFLRSVPFPSSLNIIKLEPLRGFSLVVFDAPMIFTLIEFYFGGSGKGYYKPEGREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + +E+++ + + + + + P+ + T + V Sbjct: 147 TPIEQRIIHKVVMMFLESMEEAWKPIFQIKPHFIRTEM--NPQFVTIVTPVDVVIETEFT 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + IE ++ IP ++ + + I + V ++ + Sbjct: 205 LEIETRECKIMVCIPYSSVEPIKEKLYSAFLADRDEMDMKWIGRLKAQIKNAPVQVEAIL 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 K ++ LK G ++ R L G + +LG NY I+I Sbjct: 265 GKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVEGVPKFKGKLGTFKGNYAIKIIK 320 >gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] Length = 347 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 89/295 (30%), Gaps = 11/295 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFSRHMRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + I LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + + S E E + + ++ ++ Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + + VN + + Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L+D++ L+ G VIP A + Y ++GR G+ ++I+++I Sbjct: 269 SLRDLMELRPGDVIPMNMP--EHATMFVEELPTYRVKMGRSGEKLAVQISEKIQR 321 >gi|239997091|ref|ZP_04717615.1| flagellar motor switch protein FliM [Alteromonas macleodii ATCC 27126] Length = 352 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 91/303 (30%), Gaps = 11/303 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G +T R+ + + + + M ++S Sbjct: 27 GSDSDASTLEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSI 80 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF IH+ + I LV L++N G ++ Sbjct: 81 NGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKI 140 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ + + I + + + + E E V Sbjct: 141 EGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVV 198 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241 + ++ ++ F + +P L + + Q+ E+ + + V Sbjct: 199 ISSFHIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVA 258 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T + L+DV+ K G +IP + + +LGR N ++I Sbjct: 259 LTTHMLDVDVPLRDVMEFKPGDIIPVEMP--ETITVLIEDLPTFRAKLGRSRDNLALKIV 316 Query: 302 DRI 304 ++I Sbjct: 317 EKI 319 >gi|311105953|ref|YP_003978806.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8] gi|310760642|gb|ADP16091.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8] Length = 335 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 37/311 (11%), Positives = 100/311 (32%), Gaps = 9/311 (2%) Query: 4 QSIHKNTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 T+ AR L+ + + + + + + + M DI Sbjct: 21 GESDSKTTATDQSAGARAYDLSSPERVVRRRMQTLELINERFARQMRHVLLNFMRRSADI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + S + K++ + + + NLV ++++L G Sbjct: 81 TVGSIKIQKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHT 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R +T E+++ +R + + K + +NE Sbjct: 141 RVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEV 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQL 238 V + ++ + +P + + ++ E + +R+ Sbjct: 199 VVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWAQQLSRQVRSA 258 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++++ +++++++ LK+G V+P + S +G + C G Y + Sbjct: 259 DIDVVAEFARIPSSIRELMRLKVGDVLPVTVP--ETIVASVDGVPLMECGYGVFNGQYAL 316 Query: 299 RITDRINFDQK 309 R+ + D + Sbjct: 317 RVQNMFTHDTE 327 >gi|312135842|ref|YP_004003180.1| flagellar motor switch protein flim [Caldicellulosiruptor owensensis OL] gi|311775893|gb|ADQ05380.1| flagellar motor switch protein FliM [Caldicellulosiruptor owensensis OL] Length = 329 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 37/292 (12%), Positives = 94/292 (32%), Gaps = 7/292 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + Y + + + V + S + + +S Sbjct: 40 DFKRPSKFAKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVEQLTYYEFSNSLSN 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 V + + + + + +++ +LG + I ++ R+ + +E L +R + Sbjct: 100 PVVMGIVNFAPLKGSIVYEMAPEIAFAMIDRVLGGFGKGIDKI--RTFTEIELALIERLL 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 Q+ + + P LE + NE V + + M + + Sbjct: 158 QQLINYFQEAWENIIQLRPRLEKIET--NPQFTQIVSPNETVALVTIAMKVGEAEGMANI 215 Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +P + ++ SE+ + +K + V + + + T+++ Sbjct: 216 CLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREF 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + L++G V+ R+ + K + GR I+IT + Sbjct: 276 LELQVGDVLRLDRRKNQEIEVYVGNKLKFYGVPGRKEGRVAIKITRVEEGED 327 >gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM 2876] gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM 2876] Length = 329 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 34/308 (11%), Positives = 97/308 (31%), Gaps = 13/308 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + K A+ K + + Y + L + + V + + Sbjct: 32 TEEKTVKDYDFARPAKF------SKEHLRTLEIIFEHYGRLLSTNLPAYLRMPVQVEVKT 85 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++ +S ++ + N + ++NL +++ LLG + + + + Sbjct: 86 SEAVIYSEFSNALSNPVLLGVVDFEPLDGNIVLEIASNLGFVIIDRLLGGAGKPLSK--G 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R S +E + +R +L + P +E + +E + + Sbjct: 144 RDFSEIELSIIERIFNICVNLLREPWQNVLSIVPRMERIET--NSQFAQIISPSEMIAIV 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVN 241 +++ + + + +P L + D + + + Sbjct: 202 TISIKLGDTEGLMNVCLPYSVLEPVMDKLNTKYWFSTMQHRDVKTYEDAISSLISKAQIP 261 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + ++ D + L +G +I + + ++ G NY +RIT Sbjct: 262 VKAVLGNSTISVNDFLNLNVGDIIRLDRKVDEELDVYVGNIHKFTALPGSADDNYAVRIT 321 Query: 302 DRINFDQK 309 + + +++ Sbjct: 322 NVLRGEEE 329 >gi|294636877|ref|ZP_06715207.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685] gi|291089907|gb|EFE22468.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685] Length = 337 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P P R+ + + + + + + DI+ + + Sbjct: 34 DGEVRPYDPTTQRRVV------RERLQALEIVNERFARQFRMGLFNLLRRSPDITVGAVR 87 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + +LV ++NL G ++ R Sbjct: 88 IQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVDGRE 147 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R + + I N N+ V T Sbjct: 148 FTHTEQRVIQRMLRLALDAYRDAWGAIFKLEVEYVRSE-IQVKFTNITTSPNDIVVTTPF 206 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 + + ++ F + IP + + ++ + S+ + + D +++ + + Sbjct: 207 TVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVAN 266 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L DV+ L++G V+P I + +G + +C+ G Y +R+ IN Sbjct: 267 FVDIPLRLSDVLKLQVGDVLPIDRP--DRLIANVDGVPVLTCQYGCYHGQYALRVEKMIN 324 Query: 306 F 306 Sbjct: 325 P 325 >gi|74312485|ref|YP_310904.1| flagellar motor switch protein FliM [Shigella sonnei Ss046] gi|73855962|gb|AAZ88669.1| flagellar motor switch protein FliM [Shigella sonnei Ss046] gi|323168934|gb|EFZ54614.1| flagellar motor switch protein FliM [Shigella sonnei 53G] Length = 334 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 95/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G + ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGNGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DGIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|224826626|ref|ZP_03699727.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002] gi|224601227|gb|EEG07409.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002] Length = 335 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 38/308 (12%), Positives = 92/308 (29%), Gaps = 11/308 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + R+ + + + L + + +IS Sbjct: 28 GQDSQGVRTYDIGRQERIVRG------RMPTLEIINERFARNLRIGLFNFIRRNAEISVG 81 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + K+S I + + + + +LV +++NL G+ ++ Sbjct: 82 PVRVQKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIFDPDLVFLVVDNLFGSDGRYHVRVE 141 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ +R + + + + E V Sbjct: 142 GRDFTPTEQRIIRRLLEVVFTEYQKAWEPVYPIE--FVYLRSEMNTQFANIATPTEVVVA 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242 + ++ + F + +P + + S Q + +R+ V++ Sbjct: 200 MTFHIEMGAGGGEFHVCLPYSMVEPIRDVLSSTMQADRTEVDNRWVSLMSRQVQAAEVDL 259 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + TL V+ LK G V+ E A +S G + C G V +Y +++ Sbjct: 260 VATLAGTSVTLGQVLNLKQGDVVTLEIPEMIIADVS--GIPVVECTYGTVQGHYALKVET 317 Query: 303 RINFDQKS 310 + + Sbjct: 318 ILAGAHEL 325 >gi|323968361|gb|EGB63768.1| flagellar motor switch protein FliM [Escherichia coli M863] gi|323977874|gb|EGB72960.1| flagellar motor switch protein FliM [Escherichia coli TW10509] gi|327253077|gb|EGE64731.1| flagellar motor switch protein FliM [Escherichia coli STEC_7v] Length = 334 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGDSDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|300994270|ref|ZP_07180822.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1] gi|300304935|gb|EFJ59455.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1] Length = 334 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|269139494|ref|YP_003296195.1| flagellar motor switch protein [Edwardsiella tarda EIB202] gi|267985155|gb|ACY84984.1| flagellar motor switch protein [Edwardsiella tarda EIB202] gi|304559383|gb|ADM42047.1| Flagellar motor switch protein FliM [Edwardsiella tarda FL6-60] Length = 337 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 98/304 (32%), Gaps = 10/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ + P P R+ + + + + + + DI+ Sbjct: 31 ENHDGDVRPYDPTTQRRVV------RERLQALEIVNERFARQFRMGLFNLLRRSPDITVG 84 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + + + + + L + +LV ++NL G ++ Sbjct: 85 AVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVD 144 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ +R + + I N N+ V T Sbjct: 145 GREFTHTEQRVIQRMLRLALDAYRDAWGAIFKLDVEYVRSE-IQVKFTNITTSPNDIVVT 203 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNI 242 + + ++ F + IP + + ++ + S+ + + D +++ + + Sbjct: 204 TPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELEL 263 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L DV+ L+IG V+P + + +G + +C+ G Y +R+ Sbjct: 264 VANFVDVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321 Query: 303 RINF 306 IN Sbjct: 322 MINP 325 >gi|56413111|ref|YP_150186.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362037|ref|YP_002141674.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127368|gb|AAV76874.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093514|emb|CAR58975.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 334 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + P P R+ + + + + + + DI+ Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GTIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ D R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ LK G V+P I +G + + + G V Y +R+ Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318 Query: 302 DRINF 306 IN Sbjct: 319 HLINP 323 >gi|332284035|ref|YP_004415946.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7] gi|330427988|gb|AEC19322.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7] Length = 330 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 37/312 (11%), Positives = 101/312 (32%), Gaps = 8/312 (2%) Query: 1 MRGQSIHKNTSPLHPILLA--RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58 + G+S K ++ P + L+ + + + + + L + M + Sbjct: 19 VTGESNEKTSTADDPPGVRPYDLSSPDRVVRHRMQTLELINERFARRLRSVLLSFMRRNA 78 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 DI+ S + K+S + + ++ NLV ++++L G Sbjct: 79 DITVGSIRIQKYSDFERNLPVPSNLNMVTMKPLRGAALFTFDPNLVFLVIDSLFGGHGRY 138 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R +T E+++ +R + E + K + N Sbjct: 139 STRVEGRDFTTTEQRIIRRLLNLTLESYGGAWEQVYPVQ--FEYIRSEMHTKFASITSGN 196 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPFARKTY 236 E V + N+ + + + +P + + ++ + R+ Sbjct: 197 EIVVVTSFNIELGASGGNLNICLPYSMIEPVRDLLTRPLQEANAGAIDQRWTHQLTRQVR 256 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + ++++ +++ L++ ++P G + C G Y Sbjct: 257 SADVELVAEFARIESSIGELMRLEVNDILPLEITP--AINAHVGGVPVMECTYGTFNGRY 314 Query: 297 TIRITDRINFDQ 308 +R+ + + Sbjct: 315 ALRVKKVLASSE 326 >gi|238785486|ref|ZP_04629469.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC 43970] gi|238713588|gb|EEQ05617.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC 43970] Length = 334 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 10/302 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + P P R+ + + + + + DI+ Sbjct: 30 TETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPI 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + + L + +LV ++NL G ++ R Sbjct: 84 KIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ R + + + I N N+ V T Sbjct: 144 EFTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTP 202 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244 ++ I ++ F + IP + + + + S + + ++ + + Sbjct: 203 FHVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVA 262 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L ++ L+ G V+P I +G + + + G + Y +R+ I Sbjct: 263 NFVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLI 320 Query: 305 NF 306 N Sbjct: 321 NP 322 >gi|299068765|emb|CBJ40005.1| flagellar motor switching and energizing component [Ralstonia solanacearum CMR15] Length = 335 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 90/276 (32%), Gaps = 5/276 (1%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + + + + +IS + K+S I + + + Sbjct: 50 RMPTLEIINERFARNWRMGLFNFLRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 NL+ ++++L G ++ R + VE+++ +R + + + Sbjct: 110 LRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAW 169 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 E + + NE V + +M + + + +P + Sbjct: 170 QPIYPIE--FEPLRMEMHTEFANVATPNEVVVSTRFSMELGSNGGDVHVCMPYTMIEPIR 227 Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + S+ Q ++ + + +++ V + + + D++ +K+G V+P Sbjct: 228 DLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL 287 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +G + C G Y +R+ +N Sbjct: 288 --DDAVTARVDGVPVMECAYGTFNGQYALRVNRMLN 321 >gi|15831938|ref|NP_310711.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. Sakai] gi|82543593|ref|YP_407540.1| flagellar motor switch protein FliM [Shigella boydii Sb227] gi|157156914|ref|YP_001463247.1| flagellar motor switch protein FliM [Escherichia coli E24377A] gi|157161416|ref|YP_001458734.1| flagellar motor switch protein FliM [Escherichia coli HS] gi|168751874|ref|ZP_02776896.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4113] gi|168758259|ref|ZP_02783266.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4401] gi|168764429|ref|ZP_02789436.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4501] gi|168771552|ref|ZP_02796559.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4486] gi|168777372|ref|ZP_02802379.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4196] gi|168783342|ref|ZP_02808349.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4076] gi|168790295|ref|ZP_02815302.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC869] gi|168802292|ref|ZP_02827299.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC508] gi|170019722|ref|YP_001724676.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739] gi|170684212|ref|YP_001743300.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5] gi|188494069|ref|ZP_03001339.1| flagellar motor switch protein FliM [Escherichia coli 53638] gi|191168308|ref|ZP_03030101.1| flagellar motor switch protein FliM [Escherichia coli B7A] gi|191173313|ref|ZP_03034843.1| flagellar motor switch protein FliM [Escherichia coli F11] gi|193071140|ref|ZP_03052064.1| flagellar motor switch protein FliM [Escherichia coli E110019] gi|194429931|ref|ZP_03062441.1| flagellar motor switch protein FliM [Escherichia coli B171] gi|194439587|ref|ZP_03071660.1| flagellar motor switch protein FliM [Escherichia coli 101-1] gi|195939251|ref|ZP_03084633.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4024] gi|208810354|ref|ZP_03252230.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4206] gi|208816529|ref|ZP_03257649.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4045] gi|208818778|ref|ZP_03259098.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4042] gi|209396357|ref|YP_002271061.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4115] gi|209919367|ref|YP_002293451.1| flagellar motor switch protein FliM [Escherichia coli SE11] gi|215487145|ref|YP_002329576.1| flagellar motor switch protein FliM [Escherichia coli O127:H6 str. E2348/69] gi|217328609|ref|ZP_03444690.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. TW14588] gi|218554525|ref|YP_002387438.1| flagellar motor switch protein FliM [Escherichia coli IAI1] gi|218558802|ref|YP_002391715.1| flagellar motor switch protein FliM [Escherichia coli S88] gi|218689940|ref|YP_002398152.1| flagellar motor switch protein FliM [Escherichia coli ED1a] gi|218695550|ref|YP_002403217.1| flagellar motor switch protein FliM [Escherichia coli 55989] gi|218699494|ref|YP_002407123.1| flagellar motor switch protein FliM [Escherichia coli IAI39] gi|218705438|ref|YP_002412957.1| flagellar motor switch protein FliM [Escherichia coli UMN026] gi|227885626|ref|ZP_04003431.1| flagellar motor switch protein FliM [Escherichia coli 83972] gi|254793595|ref|YP_003078432.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. TW14359] gi|256017862|ref|ZP_05431727.1| flagellar motor switch protein FliM [Shigella sp. D9] gi|256022397|ref|ZP_05436262.1| flagellar motor switch protein FliM [Escherichia sp. 4_1_40B] gi|260844344|ref|YP_003222122.1| flagellar motor switching and energizing component FliM [Escherichia coli O103:H2 str. 12009] gi|260855920|ref|YP_003229811.1| flagellar motor switching and energizing component FliM [Escherichia coli O26:H11 str. 11368] gi|260868538|ref|YP_003234940.1| flagellar motor switching and energizing component FliM [Escherichia coli O111:H- str. 11128] gi|261227560|ref|ZP_05941841.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. FRIK2000] gi|261254616|ref|ZP_05947149.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. FRIK966] gi|291283122|ref|YP_003499940.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str. CB9615] gi|293405428|ref|ZP_06649420.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412] gi|293410301|ref|ZP_06653877.1| flagellar motor switch protein FliM [Escherichia coli B354] gi|293415255|ref|ZP_06657898.1| flagellar motor switch protein FliM [Escherichia coli B185] gi|293446325|ref|ZP_06662747.1| flagellar motor switch protein FliM [Escherichia coli B088] gi|298381072|ref|ZP_06990671.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302] gi|300818635|ref|ZP_07098843.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1] gi|300822285|ref|ZP_07102426.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7] gi|300899202|ref|ZP_07117478.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1] gi|300904835|ref|ZP_07122661.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1] gi|300920164|ref|ZP_07136614.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1] gi|300923892|ref|ZP_07139907.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1] gi|300931158|ref|ZP_07146505.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1] gi|300940400|ref|ZP_07154985.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1] gi|300951570|ref|ZP_07165403.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1] gi|300956539|ref|ZP_07168821.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1] gi|301018205|ref|ZP_07182720.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1] gi|301305288|ref|ZP_07211385.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1] gi|301327732|ref|ZP_07220937.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1] gi|301644596|ref|ZP_07244585.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1] gi|306814232|ref|ZP_07448398.1| flagellar motor switch protein FliM [Escherichia coli NC101] gi|307138612|ref|ZP_07497968.1| flagellar motor switch protein FliM [Escherichia coli H736] gi|307312469|ref|ZP_07592103.1| flagellar motor switch protein FliM [Escherichia coli W] gi|309795948|ref|ZP_07690361.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7] gi|312967142|ref|ZP_07781360.1| flagellar motor switch protein FliM [Escherichia coli 2362-75] gi|312973838|ref|ZP_07788010.1| flagellar motor switch protein FliM [Escherichia coli 1827-70] gi|331657991|ref|ZP_08358953.1| flagellar motor switch protein FliM [Escherichia coli TA206] gi|331663441|ref|ZP_08364351.1| flagellar motor switch protein FliM [Escherichia coli TA143] gi|331668636|ref|ZP_08369484.1| flagellar motor switch protein FliM [Escherichia coli TA271] gi|331683497|ref|ZP_08384098.1| flagellar motor switch protein FliM [Escherichia coli H299] gi|13362152|dbj|BAB36107.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. Sakai] gi|81245004|gb|ABB65712.1| FliM [Shigella boydii Sb227] gi|157067096|gb|ABV06351.1| flagellar motor switch protein FliM [Escherichia coli HS] gi|157078944|gb|ABV18652.1| flagellar motor switch protein FliM [Escherichia coli E24377A] gi|169754650|gb|ACA77349.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739] gi|170521930|gb|ACB20108.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5] gi|187767405|gb|EDU31249.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4196] gi|188014186|gb|EDU52308.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4113] gi|188489268|gb|EDU64371.1| flagellar motor switch protein FliM [Escherichia coli 53638] gi|188999277|gb|EDU68263.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4076] gi|189354878|gb|EDU73297.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4401] gi|189359725|gb|EDU78144.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4486] gi|189365559|gb|EDU83975.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4501] gi|189370212|gb|EDU88628.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC869] gi|189375729|gb|EDU94145.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC508] gi|190901680|gb|EDV61436.1| flagellar motor switch protein FliM [Escherichia coli B7A] gi|190906430|gb|EDV66039.1| flagellar motor switch protein FliM [Escherichia coli F11] gi|192955535|gb|EDV86014.1| flagellar motor switch protein FliM [Escherichia coli E110019] gi|194412020|gb|EDX28332.1| flagellar motor switch protein FliM [Escherichia coli B171] gi|194421496|gb|EDX37510.1| flagellar motor switch protein FliM [Escherichia coli 101-1] gi|208724870|gb|EDZ74577.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4206] gi|208730872|gb|EDZ79561.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4045] gi|208738901|gb|EDZ86583.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4042] gi|209157757|gb|ACI35190.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4115] gi|209766818|gb|ACI81721.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766820|gb|ACI81722.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766822|gb|ACI81723.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766824|gb|ACI81724.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766826|gb|ACI81725.1| flagellar motor switch protein FliM [Escherichia coli] gi|209912626|dbj|BAG77700.1| flagellar motor switch protein FliM [Escherichia coli SE11] gi|215265217|emb|CAS09607.1| flagellar motor switching and energizing component [Escherichia coli O127:H6 str. E2348/69] gi|217317956|gb|EEC26383.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. TW14588] gi|218352282|emb|CAU98039.1| flagellar motor switching and energizing component [Escherichia coli 55989] gi|218361293|emb|CAQ98877.1| flagellar motor switching and energizing component [Escherichia coli IAI1] gi|218365571|emb|CAR03298.1| flagellar motor switching and energizing component [Escherichia coli S88] gi|218369480|emb|CAR17245.1| flagellar motor switching and energizing component [Escherichia coli IAI39] gi|218427504|emb|CAR08399.2| flagellar motor switching and energizing component [Escherichia coli ED1a] gi|218432535|emb|CAR13428.1| flagellar motor switching and energizing component [Escherichia coli UMN026] gi|222033684|emb|CAP76425.1| flagellar motor switch protein fliM [Escherichia coli LF82] gi|227837199|gb|EEJ47665.1| flagellar motor switch protein FliM [Escherichia coli 83972] gi|254592995|gb|ACT72356.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. TW14359] gi|257754569|dbj|BAI26071.1| flagellar motor switching and energizing component FliM [Escherichia coli O26:H11 str. 11368] gi|257759491|dbj|BAI30988.1| flagellar motor switching and energizing component FliM [Escherichia coli O103:H2 str. 12009] gi|257764894|dbj|BAI36389.1| flagellar motor switching and energizing component FliM [Escherichia coli O111:H- str. 11128] gi|281179007|dbj|BAI55337.1| flagellar motor switch protein FliM [Escherichia coli SE15] gi|284921853|emb|CBG34928.1| flagellar motor switch protein FliM [Escherichia coli 042] gi|290762995|gb|ADD56956.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str. CB9615] gi|291323155|gb|EFE62583.1| flagellar motor switch protein FliM [Escherichia coli B088] gi|291427636|gb|EFF00663.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412] gi|291432903|gb|EFF05882.1| flagellar motor switch protein FliM [Escherichia coli B185] gi|291470769|gb|EFF13253.1| flagellar motor switch protein FliM [Escherichia coli B354] gi|294492735|gb|ADE91491.1| flagellar motor switch protein FliM [Escherichia coli IHE3034] gi|298278514|gb|EFI20028.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302] gi|300316639|gb|EFJ66423.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1] gi|300357183|gb|EFJ73053.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1] gi|300399792|gb|EFJ83330.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1] gi|300403262|gb|EFJ86800.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1] gi|300412821|gb|EFJ96131.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1] gi|300419855|gb|EFK03166.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1] gi|300449197|gb|EFK12817.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1] gi|300454794|gb|EFK18287.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1] gi|300461015|gb|EFK24508.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1] gi|300525168|gb|EFK46237.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7] gi|300528807|gb|EFK49869.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1] gi|300839494|gb|EFK67254.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1] gi|300845732|gb|EFK73492.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1] gi|301077071|gb|EFK91877.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1] gi|305852391|gb|EFM52842.1| flagellar motor switch protein FliM [Escherichia coli NC101] gi|306907640|gb|EFN38143.1| flagellar motor switch protein FliM [Escherichia coli W] gi|307553958|gb|ADN46733.1| flagellar motor switch protein FliM [Escherichia coli ABU 83972] gi|307626579|gb|ADN70883.1| flagellar motor switch protein FliM [Escherichia coli UM146] gi|308120398|gb|EFO57660.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7] gi|309702234|emb|CBJ01551.1| flagellar motor switch protein FliM [Escherichia coli ETEC H10407] gi|310332433|gb|EFP99668.1| flagellar motor switch protein FliM [Escherichia coli 1827-70] gi|312288606|gb|EFR16508.1| flagellar motor switch protein FliM [Escherichia coli 2362-75] gi|312946538|gb|ADR27365.1| flagellar motor switch protein FliM [Escherichia coli O83:H1 str. NRG 857C] gi|315061245|gb|ADT75572.1| flagellar motor switching and energizing component [Escherichia coli W] gi|315257223|gb|EFU37191.1| flagellar motor switch protein FliM [Escherichia coli MS 85-1] gi|315286659|gb|EFU46092.1| flagellar motor switch protein FliM [Escherichia coli MS 110-3] gi|315290262|gb|EFU49640.1| flagellar motor switch protein FliM [Escherichia coli MS 153-1] gi|315296479|gb|EFU55776.1| flagellar motor switch protein FliM [Escherichia coli MS 16-3] gi|320175465|gb|EFW50564.1| Flagellar motor switch protein FliM [Shigella dysenteriae CDC 74-1112] gi|320184483|gb|EFW59287.1| Flagellar motor switch protein FliM [Shigella flexneri CDC 796-83] gi|320191919|gb|EFW66566.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC1212] gi|320194342|gb|EFW68973.1| Flagellar motor switch protein FliM [Escherichia coli WV_060327] gi|320198635|gb|EFW73235.1| Flagellar motor switch protein FliM [Escherichia coli EC4100B] gi|320641793|gb|EFX11181.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. G5101] gi|320647152|gb|EFX15985.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str. 493-89] gi|320652436|gb|EFX20734.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str. H 2687] gi|320658038|gb|EFX25800.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658610|gb|EFX26304.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str. USDA 5905] gi|320668508|gb|EFX35335.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. LSU-61] gi|323152724|gb|EFZ38996.1| flagellar motor switch protein FliM [Escherichia coli EPECa14] gi|323158576|gb|EFZ44590.1| flagellar motor switch protein FliM [Escherichia coli E128010] gi|323180802|gb|EFZ66342.1| flagellar motor switch protein FliM [Escherichia coli 1180] gi|323183929|gb|EFZ69316.1| flagellar motor switch protein FliM [Escherichia coli 1357] gi|323186821|gb|EFZ72141.1| flagellar motor switch protein FliM [Escherichia coli RN587/1] gi|323378178|gb|ADX50446.1| flagellar motor switch protein FliM [Escherichia coli KO11] gi|323937215|gb|EGB33495.1| flagellar motor switch protein FliM [Escherichia coli E1520] gi|323940396|gb|EGB36587.1| flagellar motor switch protein FliM [Escherichia coli E482] gi|323948351|gb|EGB44338.1| flagellar motor switch protein FliM [Escherichia coli H120] gi|323952438|gb|EGB48311.1| flagellar motor switch protein FliM [Escherichia coli H252] gi|323956341|gb|EGB52084.1| flagellar motor switch protein FliM [Escherichia coli H263] gi|323961989|gb|EGB57588.1| flagellar motor switch protein FliM [Escherichia coli H489] gi|323972755|gb|EGB67955.1| flagellar motor switch protein FliM [Escherichia coli TA007] gi|324005856|gb|EGB75075.1| flagellar motor switch protein FliM [Escherichia coli MS 57-2] gi|324013500|gb|EGB82719.1| flagellar motor switch protein FliM [Escherichia coli MS 60-1] gi|324018854|gb|EGB88073.1| flagellar motor switch protein FliM [Escherichia coli MS 117-3] gi|324118994|gb|EGC12883.1| flagellar motor switch protein FliM [Escherichia coli E1167] gi|326342355|gb|EGD66136.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str. 1044] gi|326344860|gb|EGD68607.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str. 1125] gi|330911751|gb|EGH40261.1| flagellar motor switch protein FliM [Escherichia coli AA86] gi|331056239|gb|EGI28248.1| flagellar motor switch protein FliM [Escherichia coli TA206] gi|331059240|gb|EGI31217.1| flagellar motor switch protein FliM [Escherichia coli TA143] gi|331063830|gb|EGI35741.1| flagellar motor switch protein FliM [Escherichia coli TA271] gi|331079712|gb|EGI50909.1| flagellar motor switch protein FliM [Escherichia coli H299] gi|332093098|gb|EGI98162.1| flagellar motor switch protein FliM [Shigella boydii 5216-82] gi|332096930|gb|EGJ01919.1| flagellar motor switch protein FliM [Shigella boydii 3594-74] gi|332343671|gb|AEE57005.1| flagellar motor switch protein FliM [Escherichia coli UMNK88] Length = 334 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|332095507|gb|EGJ00523.1| flagellar motor switch protein FliM [Shigella dysenteriae 155-74] Length = 334 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RKRLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|320529422|ref|ZP_08030510.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399] gi|320138388|gb|EFW30282.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399] Length = 334 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 8/286 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + L + + L + V+I S + + + S V + Sbjct: 49 SKDQIRTLFMLHESFSRLLNTYLSASLRTMVNIEVLSVEQMTYQEFVQSMANPSVIGIIA 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L N I ++ ++ + G + P + +R+L+ +E + +R I + Sbjct: 109 LPPLKGNIIIEVGPDIAFAYVDRVFGGEGK--PSVKSRALTDIESAVMRRFIDTVINYFR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S E PN E + ++ V + ++M + +V + IP L Sbjct: 167 EAWSNVVEFRPNFETMET--NPQFAQIVPPSDMVVLVTIHMKLGDVEGMMNICIPYLVLE 224 Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +S + S D + RK + V + T+ + +TL G Sbjct: 225 PVMSKLTTSFWVASSVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGD 284 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+ K + + G GK ++I+ I D+ Sbjct: 285 VLQLDTLAKDELVCYVGTNAKFRAHPGTAGKRMAVQISGIIEGDED 330 >gi|194434971|ref|ZP_03067214.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012] gi|194416806|gb|EDX32932.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012] Length = 334 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|146312182|ref|YP_001177256.1| flagellar motor switch protein FliM [Enterobacter sp. 638] gi|145319058|gb|ABP61205.1| flagellar motor switch protein FliM [Enterobacter sp. 638] Length = 334 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P P R+ + + + + + + DI+ + + Sbjct: 32 EPEIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L S +LV ++NL G ++ R Sbjct: 86 IQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + + N N+ V Sbjct: 146 FTHTEQRVINRMLKLALESYSDAWKAIHPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPF 204 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I N+ F + +P + + ++ + S N+ ++ + R+ + + Sbjct: 205 HVEIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRNEDQNWRENLVRQVQHSQLELVAS 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ L+ G V+P I + + + + G V Y +R+ IN Sbjct: 265 FADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDDVPVLTSQYGTVNGQYALRVEHLIN 322 Query: 306 F 306 Sbjct: 323 P 323 >gi|170769401|ref|ZP_02903854.1| flagellar motor switch protein FliM [Escherichia albertii TW07627] gi|170121725|gb|EDS90656.1| flagellar motor switch protein FliM [Escherichia albertii TW07627] Length = 334 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 STESDIRPYDPNTQQRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + + N N+ V Sbjct: 144 REFTDTEQRVINRMLKLALEGYSDAWKAINPLNVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ Q S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPQENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPSDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|320182738|gb|EFW57622.1| Flagellar motor switch protein FliM [Shigella boydii ATCC 9905] Length = 334 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum Ice1] gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum Ice1] Length = 331 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 102/317 (32%), Gaps = 9/317 (2%) Query: 2 RGQSIHKNTSPLHPILLA--RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 GQ ++ + K + Y + L + V Sbjct: 19 SGQVTPEDVKDDLTSKIRVYDFKRPNKFSKDQIHTLQVIYENYCRSLTTYLAANLRTLVQ 78 Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 IS S + I S + + ++S + N + N+ +++ L G + Sbjct: 79 ISVQSLDQLTYEEFIRSIPNPTIVNIFTMSPLNGNGIMEIHPNIAFAVIDRLFGGTGNPP 138 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ R L+ +E+ + +RT ++ + + LE + E Sbjct: 139 DKI--RGLTEIEQSVFQRTTRRMLDSFTEAWDNIAQVKARLEMIET--NPQFIQIVAPTE 194 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTY 236 V I + I +V + +P L N ++ ++ + ++ + Sbjct: 195 MVVVITLACKIGDVEGMINICLPYILLEPIISKLSAHFWFSNAAKERTTEQLEALRNRLE 254 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V I + ++ +++ L++G VI +R + + + Y G G Sbjct: 255 RALVPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSELEVLIGQRVKYLARPGLSGSKL 314 Query: 297 TIRITDRINFDQKSLKN 313 I+IT ++ Sbjct: 315 GIQITATYEKGVETDDE 331 >gi|238794009|ref|ZP_04637627.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC 29909] gi|238726641|gb|EEQ18177.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC 29909] Length = 334 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 89/301 (29%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + + DI+ + Sbjct: 31 ETDVKPYDPTTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + +LV ++NL G ++ R Sbjct: 85 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + + I N N+ V T Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I ++ F + IP + + + + S + + ++ + + Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|120598257|ref|YP_962831.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1] gi|146293665|ref|YP_001184089.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32] gi|120558350|gb|ABM24277.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1] gi|145565355|gb|ABP76290.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32] gi|319427064|gb|ADV55138.1| flagellar motor switch protein FliM [Shewanella putrefaciens 200] Length = 343 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 94/305 (30%), Gaps = 11/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + ++ R+ + + + L M ++S Sbjct: 28 AASQDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 81 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF +H+ + S I LV L++N G ++ Sbjct: 82 VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 141 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + I + + + E V Sbjct: 142 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 199 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 + ++ ++ F + +P + + + Q+ ++ + + V D Sbjct: 200 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 259 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + TLKDV+ K G +IP ++ Y C++GR N ++I ++ Sbjct: 260 ACVVEHELTLKDVMNFKAGDIIPVELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEK 317 Query: 304 INFDQ 308 I + Sbjct: 318 IPRPE 322 >gi|138894751|ref|YP_001125204.1| flagellar motor switch protein FliM [Geobacillus thermodenitrificans NG80-2] gi|196247627|ref|ZP_03146329.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16] gi|134266264|gb|ABO66459.1| Flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] gi|196212411|gb|EDY07168.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16] Length = 334 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 98/289 (33%), Gaps = 7/289 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V IS S + + S + + + Sbjct: 50 SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFE 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + N+ +L+ ++G ++ ++ + L+ +E ++ + A Sbjct: 110 VPPLDGHVLLEVNPNIAYAMLDRVMGGRGASMDKVEH--LTEIETRIMSSLFDKAFAHWR 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P DF + N+ V I++N I + IP L Sbjct: 168 DAWESVAEVDPLFVDFEV--NPQFLRMIAPNDTVVVISLNTQIGEARGMMNVCIPHVVLE 225 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q + + +S + R+ + I + T+ + + L++G V Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAGRIERRIRAAQLPIVAELGTAVVTVGEFLQLEVGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I ++ + + G+ K ++I I ++S Sbjct: 286 IQLKQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGGEESYDE 334 >gi|317492415|ref|ZP_07950844.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919754|gb|EFV41084.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium 9_2_54FAA] Length = 337 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 98/302 (32%), Gaps = 10/302 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + P P R+ + + + + + + DI+ + Sbjct: 33 SESDVRPYDPTTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAV 86 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + + L+ + + +LV ++NL G ++ R Sbjct: 87 KIQPYHEFARNLPVPTNLNLIHLNPLRGTALMVFAPSLVFMAVDNLFGGDGRFPTKVDGR 146 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ KR + S + I N N+ V T Sbjct: 147 EFTHTEQRVIKRMLRLALDAYRDAWSAIYKLEVEYVRSE-IQVKFTNITTSPNDIVVTTP 205 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244 + + ++ F + IP + + ++ + S+ + + D +++ + + Sbjct: 206 FTVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVA 265 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L +V+ L+ G V+P I + +G + +C+ G Y +R+ I Sbjct: 266 NFVDIPLRLSEVLKLQPGDVLPIEKP--EKLIANVDGVPVLTCQYGSQNGQYALRVERLI 323 Query: 305 NF 306 N Sbjct: 324 NP 325 >gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1] gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1] Length = 349 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 91/301 (30%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + + + + ++S Q Sbjct: 33 DVVHFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMM 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF ++ + I LV L+EN G ++ R + Sbjct: 87 KFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + + + S E E + + ++ Sbjct: 147 PTERRIIQLLMKTVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHI 204 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ F +++P + + + Q+ + + VN + Sbjct: 205 EVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLL 264 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 K +L+D++ L+ G +IP E A + + ++GR G+ ++I+++I Sbjct: 265 EKDVSLRDLMELQAGDIIPIDMPEN--ATMFVEELPTFRVKMGRTGEKVAVQISEKIRRP 322 Query: 308 Q 308 Sbjct: 323 D 323 >gi|170725980|ref|YP_001760006.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908] gi|169811327|gb|ACA85911.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908] Length = 342 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 94/297 (31%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + L M ++S Q KF Sbjct: 35 YDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQMLKFGE 88 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +H+ + + I LV L++N G ++ R + E+ Sbjct: 89 YVHTLFVPTSLNMVRFNPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFTPTER 148 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + I + + + E V + ++ ++ Sbjct: 149 RIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVISSFHIEVDG 206 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F + +P + + + Q+ +++ + +NV +D + + Sbjct: 207 GGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALKDEIMDVNVGLDATVVEHQI 266 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 TLKDV+ LK G +IP IL + C+LG+ N +R+ +I + Sbjct: 267 TLKDVMELKQGDIIPVELP--EHIILRVEDLPTFRCKLGKARDNLALRVIQKIPRPE 321 >gi|296103565|ref|YP_003613711.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058024|gb|ADF62762.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 334 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 93/301 (30%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + + DI+ + + Sbjct: 32 DSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + S +LV ++NL G ++ R Sbjct: 86 IQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + + N N+ V Sbjct: 146 FTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPF 204 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I N+ F + +P + + ++ + S ++ ++ + R+ + + Sbjct: 205 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVAS 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 265 FADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLIN 322 Query: 306 F 306 Sbjct: 323 P 323 >gi|294140210|ref|YP_003556188.1| flagellar motor switch protein FliM [Shewanella violacea DSS12] gi|293326679|dbj|BAJ01410.1| flagellar motor switch protein FliM [Shewanella violacea DSS12] Length = 343 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 96/297 (32%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + L M ++S Q KF Sbjct: 36 YDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQMLKFGE 89 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +H+ + S I LV L++N G ++ R + E+ Sbjct: 90 YVHTLFVPTSLNMVRFSPLKGTGLITMEARLVFILVDNFFGGDGRFHAKIEGREFTPTER 149 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + I + + E E V + ++ ++ Sbjct: 150 RIVQLLLKIIFEDYKDAWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVVSSFHIEVDG 207 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F + +P + + + Q+ +++ + ++V ID I ++ Sbjct: 208 GGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSLALKDEIMDIDVGIDATIVEQQI 267 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 TLKDV+ K G +IP +L Y C+LG+ N +RIT++I + Sbjct: 268 TLKDVMEFKAGDIIPVELP--EHIVLRVEDLPTYRCKLGKTRDNLALRITEKIPRPE 322 >gi|193066386|ref|ZP_03047434.1| flagellar motor switch protein FliM [Escherichia coli E22] gi|192925971|gb|EDV80617.1| flagellar motor switch protein FliM [Escherichia coli E22] Length = 334 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKALNPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|15802380|ref|NP_288406.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 EDL933] gi|12516052|gb|AAG56960.1|AE005417_2 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction [Escherichia coli O157:H7 str. EDL933] Length = 334 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGX 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|291617855|ref|YP_003520597.1| FliM [Pantoea ananatis LMG 20103] gi|291152885|gb|ADD77469.1| FliM [Pantoea ananatis LMG 20103] gi|327394272|dbj|BAK11694.1| flagellar motor switch protein FliM [Pantoea ananatis AJ13355] Length = 335 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 40/306 (13%), Positives = 92/306 (30%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + P P R+ + + + + + + DIS Sbjct: 27 KQNGPEGDIRPYDPNTQRRVV------RERLQALEIINERFARSFRMALFNLLRRSPDIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + S +LV ++NL G + Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ +R + + + N N+ V Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240 + I N+ F + IP + + ++ + S ++ D ++ + Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLREMLVNPPLENSRSEDTHWRDNLVKQVQHSEL 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L V+ LK G V+P I +G + + + G + Y +R+ Sbjct: 260 ELIAHFAETSLRLSRVLQLKPGDVLPIEKP--ERIIAHVDGVPVLTSQYGTLNGQYALRV 317 Query: 301 TDRINF 306 IN Sbjct: 318 EHLINP 323 >gi|328948403|ref|YP_004365740.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM 2489] gi|328448727|gb|AEB14443.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM 2489] Length = 344 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 113/314 (35%), Gaps = 10/314 (3%) Query: 2 RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58 G+S P+ I + K + S++ + + ++ V Sbjct: 19 TGESEADEFKPVTDTRRIKIYDFRRPDKFSKEQIRTVSNMHETFARLTTTSLSAQLRTLV 78 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 + S + I S + ++ N + + + +++ L G S +T Sbjct: 79 HVHVASVDQLTYEEFIRSIPTPTTLAVINMDPLKGNAVLEIAPEITFIIIDRLFGGSGDT 138 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ NR L+ +E+ + + I +I A + + + + P L+ + + Sbjct: 139 GGKV-NRDLTDIEQSVMEGIIVRILANMREAWTQVIDLRPRLQQIET--NPQFAQIVPPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235 E V + + + I A + IP T+ + + + + K Sbjct: 196 EMVILVTLEIKIGEEAGMMNICIPYITIEPIVSKLSSSFWFSSVRRSSTTQYLGTLKEKL 255 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGK 294 + + + I ++DV++L+ G VI + LS K+ + C+ G VGK Sbjct: 256 ADVEMELVADIGSINVPIRDVLSLRTGDVIRLNTIKVGEPLTLSVGSKKKFYCQPGVVGK 315 Query: 295 NYTIRITDRINFDQ 308 ++I ++I+ + Sbjct: 316 KVAVQIIEKIDEQE 329 >gi|238798578|ref|ZP_04642055.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC 43969] gi|238717598|gb|EEQ09437.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC 43969] Length = 334 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + DI+ + Sbjct: 31 ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + +LV ++NL G ++ R Sbjct: 85 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + + I N N+ V T Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I ++ F + IP + + + + S + + ++ + + Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|154686048|ref|YP_001421209.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens FZB42] gi|154351899|gb|ABS73978.1| FliM [Bacillus amyloliquefaciens FZB42] Length = 332 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 93/286 (32%), Gaps = 8/286 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F K+ + IS +S + I S + + Sbjct: 49 SKDQIRSLTRIHDNFARLLTTHFSAKLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFD 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + +L+ ++G T + + L+ +E + Sbjct: 109 VHPMEGRIMMEVNPTIAYAMLDRVMGGIGITHNKADS--LTEIETNIISNLFENALGNYK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P E + NE V I++N I ++ L IP L Sbjct: 167 EAWQSIADIDP--EMTEFEVNPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPHVVLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q+ + ++ + + + + T+++ ++L++G Sbjct: 225 PIIPKLSVHYWMQSDRNEAKPEETKLLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDC 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309 I + K + + GRV + ++I D I +Q Sbjct: 285 ITLDKSVTDPLTVLVGNKPKFLGQAGRVNRRQAVQILDHDIRGEQD 330 >gi|300717238|ref|YP_003742041.1| flagellar motor switch protein [Erwinia billingiae Eb661] gi|299063074|emb|CAX60194.1| Flagellar motor switch protein [Erwinia billingiae Eb661] Length = 335 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + + DI+ + + Sbjct: 32 DNDIRPYDPNTQRRMV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + S +LV ++NL G ++ R Sbjct: 86 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R + ++ + N N+ V T Sbjct: 146 FTATEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVITTPF 204 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 + I N+ F + IP + ++ + S + ++ D ++ + + Sbjct: 205 QVEIGNLVGEFNICIPFSMIEPLRETLVNPPLENSRQEDQNWRDTLVKQVQHSELELIAN 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + ++ LK G V+P I +G + + + G + Y +R+ IN Sbjct: 265 FGEVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 322 Query: 306 F 306 Sbjct: 323 P 323 >gi|254506968|ref|ZP_05119107.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16] gi|219550253|gb|EED27239.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16] Length = 349 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 34/305 (11%), Positives = 90/305 (29%), Gaps = 11/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + + R+ + + + + + ++S Sbjct: 29 ASDSSAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSING 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF ++ + I LV L+EN G ++ Sbjct: 83 VQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + + + S E E + Sbjct: 143 REFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVS 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 + ++ ++ F +++P + + + Q+ + + VN Sbjct: 201 SFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFR 260 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + +L+D++ L+ G +IP A + Y ++GR G ++++++ Sbjct: 261 VNLLEQDISLRDLMELRPGDIIPISMP--EHATMFVEELPTYRVKMGRSGDKLAVQVSEK 318 Query: 304 INFDQ 308 I Sbjct: 319 IKRPD 323 >gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] Length = 327 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 98/293 (33%), Gaps = 7/293 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + + + L + V + + + +S ++ Sbjct: 39 DFARPSKFSKEHLRTLEIIFEHFGRLLATNLPGYLRKTVSVDVVNSEVVIYSEFSNALSN 98 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + ++ N + ++NL +++ LLG S T+ + R S +E + +R Sbjct: 99 PVLLGVVTMPPLKGNIIMEMASNLGYAIIDRLLGGSGNTMDK--ARDFSEIELTILERIF 156 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 +L + ++SP LE + +E + + +++ I V + Sbjct: 157 TICVNLLQEPWQNVVQTSPRLERIET--NSQFAQIISPSETIAIVTLSIKIGEVEGLMNI 214 Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +P TL + + D + + + + + ++ D Sbjct: 215 CLPFVTLEPVMDKLNTKYWFSTLQDKDDQSYQDAIESLIDRAQIPMKAVLGHSRISVGDF 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V L++G +I + + + ++ G Y IRIT+ I + + Sbjct: 275 VNLQLGDIIRLDRKVDDELEVYVGNIKKFAALPGYSEDKYAIRITEVIKEESE 327 >gi|30063384|ref|NP_837555.1| flagellar motor switch protein FliM [Shigella flexneri 2a str. 2457T] gi|56480007|ref|NP_707830.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301] gi|30041636|gb|AAP17364.1| flagellar motor switch protein FliM [Shigella flexneri 2a str. 2457T] gi|56383558|gb|AAN43537.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301] gi|313650167|gb|EFS14580.1| flagellar motor switch protein FliM [Shigella flexneri 2a str. 2457T] gi|332757511|gb|EGJ87846.1| flagellar motor switch protein FliM [Shigella flexneri K-671] gi|333017577|gb|EGK36889.1| flagellar motor switch protein FliM [Shigella flexneri K-304] Length = 334 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|127512304|ref|YP_001093501.1| flagellar motor switch protein FliM [Shewanella loihica PV-4] gi|126637599|gb|ABO23242.1| flagellar motor switch protein FliM [Shewanella loihica PV-4] Length = 341 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 98/304 (32%), Gaps = 5/304 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + S + + + + + + L M ++S Sbjct: 21 EEEEVSDALDARAYDFSSQDRIVRGRMPTLEIVNERFARHLRISMFNMMRRAAEVSINGV 80 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 Q KF +H+ + S I LV L++N G ++ R Sbjct: 81 QMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGR 140 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ + + I + + + + E V + Sbjct: 141 EFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVSS 198 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ ++ F + +P + + + Q+ +++ + + V +D Sbjct: 199 FHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALKDEIMDVEVGLDA 258 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I K+ +LKDV+ K G +IP +L Y C+LGR +N + I ++I Sbjct: 259 TIVEKEISLKDVMGFKAGDIIPVEMP--EYIVLRVEDLPTYRCKLGRSRENLALNIREKI 316 Query: 305 NFDQ 308 + Sbjct: 317 PRPE 320 >gi|332756101|gb|EGJ86454.1| flagellar motor switch protein FliM [Shigella flexneri 4343-70] gi|332757253|gb|EGJ87590.1| flagellar motor switch protein FliM [Shigella flexneri 2747-71] gi|332766683|gb|EGJ96887.1| flagellar motor switch protein FliM [Shigella flexneri 2930-71] gi|333003346|gb|EGK22892.1| flagellar motor switch protein FliM [Shigella flexneri K-218] Length = 334 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY] gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY] Length = 334 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 93/300 (31%), Gaps = 11/300 (3%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 R+ + + + + +IS + + Sbjct: 35 VRNYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGTVSVQR 88 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 +S + F+ ++ + + C +LV +++ L G + ++ R S Sbjct: 89 YSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGVGKFQTRIEGRDFSA 148 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E+++ R + I A + + + +E V + + Sbjct: 149 TEQRVINRLVDVICAEYKKAWQGIYPLELAYQRSEM--QPQFANIATPSEIVVSTAFQLE 206 Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 I ++A + + +P TL + S Q + + R+ V + + Sbjct: 207 IGDLAGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVRVLTREIQAAEVTLVAELAR 266 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 T++ ++ +K G I S G ++ C+ G Y IRI + + + Sbjct: 267 ADATVEQLLAMKPGDFIELEREP--RIRASIEGVPVFECQYGTHNSKYAIRIEECLRGAE 324 >gi|121997289|ref|YP_001002076.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1] gi|121588694|gb|ABM61274.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1] Length = 381 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 P R+ + + + + ++S T + Sbjct: 34 ELRPYTFTAEERIVRG------RMPTLEMINERFGRLFRIGLFNMLRRTPEVSVTGVEMM 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + + + LV +++N G ++ R + Sbjct: 88 KFGEYVHTLFVPTSLNIIRVPPLRGSGLFVIDPKLVFLVVDNFFGGGGHFYLKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + Q L + + E + E V ++ Sbjct: 148 PTEQRVIRLMLDQAFDDLREAWNPVLGVD--FEYVNMEVNPQFANIVSPTEVVVVSKFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ + +P + I + Q+ + + + V + + + Sbjct: 206 ELDGGGGDIHVTLPYTMVEPIREILDAGVQSDRNDVDDRWAKALREEMKTAPVTLHSTLA 265 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + TL+D++ LK G VIP E+ + ++ G N +RI +++ Sbjct: 266 RSEITLRDLMHLKAGDVIPIEMPERVVVEVEE--VPVFYGTYGVCEGNAALRIDEKVQAP 323 Query: 308 QK 309 ++ Sbjct: 324 ER 325 >gi|332140589|ref|YP_004426327.1| flagellar motor switch protein FliM [Alteromonas macleodii str. 'Deep ecotype'] gi|327550611|gb|AEA97329.1| flagellar motor switch protein FliM [Alteromonas macleodii str. 'Deep ecotype'] Length = 352 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 90/300 (30%), Gaps = 11/300 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 +T R+ + + + + M ++S Sbjct: 30 SDASTLEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGI 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 Q KF IH+ + I LV L++N G ++ R Sbjct: 84 QMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ + + I + + + + E E V + Sbjct: 144 EFTPTERRIIQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISS 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ ++ F + +P L + + Q+ E+ + + V + T Sbjct: 202 FHIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVALTT 261 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + L+DV+ K G +IP + + +LGR N ++I ++I Sbjct: 262 HMLDVDVPLRDVMEFKPGDIIPVEMP--ETITVLIEDLPTFRAKLGRSRDNLALKIVEKI 319 >gi|167623386|ref|YP_001673680.1| flagellar motor switch protein FliM [Shewanella halifaxensis HAW-EB4] gi|167353408|gb|ABZ76021.1| flagellar motor switch protein FliM [Shewanella halifaxensis HAW-EB4] Length = 342 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 95/301 (31%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + + L M ++S Q Sbjct: 31 DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + S I LV L++N G ++ R + Sbjct: 85 KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + I + + + E V + ++ Sbjct: 145 PTERRIVQLLLKIIFEDYKDAWAPVMDVQ--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 202 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ F + +P + + + Q+ +++ + ++V ID I Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIV 262 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 K TLK V+ K G VIP IL Y C++GR +N ++I ++I Sbjct: 263 EHKVTLKQVLEFKAGDVIPVELP--EYIILKVEDLPTYRCKMGRTKENLALKICEQIPRP 320 Query: 308 Q 308 + Sbjct: 321 E 321 >gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] Length = 349 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 91/304 (29%), Gaps = 11/304 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + R+ + + + + + ++S Sbjct: 30 SDTSAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 Q KF ++ + I LV L+EN G ++ R Sbjct: 84 QMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ + + + + S E E + + Sbjct: 144 EFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSS 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ ++ F +++P + + + Q+ + + VN Sbjct: 202 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRV 261 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + +L+D++ L+ G +IP A + + ++GR G+N ++++++I Sbjct: 262 NLLEQDISLRDLMELQPGDIIPITMP--EHATMFVEELPTFRVKMGRSGENLAVQVSEKI 319 Query: 305 NFDQ 308 Sbjct: 320 KRPD 323 >gi|297530595|ref|YP_003671870.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3] gi|297253847|gb|ADI27293.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3] Length = 334 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 7/289 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V IS S + + S + + + Sbjct: 50 SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFE 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + N+ +L+ ++G + ++ + L+ +E ++ + Sbjct: 110 VPPLGGHVLLEVNPNIAYAMLDRVMGGRGVGMDKVEH--LTEIETRIMSNLFDKAFVYWR 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P DF + N+ V I++N I + IP L Sbjct: 168 DAWESVAEVDPLFVDFEV--NPQFLRMIAPNDTVVVISLNTQIGEARGMMNVCIPHVVLE 225 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q + + +S + ++ + I + T+ + + L+ G V Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAKRIEQRIRAAKLPIIAELGTAVITVNEFLQLEAGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I ++ + + G+ K ++I I D+ Sbjct: 286 IQLEQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGDKDDHDE 334 >gi|56419765|ref|YP_147083.1| flagellar motor switch protein FliM [Geobacillus kaustophilus HTA426] gi|261419430|ref|YP_003253112.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61] gi|319766245|ref|YP_004131746.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52] gi|56379607|dbj|BAD75515.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] gi|261375887|gb|ACX78630.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61] gi|317111111|gb|ADU93603.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52] Length = 334 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 7/289 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V IS S + + S + + + Sbjct: 50 SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFE 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + N+ +L+ ++G + ++ + L+ +E ++ + Sbjct: 110 VPPLGGHVLLEVNPNIAYAMLDRVMGGRGVGMDKVEH--LTEIETRIMSNLFDKAFVHWR 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P DF + N+ V I++N I + IP L Sbjct: 168 DAWESVAEVDPLFVDFEV--NPQFLRMIAPNDTVVVISLNTQIGEARGMMNVCIPHVVLE 225 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q + + +S + ++ + I + T+ + + L+ G V Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAKRIEQRIRAAKLPIIAELGTAVITVNEFLQLEAGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I ++ + + G+ K ++I I D+ Sbjct: 286 IQLEQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGDEDDHDE 334 >gi|238920318|ref|YP_002933833.1| flagellar motor switch protein FliM [Edwardsiella ictaluri 93-146] gi|238869887|gb|ACR69598.1| flagellar motor switch protein FliM, putative [Edwardsiella ictaluri 93-146] Length = 337 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 97/304 (31%), Gaps = 10/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ P P R+ + + + + + + DI+ Sbjct: 31 ETHDGEVRPYDPTTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVG 84 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + + + + + L + +LV ++NL G ++ Sbjct: 85 AVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVD 144 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ + + S + I N N+ V T Sbjct: 145 GREFTHTEQRVIQSMLRLALDAYRDAWSAIFKLDIEYVRSE-IQVKFTNITTSPNDIVVT 203 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNI 242 + + ++ F + IP + + ++ + S+ + + D +++ + + Sbjct: 204 TPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELEL 263 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L DV+ L+IG V+P + + +G + +C+ G Y +R+ Sbjct: 264 VADFVDIPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321 Query: 303 RINF 306 IN Sbjct: 322 MINP 325 >gi|121608105|ref|YP_995912.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae EF01-2] gi|121552745|gb|ABM56894.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae EF01-2] Length = 334 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + + L + +IS Sbjct: 34 SVRNYDLSSQERIVRG------RMPTMEIVNERFARNLRIGLFNFIRRSPEISVGMVSVQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 ++S + F+ ++ + + C +LV +++ L G + + ++ R S Sbjct: 88 RYSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGAGKFQTRIEGRDFS 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + I A + LE + +E V + + Sbjct: 148 PTEQRVINRLVDVICAEYKKAWQGIYPLE--LEYQRSEMQPQFANIATPSEIVVSTAFQL 205 Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I ++ + + +P TL + S+Q S + R+ V + + Sbjct: 206 EIGDLPGAIHMCMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVVLVAELA 265 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 T++ ++ LK G I + + G I+ C+ G Y IRI + Sbjct: 266 RADATVEQLLALKPGDFIELERQP--RIRAAIGGVPIFECQYGTHNCRYAIRIEKCLRNA 323 Query: 308 Q 308 Sbjct: 324 D 324 >gi|292493590|ref|YP_003529029.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4] gi|291582185|gb|ADE16642.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4] Length = 349 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 98/307 (31%), Gaps = 16/307 (5%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P R+ + + + L + +D++ + Q Sbjct: 34 EEAVRPYDFSSEDRIVRA------RLPALEMINERFVRQLRRSLFNLFRRAIDVTVSGMQ 87 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH-----ETIPQ 121 KFS IH+ + +S LV +++N G S + + Sbjct: 88 MVKFSEYIHTLFVPTSLNMVQMSPLQGTSLFVFDPKLVFMMVDNYFGGSGRAYARRSYAR 147 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E ++ + + ++ A L Q + E + T +E V Sbjct: 148 IEGREFTPTEVRVVQLVLEKVFADLEQAWEPVLAV--HFEYLQAEPNPQFATIVSPSEVV 205 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNV 240 + + F + +P L + Q+ S E K + V Sbjct: 206 VVSTFFVEFDGGGGEFHITLPYAMLEPIRELLEVGRQSGSSQVDERWDQALQEKILEAEV 265 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + + +L++++ L+ G ++P + A+G ++ G NY +++ Sbjct: 266 ELSCTLAETQLSLREILALEPGDILPIELP--SILTAQADGVPVFRARYGVHNDNYALKV 323 Query: 301 TDRINFD 307 + + Sbjct: 324 VEPLPHQ 330 >gi|238751773|ref|ZP_04613261.1| Flagellar motor switch protein fliM [Yersinia rohdei ATCC 43380] gi|238710044|gb|EEQ02274.1| Flagellar motor switch protein fliM [Yersinia rohdei ATCC 43380] Length = 334 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + DI+ + Sbjct: 31 ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + +LV ++NL G ++ R Sbjct: 85 IQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + + I N N+ V T Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I ++ F + IP + + + + S + + ++ + + Sbjct: 204 HVEIGTLSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLIN 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|238788326|ref|ZP_04632120.1| Flagellar motor switch protein fliM [Yersinia frederiksenii ATCC 33641] gi|238723572|gb|EEQ15218.1| Flagellar motor switch protein fliM [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + DI+ + Sbjct: 31 ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + +LV ++NL G ++ R Sbjct: 85 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + + I N N+ V T Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I ++ F + IP + + + + S + + ++ + + Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLIN 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|313895914|ref|ZP_07829468.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137 str. F0430] gi|312975339|gb|EFR40800.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137 str. F0430] Length = 334 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 8/286 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + L + + L + V+I S + + + S V + Sbjct: 49 SKDQIRTLFMLHESFSRLLNTYLSASLRTMVNIEVLSVEQMTYQEFVQSMANPAVIGIIA 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L N I ++ ++ + G + P + +R+L+ +E + +R I + Sbjct: 109 LPPLKGNIIIEVGPDIAFAYVDRVFGGEGK--PSVKSRALTDIESAVMRRFIDTVINYFR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S E PN E + ++ V + ++M + +V + IP L Sbjct: 167 EAWSNVVEFRPNFETMET--NPQFAQIVPPSDMVVLVTIHMKLGDVEGMMNICIPYLVLE 224 Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +S + S D + RK + V + T+ + +TL G Sbjct: 225 PVMSKLTTSFWVAASVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGD 284 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+ K + + G GK ++I+ I D+ Sbjct: 285 VLQLDTLAKDELVCYVGTNAKFRAYPGTAGKRMAVQISGIIEGDED 330 >gi|24374733|ref|NP_718776.1| flagellar motor switch protein FliM [Shewanella oneidensis MR-1] gi|24349393|gb|AAN56220.1|AE015759_12 flagellar motor switch protein FliM [Shewanella oneidensis MR-1] Length = 343 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 93/305 (30%), Gaps = 11/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 ++ + R+ + + + L M ++S Sbjct: 28 AVGQEARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 81 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF +H+ + I LV L++N G ++ Sbjct: 82 VQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 141 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ + + I + + + E V Sbjct: 142 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 199 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243 + ++ ++ F + +P + + + Q+ ++ + + V D Sbjct: 200 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 259 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + TLKDV+ K G +IP ++ Y C++GR N ++I ++ Sbjct: 260 ATVVEHELTLKDVMNFKAGDIIPIELP--EYIMMRIEDLPTYRCKMGRSRDNLALKIYEK 317 Query: 304 INFDQ 308 I + Sbjct: 318 IPRPE 322 >gi|16129892|ref|NP_416455.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|89108777|ref|AP_002557.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. W3110] gi|170081589|ref|YP_001730909.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238901150|ref|YP_002926946.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253773106|ref|YP_003035937.1| flagellar motor switch protein FliM [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|120345|sp|P06974|FLIM_ECOLI RecName: Full=Flagellar motor switch protein FliM gi|145981|gb|AAA23786.1| FlaAII protein [Escherichia coli] gi|1736611|dbj|BAA15770.1| flagellar motor switching and energizing component [Escherichia coli str. K12 substr. W3110] gi|1788255|gb|AAC75012.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|169889424|gb|ACB03131.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238861113|gb|ACR63111.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253324150|gb|ACT28752.1| flagellar motor switch protein FliM [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448942|gb|ACX39364.1| flagellar motor switch protein FliM [Escherichia coli DH1] gi|315136582|dbj|BAJ43741.1| flagellar motor switch protein FliM [Escherichia coli DH1] Length = 334 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|330826724|ref|YP_004390027.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans K601] gi|329312096|gb|AEB86511.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans K601] Length = 334 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 90/300 (30%), Gaps = 11/300 (3%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 R+ + + + + +IS + + Sbjct: 35 VRDYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNMIRRSPEISVGTVGVQR 88 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 ++ + F+ ++ + I C +L+ +++ L G + ++ R S Sbjct: 89 YNAFLRELVVPTNFNIVAIRPLRGSGLIVCEPSLLFGIIDTLYGGVGKLQTRIEGRDFSA 148 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E ++ +R + I + L + +E V + + Sbjct: 149 TELRVIQRLVNLICEEYKKAWQGIYPLE--LSYQRSEMQPQFANIATPSEIVVSTAFQLE 206 Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 I +++ + + +P TL + S Q + + R+ V + + Sbjct: 207 IGDLSGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVKVLTREIQAAEVTLVAELAR 266 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 T++ ++ +K G I S G ++ C+ G Y IRI + Sbjct: 267 ADATVEQLLAMKPGDFIELDREP--RIRASIEGVPVFECQYGTHNAKYAIRIEQCLRGAD 324 >gi|194471387|ref|ZP_03077371.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457751|gb|EDX46590.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 334 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 96/305 (31%), Gaps = 10/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + P P R+ + + + + + + DI+ Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ D R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ LK G V+P I +G + + + G V Y++R+ Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYSLRVE 318 Query: 302 DRINF 306 IN Sbjct: 319 HLINP 323 >gi|94500287|ref|ZP_01306820.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65] gi|94427586|gb|EAT12563.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65] Length = 331 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 12/301 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + R+ + + ++ + D++ Q Sbjct: 31 EGIKSYDLSSQDRIVRG------RMPTLEMINERFARYTRISMFNFLRRSADVASGGIQI 84 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF IH+ + + LV L++N G ++ R Sbjct: 85 MKFGEYIHTLYVPTSLNMVKVRPLRGTALFIFDAKLVFKLVDNFFGGDGR-HAKIEGREF 143 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E ++ + ++Q+ + + + E + +E V + + Sbjct: 144 TPTELRVVQMVLSQVFTDMKEAWHAVLDLD--FEYYGSEVNPAMANIVSPSEVVVISSFH 201 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + ++ + +P + + Q+ + + + V + + Sbjct: 202 IELDGGGGDLHVALPYSMIEPIREFLDAGVQSDVDEVDDRWVQSLQEDIQSAKVPVHGTV 261 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ +L++V + G VIP E IL ANG I+ +LG N ++I + I Sbjct: 262 VDREISLREVAAFQPGDVIPVDMPED--FILQANGTPIFRGQLGVRDDNLAVKIKEPIKR 319 Query: 307 D 307 Sbjct: 320 K 320 >gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] Length = 349 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + + R+ + + + L + ++S Q Sbjct: 32 PSATNFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 85 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF ++ + + LV L+EN G ++ R Sbjct: 86 MKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREF 145 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + + A + S E E + + + Sbjct: 146 TPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 203 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + ++ F +++P + + + Q+ + + VN + Sbjct: 204 VEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNL 263 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+D++ L++G VIP A++ Y ++GR G+ ++++++I Sbjct: 264 LEMDIALRDLMELQVGDVIPIKMP--EHAVMFVEDLPTYRVKMGRSGEKLAVQVSEKIKR 321 Query: 307 DQ 308 Sbjct: 322 PD 323 >gi|157961196|ref|YP_001501230.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC 700345] gi|157846196|gb|ABV86695.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC 700345] Length = 342 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 96/301 (31%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + + L M ++S Q Sbjct: 31 DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + S I LV L++N G ++ R + Sbjct: 85 KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + I + + E + E V + ++ Sbjct: 145 PTERRIVQLLLKIIFEDYKEAWAPVMEVQ--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 202 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ F + +P + + + Q+ +++ + ++V ID I Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIV 262 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 K TL++V+ K G VIP IL Y C++G+ N ++I ++I Sbjct: 263 EHKLTLREVLEFKAGDVIPVELP--EHIILKVEDLPTYRCKMGKAKDNLALKICEKIPRP 320 Query: 308 Q 308 + Sbjct: 321 E 321 >gi|302392382|ref|YP_003828202.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM 5501] gi|302204459|gb|ADL13137.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM 5501] Length = 333 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 39/307 (12%), Positives = 101/307 (32%), Gaps = 13/307 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + K+ +L K + + + + L ++ + + S Sbjct: 32 TEEKSVKAYDFKHPDKL------SKDQLRTLRIIYENFARLLNTSLSTQLRTMIHVELNS 85 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + I S + + S + + F + + L ++E L G + Sbjct: 86 IEQLSYDEFIRSLPQPTIMSICDFNPLAGEFILEINPRLGYAIVERLFGGQGTPPNNI-- 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + +E+ + K+ + Q + + + P +++ + N+ V Sbjct: 144 RDFTDIEEMVLKKVLKQNLSAFVEAWENVIDLKPRIKNLE--SNPQFTQIVPGNDMVILA 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVN 241 + I + IP L ++ S + ++ + + + Sbjct: 202 TFDAKIAEAEGLINVCIPYIVLEPIVSKLNAQYWFSTSRDSASSEELNKLKDRLSKAKLP 261 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + T+ D++ L+ G VI + A++ KE + + G VG I I+ Sbjct: 262 VIANLGTTNITVADLLDLQPGDVIRMDQKATKEAVVKVGNKEKFIGKPGVVGSKLAIEIS 321 Query: 302 DRINFDQ 308 ++ ++ Sbjct: 322 SVLDKEE 328 >gi|333003041|gb|EGK22595.1| flagellar motor switch protein FliM [Shigella flexneri VA-6] Length = 334 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G ++P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDILPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|262404472|ref|ZP_06081027.1| flagellar motor switch protein FliM [Vibrio sp. RC586] gi|262349504|gb|EEY98642.1| flagellar motor switch protein FliM [Vibrio sp. RC586] Length = 349 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + + R+ + + + L + ++S Q Sbjct: 32 PSATNFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 85 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF ++ + + LV L+EN G ++ R Sbjct: 86 MKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREF 145 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + + A + S E E + + + Sbjct: 146 TPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 203 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + ++ F +++P + + + Q+ + + VN + Sbjct: 204 VEVDGGGGDFHMVMPYSMMEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNL 263 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+D++ L++G VIP A++ Y ++GR G+ ++++++I Sbjct: 264 LEMDIALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKR 321 Query: 307 DQ 308 Sbjct: 322 PD 323 >gi|283785715|ref|YP_003365580.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168] gi|282949169|emb|CBG88777.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168] Length = 334 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 95/305 (31%), Gaps = 10/305 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + P P R+ + + + + + + DI+ Sbjct: 28 GIAGESDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ D R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLREMLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ L+ G V+P I +G + + + G V Y +R+ Sbjct: 261 LVANFADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318 Query: 302 DRINF 306 IN Sbjct: 319 HLINP 323 >gi|319764508|ref|YP_004128445.1| flagellar motor switch protein flim [Alicycliphilus denitrificans BC] gi|317119069|gb|ADV01558.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans BC] Length = 334 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 90/300 (30%), Gaps = 11/300 (3%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 R+ + + + + +IS + + Sbjct: 35 VRDYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNMIRRSPEISVGTVAVQR 88 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 ++ + F+ ++ + I C +L+ +++ L G + ++ R S Sbjct: 89 YNAFLRELVVPTNFNIVAIRPLRGSGLIVCEPSLLFGIIDTLYGGVGKLQTRIEGRDFSA 148 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E ++ +R + I + L + +E V + + Sbjct: 149 TELRVIQRLVNLICEEYKKAWQGIYPLE--LSYQRSEMQPQFANIATPSEIVVSTAFQLE 206 Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 I +++ + + +P TL + S Q + + R+ V + + Sbjct: 207 IGDLSGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVKVLTREIQAAEVTLVAELAR 266 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 T++ ++ +K G I S G ++ C+ G Y IRI + Sbjct: 267 ADATVEQLLAMKPGDFIELDREP--RIRASIEGVPVFECQYGTHNAKYAIRIEQCLRGAD 324 >gi|123442771|ref|YP_001006748.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161335|ref|YP_004297912.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089732|emb|CAL12585.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605256|emb|CBY26754.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp. palearctica Y11] gi|325665565|gb|ADZ42209.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861091|emb|CBX71358.1| flagellar motor switch protein fliM [Yersinia enterocolitica W22703] Length = 334 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + DI+ + Sbjct: 31 ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + +LV ++NL G ++ R Sbjct: 85 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + + I N N+ V T Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 + I ++ F + IP + + + + S + + ++ + + Sbjct: 204 QVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|33596151|ref|NP_883794.1| flagellar motor switch protein FliM [Bordetella parapertussis 12822] gi|33573154|emb|CAE36805.1| flagellar motor switch protein FliM [Bordetella parapertussis] Length = 336 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 32/310 (10%), Positives = 92/310 (29%), Gaps = 9/310 (2%) Query: 4 QSIHKNTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + R L+ + + + + + + + M + DI Sbjct: 21 GESDEKQPAGDEAGAPRAYDLSSPERVVRRRMQTLELINERFARHMRNVLLNFMRRNADI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + K++ + + + NLV ++++L G Sbjct: 81 TVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHT 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R +T E+++ +R + + K + +NE Sbjct: 141 RVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEV 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQL 238 V ++ + +P + + + E + + Sbjct: 199 VVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDTALEEVDQRWAQQLQSQVRSA 258 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++++ +++ +++ +K G V+P +G + G Y + Sbjct: 259 DIDLVAEFGHIPSSIGELMRMKTGDVLPIAVP--ETVTAHVDGVPLMEYGYGVFNGRYAL 316 Query: 299 RITDRINFDQ 308 R+ + IN+D Sbjct: 317 RVQNLINYDD 326 >gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132] gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans ND132] Length = 325 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 96/303 (31%), Gaps = 13/303 (4%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 R+ + + + + M VDI+ S Sbjct: 32 DTGVVAFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALANTMRKRVDINPISID 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + S S + N + + LV L+EN G + ++ R Sbjct: 86 MSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGSQP-KVEGRD 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E+ + +R + A + + E + + ++ V + Sbjct: 145 FTPIEQAIVERVVKIALANMEESWKPVHEVHVEMVR--TEVNPQFAAIVPPSDVVIVVTF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +EN S ++ +P T+ S Q++ I+ F + + V + R Sbjct: 203 EVELENAIGSLIVCLPYATMEPIRSKLHASFQSERLEVDHVWINRFKERLMETPVEMVVR 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + + ++ L+ G +I E G + GRV N + ++ I Sbjct: 263 LGRTSISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKFQGLPGRVKGNKSFKV---IK 319 Query: 306 FDQ 308 ++ Sbjct: 320 EEE 322 >gi|157371194|ref|YP_001479183.1| flagellar motor switch protein FliM [Serratia proteamaculans 568] gi|157322958|gb|ABV42055.1| flagellar motor switch protein FliM [Serratia proteamaculans 568] Length = 333 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S P P R+ + + + + + DI+ Sbjct: 29 SNESEVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L+ + +LV ++NL G ++ Sbjct: 83 IKIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ KR + S + + + N N+ V T Sbjct: 143 REFTPTEQRVIKRMLRLALDAYGDAWSAIYKINVEYVRAE-MQVKFTNITTSPNDIVVTT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 + I ++ F + IP + + + + S + + ++ + + Sbjct: 202 PFQVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELI 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 262 ANFVDIPMRLSKILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHL 319 Query: 304 INF 306 IN Sbjct: 320 INP 322 >gi|242238988|ref|YP_002987169.1| flagellar motor switch protein FliM [Dickeya dadantii Ech703] gi|242131045|gb|ACS85347.1| flagellar motor switch protein FliM [Dickeya dadantii Ech703] Length = 343 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 10/302 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 S + P P R+ + + + + + DI+ Sbjct: 28 SAASADSDIKPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNLLRRSPDIT 81 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + L S +LV ++NL G + Sbjct: 82 AGPIKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTK 141 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ KR + + + + N N+ V Sbjct: 142 VEGREFTHTEQRVVKRMLRLALDAYGDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIV 200 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240 T ++ I N+ F + IP + + ++ + S + ++ + A++ + Sbjct: 201 VTTPFHVEIGNLTGEFNICIPFAMIEPLRELLVNPPLENSRQEDQNWRETLAKQVQHSEL 260 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L V+ LK G V+P + +G + + + G Y +R+ Sbjct: 261 ELVANFVDIPLRLSKVLKLKPGDVLPIEKP--ESLVAHVDGVPVLTGQYGTFKGQYALRV 318 Query: 301 TD 302 Sbjct: 319 ER 320 >gi|153834156|ref|ZP_01986823.1| flagellar motor switch protein FliM [Vibrio harveyi HY01] gi|156975423|ref|YP_001446330.1| flagellar motor switch protein FliM [Vibrio harveyi ATCC BAA-1116] gi|148869526|gb|EDL68524.1| flagellar motor switch protein FliM [Vibrio harveyi HY01] gi|156527017|gb|ABU72103.1| hypothetical protein VIBHAR_03154 [Vibrio harveyi ATCC BAA-1116] Length = 348 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 11/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 ++ R+ + + + + + ++S Q Sbjct: 31 DESAVSFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF ++ + I LV L+EN G ++ R Sbjct: 85 MMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ + + + + S E E + + Sbjct: 145 FTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ ++ F +++P + + + Q+ + VN Sbjct: 203 HIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVN 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + K +L+D++ L+ G VIP A + Y ++GR ++I++ I Sbjct: 263 LLEKDISLRDLMELQPGDVIPIEMP--EHATMFIEDLPTYRVKMGRSEDKMAVQISEEIE 320 Query: 306 F 306 Sbjct: 321 R 321 >gi|157692311|ref|YP_001486773.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032] gi|194014958|ref|ZP_03053575.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061] gi|157681069|gb|ABV62213.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032] gi|194013984|gb|EDW23549.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061] Length = 332 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 95/286 (33%), Gaps = 8/286 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ + I+ +S + I S + + Sbjct: 49 SKDQIRSLTRIHDNFARLLTTHFSAQLRSYIQITVSSVDQVPYEEFIRSIPNMTLLNLFY 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 +S + + + +++ L+G + + + L+ +E K+ Sbjct: 109 VSPLEGRIMLEVNPTIGYAMMDRLMGGIGISHNKTES--LTEIETKIISNMFEGALENYR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P E + NE V I++N I V+ L IP L Sbjct: 167 EAWQSITDIEP--EMADFEVNPQFVQMVSPNETVVVISLNTQIGEVSGVINLCIPHVVLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q++ + ++ + + + + T+++ + L+IG Sbjct: 225 PIIPKLSVHYWMQSERNEPKQQETKAIEKRIMTAKIPVVAELGESEMTVEEFLNLEIGDC 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309 I + K + + GRV + I+I D I ++ Sbjct: 285 IALDKPVNAPLTVMVGNKPKFLGQAGRVNRKQAIQILDHDIRGEED 330 >gi|113969632|ref|YP_733425.1| flagellar motor switch protein FliM [Shewanella sp. MR-4] gi|114046862|ref|YP_737412.1| flagellar motor switch protein FliM [Shewanella sp. MR-7] gi|113884316|gb|ABI38368.1| flagellar motor switch protein FliM [Shewanella sp. MR-4] gi|113888304|gb|ABI42355.1| flagellar motor switch protein FliM [Shewanella sp. MR-7] Length = 343 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 R+ + + + L M ++S Q Sbjct: 32 EARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 85 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + I LV L++N G ++ R + Sbjct: 86 KFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 145 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + I + + + E V + ++ Sbjct: 146 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVINSFHI 203 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ F + +P + + + Q+ ++ + + V D + Sbjct: 204 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDATVV 263 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + TLKDV+ K G +IP ++ Y C++GR N ++I ++I Sbjct: 264 EHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRP 321 Query: 308 Q 308 + Sbjct: 322 E 322 >gi|238764404|ref|ZP_04625354.1| Flagellar motor switch protein fliM [Yersinia kristensenii ATCC 33638] gi|238697430|gb|EEP90197.1| Flagellar motor switch protein fliM [Yersinia kristensenii ATCC 33638] Length = 334 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 10/302 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + P P R+ + + + + + DI+ Sbjct: 30 SETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPI 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + + L + +LV ++NL G ++ R Sbjct: 84 KIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ R + + + I N N+ V T Sbjct: 144 EFTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTP 202 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244 + I ++ F + IP + + + + S + + ++ + + Sbjct: 203 FQVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVA 262 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L ++ L+ G V+P I +G + + + G + Y +R+ I Sbjct: 263 NFVDIPLRLSQILKLQPGDVLPIDKP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHLI 320 Query: 305 NF 306 N Sbjct: 321 NP 322 >gi|119775425|ref|YP_928165.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B] gi|119767925|gb|ABM00496.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B] Length = 342 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 92/301 (30%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + + L M ++S Q Sbjct: 31 SARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + I LV L++N G ++ R + Sbjct: 85 KFGEYVHTLFVPTSLNMVRFQPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + I + + + E V + ++ Sbjct: 145 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVNSFHI 202 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ F + +P + + + Q+ ++ + + V + + Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALKDEIMDVEVGFEATVV 262 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + +L+DV+ ++ G VIP ++ Y C+LG+ + ++I ++I Sbjct: 263 EHQISLRDVMEMQAGDVIPVELP--EYVLMKIEELPTYRCKLGKSREQLALKICEKIPRP 320 Query: 308 Q 308 + Sbjct: 321 E 321 >gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM 6578] Length = 341 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 97/286 (33%), Gaps = 5/286 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + S + + + ++ V + S + I S + Sbjct: 48 SKEQIRTISIMHETFARLTTTSLSAQLRSLVQVHVASVDQLTYEEFIRSIPNPTTIGIIN 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + ++++ L G + +R LS +E + + + +I + Sbjct: 108 MDPLKGSAILEIDPTITYSIIDRLFGGPGDGSVVPRDRDLSDIETTVMEGIMVRILGNMR 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P L + E V + + + +V IP T+ Sbjct: 168 EAWSQVIDLRPRLGQIDT--NPQFAQIVPPTEMVVLVTLETKVGDVEGMMNFCIPYLTIE 225 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + + + + + + VN+ + ++D+++++ G V Sbjct: 226 PIISKLSAQYWYSSVRKGGTTENLAILKERISSVEVNLVVEVGSMNLKMRDILSIQKGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 I R K +L + + C GRVGK +++ ++I Q+ Sbjct: 286 IMLPTRVKEPLVLKIENRPKFYCRPGRVGKKLAVQLVEKIEESQEV 331 >gi|317048606|ref|YP_004116254.1| flagellar motor switch protein FliM [Pantoea sp. At-9b] gi|316950223|gb|ADU69698.1| flagellar motor switch protein FliM [Pantoea sp. At-9b] Length = 335 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + + DIS + + Sbjct: 32 DGDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMALFNLLRRSPDISVGAIK 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + S +LV ++NL G ++ R Sbjct: 86 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R + + + N N+ V Sbjct: 146 FTHTEQRVIRRMLKLALEGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIVVNTPF 204 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 + I N+ F + IP + + ++ + S + D ++ + + Sbjct: 205 QVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSELELIAH 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ LK G V+P I +G + + + G + Y +R+ IN Sbjct: 265 FADVSLRLSRILQLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 322 Query: 306 F 306 Sbjct: 323 P 323 >gi|238758098|ref|ZP_04619278.1| Flagellar motor switch protein fliM [Yersinia aldovae ATCC 35236] gi|238703636|gb|EEP96173.1| Flagellar motor switch protein fliM [Yersinia aldovae ATCC 35236] Length = 334 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + DI+ + Sbjct: 31 ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + +LV ++NL G ++ R Sbjct: 85 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R + + + I N N+ V T Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 + I ++ F + IP + + + + S + + ++ + + Sbjct: 204 QVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLIN 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|225620315|ref|YP_002721572.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae WA1] gi|296126963|ref|YP_003634215.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM 12563] gi|225215134|gb|ACN83868.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae WA1] gi|296018779|gb|ADG72016.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM 12563] Length = 343 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 44/319 (13%), Positives = 101/319 (31%), Gaps = 13/319 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + H+ + K + + + + ++ V I Sbjct: 32 EVEHRKIKIYDFKRPDKF------SKDQIRTLQMMHENFARVTTTSLSAQLRTLVGIHVA 85 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S + I S + S+ + + ++ T+++ L G E+ + Sbjct: 86 SVDQLTYEEFIRSVSNPSTLAIVSMDPLKGSSILEIDPSITFTIIDRLFGGPGESP-KNL 144 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 NR L+ +E + + I +I L + S + P L + N+ V Sbjct: 145 NRELTDIELSVMEGIIVRILGNLREAWSQVIDLRPRLGSIET--NPQFAQMVSPNDMVVL 202 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNV 240 I + + +V IP T+ + + + + K + V Sbjct: 203 ITLETKVADVEGMMNFCIPYITIEPILSKFSAQYWYASIRRGSTSENLKIIKEKLQNIFV 262 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L D++ L+ G V+ F + I ++ + C G G ++ Sbjct: 263 ETSAELGSMQLPLSDILNLQKGDVVKFTDTKITDPVIFKIGNRKKFLCRPGISGSRMAVQ 322 Query: 300 ITDRINFDQKSLKNFLHKR 318 +T ++ + ++ L K Sbjct: 323 LTGVMDGEADITEDDLLKE 341 >gi|261407972|ref|YP_003244213.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10] gi|329929322|ref|ZP_08283075.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5] gi|261284435|gb|ACX66406.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10] gi|328936691|gb|EGG33134.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5] Length = 332 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 41/316 (12%), Positives = 103/316 (32%), Gaps = 13/316 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + + ++L F ++ V I Sbjct: 27 LKKEETQKKIRSYDFKRALRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + I S + V + + N+ +L+ LLG + Sbjct: 81 NVVQVEQLPYDEFIRSIPKMTVLNIFEAEPLVGRMVLEVHPNIAYAMLDRLLGGTGIAPS 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + + ++ +E + +R ++ L + T + SP LE + NE Sbjct: 141 SISS--MTEIETIIMERIFSRAFDSLQEAWKTVLDISPRLEALET--NPQFMQIVSPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 + I+++ I + L IP L ++ + + +D ++ + Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVLEPIMSKLSAHQWFISEKKASVPEEVDALKQRVSK 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + I + + + T+ + + L +G VI + K + G + Sbjct: 257 AKLPIVAELGVSQLTVSEFLGLSVGDVISLNKPMHDGLSIKVGDKLKFIGSPGTIKDRVA 316 Query: 298 IRITDRINFDQKSLKN 313 ++I + + + Sbjct: 317 VQIDEIVIEGAEEFDE 332 >gi|312172110|emb|CBX80367.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC BAA-2158] Length = 336 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + + DI+ + + Sbjct: 33 DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + S +LV ++NL G ++ R Sbjct: 87 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R + ++ + N N+ V T Sbjct: 147 FTHTEQRVIRRMLKLALESYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTR 245 ++ I N+ F + IP + ++ ++ + E+ D ++ + + Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVAN 265 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323 Query: 306 F 306 Sbjct: 324 P 324 >gi|261252329|ref|ZP_05944902.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891] gi|260935720|gb|EEX91709.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891] Length = 349 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 33/304 (10%), Positives = 91/304 (29%), Gaps = 11/304 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + R+ + + + + + ++S Sbjct: 30 TDASAVEFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 Q KF ++ + I LV L+EN G ++ R Sbjct: 84 QMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ + + + + S E E + + Sbjct: 144 EFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSS 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ ++ F +++P + + + Q+ + + VN Sbjct: 202 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRV 261 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ + +L+D++ L+ G +IP A + + ++GR G+ ++++++I Sbjct: 262 QLLEQDISLRDLMELQPGDIIPINMP--EHATMFVEELPTFRTKMGRSGELLAVQVSEKI 319 Query: 305 NFDQ 308 Sbjct: 320 KRPD 323 >gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] Length = 322 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 6/277 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q L + Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + E +E V ++ ++ + +P + Sbjct: 169 QAIMPV--SFEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++Q E + + V + + ++ L+D++ ++ G VIP Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVEL 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L ANG + LG N ++I D I Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGNLALQIIDPIER 321 >gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida] gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1] Length = 322 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 6/277 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q L + Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + E +E V ++ ++ + +P + Sbjct: 169 QAIMPV--SFEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++Q E + + V + + ++ L+D++ ++ G VIP Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVEL 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L ANG + LG N ++I D I Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGNLALQIIDPIER 321 >gi|213053037|ref|ZP_03345915.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 320 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 10/301 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + P P R+ + + + + + + DI+ Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ D R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ LK G V+P I +G + + + G V Y +R+ Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318 Query: 302 D 302 Sbjct: 319 H 319 >gi|327193028|gb|EGE59940.1| flagellar C-ring motor switch protein [Rhizobium etli CNPAF512] Length = 314 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 168/305 (55%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G + Sbjct: 10 AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 69 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 H++ N A+L +WS N + C N VITL+E+LLGA+ ETI + +R LS +E Sbjct: 70 HLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATAETIEEPADRLLSIIE 129 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +I+ VL ++ P+L + D + +EF INM++T+ Sbjct: 130 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPPEDKPDEFAAAINMSLTLA 189 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI L+ Sbjct: 190 GIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWSEQLGDQVRRSHVTLEARIRLQDL 249 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + + Sbjct: 250 TLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 309 Query: 312 KNFLH 316 ++ ++ Sbjct: 310 RHLMN 314 >gi|301029402|ref|ZP_07192496.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1] gi|299877706|gb|EFI85917.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1] Length = 334 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKQLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|167034915|ref|YP_001670146.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1] gi|166861403|gb|ABY99810.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1] Length = 322 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 6/277 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q L + Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + E +E V ++ ++ + +P + Sbjct: 169 QAIMPVT--FEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++Q E + + V + + ++ L+D++ ++ G VIP Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVEL 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L ANG + LG N ++I D I Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGNLALQIIDPIER 321 >gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] Length = 349 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 34/303 (11%), Positives = 92/303 (30%), Gaps = 11/303 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + R+ + + + + + ++S Q Sbjct: 31 DASAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF ++ + I LV L+EN G ++ R Sbjct: 85 MMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ + + + + S E E + + Sbjct: 145 FTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ ++ F +++P + + + Q+ + + VN Sbjct: 203 HIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVD 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +L+D++ L+ G +IP A++ + ++GR G+N ++++++I Sbjct: 263 LLEQDISLRDLMELQPGDIIPVTMP--EHAVMFVEELPTFRVKMGRSGENLAVQVSEKIK 320 Query: 306 FDQ 308 Sbjct: 321 RPD 323 >gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC 14580] gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC 14580] gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2] gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580] gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2] Length = 332 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 96/285 (33%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ + IS +S + I S + + Sbjct: 49 SKDQIRSLTRIHDNFARLLTTYFSAQLRTYIQISVSSVDQVPYEEFIRSIPNMTILNLFE 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + T+++ ++G + ++ + ++ +E K+ Sbjct: 109 VRPLEGRIMMEINPTIAYTMMDRVMGGIGSSHNKIDS--MTEIETKIMSNLFESCLTNYK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P + DF + NE V I++N I +++ L IP L Sbjct: 167 DAWESITEIEPEMSDFEV--NPQFVQMVSPNETVVVISLNTQIGDISGVINLCIPHVVLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q+ + ++ + I + + T+++ + L+IG Sbjct: 225 PIIPKLSVHYWMQSDRIEPKPEETKSIEKRILTAQIPIVAELGSSELTIEEFLNLEIGDC 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + K + + GR+ + I+I D ++ Sbjct: 285 ITLDKSVAEPLTVLVGDKPKFLAQAGRMNRKTAIQILDHDIRGEE 329 >gi|332799187|ref|YP_004460686.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1] gi|332696922|gb|AEE91379.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1] Length = 331 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 98/313 (31%), Gaps = 13/313 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + + K P + K S + + + L ++ V I Sbjct: 27 IKSKELDKKVKPYDFKRPNKF------SKEQLHTLSMIHENFARLLTTYLSAQLRTVVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + ++ I S + + S + + ++ ++++ LLG E Sbjct: 81 NVFFVEQMTYNEFIFSIPNPSLIAVVDFSPLKGAAIMEINPSIAFSIIDRLLGGPGEYSG 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 +L R + +E + ++ ++++ +L+ + LE + NE Sbjct: 141 KL--REPTEIETGIIEKVFSKMTRILSDAWKDIADIQTTLEKLET--NSQFVQLVSPNEA 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V I N + N + IP L + Q+E K Y Sbjct: 197 VALITFNAKVGNSEGMINICIPHIVLEPIIPKLSTRIWLSTSKQEQAETTKQFITEKVYD 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 I + T+ + + L G VI K A + K +S +G Sbjct: 257 TKTEIRAELGRTLITVGEFINLATGDVIALNKNIKDGADIFIKDKLKFSGSIGVHRNKMA 316 Query: 298 IRITDRINFDQKS 310 I+I + + Sbjct: 317 IKIQKKFGEGGEF 329 >gi|304398862|ref|ZP_07380732.1| flagellar motor switch protein FliM [Pantoea sp. aB] gi|304353566|gb|EFM17943.1| flagellar motor switch protein FliM [Pantoea sp. aB] Length = 335 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 38/306 (12%), Positives = 90/306 (29%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + P P R+ + + + + + + DIS Sbjct: 27 KQNGPEGDIRPYDPNTQRRVV------RERLQALEIINERFARSFRMALFNLLRRSPDIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + S +LV ++NL G + Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ +R + + + N N+ V Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240 + I N+ F + IP + + ++ + S + D ++ + Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L ++ LK G V+P I + + + + G + Y +R+ Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKP--ERIIAHVDSVPVLTSQYGTMNGQYALRV 317 Query: 301 TDRINF 306 IN Sbjct: 318 EHLINP 323 >gi|308187297|ref|YP_003931428.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1] gi|308057807|gb|ADO09979.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1] Length = 335 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 38/306 (12%), Positives = 90/306 (29%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + P P R+ + + + + + + DIS Sbjct: 27 KQNGPEGDIRPYDPNTQRRVV------RERLQALEIINERFARSFRMTLFNLLRRSPDIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + S +LV ++NL G + Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ +R + + + N N+ V Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240 + I N+ F + IP + + ++ + S + D ++ + Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L ++ LK G V+P I + + + + G + Y +R+ Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKP--ERIIAHVDSVPVLTSQYGTMNGQYALRV 317 Query: 301 TDRINF 306 IN Sbjct: 318 EHLINP 323 >gi|297584047|ref|YP_003699827.1| flagellar motor switch protein FliM [Bacillus selenitireducens MLS10] gi|297142504|gb|ADH99261.1| flagellar motor switch protein FliM [Bacillus selenitireducens MLS10] Length = 333 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 44/311 (14%), Positives = 108/311 (34%), Gaps = 13/311 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + + + L ++ V I Sbjct: 27 LKKEETQKKIKTYDFKRALRF------SKDQIRSLTRIHENFARLLTTQLSAQLRTFVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S S + I S + + + F + + N+ +L+ +LG E Sbjct: 81 SVASVDQLPYDEFIRSVPKQTILNVFEPYPLDGRFVLEVNPNIAYAMLDRMLGGQGEAYN 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ N L+ +E K+ + + + + +E P ++D + NE Sbjct: 141 KVDN--LTEIEAKIMTQLFQRTLETFREAWLSVEEIDPMMDDLEV--NPQFLQLVSPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V I+ + TI + + +P + Q K + + I+ + Sbjct: 197 VVVISFSTTIGESSGMINICLPHVVIEPLLPKLSVHLWMQTKKKERKPGEIEALELNIKR 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 +++ ++ + T+++ V L +G I ++ G Y + G+V ++ Sbjct: 257 APLDVAVQLGQSEITIEEFVHLAVGDTIELNQSIDELLRMTVGGSPKYKVQPGKVKEHLA 316 Query: 298 IRITDRINFDQ 308 ++I + I ++ Sbjct: 317 VQIVEDIEEEE 327 >gi|269961627|ref|ZP_06175989.1| flagellar motor switch protein [Vibrio harveyi 1DA3] gi|269833668|gb|EEZ87765.1| flagellar motor switch protein [Vibrio harveyi 1DA3] Length = 348 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 85/295 (28%), Gaps = 11/295 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + I LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + + S E E + + ++ ++ Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + VN + K Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L+D++ L+ G VIP A + Y ++GR ++I++ I Sbjct: 269 SLRDLMELQPGDVIPIEMP--EHATMFIEDLPTYRVKMGRSEDKMAVQISEEIER 321 >gi|117919797|ref|YP_868989.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3] gi|117612129|gb|ABK47583.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3] Length = 343 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 R+ + + + L M ++S Q Sbjct: 32 EARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 85 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + I LV L++N G ++ R + Sbjct: 86 KFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 145 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + I + + + E V + ++ Sbjct: 146 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVINSFHI 203 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ F + +P + + + Q+ ++ + + V D + Sbjct: 204 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDASVV 263 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + TLKDV+ K G +IP ++ Y C++GR N ++I ++I Sbjct: 264 EHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRP 321 Query: 308 Q 308 + Sbjct: 322 E 322 >gi|212634374|ref|YP_002310899.1| flagellar motor switch protein FliM [Shewanella piezotolerans WP3] gi|212555858|gb|ACJ28312.1| Flagellar motor switch protein FliM [Shewanella piezotolerans WP3] Length = 342 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + + L M ++S Q Sbjct: 31 DARAYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + S I LV L++N G ++ R + Sbjct: 85 KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + I + + + + E V + ++ Sbjct: 145 PTERRIVQLLLKIIFEDYKEAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 202 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ F + +P + + + Q+ +++ + ++V ID + Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATVV 262 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + TL+DV+ K G VIP IL Y C++G+ +N ++I ++I Sbjct: 263 EHQVTLRDVLEFKAGDVIPVELP--EHIILKVEDLPTYRCKMGKTKENLALKICEQIQRP 320 Query: 308 Q 308 + Sbjct: 321 E 321 >gi|322833203|ref|YP_004213230.1| flagellar motor switch protein FliM [Rahnella sp. Y9602] gi|321168404|gb|ADW74103.1| flagellar motor switch protein FliM [Rahnella sp. Y9602] Length = 340 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 94/308 (30%), Gaps = 10/308 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P P R+ + + + + + + DI+ + + Sbjct: 37 DDGVKPFDPTTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIK 90 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + +LV ++NL G ++ R Sbjct: 91 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 150 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ KR + S + S + N N+ V T Sbjct: 151 FTHTEQRVIKRMLRLALDAYEDAWSGVYKLSVEYVRAE-LQIKFTNITSSPNDIVVTTPF 209 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I ++ F + IP + + + S N+ + + Q + + Sbjct: 210 HVEIGALSGDFNICIPFSMIEPLRELLTNPPVENSRNEESQWRENLVHQVQQSELELVAN 269 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L ++ LK G V+P I +G + + + G + + Y +R+ IN Sbjct: 270 FVEIPLRLSQILKLKPGDVLPIEKP--DRLIAHVDGVPVLTSQYGTLNEQYALRVEHLIN 327 Query: 306 FDQKSLKN 313 SL Sbjct: 328 PILNSLDE 335 >gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13] Length = 332 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 111/312 (35%), Gaps = 13/312 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ ++ K R K + + + + + L F ++ + I Sbjct: 28 LKKENQEKKVKVYDFKRALRF------SKDQIRNLTRIHENFARLLTTYFSAQLRTYIQI 81 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S S + I S + + + ++ + + + +L+ LG + Sbjct: 82 SVASVDQLPYEEFIRSIPKMTILNVFEVAPLEGRVVLEINPTIAYAMLDRQLGGKGTGVN 141 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ + L+ +E KL + T + P L D + NE Sbjct: 142 KVDS--LTEIETKLMTTLFEGAIENFGEAWDTIADIQPFLSDLEV--NPQFLQLVSPNET 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V I+MN+TI V + IP L + K++ + + I + Sbjct: 198 VIVISMNITIGEVTGMINICIPHVVLEPVIPKLSAHYWMEEKNKVRQDHEIATLEKAIRA 257 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + T + + + D++ + IG V+P + I+ + K + ++G+V KN Sbjct: 258 TALTVTTELGHSEISFSDLLNITIGDVLPLQQKIDEPIIVKVDNKPSFYGQVGQVKKNMA 317 Query: 298 IRITDRINFDQK 309 ++I ++I + Sbjct: 318 VQILEKIKEGYE 329 >gi|15642125|ref|NP_231757.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586821|ref|ZP_01676603.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80] gi|121727171|ref|ZP_01680338.1| flagellar motor switch protein FliM [Vibrio cholerae V52] gi|147675314|ref|YP_001217648.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|153213269|ref|ZP_01948681.1| flagellar motor switch protein FliM [Vibrio cholerae 1587] gi|153803040|ref|ZP_01957626.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3] gi|153818973|ref|ZP_01971640.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457] gi|153822893|ref|ZP_01975560.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|153825557|ref|ZP_01978224.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2] gi|153828607|ref|ZP_01981274.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39] gi|227082251|ref|YP_002810802.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2] gi|229507789|ref|ZP_04397294.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286] gi|229511974|ref|ZP_04401453.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|229513777|ref|ZP_04403239.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21] gi|229519110|ref|ZP_04408553.1| flagellar motor switch protein FliM [Vibrio cholerae RC9] gi|229528862|ref|ZP_04418252.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)] gi|229607334|ref|YP_002877982.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236] gi|254226360|ref|ZP_04919949.1| flagellar motor switch protein FliM [Vibrio cholerae V51] gi|254291362|ref|ZP_04962155.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226] gi|254849211|ref|ZP_05238561.1| flagellar motor switch protein FliM [Vibrio cholerae MO10] gi|255745135|ref|ZP_05419084.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101] gi|262153475|ref|ZP_06028605.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1] gi|262167485|ref|ZP_06035191.1| flagellar motor switch protein FliM [Vibrio cholerae RC27] gi|262191375|ref|ZP_06049565.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93] gi|298497852|ref|ZP_07007659.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757] gi|9656676|gb|AAF95271.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548988|gb|EAX59027.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80] gi|121630416|gb|EAX62809.1| flagellar motor switch protein FliM [Vibrio cholerae V52] gi|124116069|gb|EAY34889.1| flagellar motor switch protein FliM [Vibrio cholerae 1587] gi|124121438|gb|EAY40181.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3] gi|125621110|gb|EAZ49455.1| flagellar motor switch protein FliM [Vibrio cholerae V51] gi|126510468|gb|EAZ73062.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457] gi|126519589|gb|EAZ76812.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|146317197|gb|ABQ21736.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|148875878|gb|EDL74013.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39] gi|149740708|gb|EDM54807.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2] gi|150422692|gb|EDN14646.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226] gi|227010139|gb|ACP06351.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2] gi|227014022|gb|ACP10232.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|229332636|gb|EEN98122.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)] gi|229343799|gb|EEO08774.1| flagellar motor switch protein FliM [Vibrio cholerae RC9] gi|229348958|gb|EEO13915.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21] gi|229351939|gb|EEO16880.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|229355294|gb|EEO20215.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286] gi|229369989|gb|ACQ60412.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236] gi|254844916|gb|EET23330.1| flagellar motor switch protein FliM [Vibrio cholerae MO10] gi|255736965|gb|EET92361.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101] gi|262024057|gb|EEY42752.1| flagellar motor switch protein FliM [Vibrio cholerae RC27] gi|262030712|gb|EEY49346.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1] gi|262032750|gb|EEY51298.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93] gi|297542185|gb|EFH78235.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757] gi|327484654|gb|AEA79061.1| Flagellar motor switch protein FliM [Vibrio cholerae LMA3894-4] Length = 349 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + + R+ + + + L + ++S Q Sbjct: 32 PSATNFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 85 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF ++ + + LV L+EN G ++ R Sbjct: 86 MKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREF 145 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + + A + S E E + + + Sbjct: 146 TPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 203 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + ++ F +++P + + + Q+ + + VN + Sbjct: 204 VEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNL 263 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+D++ L++G VIP A++ Y ++GR G+ ++++++I Sbjct: 264 LEMDIALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKR 321 Query: 307 DQ 308 Sbjct: 322 PD 323 >gi|15615009|ref|NP_243312.1| flagellar motor switch protein FliM [Bacillus halodurans C-125] gi|10175066|dbj|BAB06165.1| flagellar motor switch protein [Bacillus halodurans C-125] Length = 330 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 104/285 (36%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + S + + + L F ++ V IS S + I S + + + Sbjct: 48 SKDQIRSISRIHENFARLLTTYFSAQLRTFVQISVASVDQLPYEEFIRSIPKMTILNVFE 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + F I + N+ +L+ LLG ++ ++ N L+ +E ++ + + Sbjct: 108 PAPLDGRFLIEVNPNVAYAMLDRLLGGQGVSVNKVDN--LTEIETRIMSQLFQRTLDSFQ 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + ST E P ++ + NE V I+++ TI + + +P L Sbjct: 166 EAWSTVIELEPEMDAVEV--NPQFLQMVSPNETVVVISLSTTIAETSGMINICLPHVVLE 223 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + Q K + + +D + Q + I T + + T+ + + L IG V Sbjct: 224 EVLPKLSVHYWMQEKKKQRQPGELDSIEHRVRQAPLLIQTELGRSEITIHEFLHLGIGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + G Y + G+ + +++TD I + Sbjct: 284 IELDQSIHEPLNVRVGGHLKYLAQPGKKKNHLAVQVTDVIEEAAE 328 >gi|310767337|gb|ADP12287.1| flagellar motor switch protein [Erwinia sp. Ejp617] Length = 336 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + + DI+ + + Sbjct: 33 DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + S +LV ++NL G ++ R Sbjct: 87 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R + ++ + N N+ V T Sbjct: 147 FTHTEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I N+ F + IP + ++ S + E+ D ++ + + Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVAN 265 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323 Query: 306 F 306 Sbjct: 324 P 324 >gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619] gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619] Length = 322 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 89/277 (32%), Gaps = 6/277 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q L + Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFIDLKEAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + E +E V ++ ++ + +P + Sbjct: 169 QAIMPVN--FEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++Q E + ++V + + ++ L+DV+ ++ G VIP Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVSVPLSATVARRQLKLRDVLHMQPGDVIPVEL 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L ANG + LG N ++I D I Sbjct: 287 P--EHLVLRANGVPSFKARLGSHKGNLALQIIDPIER 321 >gi|91223552|ref|ZP_01258817.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01] gi|269965696|ref|ZP_06179809.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91191638|gb|EAS77902.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01] gi|269829764|gb|EEZ84000.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 348 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 85/295 (28%), Gaps = 11/295 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + I LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + + S E E + + ++ ++ Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + VN + K Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L+D++ L+ G +IP A + Y ++GR ++I++ I Sbjct: 269 SLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYRVKMGRSEDKLAVQISEEIER 321 >gi|42524697|ref|NP_970077.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus HD100] gi|39576907|emb|CAE78136.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus HD100] Length = 333 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 33/306 (10%), Positives = 95/306 (31%), Gaps = 10/306 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G+ + R+ + + + + I+ Sbjct: 36 GKVDERKIVSYDLTSQDRIIRG------RLPQLEVIYEKFMRAFRVSLSSALRKIASITL 89 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 TS + KF I++ S + + + L L+++ G + ++ Sbjct: 90 TSTEFLKFGEFINTLPMPTCMSVLRFGNLRGSALFVIESKLAYALVDSFFGGADRPYTKI 149 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 + + +E + ++ + + ++ ++ + + + V Sbjct: 150 DGKDFTPIELSIVQKVVGLAINDMEMAWASIEKIGCSFVR--TEVNPQFVGIVPPTDVVI 207 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSED-LIDPFARKTYQLNV 240 ++ +EN + ++IP T+ Q +++ + + + ++ Sbjct: 208 ASTFDVELENATGTISIVIPYATIEPIKQKLQTGFQVETDQTDKKLWTAIIQEQLLETDM 267 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I + + LKD++ LK+G VIP ++ G + G +++ Sbjct: 268 EIKVNLGETEIKLKDLMNLKVGDVIPLDQDASGEFDVAVEGVRKFKGYYGIHHGTVAVQV 327 Query: 301 TDRINF 306 T + Sbjct: 328 TRPVEK 333 >gi|288553053|ref|YP_003424988.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4] gi|288544213|gb|ADC48096.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4] Length = 330 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 104/285 (36%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + L F ++ V IS S + I S + + + Sbjct: 48 SKDQVRSLTRIHENFARLLTTYFSAQLRTFVQISVASVDQLPYEEFIRSIPKMTILNVFE 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + N+ +L+ LLG +I ++ N L+ +E ++ + + Sbjct: 108 PYPLEGRLLMEVNPNVAYAMLDRLLGGKGISINKIEN--LTEIETRIMSQLFQRTLDSFE 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S+ E P +E+ + NE V I+++ TI + + +P L Sbjct: 166 EAWSSVVEMDPVMEEIEV--NPQFLQMVSPNETVVVISLSTTIAETSGMINICLPHVVLE 223 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + Q K + + K + + I + + + T+ + + L G V Sbjct: 224 EVLPKLSVHYWMQEKKKQHQPGEKEAIEAKIKKAPLLIQSELGRSEITINEFLQLGEGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I +++ G++ + + G++ +++TD I + Sbjct: 284 IELDQLINEPLLVTVEGEKKFYAQPGKMKNKMAVQVTDVIEEAED 328 >gi|304438436|ref|ZP_07398376.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368519|gb|EFM22204.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 333 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 94/286 (32%), Gaps = 8/286 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + L + + L + +DI S + + + S V + Sbjct: 49 SKDQMRTLFMLHESFSRLLNTYLSASLRTMIDIEVLSVEQMTYQEFVQSMANPSVIGILA 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L N I S ++ + ++ + G + R L+ +E + +R I ++ Sbjct: 109 LPPLKGNIIIELSTDISLAYIDRIFGGEGRPGVKP--RVLTDIEAAVMRRFIDTVTNYFR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S E PN E + ++ V I +++ + V + IP L Sbjct: 167 EAWSNVVEFRPNFETMET--NPQFAQIVPPSDMVVLITIHIKMGEVEGMMNICIPYLVLE 224 Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +S + S + + RK + +V ++ T+ + +TL G Sbjct: 225 PVMSKLTTSFWVASSMDRESSPEQVAELQRKIERTSVPFTVQLGEIHVTINEFLTLGFGD 284 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+ K + + G GK ++I+ I + Sbjct: 285 VLQLDTLTKDELVCYVGSNPKFLARPGTAGKRMAVQISGIIEGEDD 330 >gi|251797432|ref|YP_003012163.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2] gi|247545058|gb|ACT02077.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2] Length = 333 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 40/312 (12%), Positives = 104/312 (33%), Gaps = 13/312 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + + + R K + + + + ++L F ++ V I Sbjct: 27 LKKEEVTRKVRVYDFKRATRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + I S + + + + N+ +L+ +LG Sbjct: 81 NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRMLGGQGMAPS 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ N L+ +E + +R A+ L + T + SP LE + NE Sbjct: 141 KINN--LTEIETIIMERIFARAFESLQEAWKTVIDISPRLEALET--NPQFMQIVSPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 + I+++ I + L IP + ++ + + + ++ ++ + Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVIEPIMPRLSAHHWFVSQKKERIPEEVEMLEQRVSK 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + I + T+K+ + L +G VI + K + G V Sbjct: 257 AKLPIVAELGESVITIKEFLGLAVGDVISLNKPIDDGLRIKVGEKLKFIGSPGSVKDRIA 316 Query: 298 IRITDRINFDQK 309 +++ ++ + Sbjct: 317 VQVDLVVSEGAE 328 >gi|254228441|ref|ZP_04921867.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|262393595|ref|YP_003285449.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|151939029|gb|EDN57861.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|262337189|gb|ACY50984.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] Length = 348 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 85/295 (28%), Gaps = 11/295 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + I LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + + S E E + + ++ ++ Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + VN + K Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L+D++ L+ G +IP A + Y ++GR ++I++ I Sbjct: 269 SLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYRVKMGRSEDKLAVQISEEIER 321 >gi|157376191|ref|YP_001474791.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3] gi|157318565|gb|ABV37663.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3] Length = 341 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 92/301 (30%), Gaps = 11/301 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + + L M ++S Q Sbjct: 30 DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 83 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + S I LV L++N G ++ R + Sbjct: 84 KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 143 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ + + I + + + E V + ++ Sbjct: 144 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 201 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ F + +P + + + Q+ +++ + ++V ID I Sbjct: 202 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALKDEIMDVDVGIDATIV 261 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + TLKDV+ K G VI ++ Y C+LG N +RI + I Sbjct: 262 EHQVTLKDVMEFKQGDVITVELP--EHIVMRVEDLPTYRCKLGTARDNLALRICETIPRP 319 Query: 308 Q 308 + Sbjct: 320 E 320 >gi|292487985|ref|YP_003530862.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430] gi|292899205|ref|YP_003538574.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291199053|emb|CBJ46164.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291553409|emb|CBA20454.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430] Length = 336 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + + DI+ + + Sbjct: 33 DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + S +LV ++NL G ++ R Sbjct: 87 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R + ++ + N N+ V T Sbjct: 147 FTHTEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTR 245 ++ I N+ F + IP + ++ ++ + E+ D ++ + + Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVAN 265 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323 Query: 306 F 306 Sbjct: 324 P 324 >gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus JW 200] gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus JW 200] Length = 332 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 98/284 (34%), Gaps = 6/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L + V+++ S + +S + Sbjct: 50 SKEQLRTLQMIFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIID 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + F + +NN +L+ +LG + +L +R + +E L + + QI + Sbjct: 110 AAPLEGPFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQILPLFK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + +P+L + NE V +++ I +P TL Sbjct: 168 EPWSNILDINPSLIRVET--NSQFAQIISPNETVALCTLSIKINETEGIMNFCMPHLTLE 225 Query: 208 KTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + + + K + + + ++ T+K+ + L+IG +I Sbjct: 226 PIVPKLTTKFWFSSMKKEDKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLELEIGDII 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K + + K + G Y++RIT+ I + Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329 >gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus B316] gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus B316] Length = 327 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 39/310 (12%), Positives = 100/310 (32%), Gaps = 13/310 (4%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 + K A+ K + + Y + L + +V +S Sbjct: 28 QAADEKKVKDYDFKRPAKF------SKEHLRTLEMIYEHYGRLLSTTLPLYLRKNVQVSV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + ++ +S ++ + + + N+ + ++ +LG T+ + Sbjct: 82 ANSETVTYSEFSNALSNPVILGVINFLPLQGTIILELQANIGFSFIDRMLGGEGGTLDKP 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + +E L ++ + ++ + +P +E + + + Sbjct: 142 --RPFTDIEMPLIEKLVTICMQLMVEPWQNVVAINPVMERIET--NPQFAQVISPTDMIA 197 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLN 239 + +N+ I + + +P TL +N ED D +++ Sbjct: 198 IVTLNIKIGDTEGLMNVCLPYFTLESVMDKLNTKFWFSTMQKNADEDYEDTLESMVKRVD 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + ++ D V L+ G +I +R T + ++ G Y +R Sbjct: 258 VPVKAILGKCNVSVSDFVHLQAGDIIRLDNRVNTDMQVYVGNIFKFTALPGTAKDKYAVR 317 Query: 300 ITDRINFDQK 309 IT + + + Sbjct: 318 ITSVVREEDE 327 >gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis Aspo-2] gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis Aspo-2] Length = 325 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 96/303 (31%), Gaps = 13/303 (4%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 R+ + + + + M VDI+ S Sbjct: 32 DSGVVSFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALANTMRKRVDINPISID 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + S S + N + + LV L+EN G + ++ R Sbjct: 86 MSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGSQP-KVEGRD 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E+ + +R + A + + E L + ++ V + Sbjct: 145 FTPIEQAIVERVVKIALANMEESWKPVHEVHVELVR--TEVNPQFAAIVPPSDVVIVVTF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +EN S ++ +P T+ S Q++ I+ F + + V + R Sbjct: 203 EVELENAIGSLIVCLPYATMEPIRSKLHASFQSERLEVDHVWINRFKERLMETPVEMVIR 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + + ++ L+ G +I E G + GRV N + ++ I Sbjct: 263 MGRTTISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKFQGLPGRVKGNKSFQV---IK 319 Query: 306 FDQ 308 ++ Sbjct: 320 EEE 322 >gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] Length = 330 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 99/284 (34%), Gaps = 6/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + L + V+++ S + +S + Sbjct: 48 SKEQLRTLQMIFENFSRSLTSFLSGYLRTIVNVAVVSVDQLTYYEFSNSLNNPVFIAIID 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 S F + +NN +L+ LLG + + +R + +E L + + QI +L Sbjct: 108 ASPLEGPFLLELNNNTTYAILDRLLGGMGK--GEFLDRDYTEIEVNLLTKIVKQILPLLE 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + +P+L + NE V +++ I +P TL Sbjct: 166 EPWSNIIDLTPSLMRVET--NSQFAQIISPNETVALCTLSIKINETEGMMNFCMPHLTLE 223 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + + + K + + + ++ T+ D++ ++G VI Sbjct: 224 PIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTYIPLTVQLGSTTVTVGDLLKFEVGDVI 283 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 R + + K + G K Y+++IT+ I + Sbjct: 284 MLDKRYNEPVEVIIDKKVKFKGIPGIKSKRYSVKITEVIYKGDE 327 >gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] Length = 332 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ R+ + + ++ + + D+S Sbjct: 27 ETDDTGVKNYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRNADVSTG 80 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 Q KF IH+ + + LV L++N G ++ Sbjct: 81 GVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGR-HAKIE 139 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E ++ + + Q+ + + + E +E V Sbjct: 140 GREFTPTETRIVQMVLNQVFHDMKEAWHAVLQVE--FEYLSSEVNPAMANIVSPSEVVVV 197 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 ++ ++ +P + + + Q+ ++ E ++ ++NV I Sbjct: 198 STFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDERWVNALQEDIKEVNVPI 257 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +T + ++ +L+D+ +K G VIP ++ANG IY LG +RI D Sbjct: 258 NTTVCRRRISLRDIARMKAGDVIPVEIP--EHLTVTANGIPIYKATLGTRDGKLALRIHD 315 Query: 303 R 303 R Sbjct: 316 R 316 >gi|307264879|ref|ZP_07546441.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii Rt8.B1] gi|306920137|gb|EFN50349.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii Rt8.B1] Length = 332 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 97/284 (34%), Gaps = 6/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L + V+++ S + +S + Sbjct: 50 SKEQLRTLQMIFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIID 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + F + +NN +L+ +LG + +L +R + +E L + + QI + Sbjct: 110 AAPLEGPFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQILPLFK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + +P+L + NE V +++ I +P TL Sbjct: 168 EPWSNILDINPSLIRVET--NSQFAQIISPNETVALCTLSIKINETEGMMNFCMPHLTLE 225 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + + + K + + + ++ T+K+ + +IG +I Sbjct: 226 PIVPKLTTKFWFSSMKKEDKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLEFEIGDII 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K + + K + G Y++RIT+ I + Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329 >gi|260886644|ref|ZP_05897907.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] gi|330839524|ref|YP_004414104.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] gi|260863787|gb|EEX78287.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] gi|329747288|gb|AEC00645.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] Length = 334 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 102/290 (35%), Gaps = 8/290 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + L + + L + V++ S + + + S V + Sbjct: 49 SKDQIRTLNMLYENFARLLNTHLSTHLRTMVNVEVVSVEQLTYQEFLQSLSNPSVIGVMA 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L N + + + ++ + G E + R L+ +E+ + ++ IA+ S L Sbjct: 109 LPPLKGNIIMEVNTGIAFAYIDRVFGGLGENTLKP--RILTEIEEAVMRKFIAKASEFLK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S E +P LE ++ V + + + I V L IP L Sbjct: 167 ESWSNVIEINPILEAIEA--NPGFVQIVPPSDMVIIVTVQVKIGEVEGFMTLCIPYLVLE 224 Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +S + +++ + D I +K ++ + + + T+++ +TL G Sbjct: 225 PVMSKLSTSFWVAASVAKDNNPDKIRALEKKIHKSPIPLIVELGTIDMTIREFLTLGFGD 284 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 V+ + K + K + C G GK ++IT + Sbjct: 285 VLQLDTKVKDELKILVGQKPKFLCRPGTQGKRSAVQITQVAFEGDEDTDE 334 >gi|270262388|ref|ZP_06190659.1| flagellar motor switch protein FliM [Serratia odorifera 4Rx13] gi|270043072|gb|EFA16165.1| flagellar motor switch protein FliM [Serratia odorifera 4Rx13] Length = 333 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S P P R+ + + + + + DI+ Sbjct: 29 SNESEVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L+ + +LV ++NL G ++ Sbjct: 83 IRIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ KR + S + + + N N+ V T Sbjct: 143 REFTPTEQRVIKRMLRLALDAYGDAWSAIYKINVEYVRAE-MQVKFTNITTSPNDIVVTT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 + I ++ F + IP + + + + S + + ++ + + Sbjct: 202 PFQVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSQWRETLVKQVQHSELELI 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 262 ANFVDIPMRLSKILKLQPGDVLPIDKP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHL 319 Query: 304 INF 306 IN Sbjct: 320 INP 322 >gi|258621111|ref|ZP_05716145.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|262170887|ref|ZP_06038565.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451] gi|258586499|gb|EEW11214.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|261891963|gb|EEY37949.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451] Length = 349 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + L + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + + LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + A + S E E + + ++ ++ Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + + VN + Sbjct: 209 GGGDFHMVMPYSMMEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L+D++ L++G VIP A++ Y ++GR G+ ++++++I Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|86356304|ref|YP_468196.1| flagellar C-ring protein [Rhizobium etli CFN 42] gi|86280406|gb|ABC89469.1| flagellar C-ring protein [Rhizobium etli CFN 42] Length = 316 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 166/305 (54%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 + P LLA+LTG LGD+ + KI S+ G +Y +FLP I K + LDV +SY C+ G + Sbjct: 12 AMDPALLAKLTGGLGDRGRVAKICSAFGDVYGEFLPDIIKSETGLDVTVSYLGCEIGYKN 71 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 H++ N A+L +WS N + C N VITL+E+LLGA+ +TI + R LS +E Sbjct: 72 HLVDDLSHNVTLVDATLRNWSQNVTLACGNGFVITLMEHLLGATADTIEEPAERLLSVIE 131 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +I+ VL ++ P+L + D + +EF INM++T+ Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPAEDKPDEFAAAINMSITLA 191 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + S F LIIPQ LLKT + + ++ S + + + + +V ++ +I L+ Sbjct: 192 GIVSEFSLIIPQTALLKTKVTPPKPKRQTGGNSPEWTEQLGDQVRRSHVTLEAKIRLQDL 251 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 TL+ + L G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + + Sbjct: 252 TLRTISKLMAGDVIPFHDSGDVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELI 311 Query: 312 KNFLH 316 ++ ++ Sbjct: 312 RHLMN 316 >gi|104782811|ref|YP_609309.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48] gi|95111798|emb|CAK16522.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48] Length = 322 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 87/277 (31%), Gaps = 6/277 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q L + Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + E +E V ++ ++ + +P + Sbjct: 169 QAIMPVN--FEYINSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++Q E + + V + + ++ L+D++ ++ G VIP Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMSATVARRQLKLRDILHMQPGDVIPVEL 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L ANG + LG ++I D I Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGTLALQIIDPIER 321 >gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040364|gb|ACT57160.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 318 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI Sbjct: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP Sbjct: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF Sbjct: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV Sbjct: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI Sbjct: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 Query: 301 TDRINFDQKSLKNFLHKR 318 TDRINFDQKSLKNFLHKR Sbjct: 301 TDRINFDQKSLKNFLHKR 318 >gi|229524128|ref|ZP_04413533.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis VL426] gi|297582024|ref|ZP_06943943.1| flagellar motor switch protein FliM [Vibrio cholerae RC385] gi|229337709|gb|EEO02726.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis VL426] gi|297533719|gb|EFH72561.1| flagellar motor switch protein FliM [Vibrio cholerae RC385] Length = 349 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + L + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + + LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + A + S E E + + ++ ++ Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + + VN + Sbjct: 209 GGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L+D++ L++G VIP A++ Y ++GR G+ ++++++I Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFIEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|293395596|ref|ZP_06639879.1| flagellar motor switch protein FliM [Serratia odorifera DSM 4582] gi|291421915|gb|EFE95161.1| flagellar motor switch protein FliM [Serratia odorifera DSM 4582] Length = 334 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 89/301 (29%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + DI+ + Sbjct: 31 DSDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIR 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L+ + +LV ++NL G ++ R Sbjct: 85 IQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ KR + S + + N N+ V T Sbjct: 145 FTPTEQRVIKRMLRLALDAYGDAWSAIYQIDVEYVRAE-MQVKFTNITTSPNDIVVTTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245 + I ++ F + IP + + + + S + + ++ + + Sbjct: 204 QVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSRWRETLVKQVQHSELELIAN 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L V+ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 264 FVDIPMRLSKVLKLQPGDVLPIDKP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|258626185|ref|ZP_05721033.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|258581540|gb|EEW06441.1| flagellar motor switch protein [Vibrio mimicus VM603] Length = 349 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + L + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + + LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + A + S E E + + ++ ++ Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + + VN + Sbjct: 209 GGGDFHMVMPYSMMEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L+D++ L++G VIP A++ Y ++GR G+ ++++++I Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|89094448|ref|ZP_01167388.1| flagellar motor switch protein [Oceanospirillum sp. MED92] gi|89081340|gb|EAR60572.1| flagellar motor switch protein [Oceanospirillum sp. MED92] Length = 325 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 97/303 (32%), Gaps = 12/303 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + R+ + + ++ + D++ Q Sbjct: 34 EGDVRTYDLASHERIVRG------RMPTLEMVNERFARYTRISLFNLLRRAADVTVGGVQ 87 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 K+ IH+ + ++ LV L++N G ++ R Sbjct: 88 VMKYGDYIHTLYVPTSMNLIRVNPLRGTALFIMDAKLVFKLVDNFFGGDGR-HAKIEGRE 146 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E +L + + Q L + + +E + + E V Sbjct: 147 FTPTETRLIHKALEQFFLDLEEAWNPVKEL--SFDHLGHEMNPAMANVINPTEVVVVSTF 204 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +E + F + +P L + Q+ + + E R + ++ Sbjct: 205 QVDLEGGSGEFHVAMPYSMLEPIRDLLVSGFQSGEDEKDERWQVALQRDILMAGLPLEMT 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + ++ TL+DVV L+ G +IP L AN +Y+C +G N +++ ++I Sbjct: 265 LAQQEMTLRDVVDLQAGDIIPIELP--ETFELKANKVPVYNCTMGVSRGNLAVKVVNQIE 322 Query: 306 FDQ 308 + Sbjct: 323 RPK 325 >gi|190890355|ref|YP_001976897.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] gi|190695634|gb|ACE89719.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] Length = 316 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 167/305 (54%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G + Sbjct: 12 AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 H++ N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 72 HLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +I+ VL ++ P+L + D + +EF INM++T+ Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARARPPEDKPDEFAAAINMSLTLA 191 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + S F LI+PQ LLKT + + ++ S + + + + +V ++ RI L+ Sbjct: 192 GIVSEFSLIVPQTALLKTKVTPPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQDL 251 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + + Sbjct: 252 TLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311 Query: 312 KNFLH 316 ++ ++ Sbjct: 312 RHLMN 316 >gi|300871253|ref|YP_003786126.1| flagellar motor switch protein FliM [Brachyspira pilosicoli 95/1000] gi|300688954|gb|ADK31625.1| flagellar motor switch protein, FliM [Brachyspira pilosicoli 95/1000] Length = 343 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 44/319 (13%), Positives = 102/319 (31%), Gaps = 13/319 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + H+ + K + + + + ++ V I Sbjct: 32 EVEHRKIKIYDFKRPDKF------SKDQIRTLQMMHENFARVTTTSLSAQLRTLVGIHVA 85 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S + I S + S+ + + ++ T+++ L G + E+ + Sbjct: 86 SVDQLTYEEFIRSVSNPSTLAIVSMDPLKGSSILEIDPSITFTIIDRLFGGAGESP-KNL 144 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 NR L+ +E + + I +I L + S + P L + N+ V Sbjct: 145 NRELTDIELSVMEGIIVRILGNLREAWSQVIDLRPRLGSIET--NPQFAQMVSPNDMVVL 202 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNV 240 I + + +V IP T+ + + + + K + V Sbjct: 203 ITLETKVADVEGMMNFCIPYITIEPILSKFSAQYWYASVRRGSTSENLKIIKEKLQNIYV 262 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L D++ L+ G V+ F + I ++ + C G G ++ Sbjct: 263 ETSAELGSMQLPLSDILNLQKGDVVKFTETKITDPVIFKIGTRKKFLCRPGISGSRMAVQ 322 Query: 300 ITDRINFDQKSLKNFLHKR 318 +T ++ + ++ L K Sbjct: 323 LTGVMDGETDITEDDLLKE 341 >gi|209547920|ref|YP_002279837.1| hypothetical protein Rleg2_0312 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533676|gb|ACI53611.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 316 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 167/305 (54%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 + P LLA+LTG LGDK + KI SS G +Y +F P + K + L+V ++Y C+ G + Sbjct: 12 AMDPALLAKLTGGLGDKGRVAKICSSFGEIYSEFFPDVIKSETGLEVTVNYLGCEIGYKN 71 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 H+I N +L +WS N I C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 72 HLIDDLSSNVTLVDVTLRNWSQNITIACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +I+ VL ++ P+L + ++ + +EF INM++T+ Sbjct: 132 MDLAVMVFDKIAKVLRSAVNAPGGFEPSLSVPHALEMRARPPEDRPDEFAAAINMSITLA 191 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + S F L++PQ LLKT + + ++ S + + + + +V ++ +I L+ Sbjct: 192 GIVSEFSLMVPQTALLKTKVTPPKPKRQAGGSSAEWTEQLGDQVRRSHVTLEAKIRLQDL 251 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + + Sbjct: 252 TLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311 Query: 312 KNFLH 316 ++ ++ Sbjct: 312 RHLMN 316 >gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1 BON] gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1 BON] Length = 335 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 40/315 (12%), Positives = 101/315 (32%), Gaps = 16/315 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + K + K + L + ++L + + + Sbjct: 28 MEQTAEEKKIRVYDFRRPNKF------SKEQLRTLEILHENFCRYLSSYLAGFLRIYCQV 81 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + S + + ++S E V + + N+ +++ +LG S Sbjct: 82 NIVSVEELTYYEFMNSLPEPVVLGIMDFQPMDGKIVVEIAPNISYAMIDRVLGGSGRAAE 141 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ + S +E L +R + QI +L + + +P LE + NE Sbjct: 142 EMT--AFSEIELALIERILRQIGTLLQESWANVAAITPKLERIET--NAQFAQIIAPNET 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKT------TLISLSSQNKSENQSEDLIDPFARK 234 + + + + +V + IP T+ + + + + E + ++ Sbjct: 198 AALVTLMLKVGDVEGMVNICIPHVTIEPISDELTTRFWFSNEKKEKAERDEVSFNTLRKR 257 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + ++ D + L G +I + + + G Sbjct: 258 IENVQIPIRAILGESTISIGDFMQLSPGDIIQLDESVDNHIKVMVGDITKFYGKPGLRHN 317 Query: 295 NYTIRITDRINFDQK 309 + ++ITD I ++ Sbjct: 318 HMAVKITDVIYQEED 332 >gi|260767699|ref|ZP_05876634.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972] gi|260617208|gb|EEX42392.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972] gi|315179469|gb|ADT86383.1| flagellar motor switch protein FliM [Vibrio furnissii NCTC 11218] Length = 352 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 32/297 (10%), Positives = 88/297 (29%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + + LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + + E E + + ++ ++ Sbjct: 151 RVIQLLLKIVFGDYKDAWAPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + + VN + + Sbjct: 209 GGGDFHIVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEQDL 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L+D++ L++G +IP A + Y ++GR G+ ++++++I Sbjct: 269 ALRDLMELQVGDIIPIKMP--EHATMFVEELPTYRVKMGRSGEKLAVQVSEKIRRPD 323 >gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 316 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 168/305 (55%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 + P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV ++Y C+ G + Sbjct: 12 AMDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 H+I N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 72 HLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +I+ VL ++ P+L Y D + +EF INM++T+ Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEFAAAINMSITLA 191 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + S F LI+PQ LLKT + + ++ + S + + + + +V ++ +I L+ Sbjct: 192 GIVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHVTLEAKIRLQDL 251 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + + Sbjct: 252 TLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311 Query: 312 KNFLH 316 ++ ++ Sbjct: 312 RHLMN 316 >gi|37525864|ref|NP_929208.1| flagellar motor switch protein FliM [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785293|emb|CAE14234.1| Flagellar motor switch protein FliM [Photorhabdus luminescens subsp. laumondii TTO1] Length = 334 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 36/313 (11%), Positives = 91/313 (29%), Gaps = 10/313 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 S P P R+ + + + + + + DI+ Sbjct: 26 NTSSGENEIRPYDPNTQRRVI------RERLQALEIINERFARHFRMGLFNMLRRSPDIT 79 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + +LV ++NL G + Sbjct: 80 VGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFAPSLVYIAVDNLFGGDGRFPTK 139 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ R + S + + N N+ V Sbjct: 140 VEGREFTHTEQRVINRMLRMALDSYRDAWSAIFKIEVEYIRSE-MQVKFTNITTSPNDIV 198 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240 T + I ++ F + IP + + + + + + ++ + Sbjct: 199 VTTPFQVEIGALSGEFNICIPFAMIEPLRERLTNPPLENARQEDSLWRESLVKQVQHSEL 258 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L ++ L+ G ++P I+ +G + + + G + Y +R+ Sbjct: 259 ELVANFADIPLRLSKILQLQPGDILPIDKP--ERLIVHVDGVPVLTSQYGTLNGQYALRV 316 Query: 301 TDRINFDQKSLKN 313 IN +L Sbjct: 317 EHLINPVLNALDE 329 >gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus DSM 12680] gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus DSM 12680] Length = 330 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 104/312 (33%), Gaps = 13/312 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 +R + K + K + Y + + ++ V I Sbjct: 27 LRQEQTKKKIRLYDFRRPNKF------SKDQLHTLQVIFENYSRSVSTYLSAQLRAAVQI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + + S + SL + + + NL +L+ +LG Sbjct: 81 DVLSVEQLTYDEFMRSLPNPTIMCVFSLQPLEGSAIMEINPNLGFAMLDRILGGPGLPPE 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R L+ +E L +R ++ + L + S E P ++ + +E Sbjct: 141 RI--RPLTEIEITLIERLAQRMLSYLEEPWSGIIELQPVMDRIE--SNPQFTQIVSPSEM 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP---FARKTYQ 237 V I++ I +V S + IP L T + S + E D + Sbjct: 197 VVIISLESKIGDVLSLINICIPFLVLESITGKLNVNYYYSSSVKERSKDSALVLKNRIEN 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + I T+++++ L G VIP R + K + + G VG Sbjct: 257 AMVPVKILIGSTVITVRELLELAPGDVIPLERRLDEDLEVVIGQKPKFRGKPGVVGNRLA 316 Query: 298 IRITDRINFDQK 309 ++IT+ ++ Sbjct: 317 LKITEIVSEVDD 328 >gi|94986472|ref|YP_594405.1| flagellar motor switch protein [Lawsonia intracellularis PHE/MN1-00] gi|94730721|emb|CAJ54083.1| Flagellar motor switch protein [Lawsonia intracellularis PHE/MN1-00] Length = 325 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 93/303 (30%), Gaps = 13/303 (4%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P R+ + + + + + V+++ S Sbjct: 32 DSGIVPFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAIRKRVELNPISID 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + S + + N I + LV L+EN+ G ++ R Sbjct: 86 MTKFGDFMRSLPVPTSINIFKMDPLRGNAIIVVDSRLVFALVENVFGGIGSQP-KIEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E+ + R I + + + LE + ++ V IN Sbjct: 145 FTRIEQVIVDRIIKIALDNMEESWRPVHDVK--LELIRSEINPQFAAIVPPSDVVIVINF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +++ S + IP T+ S Q + + + + V + R Sbjct: 203 EVELDSSIGSMTICIPYATIEPIRSKLHASFQTERLEIDHAWVGRLKERLLETPVELKVR 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + T ++ LKIG V+ + + G Y G V N +I I Sbjct: 263 MGNTQITGNQLLRLKIGDVLVLDTDVEDLLECTVAGVTKYWGIAGTVKSNKAYQI---IK 319 Query: 306 FDQ 308 ++ Sbjct: 320 EEE 322 >gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str. 1873] gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str. 1873] Length = 331 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 100/285 (35%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + ++ +V I + Q + IHS + + Sbjct: 48 SKDHIRTLELIHDNFARIISNYLTAQVRTNVKIKIETVQQITYEEFIHSVPNPTILTIFK 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + S + + +++ LLG + R + ++K + K+ + A L Sbjct: 108 MPPLSGSILFETNPQFAYKVIDVLLGGPGVGQYKT--REFTDIDKNIIKQINKGLIANLK 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + P +E N NE V I ++ + ++ + IP ++ Sbjct: 166 LAWEDVIQVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIE 223 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 K + + E + ++ + + + + K T+ + +TL +G V Sbjct: 224 KVLDKLVVQYWFRENDTDTLEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + + K + G +GKN ++I D I+ D + Sbjct: 284 VTLDNLTSSPVKMMVGDKPYLLGKPGIIGKNRGVQILDIIDKDVE 328 >gi|188534127|ref|YP_001907924.1| flagellar motor switch protein FliM [Erwinia tasmaniensis Et1/99] gi|188029169|emb|CAO97041.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99] Length = 336 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 39/306 (12%), Positives = 94/306 (30%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + P P R+ + + + + + + DI+ Sbjct: 28 NKKEGEDHIRPYDPNTQRRVV------RERLQALEIINERFARAYRMALFNLLRRSPDIT 81 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + S +LV ++NL G + Sbjct: 82 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 141 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ R + ++ + N N+ V Sbjct: 142 VEGREFTHTEQRVIGRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIV 200 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNV 240 T + I N+ F + IP + ++ ++ +Q E D ++ + Sbjct: 201 VTTPFQVEIGNLTGEFNICIPFSMIEPLRETLVNPPLENSLSQDETWRDTLVKQVQHSEL 260 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + ++ LK G V+P I +G + + + G + K + +R+ Sbjct: 261 ELVANFADVSMRISRLLALKPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNKQFALRV 318 Query: 301 TDRINF 306 IN Sbjct: 319 EHLINP 324 >gi|332994114|gb|AEF04169.1| flagellar motor switch protein FliM [Alteromonas sp. SN2] Length = 352 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 11/300 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 +T R+ + + + + M ++S Sbjct: 30 SDASTLEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGI 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 Q KF IH+ + I LV L++N G ++ R Sbjct: 84 QMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ + + I + + + + E E V + Sbjct: 144 EFTPTERRIIQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISS 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ ++ F + +P L + + Q+ E+ + + V + T Sbjct: 202 FHIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVALTT 261 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L+ V+ K G++IP + + +LGR N ++I ++I Sbjct: 262 HMLDVDVSLRQVMEFKPGEIIPVEMP--ETITVLIEDLPTFRAKLGRSRDNLALKIVEKI 319 >gi|304311107|ref|YP_003810705.1| Flagellar motor switch protein [gamma proteobacterium HdN1] gi|301796840|emb|CBL45052.1| Flagellar motor switch protein [gamma proteobacterium HdN1] Length = 354 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 92/308 (29%), Gaps = 12/308 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 G R+ + + ++ + D++ Sbjct: 27 SGDDSADGIKNYDLSTQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVA 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 Q KF +HS + + LV L++N G + Sbjct: 81 VGGVQVIKFGEYVHSLYVPTSLNMVRIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HVK 139 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E ++ + + Q + + E +E V Sbjct: 140 IEGREFTPTENRVVQLVLKQAFKDMEEAWKAVLPVK--FEYLSSEVNPALANIVSPSEVV 197 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240 ++ ++ L +P + + S Q+ NQ E + + NV Sbjct: 198 VVNTFHIELDGGGGDLQLTVPYSMIEPLREVLDSGVQSDVGNQDERWMSSLREEIMGANV 257 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ ++ +K L ++ LK G V+ ++ AN Y +LG + Y ++I Sbjct: 258 HLRCKLLDRKIKLSELAALKTGDVLQVEMP--EHVMIYANEVPTYRGKLGTSREKYAVKI 315 Query: 301 TDRINFDQ 308 +++ + Sbjct: 316 AEKVQRPE 323 >gi|27365287|ref|NP_760815.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6] gi|37680658|ref|NP_935267.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016] gi|320155671|ref|YP_004188050.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O] gi|27361434|gb|AAO10342.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6] gi|37199407|dbj|BAC95238.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016] gi|319930983|gb|ADV85847.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O] Length = 347 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 88/295 (29%), Gaps = 11/295 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + I LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + + S E E + + ++ ++ Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + VN + K Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L+D++ L+ G VIP + A++ Y ++G+ + ++I++ I Sbjct: 269 SLRDLMELRPGDVIPIEMPKH--AVMFVEELPTYRVKMGQSNEKLAVQISEEIER 321 >gi|238782828|ref|ZP_04626857.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC 43970] gi|238716251|gb|EEQ08234.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC 43970] Length = 332 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 99/306 (32%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 +++ + P P R+ + + + + + DI+ Sbjct: 28 NNRTLDEGIKPYDPNTQRRVV------RERLHSLEIINERFARQFRIGLFNLLRRSPDIT 81 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + ++ S NLV ++NL G + Sbjct: 82 AGNIKIQPYHDFARNLPVPTNLNLVHMNPLRGTALFVFSPNLVFMAVDNLFGGDGRFPTK 141 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 R + E+++ R +A + S+ + I N N+ V Sbjct: 142 ADGREFTPTEQRVINRMLAMALEAYDFAWSSIFKLKTEYVRAE-IQVKFTNITSSPNDIV 200 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNV 240 T + I F + IP + + S S + + + A + + + Sbjct: 201 VTTPFYVEIGPHRGEFDICIPFSIIEPLRELLTSPPMESSRQEEKQWRNTLASQVRETEL 260 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T L +++++K G VIP + +G ++S + G + K Y +++ Sbjct: 261 ELVAKFADISTRLSNIMSMKEGDVIPIDKK--ESIEACVDGVPVFSGKYGYMNKQYALKV 318 Query: 301 TDRINF 306 +N Sbjct: 319 EKILNP 324 >gi|241203098|ref|YP_002974194.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856988|gb|ACS54655.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 316 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 169/305 (55%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 + P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV ++Y C+ G + Sbjct: 12 AMDPALLAKLTGGLGDRGGVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 H+I N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 72 HLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +I+ VL ++ P+L + +D + +EF INM++T+ Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHALDARARPPEDRPDEFAAAINMSITLA 191 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + S F LI+PQ LLKT + + ++ +S + + + + +V ++ +I L+ Sbjct: 192 GIVSEFALIVPQTALLKTKVTPPKPKRQATGKSPEWTEQLGDQVRRSHVTLEAKIRLQDL 251 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + + Sbjct: 252 TLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311 Query: 312 KNFLH 316 ++ ++ Sbjct: 312 RHLMN 316 >gi|303240276|ref|ZP_07326795.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus CD2] gi|302592186|gb|EFL61915.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus CD2] Length = 329 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 98/307 (31%), Gaps = 8/307 (2%) Query: 7 HKNTSPLHPILL-ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H T+P + K K + + Y + L + V ++ S Sbjct: 26 HMTTTPEEKKIRNHDFRRPSKFAKDHMKTLNIIHDNYARLLTNFLSGYLRTLVQVAVISV 85 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 ++ + +S V + S S + + + L++ +LG + ++ R Sbjct: 86 EAIAYYEFNNSISNPAVLAIVDFSPLSGSIIFEMAPPIAYALIDRILGGKGSPMEKI--R 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + VE + +R I Q+ ++ + P LE + +NE V I Sbjct: 144 EFTEVELAIIERIIIQVLNLMREPWENVIAIRPRLEKIET--NAQFAQIISANEMVALIT 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242 + I +V + IP + N + ++ + D K V + Sbjct: 202 LGAKIGDVEGMINICIPHMVVEPIVSKLSTKFWFSNSEKEKTNESKDTIELKIENTKVPV 261 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + D + L+ G VIP + + G I++ + Sbjct: 262 RAVLGRSTILVNDFLELQPGDVIPLDSSVSGNLEILVGDLLKFYGTPGVKKNRVAIKVNE 321 Query: 303 RINFDQK 309 + +++ Sbjct: 322 VVRGEEE 328 >gi|259908765|ref|YP_002649121.1| flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96] gi|224964387|emb|CAX55896.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96] gi|283478741|emb|CAY74657.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae DSM 12163] Length = 336 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + + DI+ + + Sbjct: 33 DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L + S +LV ++NL G ++ R Sbjct: 87 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ +R + ++ + N N+ V T Sbjct: 147 FTHTEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I N+ F + IP + ++ S + E+ D ++ + + Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVAN 265 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKL--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323 Query: 306 F 306 Sbjct: 324 P 324 >gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum DSM 12653] gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum DSM 12653] Length = 330 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 99/284 (34%), Gaps = 6/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + L + V+++ S + +S + Sbjct: 48 SKEQLRTLQMIFENFSRSLTSFLSGYLRTIVNVAVVSVDQLTYYEFSNSLNNPVFIAIID 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 S F + +NN +L+ LLG + + +R + +E L + + QI +L Sbjct: 108 ASPLEGLFLLELNNNTTYAILDRLLGGMGK--GEFLDRDYTEIEVNLLTKIVKQILPLLE 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + +P+L + NE V +++ I +P TL Sbjct: 166 EPWSNIIDLTPSLMRVET--NSQFAQIISPNETVALCTLSIKINETEGMMNFCMPHLTLE 223 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + + + K + + + ++ T+ D++ ++G VI Sbjct: 224 PIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTYIPLTVQLGSTTVTVGDLLKFEVGDVI 283 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 R + + K + G K Y+++IT+ I + Sbjct: 284 MLDKRYNEPVEVIIDKKVKFKGIPGIKSKRYSVKITEVIYKGDE 327 >gi|312884904|ref|ZP_07744594.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC BAA-2122] gi|309367381|gb|EFP94943.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC BAA-2122] Length = 348 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 11/302 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + + R+ + + + L + ++S Q Sbjct: 31 EGSVDFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 84 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF ++ + + LV L+EN G ++ R Sbjct: 85 MKFGEYQNTLYVPTSLNMVRFRPLKGTGLVTMEARLVFILVENFFGGEGRYHSRIEGREF 144 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + I + S E E + + + Sbjct: 145 TPTERRIVQLLLKIIFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 202 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + ++ F ++ P + + + Q+ + + +N + Sbjct: 203 VEVDGGGGDFHVVFPYSMVEPIRELLDAGVQSDKMEADVRWSSALKEEIMDVPINFRVNL 262 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+D++ L+ G +IP A++ Y ++GR I+I++ I Sbjct: 263 LEHDIALRDLMELQPGDIIPVEMPPH--AVMFVEELPTYRVKMGRSSDKLAIQISEEIKR 320 Query: 307 DQ 308 Sbjct: 321 PD 322 >gi|73532540|dbj|BAE19828.1| flagellar motor switch protein [Edwardsiella tarda] Length = 337 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 98/304 (32%), Gaps = 10/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ + P P R+ + + + + + + DI+ Sbjct: 31 ENHDGDVRPYDPTTQRRVV------RERLQALEIVNERFARQFRMGLFNLVRRSPDITVG 84 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + + + + + L + +LV ++NL G ++ Sbjct: 85 AVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVD 144 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ +R + + I N N+ V T Sbjct: 145 GREFTHTEQRVIQRMLRLALDAYRDAWGAIFKLDVKYVR-SKIQVKFTNITTSPNDIVVT 203 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNI 242 + + ++ F + IP + + ++ + S+ + + D +++ + + Sbjct: 204 TPFTVEVGALSGEFNICIPFSMIGTLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELEL 263 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L DV+ L+IG V+P + + +G + +C+ G Y +R+ Sbjct: 264 VANFVDVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321 Query: 303 RINF 306 IN Sbjct: 322 MINP 325 >gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae 642] Length = 322 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 98/306 (32%), Gaps = 17/306 (5%) Query: 5 SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 N+ P R+ + + ++ + D Sbjct: 25 QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSAD 78 Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 ++ Q KF +HS + A + LV L++N G Sbjct: 79 VAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-H 137 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ R + E ++ + + Q L + E + E +E Sbjct: 138 AKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSE 195 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQL 238 V ++ ++ + +P + + + Q+ ++Q E ++ + Sbjct: 196 AVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDV 255 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 NV + T I ++ L+D++ ++ G VIP +L ANG + +LG + Sbjct: 256 NVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--SDSLVLRANGVPSFKVKLGSHKGKMAL 313 Query: 299 RITDRI 304 ++ + I Sbjct: 314 QVIEPI 319 >gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC 27750] gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC 27750] Length = 327 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 101/308 (32%), Gaps = 13/308 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + K ++ K + + + + L + V + + Sbjct: 30 TEEKQVKNYDFARPSKF------SKEHLRTLEIIFEHFGRLLATNLPAYLRKSVSVDVVN 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + +S ++ + + S N + ++NL +++ LLG + ++ + Sbjct: 84 SEVVIYSEFSNALSNPVLLGVVGMQPLSGNIIMEMASNLGFAIVDRLLGGAGNSLDK--E 141 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R S +E + +R ++ + + +P LE + +E + + Sbjct: 142 RDFSEIELSILERIFTVCVNLMQEPWENVVKVNPRLERIET--NSQFAQIISPSETIAIV 199 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVN 241 +N+ I +V + +P TL N E + D + + Sbjct: 200 TINLKIGDVEGLVNICLPFATLEPVMDKLNTKYWFSNMQEKDTNTYEDAIETVIDKAMIP 259 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + K ++ D L+IG +I + + + + G Y +R+T Sbjct: 260 VKAVLGTSKISVSDFANLQIGDIIRIDKKVDQELEVFVGNIKKFKALPGYYEDKYAVRVT 319 Query: 302 DRINFDQK 309 + I + + Sbjct: 320 EVIRKESE 327 >gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] Length = 325 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 95/292 (32%), Gaps = 10/292 (3%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 R+ + + + + M VD++ S KF Sbjct: 37 AFDLANQDRIIRG------RMPVLEIINDRFSRLCTSALANTMRKRVDVNPISIDMSKFG 90 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + S + + N + LV +L+EN G + ++ R + +E Sbjct: 91 DFMRSLPVPTSINIFKIDPLRGNALLVVDTRLVFSLVENFFGGAGSQP-KIEGRDFTPIE 149 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 + + + + I A L E ++E + T ++ V I+ + +E Sbjct: 150 QSIIVKVVKIILANLEDAWRPVHEV--SIELLRSEINPQFATIVPPSDVVVVISFEVELE 207 Query: 192 NVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 N S VL +P T+ + Q + I F + + V+++ + Sbjct: 208 NALGSMVLALPYATIEPIRSKLYAAFQTERLEIDHAWISRFRDRLMETPVDMNVTFGTTQ 267 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 T + ++ +K+G ++ E +G + G V N +I Sbjct: 268 ITGRQLLDMKVGDILMLDQDEDDMLSGRIHGILKFFGLPGFVKGNKAFKIIK 319 >gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 328 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 96/285 (33%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + Y + L ++ + + + S + + I S + + S Sbjct: 48 SKDQIHTLQVIYENYARTLGTYLSGQLRVPLQVELLSVEQLTYEEFIRSIPNPTILNIFS 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L + + + NL L+ LLG + R+L+ +E+ + +R ++ L Sbjct: 108 LYPLHGSAIMEINPNLGFAFLDRLLGGPGYAPSK--ARALTEIEQTVIERLSQRMLDYLE 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P+LE + E + +++ + +V + IP L Sbjct: 166 EPWGSIIQIEPSLERVET--NPQFTQLVQPTEIMIIVSLETRMGDVMGMINICIPFLVLE 223 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 ++ +S I K + I + T++D++ L +G V Sbjct: 224 PILDKLNVHYYYSTAAQERSPANIAAIRTKLENTTIPIKVVMGKTVITVRDLLALSVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 IP + + + + G I++T + + + Sbjct: 284 IPLNRNISQELDIVIGNRAKFLGKPGVFANRMAIQVTGIVEEESE 328 >gi|262166227|ref|ZP_06033964.1| flagellar motor switch protein FliM [Vibrio mimicus VM223] gi|262025943|gb|EEY44611.1| flagellar motor switch protein FliM [Vibrio mimicus VM223] Length = 300 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 5/278 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 + + + L + ++S Q KF ++ + Sbjct: 1 MPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPL 60 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + LV L+EN G ++ R + E+++ + + + A + S Sbjct: 61 KGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWS 120 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 E E + + ++ ++ F +++P + Sbjct: 121 PVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRE 178 Query: 212 ISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + Q+ + + VN + L+D++ L++G VIP Sbjct: 179 LLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMP 238 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 239 --EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 274 >gi|261209862|ref|ZP_05924163.1| flagellar motor switch protein FliM [Vibrio sp. RC341] gi|260841048|gb|EEX67573.1| flagellar motor switch protein FliM [Vibrio sp. RC341] Length = 349 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + L + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + + LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + A + S E E + + ++ ++ Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + + VN + Sbjct: 209 GGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L+D++ L++G VIP A++ Y ++GR G+ ++++++I Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893] gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893] Length = 332 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 12/301 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ R+ + + ++ + + D+S Sbjct: 27 ETDEAGIKSYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRNADVSTG 80 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 Q KF IH+ + + LV L++N G ++ Sbjct: 81 GVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGR-HAKIE 139 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E ++ + + Q+ + + + E +E V Sbjct: 140 GREFTPTETRIVQMVLDQVFHDMREAWHAVLKVD--FEYLSSEVNPAMANIVSPSEVVVV 197 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 ++ ++ + +P + + + Q+ ++ E + +NV I Sbjct: 198 STFHIELDGGGGELHMALPYSMIEPIRDVLDAGVQSDIDDVDERWVSALQEDIKDVNVPI 257 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +T + ++ +L+D+ LK G +IP L+ANG +Y +G +RI D Sbjct: 258 NTTVCRRRISLRDIAKLKEGDIIPVEIP--ELLTLTANGIPVYKATMGTRDGKLALRIHD 315 Query: 303 R 303 R Sbjct: 316 R 316 >gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM 2522] gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM 2522] Length = 332 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 42/316 (13%), Positives = 108/316 (34%), Gaps = 13/316 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ + K R K + + + Y + L ++ V + Sbjct: 27 LKKEETQKKIKVYDFKRALRF------SKDQIRSLTRIHENYARLLTTQLSAQLRTYVQV 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + S + I S + + + F I + N+ +L+ +LG E + Sbjct: 81 AVASVDQLPYDEFIRSVPKMTILNVFEPFPLDGRFVIEVNPNIAYAMLDRMLGGQGEALN 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ + L+ +E K+ + + L + + + P +++ + NE Sbjct: 141 KVES--LTEIETKILSQLFQRSLETLREAWESVVDLDPVMDEIEV--NPQFLQLVSPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V I+++ TI + + +P + Q K +++ + + Q Sbjct: 197 VVVISLSTTIGEASGMMNICLPHVVIESILPKLSIHLWMQQKKKDRQPGELSALEKNLKQ 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 +++ + + ++ + + L VI ++ + Y + G+V Sbjct: 257 APLDVIVELGQSQISIAEFLQLGENDVIELNQTIDDPLLVKLGNEPKYYSQPGKVKGKLA 316 Query: 298 IRITDRINFDQKSLKN 313 ++ITD I + +S Sbjct: 317 VQITDSIVKEGESDDE 332 >gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT] gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT] Length = 331 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 97/285 (34%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + ++ +V I+ + Q + IHS + + Sbjct: 48 SKDHIRTLELIHDNFARTISNYLTAQVRTNVKINIETVQQITYEEFIHSVPNPTILTIFK 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + S + + +++ LLG S + R + ++K + K+ + A L Sbjct: 108 MPPLSGSILFETNPQFAYQIIDVLLGGSGT--GKYKTREFTDIDKNIIKQINKGLIANLK 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 E P +E N NE V I ++ + + + IP ++ Sbjct: 166 LAWEDVMEVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNNTFINICIPYLSIE 223 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 K + + E + ++ + + + + T+ +TL +G V Sbjct: 224 KVLDKLVVQYWFRENNTETLEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + + + G +GKN ++I D I+ D + Sbjct: 284 ITLDSLTSSPVKVVVGNEPYLLGRPGTIGKNRGVQILDIIDKDVE 328 >gi|51596032|ref|YP_070223.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP 32953] gi|153949279|ref|YP_001401268.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP 31758] gi|51589314|emb|CAH20935.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP 32953] gi|152960774|gb|ABS48235.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP 31758] Length = 333 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 88/303 (29%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + + P P R+ + + + + + DI+ Sbjct: 29 ANETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + +LV ++NL G ++ Sbjct: 83 IKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + I N N+ V + Sbjct: 143 REFTHTEQRVITRMLRLALDAYRDAWAAIYKIDVEYVRSE-IQVKFTNITTSPNDIVVST 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 + I ++ F + IP + + + + S + + ++ + + Sbjct: 202 PFQVEIGTLSGEFNICIPFAMIEPLRELLTNPPLENSRQEDNYWRETLVKQVQHSELELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 262 ANFVDIPLRLSQILKLQPGDVLPIEKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHL 319 Query: 304 INF 306 IN Sbjct: 320 INP 322 >gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium HP15] Length = 332 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 97/301 (32%), Gaps = 12/301 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ R+ + + ++ M + D+S Sbjct: 27 ETDDTGIKSYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLMRRNADVSTG 80 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 Q KF IH+ + + LV L++N G ++ Sbjct: 81 GVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGR-HAKIE 139 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E ++ + + Q+ + + + E +E V Sbjct: 140 GREFTPTETRIVQMVLDQVFHDMKEAWHAVLKVD--FEYLSSEVNPAMANIVSPSEVVVV 197 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 ++ ++ +P + + + Q+ ++ E ++ +++V I Sbjct: 198 STFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDERWVNALQEDIKEVSVPI 257 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +T + ++ +L+D+ +K G +IP ++ANG IY LG +RI + Sbjct: 258 NTTVCRRRISLRDIAKMKAGDIIPVEIP--EHLTVTANGIPIYKATLGTRDGKLALRIHE 315 Query: 303 R 303 R Sbjct: 316 R 316 >gi|22126366|ref|NP_669789.1| flagellar motor switch protein FliM [Yersinia pestis KIM 10] gi|45441387|ref|NP_992926.1| flagellar motor switch protein FliM [Yersinia pestis biovar Microtus str. 91001] gi|108807195|ref|YP_651111.1| flagellar motor switch protein FliM [Yersinia pestis Antiqua] gi|108812461|ref|YP_648228.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516] gi|145598589|ref|YP_001162665.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides F] gi|149366229|ref|ZP_01888264.1| flagellar motor switch protein FliM [Yersinia pestis CA88-4125] gi|165925921|ref|ZP_02221753.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. F1991016] gi|165938773|ref|ZP_02227328.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. IP275] gi|166010886|ref|ZP_02231784.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. E1979001] gi|166210779|ref|ZP_02236814.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. B42003004] gi|167401189|ref|ZP_02306692.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420157|ref|ZP_02311910.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425859|ref|ZP_02317612.1| flagellar motor switch protein FliM [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467512|ref|ZP_02332216.1| flagellar motor switch protein FliM [Yersinia pestis FV-1] gi|170024624|ref|YP_001721129.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis YPIII] gi|186895137|ref|YP_001872249.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis PB1/+] gi|218928944|ref|YP_002346819.1| flagellar motor switch protein FliM [Yersinia pestis CO92] gi|229896268|ref|ZP_04511438.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides A] gi|229897205|ref|ZP_04512361.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897932|ref|ZP_04513083.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. India 195] gi|229902837|ref|ZP_04517954.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516] gi|270486623|ref|ZP_06203697.1| flagellar motor switch protein FliM [Yersinia pestis KIM D27] gi|294504010|ref|YP_003568072.1| flagellar motor switch protein [Yersinia pestis Z176003] gi|21959351|gb|AAM86040.1|AE013852_2 flagellar motor switch protein [Yersinia pestis KIM 10] gi|45436247|gb|AAS61803.1| flagellar motor switch protein FliM [Yersinia pestis biovar Microtus str. 91001] gi|108776109|gb|ABG18628.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516] gi|108779108|gb|ABG13166.1| flagellar motor switch protein FliM [Yersinia pestis Antiqua] gi|115347555|emb|CAL20464.1| flagellar motor switch protein FliM [Yersinia pestis CO92] gi|145210285|gb|ABP39692.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides F] gi|149292642|gb|EDM42716.1| flagellar motor switch protein FliM [Yersinia pestis CA88-4125] gi|165913387|gb|EDR32009.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. IP275] gi|165922125|gb|EDR39302.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. F1991016] gi|165990230|gb|EDR42531.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. E1979001] gi|166207959|gb|EDR52439.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. B42003004] gi|166961852|gb|EDR57873.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049578|gb|EDR60986.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055258|gb|EDR65055.1| flagellar motor switch protein FliM [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751158|gb|ACA68676.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis YPIII] gi|186698163|gb|ACC88792.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis PB1/+] gi|229680284|gb|EEO76383.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516] gi|229688973|gb|EEO81038.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. India 195] gi|229693542|gb|EEO83591.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701191|gb|EEO89220.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides A] gi|262361804|gb|ACY58525.1| flagellar motor switch protein [Yersinia pestis D106004] gi|262366060|gb|ACY62617.1| flagellar motor switch protein [Yersinia pestis D182038] gi|270335127|gb|EFA45904.1| flagellar motor switch protein FliM [Yersinia pestis KIM D27] gi|294354469|gb|ADE64810.1| flagellar motor switch protein [Yersinia pestis Z176003] gi|320015439|gb|ADV99010.1| flagellar motor switch protein FliM [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 333 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 88/303 (29%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + + P P R+ + + + + + DI+ Sbjct: 29 ANETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + +LV ++NL G ++ Sbjct: 83 IKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + I N N+ V + Sbjct: 143 REFTHTEQRVITRMLRLALDAYRDAWAAIYKIDVEYVRSE-IQVKFTNITTSPNDIVVST 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 + I ++ F + IP + + + + S + + ++ + + Sbjct: 202 PFQVEIGTLSGEFNICIPFAMIEPLRELLTNPPLENSRQEDNYWRETLVKQVQHSELELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 262 ANFVDIPLRLSQILKLQPGDVLPIEKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHL 319 Query: 304 INF 306 IN Sbjct: 320 INP 322 >gi|28899016|ref|NP_798621.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD 2210633] gi|153837001|ref|ZP_01989668.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] gi|260365238|ref|ZP_05777795.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030] gi|260878788|ref|ZP_05891143.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AN-5034] gi|260897383|ref|ZP_05905879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus Peru-466] gi|260899942|ref|ZP_05908337.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ4037] gi|4322004|gb|AAD15907.1| polar flagellar switch protein FliM [Vibrio parahaemolyticus] gi|28807235|dbj|BAC60505.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD 2210633] gi|149749774|gb|EDM60519.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] gi|308088268|gb|EFO37963.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus Peru-466] gi|308094184|gb|EFO43879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AN-5034] gi|308107409|gb|EFO44949.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ4037] gi|308115479|gb|EFO53019.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030] gi|328474447|gb|EGF45252.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 10329] Length = 348 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 34/295 (11%), Positives = 84/295 (28%), Gaps = 11/295 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ + I LV L+EN G ++ R + E+ Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + + + + S E E + + ++ ++ Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +++P + + + Q+ + VN + K Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L+D++ L+ G +IP A + Y ++GR ++++ I Sbjct: 269 SLRDLMELQPGDIIPIEMP--EHATMFIEDLPTYRVKMGRSEDKLAVQVSQEIER 321 >gi|70729040|ref|YP_258774.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5] gi|68343339|gb|AAY90945.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5] Length = 322 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 92/299 (30%), Gaps = 12/299 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + ++ + D++ Q Sbjct: 34 SVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVM 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +HS + + LV L++N G ++ R + Sbjct: 88 KFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ + + Q L + + E +E + ++ Sbjct: 147 PTELRVVRMVLEQAFVDLKEAWQAIMPVN--FEYINSEVNPAMANIVGPSEAIVVSTFHI 204 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ + +P + + + Q+ ++Q E + V + + Sbjct: 205 ELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWSKALREDVLDVAVPLSATVA 264 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ L+D++ ++ G VIP E I+ ANG + +LG N +++ + I Sbjct: 265 RRQLRLRDILHMQPGDVIPVELPED--MIMRANGVPSFKVKLGSHKGNLALQVIEPIER 321 >gi|253990101|ref|YP_003041457.1| flagellar motor switch protein FliM [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781551|emb|CAQ84714.1| flagellar motor switch protein flim [Photorhabdus asymbiotica] Length = 334 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 35/313 (11%), Positives = 91/313 (29%), Gaps = 10/313 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 S P P R+ + + + + + + DI+ Sbjct: 26 NTASRENEVRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNMLRRSPDIT 79 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + +LV ++NL G + Sbjct: 80 VGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFAPSLVYIAVDNLFGGDGRFPTK 139 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ R + + + + N N+ V Sbjct: 140 VEGREFTNTEQRVINRMLRMALDSYRDAWDSIFKIEVEYVRSE-MQVKFTNITTSPNDIV 198 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNV 240 T + I ++ F + IP + + ++ + + ++ + Sbjct: 199 VTTPFQVEIGALSGEFNICIPFAMIEPLRERLTNPPLENVRQEDSLWRESLVKQVQHSEL 258 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L ++ L+ G ++P I+ +G + + + G + Y +R+ Sbjct: 259 ELVANFVDIPLRLSKILQLQPGDILPIDKP--ERLIVHVDGVPVLTSQYGTLNGQYALRV 316 Query: 301 TDRINFDQKSLKN 313 IN +L Sbjct: 317 EHLINPVLNALDE 329 >gi|209963533|ref|YP_002296448.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] gi|7025355|gb|AAF35846.1|AF220002_3 lateral flagellar motor switch protein FliM [Rhodospirillum centenum] gi|209956999|gb|ACI97635.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] Length = 352 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 105/313 (33%), Gaps = 3/313 (0%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + + S ++ ++ + + + L F+ V+++ Sbjct: 42 VDDSKSVRTRSVIDQIVNSSFVNYDRLPMLDVVFDRLVRLLNTSFRNLTSGTVEVTVQQI 101 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 S +F + + + W ++ + + L+ ++++ LLG + R Sbjct: 102 ASVRFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSELIYSIVDILLGGRRSDPAPIDGR 161 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + +E+ LA+R I + L S E + SN + Sbjct: 162 PYTVIERALAERLIRTVLKDLGTAFSPLSAVGFACERVET--TPQFAVITRSNNACISAR 219 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + ++ L+IP TL + L + + + + +V++ Sbjct: 220 FQVALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFGRDSMWETHLKNELRRTSVDLSA 279 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + +L D++ K G + R A+L+ ++ E+G+ N IRI + Sbjct: 280 VLGQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHVPMFVGEMGQRNGNVAIRIDADL 339 Query: 305 NFDQKSLKNFLHK 317 + + L + Sbjct: 340 GAQDEVIHGLLQR 352 >gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato Max13] gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato K40] gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 322 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + R+ + + ++ + D++ Sbjct: 30 SEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGG 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF +HS + A + LV L++N G ++ Sbjct: 84 VQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E ++ + + Q L + E + E +E V Sbjct: 143 REFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVIS 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ ++ + +P + + + Q+ ++Q E ++ +NV + Sbjct: 201 TFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLT 260 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 T I ++ L+D++ ++ G VIP +L ANG + +LG +++ + Sbjct: 261 TTIAQRQLPLRDILHMRPGDVIPVEL--SDTLVLRANGVPSFKVKLGSHKGKMALQVIEP 318 Query: 304 I 304 I Sbjct: 319 I 319 >gi|224534350|ref|ZP_03674928.1| flagellar motor switch protein FliM [Borrelia spielmanii A14S] gi|224514452|gb|EEF84768.1| flagellar motor switch protein FliM [Borrelia spielmanii A14S] Length = 352 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + SS + ++ + V + S + I S + + Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + +++ L G +TI + +R L+ +E+ + + I +I A + Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P + E + + + + I V +P T+ Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + +D K + + I K ++++++L G V Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLNKGDV 294 Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314 + L KE + C +G +G +++IT++I + LK Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGFDLLKEL 347 >gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae FF5] gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aceris str. M302273PT] Length = 322 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 98/306 (32%), Gaps = 17/306 (5%) Query: 5 SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 N+ P R+ + + ++ + D Sbjct: 25 QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSAD 78 Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 ++ Q KF +HS + A + LV L++N G Sbjct: 79 VAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-H 137 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ R + E ++ + + Q L + E + E +E Sbjct: 138 AKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSE 195 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQL 238 V ++ ++ + +P + + + Q+ ++Q E ++ + Sbjct: 196 AVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDV 255 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 NV + T I ++ L+D++ ++ G VIP ++ ANG + +LG + Sbjct: 256 NVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--SDSLVMRANGVPSFKVKLGSHKGKMAL 313 Query: 299 RITDRI 304 ++ + I Sbjct: 314 QVIEPI 319 >gi|222084857|ref|YP_002543386.1| flagellar C-ring protein [Agrobacterium radiobacter K84] gi|221722305|gb|ACM25461.1| flagellar C-ring protein [Agrobacterium radiobacter K84] Length = 314 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 2/316 (0%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M QS H + + P+L A+LTG LGD T+ K+ ++ G +Y +FLP I K + LDV + Sbjct: 1 MSQQSTHPKQT-MDPVLFAKLTGGLGDPATLAKLGTAFGQVYAEFLPDIIKSETGLDVSV 59 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 Y C+SG S ++ N SL +WS NF +GC V+TL+E+LLGA ETI Sbjct: 60 GYAGCRSGLMSELVAGIGSNCALVNGSLRNWSQNFLLGCGTGFVMTLMEHLLGAQPETID 119 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R LS +E L+ +I+ VL ++ T P L+ Y+I+ +++F Sbjct: 120 SPAARPLSVIELDLSVMVFDKIANVLRSAVNATGGFEPYLDPPYNIEDRPTPVAGQTDDF 179 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 I M +++ S V+I+PQ LL+T + + ++N S + + + + V Sbjct: 180 AAAIAMTISLGKTVSEIVVIVPQYELLRTVVSAPRAKNPSAST-GAWAEQLNEQVRRSQV 238 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ RI L+ TL + L +G VIPF+ +SAN K++Y CE GR G+NYT+R+ Sbjct: 239 TLEARIRLQSLTLDTISRLAVGDVIPFMDTSDVQVEVSANSKDLYVCEFGRSGENYTVRV 298 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + L++ ++ Sbjct: 299 KDTVNSDDELLRHLMN 314 >gi|238796938|ref|ZP_04640442.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC 43969] gi|238719198|gb|EEQ11010.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC 43969] Length = 332 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 94/306 (30%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 ++ P P R+ + + + + + DI+ Sbjct: 28 NNPALDVGIKPYDPNTQRRVV------RERLHSLEIINERFARQFRMGLFNLLRRSPDIT 81 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + ++ S NLV ++NL G + Sbjct: 82 AGNIKIQPYHEFARNLPVPTNLNLVHMNPLRGTALFVFSPNLVFMAVDNLFGGDGRFPTK 141 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 R + E+++ KR + + S+ + I N N+ V Sbjct: 142 ADGREFTPTEQRVIKRMLTMALEAYDFAWSSIFKLHTEYVRAE-IQVKFTNITSSPNDIV 200 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNV 240 T + I F + IP + + S S + + + A + + + Sbjct: 201 VTTPFYVEIGPHRGEFDICIPFSIIEPLRELLTSPPMENSRQEEKQWRNTLASQVRETEL 260 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + T L V+ +K G VIP + +G ++S + G V K Y +++ Sbjct: 261 ELVASFADIPTRLSQVMKMKEGDVIPIDK--QESIEACVDGVPVFSGKYGCVNKQYALKV 318 Query: 301 TDRINF 306 +N Sbjct: 319 EKMMNP 324 >gi|203284199|ref|YP_002221939.1| flagellar motor switch protein [Borrelia duttonii Ly] gi|203287738|ref|YP_002222753.1| flagellar motor switch protein [Borrelia recurrentis A1] gi|201083642|gb|ACH93233.1| flagellar motor switch protein [Borrelia duttonii Ly] gi|201084958|gb|ACH94532.1| flagellar motor switch protein [Borrelia recurrentis A1] Length = 352 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 100/293 (34%), Gaps = 9/293 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + SS + ++ + V + S + I S + + Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + +++ L G +TI + +R L+ +E+ + + I +I A + Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P + E V + + + I V +P T+ Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMVILVTLEVKIGKVEGLMNFCLPYITIE 234 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + +D K N+ + I K ++++++L+ G V Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDVLREKLEYTNMPLVAEIGEVKLKVREILSLEKGDV 294 Query: 265 IPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS--LKNF 314 I + IL KE + C +G VG +++IT ++ + LK Sbjct: 295 INLENSSIDQDLILKVGTKEKFKCRMGLVGNKISVQITRKVGEVEDFDLLKEL 347 >gi|92114085|ref|YP_574013.1| flagellar motor switch protein FliM [Chromohalobacter salexigens DSM 3043] gi|91797175|gb|ABE59314.1| flagellar motor switch protein FliM [Chromohalobacter salexigens DSM 3043] Length = 338 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 99/304 (32%), Gaps = 12/304 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S P P R+ + + + + M DI+ S Sbjct: 32 SREGKVRPFDPAKQHRII------RERLHALDIINERFARQFRVALFNLMRRSADITVES 85 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + +S + + ++ + + +LV +++NL G + + Sbjct: 86 VRYQSYSEFSRNLPVPTNLNLITMKPLRGSALVVFPPSLVFMVVDNLFGGDGRFLTKSEG 145 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-LSNEFVTT 183 R + E+++ R + ++ + +E +K NE V Sbjct: 146 REFTRTEQRIIHRMLKMALEGYSESWKSVYPLD--IEYTRSELQVKFANITNSPNEIVVN 203 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNI 242 ++ + N++S F + IP + I S + + ++ + A + +V + Sbjct: 204 STFHVEVGNLSSEFNICIPYSMIEPIRDILASPLHDTHPDEEQQWEARMAHEIRHSSVEL 263 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L+DV L +G +IP +S +G + +C+ G +R+ Sbjct: 264 TADFVDIPLRLRDVTQLSVGDIIPIELP--EAVNVSVDGIPVMTCDYGSQKSQRALRVRH 321 Query: 303 RINF 306 I Sbjct: 322 LIEH 325 >gi|224531918|ref|ZP_03672550.1| flagellar motor switch protein FliM [Borrelia valaisiana VS116] gi|224511383|gb|EEF81789.1| flagellar motor switch protein FliM [Borrelia valaisiana VS116] Length = 352 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + SS + ++ + V + S + I S + + Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + +++ L G +TI + +R L+ +E+ + + I +I A + Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P + E + + + + I V +P T+ Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + +D K + + I K ++++++L G V Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDV 294 Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314 + L KE + C +G +G +++IT++I + LK Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKISVQITEKIGDIKGFDLLKEL 347 >gi|187918152|ref|YP_001883715.1| flagellar motor switch protein FliM [Borrelia hermsii DAH] gi|119861000|gb|AAX16795.1| flagellar motor switch protein FliM [Borrelia hermsii DAH] Length = 352 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 100/293 (34%), Gaps = 9/293 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + SS + ++ + V + S + I S + + Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + +++ L G +TI + +R L+ +E+ + + I +I + + Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILSNMR 176 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P + E V + + + I V +P T+ Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMVILVTLEVKIGKVEGLMNFCLPYITIE 234 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + +D K ++ + I K ++++++L+ G V Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDVLREKLENTDMLLVAEIGEVKLKVREILSLEKGDV 294 Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS--LKNF 314 I IL K+ + C +G VG +++IT+++ + LK Sbjct: 295 INLEDSPIDKDLILKVGTKQKFKCRMGLVGSKISVQITEKVGEVEDFDLLKEL 347 >gi|15594623|ref|NP_212412.1| flagellar motor switch protein FliM [Borrelia burgdorferi B31] gi|111115103|ref|YP_709721.1| flagellar motor switch protein FliM [Borrelia afzelii PKo] gi|195941368|ref|ZP_03086750.1| flagellar motor switch protein FliM [Borrelia burgdorferi 80a] gi|216263834|ref|ZP_03435828.1| flagellar motor switch protein FliM [Borrelia afzelii ACA-1] gi|216264557|ref|ZP_03436549.1| flagellar motor switch protein FliM [Borrelia burgdorferi 156a] gi|218249869|ref|YP_002374801.1| flagellar motor switch protein FliM [Borrelia burgdorferi ZS7] gi|221217666|ref|ZP_03589134.1| flagellar motor switch protein FliM [Borrelia burgdorferi 72a] gi|223888930|ref|ZP_03623521.1| flagellar motor switch protein FliM [Borrelia burgdorferi 64b] gi|224533145|ref|ZP_03673745.1| flagellar motor switch protein FliM [Borrelia burgdorferi WI91-23] gi|224533778|ref|ZP_03674366.1| flagellar motor switch protein FliM [Borrelia burgdorferi CA-11.2a] gi|225549106|ref|ZP_03770081.1| flagellar motor switch protein FliM [Borrelia burgdorferi 94a] gi|225550153|ref|ZP_03771113.1| flagellar motor switch protein FliM [Borrelia burgdorferi 118a] gi|225552170|ref|ZP_03773110.1| flagellar motor switch protein FliM [Borrelia sp. SV1] gi|226320579|ref|ZP_03796139.1| flagellar motor switch protein FliM [Borrelia burgdorferi 29805] gi|226321596|ref|ZP_03797122.1| flagellar motor switch protein FliM [Borrelia burgdorferi Bol26] gi|3913687|sp|Q57511|FLIM_BORBU RecName: Full=Flagellar motor switch protein FliM gi|1165263|gb|AAA85602.1| FliM [Borrelia burgdorferi] gi|1185056|gb|AAB58965.1| switch protein [Borrelia burgdorferi] gi|2688188|gb|AAC66670.1| flagellar motor switch protein (fliM) [Borrelia burgdorferi B31] gi|110890377|gb|ABH01545.1| flagellar motor switch protein [Borrelia afzelii PKo] gi|215979878|gb|EEC20700.1| flagellar motor switch protein FliM [Borrelia afzelii ACA-1] gi|215981030|gb|EEC21837.1| flagellar motor switch protein FliM [Borrelia burgdorferi 156a] gi|218165057|gb|ACK75118.1| flagellar motor switch protein FliM [Borrelia burgdorferi ZS7] gi|221192343|gb|EEE18562.1| flagellar motor switch protein FliM [Borrelia burgdorferi 72a] gi|223885746|gb|EEF56845.1| flagellar motor switch protein FliM [Borrelia burgdorferi 64b] gi|224511872|gb|EEF82273.1| flagellar motor switch protein FliM [Borrelia burgdorferi WI91-23] gi|224513071|gb|EEF83434.1| flagellar motor switch protein FliM [Borrelia burgdorferi CA-11.2a] gi|225369265|gb|EEG98718.1| flagellar motor switch protein FliM [Borrelia burgdorferi 118a] gi|225370332|gb|EEG99770.1| flagellar motor switch protein FliM [Borrelia burgdorferi 94a] gi|225371168|gb|EEH00598.1| flagellar motor switch protein FliM [Borrelia sp. SV1] gi|226232785|gb|EEH31538.1| flagellar motor switch protein FliM [Borrelia burgdorferi Bol26] gi|226233998|gb|EEH32719.1| flagellar motor switch protein FliM [Borrelia burgdorferi 29805] gi|312147869|gb|ADQ30528.1| flagellar motor switch protein FliM [Borrelia burgdorferi JD1] gi|312149126|gb|ADQ29197.1| flagellar motor switch protein FliM [Borrelia burgdorferi N40] Length = 352 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + SS + ++ + V + S + I S + + Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + +++ L G +TI + +R L+ +E+ + + I +I A + Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P + E + + + + I V +P T+ Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + +D K + + I K ++++++L G V Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDV 294 Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314 + L KE + C +G +G +++IT++I + LK Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGFDLLKEL 347 >gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum BKT015925] gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum BKT015925] Length = 331 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 100/285 (35%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + ++ +V I + Q + IHS + + Sbjct: 48 SKDHIRTLELIHDNFARIISNYLTAQVRTNVKIKIETVQQITYEEFIHSVPNPTILTIFK 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + S + + +++ LLG + R + ++K + K+ + A L Sbjct: 108 MPPLSGSILFETNPQFAYQIIDVLLGGPGVGQYKT--REFTDIDKNIIKQINKGLIANLK 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + P +E N NE V I ++ + ++ + IP ++ Sbjct: 166 LAWEDVIQVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIE 223 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 K + + E+ + R+ + + + + K T+ + +TL +G V Sbjct: 224 KVLDKLVVQYWFRENDTDTLEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + + + G +GKN ++I D I+ D + Sbjct: 284 VTLDALTSSPVKMMVGNQPYLLAKPGTMGKNRGVQILDIIDKDVE 328 >gi|83647849|ref|YP_436284.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396] gi|83635892|gb|ABC31859.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396] Length = 340 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 97/299 (32%), Gaps = 12/299 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 R+ + + ++ + + D++ Q Sbjct: 32 GVRSYDLTSQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRNADVASGGVQIL 85 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF IH+ + + LV L++N G ++ R + Sbjct: 86 KFGEYIHTLYVPTSLNLVKIRPLRGTGLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 144 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ + + Q+ + + + + E +E V ++ Sbjct: 145 PTEIRIVQMVLEQVFHDMKEAWNAVMKVD--FEYVNSEVNPAMANIVSPSEVVVVSTFHI 202 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ + +P + + + Q+ ++ E I + + V ++ + Sbjct: 203 ELDGGGGDMHVAMPYSMIEPIREVLDAGVQSDVDDVDERWISALQQDILEARVPLNAAVV 262 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +K +L+ + LK G VIP ++ANG I+ ++G+ N ++I D+I Sbjct: 263 RQKISLRSLSRLKPGDVIPVELP--ETITVTANGVPIFIAKVGQCNGNLALKIVDKIKR 319 >gi|51598538|ref|YP_072726.1| flagellar motor switch protein FliM [Borrelia garinii PBi] gi|219684519|ref|ZP_03539462.1| flagellar motor switch protein FliM [Borrelia garinii PBr] gi|219685746|ref|ZP_03540557.1| flagellar motor switch protein FliM [Borrelia garinii Far04] gi|51573109|gb|AAU07134.1| flagellar motor switch protein [Borrelia garinii PBi] gi|219671881|gb|EED28935.1| flagellar motor switch protein FliM [Borrelia garinii PBr] gi|219672685|gb|EED29713.1| flagellar motor switch protein FliM [Borrelia garinii Far04] Length = 352 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + SS + ++ + V + S + I S + + Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + +++ L G +TI + +R L+ +E+ + + I +I A + Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P + E + + + + I V +P T+ Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + +D K + + I K ++++++L G V Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLIAEIGEVKLKVREILSLDKGDV 294 Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314 + L KE + C +G +G +++IT++I + LK Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGFDLLKEL 347 >gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7] Length = 322 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 98/306 (32%), Gaps = 17/306 (5%) Query: 5 SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 N+ P R+ + + ++ + D Sbjct: 25 QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFPRYTRISMFNLLRRSAD 78 Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 ++ Q KF +HS + A + LV L++N G Sbjct: 79 VAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-H 137 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ R + E ++ + + Q L + E + E +E Sbjct: 138 AKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSE 195 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQL 238 V ++ ++ + +P + + + Q+ ++Q E ++ + Sbjct: 196 AVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDV 255 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 NV + T I ++ L+D++ ++ G VIP +L ANG + +LG + Sbjct: 256 NVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--GDSLVLRANGVPSFKVKLGSHKGKMAL 313 Query: 299 RITDRI 304 ++ + I Sbjct: 314 QVIEPI 319 >gi|268589967|ref|ZP_06124188.1| flagellar motor switch protein FliM [Providencia rettgeri DSM 1131] gi|291314684|gb|EFE55137.1| flagellar motor switch protein FliM [Providencia rettgeri DSM 1131] Length = 335 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 37/307 (12%), Positives = 84/307 (27%), Gaps = 10/307 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 N P P R+ + + + + + DI+ + Sbjct: 33 DNVRPYDPNTQRRVIRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIKI 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + + LV ++NL G + + Sbjct: 87 EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRQEGKEF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ R + + I N N+ V T Sbjct: 147 TNTEQRIINRMLKLALGAYRDAWKPIADIEVEYVRSE-IQVKFTNITTSPNDIVVTTPFL 205 Query: 188 MTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + I N F + IP + + ++E + + + + + Sbjct: 206 VEIGNTVGEFSICIPIAMIEPLRERLINPPMEQGHQENETWVTNLVTQVKRSELELVANF 265 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ L+ G VIP I++ +G + + + G Y +R+ IN Sbjct: 266 VDIPMRISRLLQLQKGDVIPIEKP--DRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINP 323 Query: 307 DQKSLKN 313 +L Sbjct: 324 VLNTLDE 330 >gi|332298232|ref|YP_004440154.1| flagellar motor switch protein FliM [Treponema brennaborense DSM 12168] gi|332181335|gb|AEE17023.1| flagellar motor switch protein FliM [Treponema brennaborense DSM 12168] Length = 344 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 97/285 (34%), Gaps = 8/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + S + + + ++ V + S + I S + + Sbjct: 48 SKEQIRTVSIMHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPTTLAVIN 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + ++++ L G + + R L+ +E+ + + I +I A + Sbjct: 108 MDPLKGNAILEIDPAITFSMIDRLFGGTGQGAKV--QRDLTDIEQSVMEGIIVRILANMR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P L + +E V + + + IP T+ Sbjct: 166 EAWTQVIDLRPRLGQIET--NPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYLTIE 223 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + + + K +++++ I ++DV+ L++G + Sbjct: 224 PIISKLSSQFWFSSVRRSSTTQYLGVLKEKLSDVDMDVVAEIGSVSLPIRDVLALRVGDI 283 Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + R LS K+ + C+ G +GK +++ +I + Sbjct: 284 VRLSNVRITDPITLSIGNKKKFLCQPGVIGKKMAVQVLSKITQGE 328 >gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1] gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] Length = 322 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 94/277 (33%), Gaps = 6/277 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q L + Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 E + E +E + ++ ++ + +P + Sbjct: 169 QAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++Q E ++ + ++V I + ++ L+D++ ++ G VIP Sbjct: 227 EMLDAGFQSDLDDQDERWVNALRQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEM 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 E I+ ANG + ++G N +++ + I Sbjct: 287 PED--MIMRANGVPAFKVKMGSHKGNLALQVIEPIER 321 >gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 322 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + R+ + + ++ + D++ Sbjct: 30 SEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGG 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF +HS + A + LV L++N G ++ Sbjct: 84 VQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E ++ + + Q L + E + E +E V Sbjct: 143 REFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPVMANIVGPSEAVVIS 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ ++ + +P + + + Q+ ++Q E ++ +NV + Sbjct: 201 TFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLT 260 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 T I ++ L+D++ ++ G VIP +L ANG + +LG +++ + Sbjct: 261 TTIAQRQLPLRDILHMRPGDVIPVEL--SDTLVLRANGVPSFKVKLGSHKGKMALQVIEP 318 Query: 304 I 304 I Sbjct: 319 I 319 >gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514] gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus CCSD1] gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561] gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513] gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514] gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus CCSD1] gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561] gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513] gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 332 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 98/284 (34%), Gaps = 6/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L + V+++ S + +S + Sbjct: 50 SKEQLRTLQMIFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIID 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + F + +NN +L+ +LG + +L +R + +E L + + Q+ ++ Sbjct: 110 AAPLEGLFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQMLSLFK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + +P+L + NE V +++ I +P TL Sbjct: 168 EPWSNILDINPSLIRVET--NSQFAQIISPNETVALCTLSIKINETEGIMNFCMPHLTLE 225 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + + + K + + + ++ T+K+ + +IG +I Sbjct: 226 PIVPKLTTKFWFSSMKKEEKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLDFEIGDII 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K + + K + G Y++RIT+ I + Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329 >gi|308273526|emb|CBX30128.1| hypothetical protein N47_D29370 [uncultured Desulfobacterium sp.] Length = 322 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 96/301 (31%), Gaps = 4/301 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIE-KISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + + + GK + + + FL + + L D+S Sbjct: 24 TESDVPEIDGAIGLYDFGKKSSPGHLSLPGLGMINERFINFLNESLPGTIGLSTDVSVDE 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 S KF S + + + LV ++ + G + +L Sbjct: 84 IDSIKFGDFCRSLPVPTSLNIFKMEPLKGFALLVFEGWLVFAFVDAMFGGKGVSHVKLEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + +E+K+ R + + L + + ++ + + + + Sbjct: 144 RGFTAIEQKIVSRIVDIVLVDLQKAWAEIKDLK--MVYTRSEMDPQFAGIAKPTDMIIAT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + I N + +P + + + +++ +K +L++N+ Sbjct: 202 KFALNIGNFTGGMTICLPYDVIEPIGEKLKENYRSEKFEADPVWKQHIKKKIQELDINLK 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + K T ++ + +K+ V+ + ++S + +G + IRI D+ Sbjct: 262 CTLGRIKITGREFLEMKVDDVLLTGQKVDDPIVVSVGDLNKFKGHVGSMNNKKAIRIADK 321 Query: 304 I 304 I Sbjct: 322 I 322 >gi|119953077|ref|YP_945286.1| flagellar motor switch protein FliM [Borrelia turicatae 91E135] gi|119861848|gb|AAX17616.1| flagellar motor switch protein FliM [Borrelia turicatae 91E135] Length = 352 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 100/293 (34%), Gaps = 9/293 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + SS + ++ + V + S + I S + + Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + +++ L G +TI + +R L+ +E+ + + I +I A + Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P + E V + + + I V +P T+ Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMVILVTLEVKIGKVEGLMNFCLPYITIE 234 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + +D K ++ + I K ++++++L G V Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDILREKLENTDMLLVAEIGEVKLKVREILSLAKGDV 294 Query: 265 IPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS--LKNF 314 + + IL K+ + C +G VG ++++T+++ + LK Sbjct: 295 LNLENSPIDKDLILKVGTKQKFKCRMGLVGNKISVQVTEKVGEVEDFDLLKEL 347 >gi|291613061|ref|YP_003523218.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus ES-1] gi|291583173|gb|ADE10831.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus ES-1] Length = 333 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 11/302 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + R+ + + + + +IS + Sbjct: 31 EGGVRAYNMATQERIVRG------RMPTMEIINERFARLFRISLYNFIHRSSEISVGPVR 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KFS I + + + + NLV ++++L G ++ R Sbjct: 85 VMKFSEFIRNLPVPANLNLVQVKPLRGSALFIFDPNLVFMVVDSLFGGDGRFHTRVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E ++ ++ + + + T Q+ E + NE V Sbjct: 145 FTQTEHRIIQKLLDVVFQTYGKSWETVQKLD--FEFIRSEVNPQFANIATPNEVVVVTTF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + V S + +P + + S Q + + +R+ V + Sbjct: 203 EVEFTGVGGSIHICMPYAMIEPIREMLYSTMQGDHVIADKRWLHMLSRQIQLAEVELTAV 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + T ++ V+ ++ G +IP + + + + C+ G Y +++ + Sbjct: 263 LGHATTNVEHVLKMRAGDIIPLE--VEDTIQVLVDTVPVMECKYGSSNGQYALKVEKMLA 320 Query: 306 FD 307 + Sbjct: 321 TE 322 >gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] Length = 322 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 96/297 (32%), Gaps = 12/297 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + ++ + D++ Q Sbjct: 34 SVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVM 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +HS + A + LV L++N G ++ R + Sbjct: 88 KFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ + + Q L + E + E +E V ++ Sbjct: 147 PTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHI 204 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ + +P + + + Q+ ++Q E ++ +NV + T I Sbjct: 205 ELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIA 264 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ L+D++ ++ G VIP ++ ANG + +LG +++ + I Sbjct: 265 QRQLPLRDILHMRPGDVIPVEL--SDSLVMRANGVPSFKVKLGSHKGKMALQVIEPI 319 >gi|212709505|ref|ZP_03317633.1| hypothetical protein PROVALCAL_00547 [Providencia alcalifaciens DSM 30120] gi|212687843|gb|EEB47371.1| hypothetical protein PROVALCAL_00547 [Providencia alcalifaciens DSM 30120] Length = 335 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 36/307 (11%), Positives = 87/307 (28%), Gaps = 10/307 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 N P P R+ + + + + + DI+ + + Sbjct: 33 DNVRPYDPNTQRRVFRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGAIKI 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + + LV ++NL G + + Sbjct: 87 EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ R + + I N N+ V T Sbjct: 147 TNTEQRIINRMLKLALGAYRDAWKPIADVEVEYVRSE-IQVKFTNITTSPNDIVVTTPFL 205 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + I N F + IP + + + ++E + + + + + + Sbjct: 206 VEIGNTVGEFSICIPIAMIEPLRERLTNPPMEQGHQENEAWVTNLVTQVKRSELELIANL 265 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ L+ G V+P I++ +G + + + G Y +R+ IN Sbjct: 266 VDIPLRISRLLQLQKGDVLPIEKP--DRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINP 323 Query: 307 DQKSLKN 313 +L Sbjct: 324 VLNTLDE 330 >gi|150021178|ref|YP_001306532.1| flagellar motor switch protein FliM [Thermosipho melanesiensis BI429] gi|149793699|gb|ABR31147.1| flagellar motor switch protein FliM [Thermosipho melanesiensis BI429] Length = 329 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 98/292 (33%), Gaps = 7/292 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K E+ L + + L F ++ V ++ + I S K Sbjct: 40 DFLRPRKFSKEQERTLQMLHENFARTLSTYFSGRLRSFVAVNLVGIDQMTYDEFIKSIKN 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + S + + + + +LE LLG NR + E ++ ++ + Sbjct: 100 PSFITIFSAKEFVGSAVLDIDLAIFYGILEILLGGPGSMTE--INRPPTETEIEVMRKEV 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 I L+Q +T P +E + NE V I + I NV + Sbjct: 158 VNILTNLSQAWTTVYSFVPVIEAIET--NPQFVQVVALNEMVLVITFFVNIGNVEGYVNI 215 Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 P + + K + SE+ + + V + I TL D+ Sbjct: 216 CWPSSLIEPIGEKLTTQSWFKTKQKVVSEEDMKALKENLARTIVELSATIGETNLTLWDI 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + L++G VI ++ + NGK+ + G Y ++I + + ++ Sbjct: 276 LNLEVGDVIRLNTFKEDPLKIKLNGKDKFLGAPGVFKGKYAVKILEVFDEEE 327 >gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM 16841] gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM 16841] Length = 326 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 9/312 (2%) Query: 2 RGQSIHKNTSPLHPILLA--RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 G+ ++ + T K + + Y + L + V Sbjct: 19 NGELDAEDMKEKDEKQVKNYDFTRPAKFSKEHLRTLEIIFEHYGRLLSTNLPVYLRKTVQ 78 Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + ++ +S ++ + ++S S + I ++NL +++ +LG + Sbjct: 79 VEVMNSEAVTYSEFTNALSNPVLLGLVNVSPLSGSIIIELADNLGYAIVDRMLGGLGTPL 138 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 + R S +E + +R ++L + S+ E SP LE + E Sbjct: 139 DKP--RDFSEIELLILERIYNVCVSLLPEPWSSVCEISPRLERIET--NSQFAQIISPTE 194 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTY 236 + + +++ I +V + +P TL N E+ + D Sbjct: 195 MIALVTLHIKIGDVEGLMNICLPYLTLESVMDKLNTKFWYSNLQEHDDKQYTDAIEALIS 254 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + + ++ D V L++G +I + + ++ G VG NY Sbjct: 255 KAKIPVKAVLGNSTISVDDFVNLQVGDIIRLDSGVNQDLNIFVGNIKKFTALPGAVGDNY 314 Query: 297 TIRITDRINFDQ 308 +R+T + +Q Sbjct: 315 AVRVTSVVREEQ 326 >gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 2250] gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. B076] gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. race 4] gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori str. 301020] gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 322 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + R+ + + ++ + D++ Sbjct: 30 SEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGG 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q KF +HS + A + LV L++N G ++ Sbjct: 84 VQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E ++ + + Q L + E + E +E V Sbjct: 143 REFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVIS 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ ++ + +P + + + Q+ ++Q E I+ +NV + Sbjct: 201 TFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWINALKEDVLDVNVPLT 260 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 T I ++ L+D++ ++ G VIP ++ ANG + +LG +++ + Sbjct: 261 TTIAQRQLPLRDILHMRPGDVIPVEL--SESLVMRANGVPSFKVKLGSHKGKMALQVIEP 318 Query: 304 I 304 I Sbjct: 319 I 319 >gi|189911092|ref|YP_001962647.1| flagellar motor switch protein FliM [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775768|gb|ABZ94069.1| Endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 341 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 102/314 (32%), Gaps = 17/314 (5%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 K + K + + ++ + ++ V + S Sbjct: 32 EQKKVKIYDFKRPDKF------SKNQIRTLQMMHEIFARLATTGLSAQLRALVVVHVASV 85 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + I S + ++ + + ++ T+++ L G E+ NR Sbjct: 86 DQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGESSKV--NR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 LS +E + + I +I L + ST + P L + + N+ V I Sbjct: 144 ELSDIELSVMEGIIVRILGNLRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLIT 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242 + + V L IP T+ + + + ++ + Q+ + + Sbjct: 202 LETKVGEVEGMTNLCIPYITIEPIINKLSAQYWYSSIRKGEVDENRAVIQERLDQVKIPL 261 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + +L D++ L +G VI KT ++ + + GRVG I+I Sbjct: 262 ISEVGSVDISLNDLMNLHVGDVIKLENTPIKTDLMVKVGDRSKFKATPGRVGNRLAIQIG 321 Query: 302 DRINFDQKSLKNFL 315 D I + L Sbjct: 322 DSI---EDIPDELL 332 >gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] Length = 323 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 98/281 (34%), Gaps = 8/281 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + Y + + + + + S + + I S + + S Sbjct: 47 SKEHLRTLYMIHENYGRLVANFLSAYLRASIQVKIVSVEQMTYEDFILSLPTPTLMNVFS 106 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + N + +++ L G E + + NR L+ +E + +R +++ L+ Sbjct: 107 MEPLKGSAVLETNMNFIFPIIDLLFGGRGEMVAR--NRELTEIELHVLRRLNSRMLEQLS 164 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 S Q +P LE+ + NE V I M T+ L +P L Sbjct: 165 YSWSDIQNITPKLENMET--NPQFTQAISPNETVAVITMGTTVGKYEGLLNLCLPYMLLE 222 Query: 208 KTTLISLSSQ----NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +S D + ++ V + I + ++D + L++G Sbjct: 223 PVISRLSASHWFATGGEREARPDYRTVVEKILAEVPVELIAYIGRTRLPVRDFIQLQVGD 282 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 VI L +G + + G V K +++T+ + Sbjct: 283 VITLEKTVGEDLELYVDGHHKFQVQPGIVNKKIAVQVTEVV 323 >gi|226944505|ref|YP_002799578.1| flagellar motor switch protein [Azotobacter vinelandii DJ] gi|226719432|gb|ACO78603.1| flagellar motor switch protein [Azotobacter vinelandii DJ] Length = 350 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 44/330 (13%), Positives = 109/330 (33%), Gaps = 19/330 (5%) Query: 1 MRGQSIHKNTSPLHPILLARL-----TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMD 55 ++G S +++SP P R+ + + + + ++ + Sbjct: 16 LKGVSGEEDSSPSEPADTQRIRPYNPATQHRVIRERLHALDIINERFARYFRMSLFNLIR 75 Query: 56 LDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS 115 DI+ S + +S + + ++ + +LV +++NL G Sbjct: 76 RSADITVDSVRYQSYSDFARNVPVPTNINLLAMKPLRGTALVVFPPSLVFMVVDNLFGGD 135 Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 + + R + E+++ +R + + ++ K Sbjct: 136 GRFLTKSEGREFTHTEQRIIRRLLGLALEAYQSAWKSVYPLE--IDYLRSEMQAKFANIT 193 Query: 176 -LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFAR 233 NE V ++ + N+AS F +++P + + N S ++ A Sbjct: 194 SSPNEIVINSTFHLEVGNLASDFNIVMPYLMIEPLRSLLNGPLNDSHPDEERQWGKRMAS 253 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q + + + V+ LK+G V+P + +G + CE G Sbjct: 254 EIKQSQIELIADFAGIDLCIGQVMALKVGDVLPIELP--ETVVARVDGVPVMRCEYGSRN 311 Query: 294 KNYTIRITDRIN--------FDQKSLKNFL 315 +++ + I+ ++ +K L Sbjct: 312 GQRALQVKELIDHSSANAGATTERFIKGSL 341 >gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] Length = 329 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 97/285 (34%), Gaps = 7/285 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D+S Q KF +H+ + Sbjct: 48 RMPTLEMINERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRP 107 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 S LV L++N G ++ R + E ++ + + Q+ L + Sbjct: 108 LRSTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAW 166 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + + LE +E V ++ ++ + +P + Sbjct: 167 APVLKLE--LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVR 224 Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ + + + + ++VN+ I KK TL DV+ K G VIP Sbjct: 225 ELLDAGVQSDVDEKDDRWGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEM 284 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKN 313 + AN + +LG Y++++ + I ++SLKN Sbjct: 285 P--EYVTVRANNVPTFRGKLGSSNGKYSVQMKESIKAQMKESLKN 327 >gi|330808225|ref|YP_004352687.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376333|gb|AEA67683.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 322 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 94/277 (33%), Gaps = 6/277 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q L + Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 E + E +E + ++ ++ + +P + Sbjct: 169 QAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++Q E I+ + ++V I + ++ L+D++ ++ G +IP Sbjct: 227 EMLDAGFQSDLDDQDERWINALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDIIPVEM 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 E ++ ANG + ++G N +++ + I Sbjct: 287 PED--MVMRANGVPAFKVKMGSHKGNLALQVIEPIER 321 >gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] Length = 322 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 95/299 (31%), Gaps = 12/299 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + R+ + + ++ + D++ Q Sbjct: 34 SVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQGM 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +HS + + LV L++N G ++ R + Sbjct: 88 KFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ + + Q L + E + E +E + ++ Sbjct: 147 PTELRVVRMVLEQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHI 204 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ + +P + + + Q+ ++Q E + ++V + + Sbjct: 205 ELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVA 264 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ L+D++ ++ G VIP I+ ANG + +LG N +++ + IN Sbjct: 265 RRQLRLRDILHMQPGDVIPVELP--QEMIMRANGVPSFKVKLGSHKGNLALQVIEPINR 321 >gi|229591843|ref|YP_002873962.1| flagellar motor switch protein FliM [Pseudomonas fluorescens SBW25] gi|229363709|emb|CAY51095.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25] Length = 322 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 91/277 (32%), Gaps = 6/277 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q L + Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 E + E +E + ++ ++ + +P + Sbjct: 169 QAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++Q E + ++V + + ++ L+D++ ++ G +IP Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDIIPVEL 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 I+ ANG + +LG N +++ + I Sbjct: 287 P--EEMIMRANGVPSFKVKLGSHKGNLALQVVESITR 321 >gi|303248092|ref|ZP_07334357.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans JJ] gi|302490491|gb|EFL50399.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans JJ] Length = 326 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 89/297 (29%), Gaps = 10/297 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 R+ + + + + M D++ S Sbjct: 32 DSGVVVFDLSNQDRIIRG------RMPVLEIINDRFARLASNAMANAMRKRADVNPISID 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + S + L N + + LV ++E+ G + ++ R Sbjct: 86 MSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVDSRLVFAMVESFFGGAGSQP-KIEGRD 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E+ + R + + + E ++E + ++ V + Sbjct: 145 FTPIEQAIINRVVRIALENMEESWQPVHEV--HIELVRSEVNPQFAAIVPPSDVVIVVTF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +EN S ++ +P T+ S Q + I F + + V + R Sbjct: 203 EVELENAIGSLIVCLPYATIEPIRTKLYASFQTERLEVDHAWIARFKERLMETPVEMLVR 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T + +++LK G +I + G + G V N +I Sbjct: 263 FGRSQVTGRQLLSLKPGDIIMLDNDVDALLEAEVQGVRKFRGIPGLVKSNKAFQIVK 319 >gi|192360300|ref|YP_001982201.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107] gi|190686465|gb|ACE84143.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107] Length = 339 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 97/298 (32%), Gaps = 12/298 (4%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 R+ + + ++ + D+S Q K Sbjct: 33 VRAYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRTADVSVGGVQIQK 86 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 F +H+ + I LV L++N G ++ R + Sbjct: 87 FGEYVHTLYVPTSLNMVKFRPLRGTALIILDARLVFKLVDNFFGGDGR-HAKIEGREFTP 145 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E ++ + + Q L + + E + +E V ++ Sbjct: 146 TELRVVQMVLNQAFVDLGEAWKAVFPV--SFEYVHSEVNPSLANIVSPSEVVVVSTFHIE 203 Query: 190 IENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 ++ + +P + + + Q+ SE Q E + V+++ + Sbjct: 204 LDGGGGEMHITVPYSMIEPIREVLDAGLQSDSEEQDERWVRALREDVLAAKVDLECDVVR 263 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + TL+D+V LK G +IP +++ANG ++ +LG+ N ++I + I+ Sbjct: 264 RDITLRDIVDLKEGDIIPVEFP--DYHVVTANGVPMFRTQLGQHNDNLALKILEFIDR 319 >gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] Length = 329 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 106/309 (34%), Gaps = 14/309 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q K R K + + + + + L F ++ V S Sbjct: 30 QEEEKKVRQYDFKRAVRF------SKDQIRSLTRIHEHFTRMLTTFFSAQLRTYVQFSVN 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S + + IHS + + + F I + N+ +L+ LLG + ++ Sbjct: 84 SVEQLPYDEFIHSIPSMTMINLIEAPPLNGRFIIEVNPNISYAMLDRLLGGPGVEMDKIE 143 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 + + +E ++ + + + + E + + NE V Sbjct: 144 S--FTEIEMRILTQLYKRAFSTYGDAWESIAEIKAEMSAVEV--NPQFLQLVSPNETVVL 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS----SQNKSENQSEDLIDPFARKTYQLN 239 I++ +TI V+ + + +P T+ S + N S+ +P + Sbjct: 200 ISIGVTIGEVSGTINVCLPFVTIEPVLSKLSSHYWMQEANRRNASQSSKEPLKAQLMNST 259 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + T D++ L++G + K + +++ ++G GK ++ Sbjct: 260 VEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEPLSVMVGENKVFKGQVGVSGKRMAVQ 319 Query: 300 ITDRINFDQ 308 + R+ ++ Sbjct: 320 VLHRVKEEE 328 >gi|300722647|ref|YP_003711937.1| flagellar motor switch and energizing protein [Xenorhabdus nematophila ATCC 19061] gi|297629154|emb|CBJ89750.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus nematophila ATCC 19061] Length = 335 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 84/303 (27%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S P P R+ + + + + + DI+ + Sbjct: 30 SGESEVRPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L +LV ++NL G ++ Sbjct: 84 IKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFEPSLVYIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + + N N+ V T Sbjct: 144 REFTYTEQRIINRMLKLALDAYRDAWDSIFKIEVEYVRSE-MQVKFTNITTSPNDIVVTT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNID 243 + I + F + IP + + ++ + ++ + + Sbjct: 203 PFQVEIGALTGEFNICIPFAMIEPLRERLTNPPVENLRQEDGQWRKSLVKQVQHSELELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I+ +G + + G + Y +R+ Sbjct: 263 ANFVDIPLRLSKILELKAGDVLPIEKP--ERLIVHVDGVPVLISQYGTLHGQYALRVEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|238924157|ref|YP_002937673.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC 33656] gi|238875832|gb|ACR75539.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC 33656] gi|291524890|emb|CBK90477.1| flagellar motor switch protein FliM [Eubacterium rectale DSM 17629] Length = 326 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 42/308 (13%), Positives = 103/308 (33%), Gaps = 13/308 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ + ++ K + + Y + L + V + Sbjct: 29 ENSEQTVKDYDFARPSKF------SKEHLRTLEIIFEHYGRLLTTNLPVYLRKSVQVEVM 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + ++ +S ++ + + + N + ++ L +++ +LG +++ + Sbjct: 83 NSEAVTYSEFTNALSNPVLLGIVNFAPLHGNIIVEMASGLGYAIVDRMLGGRGDSLDKT- 141 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R S +E + +R + +L + + SP+LE + +E + Sbjct: 142 -REFSEIELLIIERILVICINLLQEPWQNVLDISPHLERIET--NSQYAQIISPSEVIAI 198 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240 I MN+ I +V + +P TL N + + + + + Sbjct: 199 ITMNIKIGDVEGLMNICLPYITLESVIDKLNTRYWYSNIQNHDETNYRNAIESLIQKSQI 258 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + ++KD TL G VI + + ++ G G Y +RI Sbjct: 259 PVKAVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTALPGSSGDKYAVRI 318 Query: 301 TDRINFDQ 308 T + +Q Sbjct: 319 TSVVREEQ 326 >gi|222147563|ref|YP_002548520.1| flagellar motor switch protein [Agrobacterium vitis S4] gi|221734551|gb|ACM35514.1| flagellar motor switch protein [Agrobacterium vitis S4] Length = 319 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 169/305 (55%) Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70 P+ LLARLTG LGD K++EK+ G LY +FLP +F + +L +++ Y +SG Sbjct: 14 KPMDHALLARLTGGLGDMKSVEKLCQDFGQLYSEFLPDVFHSETNLTIEVGYLGFKSGLM 73 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +I S +NFV + SL +WS NF + C N VITL+E LLG E I + R LS + Sbjct: 74 RDLIASLGDNFVLANTSLRNWSQNFVMACGNGFVITLMETLLGGMQEFIGEPIKRPLSNI 133 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 E LA +I+ VL ++ T P E ++ + + EF ++M++ + Sbjct: 134 ELDLAVMVFERIANVLRSGVNATGGFEPIFERPHNWENRLRQDGEQIEEFGALVHMSIKL 193 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 + S F LIIPQ+TLLKT + + S+N+ ++ + A + + V ++ RI+L+ Sbjct: 194 GKITSDFALIIPQKTLLKTNVTAPKSKNQVSKARKEWAEQLAEQVRKSQVTLEGRISLQS 253 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +L V L G VIPFL + +SANG+++Y+CE GR G +YT+R+ + D + Sbjct: 254 LSLLTVSKLAAGDVIPFLEKGDVTVDVSANGRDLYTCEFGRAGDHYTVRVKSMHSTDSEL 313 Query: 311 LKNFL 315 L++ + Sbjct: 314 LRHLM 318 >gi|291529031|emb|CBK94617.1| flagellar motor switch protein FliM [Eubacterium rectale M104/1] Length = 326 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 42/308 (13%), Positives = 103/308 (33%), Gaps = 13/308 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ + ++ K + + Y + L + V + Sbjct: 29 ENSEQTVKDYDFARPSKF------SKEHLRTLEIIFEHYGRLLTTNLPVYLRKSVQVEVM 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + ++ +S ++ + + + N + ++ L +++ +LG +++ + Sbjct: 83 NSEAVTYSEFTNALSNPVLLGIVNFAPLQGNIIVEMASGLGYAIVDRMLGGRGDSLDKT- 141 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R S +E + +R + +L + + SP+LE + +E + Sbjct: 142 -REFSEIELLIIERILVICINLLQEPWQNVLDISPHLERIET--NSQYAQIISPSEVIAI 198 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240 I MN+ I +V + +P TL N + + + + + Sbjct: 199 ITMNIKIGDVEGLMNICLPYITLESVIDKLNTRYWYSNIQNHDETNYRNAIESLIQKSQI 258 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + ++KD TL G VI + + ++ G G Y +RI Sbjct: 259 PVKAVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTALPGSSGDKYAVRI 318 Query: 301 TDRINFDQ 308 T + +Q Sbjct: 319 TSVVREEQ 326 >gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168] gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168] Length = 334 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 99/289 (34%), Gaps = 7/289 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + + + L ++ VD S + + I S E Sbjct: 40 DFRRPDKLSKEQMRTLEMIHENFARILTTTLSTQLRSRVDFEVASIEQLTYEEFIRSLPE 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + + ++ F + ++ +++ L G + ++ R+ + +EK + ++ I Sbjct: 100 PTIIGISEMEPFNGQFIFEINPDIGFAIIDRLFGGMGNPLDRV--RTYTDIEKVVLRKVI 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + + L + P L + SN+ I M+ I N + Sbjct: 158 SWFLSGLPEAWENIIRVKPRLR--EIESNPQFTQVVPSNDMTILITMSAKIANSEGLVNV 215 Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 IP + N E ++ I+ +K + + + + + T+ D+ Sbjct: 216 CIPYIMIEPIVPQLNAQQWFSNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDL 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + L+ G VI + + + + G K+ ++ITD I+ Sbjct: 276 LYLQPGDVIRLDKKAEEKVDIRIGKNVKFQGVAGVSNKHMAVKITDVIS 324 >gi|326204614|ref|ZP_08194470.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM 2782] gi|325985181|gb|EGD46021.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM 2782] Length = 328 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 95/281 (33%), Gaps = 7/281 (2%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 ++ + Y + + + V + S + ++S +S + + Sbjct: 52 KRTLQFINENYARLVQSFLSGYLRSLVQVDVLSVDALQYSEFSNSLANPIILGIVDFTPL 111 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + ++ L++ +LG ++ ++ RS + +E + +R I QI ++ + Sbjct: 112 NGSVIFEMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMREPWE 169 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 + P LE + NE V I +N+ + V + IP T+ Sbjct: 170 SIIAIKPRLEKIET--NAQFAQIIHPNEMVALITLNVVVGEVKGMINICIPHMTVEPIMP 227 Query: 212 ISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 N + E K V + + ++ + + L+ G V+P Sbjct: 228 KLSTKLWFTNVENEKIEHNKSDIEFKIEHTYVPVRAVLGKTSISISEFLDLQSGDVLPLD 287 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + ++ + G ++IT+ + ++ Sbjct: 288 TNVNGDLEILVGDLPKFNAKPGVKKNKVAVKITEVLRREED 328 >gi|168187522|ref|ZP_02622157.1| flagellar motor switch protein FliM [Clostridium botulinum C str. Eklund] gi|169294580|gb|EDS76713.1| flagellar motor switch protein FliM [Clostridium botulinum C str. Eklund] Length = 331 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 101/285 (35%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + ++ +V ++ + Q + IHS + + Sbjct: 48 SKDHIRTLELIHDNFARIISNYLTAQVRTNVKVNIETVQQITYEEFIHSVPNPTILTVFK 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + S + + +++ LLG S + R L+ ++K + K+ + L Sbjct: 108 MPPLSGSILFETNPQFAYQIIDVLLGGSGTGQYKT--RELTDIDKNIIKQINNGLITNLK 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 E P +E N NE V I ++ + ++ + IP ++ Sbjct: 166 LAWEDVMEVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIE 223 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 K + + E + ++ + + + + K +++ ++L IG V Sbjct: 224 KVLDKLVVQYWFRENNVESLEGSKEKLKKRMKVVELPMSVVLGSTKLDVREFLSLCIGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + + + + G VGKN ++I D I+ D + Sbjct: 284 ITLDALTSSPVKVMVEDEPYLLAKPGIVGKNKGVQILDIIDKDVE 328 >gi|288962686|ref|YP_003452980.1| flagellar motor switch protein [Azospirillum sp. B510] gi|288914952|dbj|BAI76436.1| flagellar motor switch protein [Azospirillum sp. B510] Length = 374 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 105/302 (34%), Gaps = 3/302 (0%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + RL K + + + L ++ +V+ S + + +++ Sbjct: 74 SAIQRLVSSTTVNKDRLPMLDVVFDRMVRMLNTSLRQFASTNVEASLSKIEWLRYTDFQD 133 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + + + A W + + + L+ +++ LLG ++ R+ +++E+K+ Sbjct: 134 AIELPALIGVARAEPWDNQMLVTIDSALIYCMMDVLLGGRRSRPGRIDGRAYTSIERKMT 193 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 +R + + L Q + + + T + + + + + +E Sbjct: 194 ERMMKVVLQDLGQSFDPLAQVDFVFDRLEV--NPQFATITRATNAIIRVRIAVEVERRTG 251 Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 ++IP TL + + + + + + + K L Sbjct: 252 HIDIVIPYATLEPIRGKLVQMFMGEKFGHDTVWESHLKNELMRSKLELVAVLAETKVPLG 311 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 +V+ + GQ + + ++ + +++ +G+ N ++I ++ Q+ + Sbjct: 312 EVLAWQKGQSLKLRISPDSTVMVFSKTIPLFAGHMGQRNDNIAVKIDTDLDTKQELIDGL 371 Query: 315 LH 316 L Sbjct: 372 LS 373 >gi|291538507|emb|CBL11618.1| flagellar motor switch protein FliM [Roseburia intestinalis XB6B4] Length = 326 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 97/292 (33%), Gaps = 7/292 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + Y + L + +V + + ++ +S ++ Sbjct: 39 DFARPAKFSKEHLRTLEIIFEHYGRLLSTNLPVYLRKNVQVEVMNSEAVTYSEFSNALSN 98 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + S + + I + NL +++ +LG + + R S +E + +R Sbjct: 99 PVLLGIVNASPLNGSIVIEMAQNLGYAVVDRMLGGKGVPLDKP--RDFSEIELLIIERIF 156 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 +L + E P LE + E + + +N+ I +V + Sbjct: 157 NVAVDLLVEPWENVCELEPRLERIET--NSQFAQIISPTEMIALVTLNVKIGDVEGLLNV 214 Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +P TL + E + + + + I + ++ D Sbjct: 215 CLPYLTLESIMDKLNTKYWYSSLQEKDEQQYTETIEALISKAPMPIKAVLGNSSISVNDF 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + L++G +I + + + ++ G G +Y +RIT I +Q Sbjct: 275 LGLQVGDIIRLDTKVDQELSVFVGSIKKFTALPGETGDDYAVRITSVIREEQ 326 >gi|261344127|ref|ZP_05971771.1| flagellar motor switch protein FliM [Providencia rustigianii DSM 4541] gi|282567719|gb|EFB73254.1| flagellar motor switch protein FliM [Providencia rustigianii DSM 4541] Length = 335 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 36/307 (11%), Positives = 89/307 (28%), Gaps = 10/307 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 N P +P R+ + + + + + DI+ + + Sbjct: 33 DNVRPYNPNTQRRVFRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGAIKV 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + + LV ++NL G + + Sbjct: 87 EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ R + + I N N+ V T Sbjct: 147 TNTEQRIINRMLKLALNAYRDAWRPIADVEVEYVRSE-IQVKFTNITTSPNDIVVTTPFL 205 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTRI 246 + I N F + IP + ++ + ++E + + + + + + Sbjct: 206 VEIGNTVGEFSICIPIAMIEPLRERLINPPTEQGHQENEAWVTNLVTQVKRSELELVANL 265 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ L+ G V+P I++ +G + + + G Y +R+ IN Sbjct: 266 VEIPLRISSLLQLQKGDVLPIDKP--DRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINP 323 Query: 307 DQKSLKN 313 +L Sbjct: 324 VLNTLDE 330 >gi|302037615|ref|YP_003797937.1| flagellar motor switch protein FliM [Candidatus Nitrospira defluvii] gi|300605679|emb|CBK42012.1| Flagellar motor switch protein FliM [Candidatus Nitrospira defluvii] Length = 323 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 86/276 (31%), Gaps = 3/276 (1%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + + + + ++ S Q KF I F+ ++ Sbjct: 50 RMPTMEMINDRFTRQQSISWSAVLREKIEFSVLGTQIMKFGDFIQKVPVPSSFNLFAMEP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 N LV +++ G +T + R +T++ +L K+ + Q A L + Sbjct: 110 MRGNGLFVMDAMLVYLIVDFFFGGKVQTHVKPEGREFTTIQLRLIKKLVQQALADLEKAW 169 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + + ++E V + + + + +++ + P L Sbjct: 170 QAVMPVK--IGYLRSESNPQFAMVVTTSEIVVVVTLQVHLGDISREMFIAYPYSMLEPIK 227 Query: 211 LISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 S + Q F + +V + ++ + ++D++ G V+ Sbjct: 228 EKLYSGLFADNVEQDSSWGSRFKDSLQECDVALTVQLGTARINVQDLLNFNPGDVLMLDQ 287 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + G + + G N+ R+T + Sbjct: 288 HPGDPMLCLVEGDPKFQGQPGIFKGNHACRVTKILG 323 >gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum 255-15] gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum 255-15] Length = 327 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 43/311 (13%), Positives = 108/311 (34%), Gaps = 14/311 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 +R Q + R K + + + + + L F ++ V Sbjct: 27 IRSQEEERRVKVYDFKRALRF------SKDQMRNLTRIHEQFARVLTTHFSAQLRTYVQF 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + IHS + + +L + N+ +L+ LLG E + Sbjct: 81 TVNTVEQLPYDEFIHSIPNMTLINLVNLHPLDGRVIFEVNPNIAYAMLDRLLGGPGEGMN 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ N L+ +E ++ + + + E E + NE Sbjct: 141 KIEN--LTEIETRILTQLFKRAFVQYGAAWESIAEIEA--EYDDLEINPQFLQLVSPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQNKSENQSEDLIDPFARKTY 236 V +++ +T+ V+ + + +P TL S Q K ++ + + Sbjct: 197 VILVSIYVTVGEVSGTLNVCLPFVTLEPIIPKLSSHFWMQQEKRKSADNQESEHMQTQLM 256 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 V++ + + + +++ L++G + R L + ++++ G GK+ Sbjct: 257 GSIVDLKAVLGQTELSFGELLHLEVGDCLSLQTRTSDPVELFVDDRKMFKARPGLNGKHL 316 Query: 297 TIRITDRINFD 307 +++ RI + Sbjct: 317 ALQVLQRIEEE 327 >gi|116328061|ref|YP_797781.1| flagellar motor switch protein FliM [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331486|ref|YP_801204.1| flagellar motor switch protein FliM [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120805|gb|ABJ78848.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125175|gb|ABJ76446.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 341 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 46/315 (14%), Positives = 103/315 (32%), Gaps = 17/315 (5%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S K + K + + + + ++ V + S Sbjct: 31 SEQKKVKIYDFKRPDKF------SKDQIRTLQMMHETFARLATTGLSAQLRALVSVHVAS 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + I S + ++ + + ++ T+++ L G E + Sbjct: 85 VDQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGEQAK--IS 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E + + I +I + + ST + P L + + N+ V I Sbjct: 143 RELSEIEMSVMEGIIVRILGNMRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLI 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVN 241 + I V L IP T+ + + + ++ + Q+ + Sbjct: 201 TLETKIGEVEGMTNLCIPYITIEPIINKLSAQYWYSSIRKGELDENRAVIQERLDQVAIP 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + ++ D + L +G V+ + ++ I+ ++ + C GRVG I+I Sbjct: 261 LIAEVGSVDVSINDFMNLSVGDVVKLENTSTRSEMIVKVGERKKFKCLPGRVGSRLAIQI 320 Query: 301 TDRINFDQKSLKNFL 315 DR+ + L Sbjct: 321 GDRV---EDIPDELL 332 >gi|226327727|ref|ZP_03803245.1| hypothetical protein PROPEN_01600 [Proteus penneri ATCC 35198] gi|225203431|gb|EEG85785.1| hypothetical protein PROPEN_01600 [Proteus penneri ATCC 35198] Length = 343 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 88/308 (28%), Gaps = 10/308 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + DI+ + Sbjct: 40 EPDIQPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIK 93 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L NLV ++NL G + R Sbjct: 94 IHPYHDFARNLPVPTNLNLVHLKPLRGTALFTFEPNLVYIAVDNLFGGDGRFPIPVEGRE 153 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ + + + + + N N+ V T Sbjct: 154 FTNTEQRIINKMLKLALDAYRDAWDSIFKIQVEYVRSE-MQVKFTNITSSPNDIVVTTPF 212 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245 + I ++ F + IP + ++ ++ + +D + + + Sbjct: 213 QVEIGSMVGEFSICIPFAMIEPLRERLINPPIENVRQEDGVWLDSLVNQVQHSELELVAN 272 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L V+TLK G VIP I +G + + + G V Y +R+ IN Sbjct: 273 FTDIPLRLSKVLTLKEGDVIPIDKP--ERLIAHVDGVPVLTSQYGTVNGQYALRVEHLIN 330 Query: 306 FDQKSLKN 313 +L Sbjct: 331 PVLNALDE 338 >gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] Length = 375 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 100/292 (34%), Gaps = 5/292 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + +L + + + V++ S +S + S + F+ Sbjct: 60 SKEQMRAFQALHEGFSREFGAALSGMLRAIVEVKLISVDQLTYSEFVFSLENPTCFNLLE 119 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + S +++ +++ LLG E+IP + +R L+ +E +L R + L Sbjct: 120 SKGLEGHLILDLSPSIIFPIVDRLLGGGKESIPSIPSRPLTEIELQLVSRITLLVINGLE 179 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 L+ + NE + ++ +T+ V L IP T+ Sbjct: 180 NAWHNVCSL--GLKVTQIESNPQLVQIVPPNEVIVLVSFEITMGEVRGIMNLCIPFNTIE 237 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + + V + + + T +D+ L +G V Sbjct: 238 PLSGKLSSDTWSAYQKKGLDPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLAHLAVGDV 297 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 I H ++ + G ++ + G V IR+T + + L+ L Sbjct: 298 IMTEHPKEDGLEVVVEGCPMFMAKPGAVKGKKAIRVTGMVAHSRDILREKLQ 349 >gi|220929456|ref|YP_002506365.1| flagellar motor switch protein FliM [Clostridium cellulolyticum H10] gi|219999784|gb|ACL76385.1| flagellar motor switch protein FliM [Clostridium cellulolyticum H10] Length = 328 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 7/281 (2%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 ++ + Y + + + V + S + ++S +S + + Sbjct: 52 KRTLQFINENYARLVQSFLSGYLRSLVQVDVLSVDALQYSEFSNSLANPVILGIVDFTPL 111 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + ++ L++ +LG ++ ++ RS + +E + +R I QI ++ + Sbjct: 112 NGSVIFEMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMREPWE 169 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 + P LE + NE V I +N+ + V + IP T+ Sbjct: 170 SIIAIKPRLEKIET--NAQFAQIIHPNEMVALITLNVVVGEVKGLINICIPHITVEPIMP 227 Query: 212 ISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 N + E K V + + ++ + + L+ G V+P Sbjct: 228 KLSTKLWFTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGDVLPLD 287 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + G I+IT+ + ++ Sbjct: 288 TNVNGDLEILVGDLPKFKAKPGVKKNKVAIKITEVLRREED 328 >gi|299131782|ref|ZP_07024977.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2] gi|298591919|gb|EFI52119.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2] Length = 399 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 102/293 (34%), Gaps = 4/293 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +F+ Sbjct: 86 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFADY 145 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V + W + ++L+ ++++ LLG +T ++ R +T+E Sbjct: 146 LNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIET 205 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR + + A Q + ++ + + + + +E+ Sbjct: 206 NLVKRLVEVVLADAEQAFRPLSPVTFTIDRLET--NPRFAAISRPANAAILVRLRVDMED 263 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + L + + A + + + +D + Sbjct: 264 RGGNVELLLPYATIEPIRNVLLQMFMGEKFGRDPIWEGHLATEIAKAEMYVDAVLYEADM 323 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 LK +++LK+G +P R + + +GRVG IR++ + Sbjct: 324 PLKQLMSLKVGDTLPLDIRPDAMVSVRCGDVTLSEGRMGRVGDRVAIRVSKPL 376 >gi|58039165|ref|YP_191129.1| flagellar motor switch protein FliM [Gluconobacter oxydans 621H] gi|58001579|gb|AAW60473.1| Flagellar motor switch protein FliM [Gluconobacter oxydans 621H] Length = 343 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 103/306 (33%), Gaps = 10/306 (3%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 T + R+ G + + + + L + +V+ S S + Sbjct: 30 TGAADSSGIERVVSTSGVSSERLPMLEVVFDRFTRILTTSLRNFTSDNVEASMDRLGSQR 89 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-------TIPQL 122 F + + +F+ W + + S++L+ ++++ LLG + Sbjct: 90 FGDYLENVPGQAMFAVFKAEEWDNYGVVVLSSSLIYSIVDALLGGHVRGDSALTAPASRQ 149 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + +E+ L + + I L S + + E + + V Sbjct: 150 TGRHHTAIERALIEPMVRIILDDLETSFSPLCAVNFHFERLEM--NSRFAMICRAGNGVV 207 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVN 241 T + +E +++P TL I L + + AR+ +Q ++ Sbjct: 208 TARFGIDMEGRGGDVDIVLPHATLEPVRDILLQQFMGEKFGHDGIWENHLARELWQTDLT 267 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 +D + + LKD++ L G + + L +++ +GR ++I Sbjct: 268 LDAVLEEQTMNLKDIMKLAPGDQLVLRRKPDASVSLRCGEHVLFTGRVGRKQGQVAVKIE 327 Query: 302 DRINFD 307 D +N Sbjct: 328 DVLNQK 333 >gi|220905099|ref|YP_002480411.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869398|gb|ACL49733.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 326 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 30/297 (10%), Positives = 86/297 (28%), Gaps = 10/297 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 R+ + + + + + V+++ S Sbjct: 32 DSGIVAFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNSVRKRVELNPISID 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + S + + N + + LV L+E++ G + ++ R Sbjct: 86 MTKFGEFMRSLPVPTSINIFKMDPLRGNAIMVVDSRLVFALVESVFGGAGSQP-KVEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E+ + + + + + + L + ++ V I Sbjct: 145 FTRIEQAVVDKIVKIALDNMEESWRPVHDVKLELVR--SEINPQFAAIVPPSDVVVVITF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + ++ S ++ +P T+ S Q + + + + V + Sbjct: 203 EVELDTALGSMIICLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLMETPVELKVC 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 T ++ +++G ++ E+ + G Y G + + +I Sbjct: 263 FGKTTITGNQLLRMQVGDILVLDKDEEDMLDCTVAGVCKYQGIAGTIKAMKSFQIIK 319 >gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] Length = 331 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 107/309 (34%), Gaps = 13/309 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + + P + K + + Y + + ++ +V + Sbjct: 30 EEEKQKVKPYDFRSPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRTNVKVKVE 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S Q + IHS V + + S + + V +++ LLG + + ++ Sbjct: 84 SVQQITYEEFIHSVPNPTVLTIFKMPPLSGSVLFEVNPQFVFQIIDLLLGGNGKGKYKV- 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 + + ++K + K A + + L +E N N+ V Sbjct: 143 -KEFTDIDKNIIKVVNAGLISNLKLAWEDVMPIETEVEGLET--NPALNQTLAPNDPVAL 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240 I ++ + N ++ + IP ++ K Q+ E+ + + + ++V Sbjct: 200 ITFSVEMGNSSTFINICIPYLSIEKVLDKLVVQYWFQDSDEDILNESREKLRNRLDIVDV 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T+++ + L +G V+ + + L K Y + G + KN + I Sbjct: 260 ELTAILGTVDVTVQEFLNLNVGDVLTLKEKTTSPVKLMVEDKVYYYGKPGVIDKNMGVEI 319 Query: 301 TDRINFDQK 309 D ++ D + Sbjct: 320 LDILDKDVE 328 >gi|289578422|ref|YP_003477049.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus Ab9] gi|297544698|ref|YP_003677000.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528135|gb|ADD02487.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus Ab9] gi|296842473|gb|ADH60989.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 332 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 92/285 (32%), Gaps = 8/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L + V+++ S + +S + Sbjct: 50 SKEQLRTLQMIFENLTRSLTSFLSGYLRTVVNVTVISVDQLTYYEFSNSLNNPVFIAIID 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + F + +NN +L+ +LG + +L +R + +E L + + Q+ + Sbjct: 110 AAPLEGPFLLEFNNNTTYAILDRILGGIGK--GELVDRDYTEIEISLLTKIVKQMLPLFK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + +P+L + NE V +++ I +P TL Sbjct: 168 EPWGNIVDINPSLVRVET--NSQFAQIISPNETVALCTLSLKINETEGMMNFCMPHLTLE 225 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + + K + + + ++ T+K+ + +IG + Sbjct: 226 PIVPKLTTKFWFSSLKKEGRVS-PELIKSKISKTYIPLTAQLGSTTITVKEFLNFEIGDI 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I K + + + G Y+++IT+ I + Sbjct: 285 ILLDKNFKDPVDIIIDKNVKFRGIPGIRNNKYSVKITEVIYKGDE 329 >gi|209884529|ref|YP_002288386.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans OM5] gi|209872725|gb|ACI92521.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans OM5] Length = 398 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 4/300 (1%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + + + + + + + +V++S Sbjct: 78 DSEVHLEDHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRIT 137 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNR 125 S +F+ ++S V + W + ++L+ ++++ LLG +T ++ R Sbjct: 138 SVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRGQTSLRIEGR 197 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 +T+E L KR + + A Q + ++ + + Sbjct: 198 PYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFTIDRLET--NPRFAAISRPANAAILVR 255 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + + +E+ + L++P T+ + L + + A + Q + +D Sbjct: 256 LRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMGEKFGRDPIWEGHLATEIAQAELYVDA 315 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + LK +++L++G +P R + ++ +GRVG IR++ + Sbjct: 316 VLYEAEIPLKQLMSLQVGDTLPLDIRPDALVSVRCGDVKLSEGRMGRVGDRVAIRVSKPL 375 >gi|163794148|ref|ZP_02188121.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199] gi|159180762|gb|EDP65281.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199] Length = 341 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 103/302 (34%), Gaps = 4/302 (1%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + + + + + + + +V++S + Sbjct: 41 EAGDGDGDTSGIHAIVNSALVSYERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDNIT 100 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNR 125 S +F ++S + S W + + + L+ ++++ LLG ++ R Sbjct: 101 SIRFGDYLNSIPLPAMLSVFKAEEWDNFGLLVVDSALIYSIVDVLLGGRRGTAAMRIEGR 160 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 +T+E+ L +R + + + L+ + + + T Sbjct: 161 PYTTIERNLVERMVTVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATIARPANAAVLAR 218 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + + +E+ L++P TL + L + + A + + +V +D Sbjct: 219 LRIDMEDRGGRLELMLPYATLEPVRELLLQMFMGEKFGRDSIWETHLANELWNTDVELDA 278 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ L DV+ LK G I + + ++S ++GR + +RI++R+ Sbjct: 279 VLDEIVMPLHDVLNLKPGSRILLNAMPNSTIDMRCGNVSLFSGKMGRKNGSIAVRISNRL 338 Query: 305 NF 306 Sbjct: 339 RK 340 >gi|83594172|ref|YP_427924.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC 11170] gi|83577086|gb|ABC23637.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC 11170] Length = 384 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 107/297 (36%), Gaps = 4/297 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + QS +F Sbjct: 89 DKSGIQAIISTALVSYERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDNIQSYRFGDY 148 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S + S W + + ++++ ++++ LLG ++ R +T+E+ Sbjct: 149 LNSIPLPAMLSVFKAEEWDNYGLLTIDSSMIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 208 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R + + A L+ + + + T + + + +E+ Sbjct: 209 NLVERLVHVVLADLSAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMED 266 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 ++IP TL + L + + A + + V +D ++ Sbjct: 267 RGGRLDMLIPYATLEPVRELLLQMFMGEKFGRDSIWETHLAEEMWSTEVQMDAILDEVYM 326 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L ++++++G I F + L ++ ++GR G+N IR+ + N + Sbjct: 327 PLNKILSMEVGSQILFNATPDSTVQLRCGDVPMFDGKMGRKGQNIAIRVDSKHNRAK 383 >gi|89895728|ref|YP_519215.1| hypothetical protein DSY2982 [Desulfitobacterium hafniense Y51] gi|89335176|dbj|BAE84771.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 338 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 103/285 (36%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K ++ Y + L + ++ +S + + I S + S + Sbjct: 55 SKDQIHSLQNIYENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYT 114 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L+ + S L +++ LLG + + NR L+ +E+ + Q+ ++ Sbjct: 115 LNPLEGTLLMEMSPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIG 172 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P E + NE + + + + + + + +P L Sbjct: 173 EAWSEVIPNEP--EYIVLETNPQFTQIVAPNEMIILVTLEVQVGEMVGMVNMCLPYLVLE 230 Query: 208 KTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + +++ S++ ++ RK V++ T + + ++D++ L G V Sbjct: 231 PVLDKLSTLFLFSTQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDV 290 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 IP + K + + G G++ ++IT+ + + Sbjct: 291 IPLMQNVKEALPVYVGNFRKFKGIPGLHGEHLAVQITEIVEEGRD 335 >gi|144897829|emb|CAM74693.1| Flagellar motor switch protein fliM [Magnetospirillum gryphiswaldense MSR-1] Length = 382 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 103/281 (36%), Gaps = 4/281 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + + + + +V++S + S +F ++S + + Sbjct: 104 SYERLPMLEVVFDRLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFK 163 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 W + + ++L+ ++++ LLG ++ R +T+E+ L +R + + + L Sbjct: 164 AEEWDNYGLLTVDSSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDL 223 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + + + + T + + + +E+ L++P TL Sbjct: 224 SAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMEDRGGRLELLLPYATL 281 Query: 207 LKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L + + A + + V ++ ++ + L+DV+ K+G I Sbjct: 282 EPVRELLLQMFMGEKFGRDSIWETHLAEELWLTEVQMEAVLDEQVMGLRDVLNWKVGSKI 341 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + + L ++ +GR G + IR+ D+I Sbjct: 342 LLNAQPNSPIDLRCGDVSMFRGRMGRKGPHIAIRVDDKIKG 382 >gi|302338090|ref|YP_003803296.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM 11293] gi|301635275|gb|ADK80702.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM 11293] Length = 341 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 92/280 (32%), Gaps = 8/280 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + S + + + ++ V + S + I S + Sbjct: 48 SKEQIRTVSIMHETFARLTTTALSAQLRSMVHVHVASVDQLTYEEFIRSIPNPTTLGIIN 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + ++++ L+G E NR L+ +E+ + + I +I L Sbjct: 108 MDPLKGSAVLEIDPAITFSVIDRLMGGQGE--GSKVNRDLTDIEQTVMEGIIVRILGNLR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P L + E V + + + V IP T+ Sbjct: 166 EAWSQVIDLRPRLGQIET--NPQFAQIVPPTEMVVLVTLETKVGEVEGMMNFCIPYLTIE 223 Query: 208 KTTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + + + ++ + + + + I T++DV++L+ G V Sbjct: 224 PIISKLSAQYMYSSVRSGATTENLNILKDRLSTVAIPVVAEIGEMNLTVRDVLSLRAGDV 283 Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 I R + ++ + C G VG ++I R Sbjct: 284 IRLPDVRVGDPMTIKIGNRKKFECRPGLVGNKVAVQIVHR 323 >gi|307546956|ref|YP_003899435.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581] gi|307218980|emb|CBV44250.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581] Length = 347 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 96/307 (31%), Gaps = 10/307 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 P P R+ + + + + + DI+ Sbjct: 29 GGSAPKVRPFDPASQHRII------RERLHTLDIINERFARHFRMGLFNLIRRSADITVD 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S + +S + + ++ + I NLV +++NL G + + Sbjct: 83 SVRYQSYSEFSRNVPVPTNINMIAMKPLKGSALIVFPPNLVFMVVDNLFGGDGRFLTKSE 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ +R + + + + + N NE V Sbjct: 143 GREFTNTEQRIIQRMLRLAIEAYSDSWRSVYPLEISFLRSE-MQAKFANITNSPNEIVVN 201 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 N N+ + N+ASSF + +P + + ++ + ++Q A + V + Sbjct: 202 TNFNLEVGNLASSFQICMPYSMIEPLRDLLINPLSDGHQDQDSTWTRRMAGEIRHSTVEL 261 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + DV L++G ++P +G + CE G +R+ Sbjct: 262 VADFADLPSRIADVTALEVGDILPLELP--ETVTAKVDGVPVMECEYGSQHGQRALRVLR 319 Query: 303 RINFDQK 309 + Sbjct: 320 LFDHAAD 326 >gi|56964023|ref|YP_175754.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16] gi|56910266|dbj|BAD64793.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16] Length = 329 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 96/307 (31%), Gaps = 13/307 (4%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 K R K + S + Y + L K+ V I S Sbjct: 32 SEKKVRVYDFKRALRF------SKDQIRNLSRIHENYARLLTTNLSAKLRSLVQIQVASV 85 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + S + + I + N+ + + +LG + ++ N Sbjct: 86 EQVPYEEYVRSIPTMTFLNVIEPIPLNGRVLIEINPNIAYAMFDRVLGGHGMSFNKIDN- 144 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 L+ +E K+ + A + +T E P E+ NE V I+ Sbjct: 145 -LTEIETKILSGLFESMLASFAEAWTTVIEMEPITENIEV--NPHFLQLVSPNETVVVIS 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242 ++ +I N + +P L + Q + S + ++ Q + + Sbjct: 202 LSTSIANTTGLMTICLPHVVLEEILPKLTSHHWFQEQRGALSTEDQALLNKQVRQTTLEV 261 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T+++ + L G V+ + G++ +S + G +++TD Sbjct: 262 AAELGRSTITIEEFLRLGKGDVVALNQLIDEPLDVLVGGEKKFSGQPGVKRDRMALQVTD 321 Query: 303 RINFDQK 309 + Sbjct: 322 VLGGTDD 328 >gi|290475711|ref|YP_003468600.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004] gi|289175033|emb|CBJ81836.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus bovienii SS-2004] Length = 335 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 36/310 (11%), Positives = 85/310 (27%), Gaps = 10/310 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S P P R+ + + + + + DI+ + Sbjct: 30 SGESEIRPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L +LV ++NL G ++ Sbjct: 84 IKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFEPSLVYIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + + N N+ V T Sbjct: 144 REFTYTEQRVINRMLKLALDAYRDAWDSIFKIEVEYVRSE-MQVKFTNITTSPNDIVVTT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243 + I + F + IP + + + + ++ + + Sbjct: 203 PFQVEIGALCGEFNICIPFAMIEPLRERLTNPPVENVRQEEGQWRESLVKQVQHSELELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 263 ANFVDIPLRLSKILQLRRGDVLPIERP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHL 320 Query: 304 INFDQKSLKN 313 IN +L Sbjct: 321 INPVLNALDE 330 >gi|303325483|ref|ZP_07355926.1| flagellar motor switch protein FliM [Desulfovibrio sp. 3_1_syn3] gi|302863399|gb|EFL86330.1| flagellar motor switch protein FliM [Desulfovibrio sp. 3_1_syn3] Length = 326 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 32/297 (10%), Positives = 84/297 (28%), Gaps = 10/297 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 R+ + + + + + V+++ S Sbjct: 32 DSGIVAFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAVRKRVELNPISID 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + S + + N + + LV L+EN+ G + ++ R Sbjct: 86 MTKFGEFMRSLPVPTSINIFKMDPLRGNAIMVVDSRLVFALVENVFGGAGTQP-KIEGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E+ + + + + + + L + ++ V I Sbjct: 145 FTRIEQAVVDKIVKIALDNMEESWRPVHDVKLELVR--SEINPQFAAIVPPSDVVVVITF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + ++ S ++ +P T+ S Q + + + + V + Sbjct: 203 EVELDTALGSMIICLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLLETPVELKVH 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 T ++ +++G V+ + + G Y G V +I Sbjct: 263 YGNTTITGNQLLRMQVGDVLVLDTDVEDLLTCTVAGVGKYQGIAGTVKAMKAFQIIK 319 >gi|288958672|ref|YP_003449013.1| flagellar motor switch protein [Azospirillum sp. B510] gi|288910980|dbj|BAI72469.1| flagellar motor switch protein [Azospirillum sp. B510] Length = 357 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 99/302 (32%), Gaps = 4/302 (1%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + L + + + + + +V++S S Sbjct: 54 GAGDGDNSGIMALVNSALVNYERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDQISSV 113 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSL 127 +F ++S + S W + + + L+ ++++ LLG ++ R Sbjct: 114 RFGDYLNSIPLPAMLSVFKAEEWDNYGLMVVDSALIYSIVDVLLGGRRGTAAMRIEGRPY 173 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 +T+E+ L +R + + + L+ + + + T + + Sbjct: 174 TTIERNLVERMVHVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATIARPANAAVLVKLR 231 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + +E+ L+IP TL + L + + A + +V++ + Sbjct: 232 IDMEDRGGRLELMIPYATLEPVRELLLQMFMGEKFGRDSIWETHLASELMVTDVDLSAVL 291 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + TL DV+ ++G I L ++ +GR G + +R+ + Sbjct: 292 DEVTMTLHDVLNWRVGTRILLNATPDGAIELRCGDVSMFQGRMGRKGGHIAVRLEKELPK 351 Query: 307 DQ 308 + Sbjct: 352 QE 353 >gi|183220997|ref|YP_001838993.1| flagellar motor switch protein FliM [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779419|gb|ABZ97717.1| Flagellar motor switch protein FliM [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 341 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 102/314 (32%), Gaps = 17/314 (5%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 K + K + + ++ + ++ V + S Sbjct: 32 EQKKVKIYDFKRPDKF------SKDQIRTLQMMHEIFARLATTGLSAQLRALVVVHVASV 85 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + I S + ++ + + ++ T+++ L G E+ NR Sbjct: 86 DQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGESSKV--NR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 LS +E + + I +I L + ST + P L + + N+ V I Sbjct: 144 ELSDIELSVMEGIIVRILGNLRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLIT 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242 + + V L IP T+ + + + ++ + Q+ + + Sbjct: 202 LETKVGEVERMTNLCIPYITIEPIINKLSAQYWYSSIRKGEVDENRAVIQERLDQVKIPL 261 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + +L D++ L +G VI KT ++ + + GRVG I+I Sbjct: 262 ISEVGSVDISLNDLMNLHVGDVIKLENTPIKTDLMVKVGDRSKFKATPGRVGNRLAIQIG 321 Query: 302 DRINFDQKSLKNFL 315 D I + L Sbjct: 322 DSI---EDIPDELL 332 >gi|219670152|ref|YP_002460587.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense DCB-2] gi|219540412|gb|ACL22151.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense DCB-2] Length = 331 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 103/285 (36%), Gaps = 7/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K ++ Y + L + ++ +S + + I S + S + Sbjct: 48 SKDQIHSLQNIYENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYT 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L+ + S L +++ LLG + + NR L+ +E+ + Q+ ++ Sbjct: 108 LNPLEGTLLMEMSPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIG 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P E + NE + + + + + + + +P L Sbjct: 166 EAWSEVISNEP--EYIVLETNPQFTQIVAPNEMIILVTLEVQVGEMVGMVNMCLPYLVLE 223 Query: 208 KTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + +++ S++ ++ RK V++ T + + ++D++ L G V Sbjct: 224 PVLDKLSTLFLFSTQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 IP + K + + G G++ ++IT+ + + Sbjct: 284 IPLMQNVKEALPVYVGNFRKFKGIPGLHGEHLAVQITEIVEEGRD 328 >gi|217077700|ref|YP_002335418.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B] gi|217037555|gb|ACJ76077.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B] Length = 329 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 101/292 (34%), Gaps = 7/292 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K E+ L + + L F ++ V + + + S + Sbjct: 40 DFLRPRKFSKEQERTLQMLHENFARSLSTYFSGRLRSFVAVDLVGLDQMTYDEFVKSIRN 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + S + + + + +LE LLG + NR + E ++ ++ + Sbjct: 100 PSYIAVFSAKEFVGSAILDIDLEIFFGVLEILLGGPGMNVE--INRPPTDTEIEVMRKEV 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 I L Q ST +P +E + SNE V I + + I N+ + Sbjct: 158 VNILTNLVQAWSTVYSFTPVIEAIET--NPQFVQIVASNEMVLVITLLLKIGNIEGYINI 215 Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 P + + K + SE+ + + V + + TL D+ Sbjct: 216 CWPSSLVEPIGEKLTTQSWFKTKQKIVSEEDMKALRENLARTIVELSVAVGETNLTLWDI 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + L++G VI ++ + NGK+ + G Y ++I + ++ ++ Sbjct: 276 LNLEVGDVIRLDTFKEDPLKIKLNGKDKFLGVPGVFKGKYAVKIVEVLDEEE 327 >gi|240145492|ref|ZP_04744093.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82] gi|257202307|gb|EEV00592.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82] gi|291536015|emb|CBL09127.1| flagellar motor switch protein FliM [Roseburia intestinalis M50/1] Length = 326 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 97/292 (33%), Gaps = 7/292 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + Y + L + +V + + ++ +S ++ Sbjct: 39 DFARPAKFSKEHLRTLEIIFEHYGRLLSTNLPVYLRKNVQVEVMNSEAVTYSEFSNALSN 98 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + S + + I + NL +++ +LG + + R S +E + +R Sbjct: 99 PVLLGIVNASPLNGSIVIEMAQNLGYVVVDRMLGGKGVPLDKP--RDFSEIELLIIERIF 156 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 +L + E P LE + E + + +N+ I +V + Sbjct: 157 NVAVDLLVEPWENVCELEPRLERIET--NSQFAQIISPTEMIALVTLNVKIGDVEGLLNV 214 Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +P TL + E + + + + I + ++ D Sbjct: 215 CLPYLTLESIMDKLNTKYWYSSLQEKDEQQYTETIEALISKAPMPIKAVLGNSSISVNDF 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + L++G +I + + + ++ G G +Y +RIT I +Q Sbjct: 275 LGLQVGDIIRLDTKVDQELSVFVGSIKKFTALPGETGDDYAVRITSVIREEQ 326 >gi|183598647|ref|ZP_02960140.1| hypothetical protein PROSTU_02052 [Providencia stuartii ATCC 25827] gi|188020831|gb|EDU58871.1| hypothetical protein PROSTU_02052 [Providencia stuartii ATCC 25827] Length = 335 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 36/307 (11%), Positives = 87/307 (28%), Gaps = 10/307 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + P P R+ + + + + + DI+ + Sbjct: 33 EQVRPYDPNTQRRVIRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIKI 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + + LV ++NL G + + Sbjct: 87 EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ R + + + + N N+ V T Sbjct: 147 TNTEQRIIHRMLKLALSAYRDAWRPIADIDVEYVRSE-MQVKFTNITTSPNDIVVTTPFL 205 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTRI 246 + I N F + IP + ++ + ++E + + + + + Sbjct: 206 VEIGNTIGEFSICIPIAMIEPLRERLINPPVEQGHQENEAWVSNLVTQVKRSELELVANF 265 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ L+ G VIP I+S +G + + + G Y +R+ IN Sbjct: 266 VDIPLRISRLLQLQKGDVIPIEKP--DRLIVSVDGVPVLTSQYGTQNGQYALRVEHLINP 323 Query: 307 DQKSLKN 313 +L Sbjct: 324 VLNTLDE 330 >gi|310659031|ref|YP_003936752.1| flim [Clostridium sticklandii DSM 519] gi|308825809|emb|CBH21847.1| FliM [Clostridium sticklandii] Length = 332 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 95/297 (31%), Gaps = 7/297 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K K + + + L + I S + + +S Sbjct: 40 DFKSPKKLAKDQLKTLHMIHENFSRILNTYLSGYLRSITQIDVISVEELSYYEFNNSISN 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + S SN L T+++ +LG + + + +R + +E + + + Sbjct: 100 PALISVIDFMPLPGQIIFEMSNRLAFTMIDRILGGNGKY--ESESRPFTEIETTILNKLM 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 A +S +L + E P L+ + SNE V I + + ++ + Sbjct: 158 ANVSRLLIEPWENVIELDPELDKIET--NSQFAQIVSSNETVALITLRANVGDIEGLMNI 215 Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +P L + +ED + + N++I+ + T+++ Sbjct: 216 CMPHIVLEPILPNLSTKFWFSTVKKELNEDDKGYLETRVKRANIDINAVVGDTYITVEEF 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + L+ G VI + L GK Y G + N +IT + + Sbjct: 276 IYLQEGDVIKLSRKIDEDLELHVEGKTKYLGRPGTLKNNMAFKITKVVEKGDEDYDE 332 >gi|288573016|ref|ZP_06391373.1| flagellar motor switch protein FliM [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568757|gb|EFC90314.1| flagellar motor switch protein FliM [Dethiosulfovibrio peptidovorans DSM 11002] Length = 334 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 95/306 (31%), Gaps = 13/306 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + S KN + K + + + + L + V Sbjct: 28 ISQASAEKNVKGYDFRRPDKF------SKDQLRAIQMIHESFSRQLTTSLSTMVRSIVTC 81 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + S + V + N + + NLV +++ LLG E Sbjct: 82 EVASVDQVAYEEFVRSMVQPTVMGVLEMYPLEGNAVVEMNPNLVFAIIDRLLGGKGEVFG 141 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R L+ +E + +R ++ +L ST + + + Sbjct: 142 KP--RDLTDIESTVIERVFMRMLELLEDSWSTVIDVRFRFD--SMESNPFFVQICPGTDM 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 V + + ++I +V L IP + + +N+ +D Sbjct: 198 VLLVTLRVSIGDVEGMVSLCIPYFVMEPVMDKLSSQIWFASTGKNKDQDHRGFLTASLGT 257 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + V + + +L DV+ L++G VI + + ++ G V Y+ Sbjct: 258 VKVPVHLELGDTVLSLFDVMRLRVGDVIRLDSMLDDPVRVRVGSRIKFTGRPGTVDGRYS 317 Query: 298 IRITDR 303 + + + Sbjct: 318 VEVLEV 323 >gi|24214781|ref|NP_712262.1| flagellar motor switch protein FliM [Leptospira interrogans serovar Lai str. 56601] gi|45657699|ref|YP_001785.1| flagellar motor switch protein FliM [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195784|gb|AAN49280.1| flagellar motor switch protein FliM [Leptospira interrogans serovar Lai str. 56601] gi|45600939|gb|AAS70422.1| FliM [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 341 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 46/315 (14%), Positives = 103/315 (32%), Gaps = 17/315 (5%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S K + K + + + + ++ V + S Sbjct: 31 SEQKKVKIYDFKRPDKF------SKDQIRTLQMMHETFARLATTGLSAQLRALVSVHVAS 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + I S + ++ + + ++ T+++ L G E + Sbjct: 85 VDQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGEQAK--IS 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E + + I +I + + ST + P L + + N+ V I Sbjct: 143 RELSEIEMSVMEGIIVRILGNMRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLI 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVN 241 + I V L IP T+ + + + ++ + Q+ + Sbjct: 201 TLETKIGEVEGMTNLCIPYITIEPIINKLSAQYWYSSIRKGELDENRAVIQERLDQVAIP 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + ++ D + L IG V+ + ++ I+ ++ + C GRVG I+I Sbjct: 261 LIAEVGSVDVSINDFMNLSIGDVVKLENTSTRSEMIVKVGERKKFKCLPGRVGSRLAIQI 320 Query: 301 TDRINFDQKSLKNFL 315 +R+ + L Sbjct: 321 GERV---EDIPDELL 332 >gi|209964207|ref|YP_002297122.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] gi|7025351|gb|AAF35843.1|AF220001_1 polar motor switch protein FpiM [Rhodospirillum centenum] gi|209957673|gb|ACI98309.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] Length = 362 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 97/281 (34%), Gaps = 4/281 (1%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 + + + + + +V++S S +F ++S + + Sbjct: 81 ERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLAVFKAE 140 Query: 90 SWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 W + + + L+ ++++ LLG ++ R +T+E+ L +R + + + L+ Sbjct: 141 EWDNYGLMVIDSALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSA 200 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + + + T + + + +E+ L+IP TL Sbjct: 201 AFDPLSPVTFRFDRLET--NPRFATIARQANAAVLVKLRIDMEDRGGRLELLIPYATLEP 258 Query: 209 TTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + L + + A + + +V++ ++ +L DV+ +IG + Sbjct: 259 VRELLLQMFMGEKFGRDSIWETHLASELWMTDVHLSAVLDEITLSLYDVLNWRIGSRVLL 318 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L ++ +GR G N +RI + Sbjct: 319 NVAPDDTIELRCGDVPMFLGRMGRKGGNIAVRIDREAPKPE 359 >gi|257457606|ref|ZP_05622773.1| flagellar motor switch protein FliM [Treponema vincentii ATCC 35580] gi|257444992|gb|EEV20068.1| flagellar motor switch protein FliM [Treponema vincentii ATCC 35580] Length = 344 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 41/321 (12%), Positives = 108/321 (33%), Gaps = 12/321 (3%) Query: 2 RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58 G + + P++ I + K + S + + + ++ Sbjct: 19 SGDTEAEEFRPVNDTRKIKIYDFKRPDKFSKEQMRTVSIMHETFARLTTTALSAQLRSMA 78 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 + S + I S + ++ N + ++ ++++ L G + ++ Sbjct: 79 HVHVASVDQLTYEEFIRSIPTPTTLAVINMDPLKGNAVLEIDPSVTFSIIDRLFGGTGQS 138 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 + R L+ +E + + I +I A + + + + P L + + Sbjct: 139 --TMVQRELTDIEASVMEGVIVRILANMREAWTQVIDLRPRLGQIET--NPQFAQIVPPS 194 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235 E V + + + IP T+ + + + + K Sbjct: 195 EMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGVLKEKL 254 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294 +++++ + K ++DV+ L+ G V+ R LS ++ + C+ G VG Sbjct: 255 STVDMDVVAEVGSLKLPVRDVLNLRAGDVVRLTDTRVGHPFTLSVGSRKKFWCQPGVVGN 314 Query: 295 NYTIRITDRINF-DQKSLKNF 314 ++I ++I +Q + Sbjct: 315 KVAVQILEKIEDINQDEFEEL 335 >gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium xylanolyticum LX-11] gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium xylanolyticum LX-11] Length = 329 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 46/310 (14%), Positives = 96/310 (30%), Gaps = 11/310 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + P + K + + + + V + Sbjct: 27 IEENQQEAKVKPYDFRRPNKF------SKEQLRTLQMIFENMSRSFTTFLSGYLRTLVQV 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S S + + +S + + C+NN T+++ +LG + Sbjct: 81 SIVSVEQITYYEFSNSLTNPVFIAVIDAKPLEGPIILECNNNTTFTIIDKILGGIGAS-- 138 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R + +E L R Q+ ++ S E +P + + NE Sbjct: 139 ETVQRDYTEIEMGLLTRITTQLLPLIKDAWSNVIELNPEITRIET--NSQFTQVISPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL-IDPFARKTYQLN 239 V M++ I + +P T++ + + S + + I K Sbjct: 197 VALCTMSLKINDNEGLINFCLPHITIVPILPLLTTKTWFSNAEKQTYDIGIIKDKISNTY 256 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + I K T++D+++ G VI R K + N + + G K Y ++ Sbjct: 257 VPLKVVIGTSKITVRDLLSFDKGDVIEINKRYKDPIEVKINDETKFLGVPGIRNKKYCVQ 316 Query: 300 ITDRINFDQK 309 IT+ + Sbjct: 317 ITEICSEGDD 326 >gi|150388448|ref|YP_001318497.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] gi|149948310|gb|ABR46838.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] Length = 331 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 94/294 (31%), Gaps = 7/294 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + + L + V + + + +S Sbjct: 40 DFKSPKKLAKDQLRTLQIIHDNFSGMLNTFLAGYLRTYVQAEVLTVEELSYYEFSNSVVN 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 V S + + + S ++ TL+E +LG + ++ R + +E L K + Sbjct: 100 PAVLSIINFTPLEGQIIVDISPSISFTLIERILGGMGKETEEI--RPFTEIETTLIKNLM 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 Q+ ++ E P L+ + N+ V I +N+ I +V + Sbjct: 158 RQVINLMIDPWENVIELQPKLDKIET--NSQFAQIVSPNDTVALITLNLKIGDVEGMMNI 215 Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 IP + N S+ +E ++ + V+I ++ T+KD Sbjct: 216 CIPHIVIEPILDKLSTKLWFSNSSKPVTERDKKALQKRVEKSAVDITAQLGSTCVTVKDF 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + L++G VI + + K Y G +++T + Sbjct: 276 LELQMGDVIMLDNPVDKELQILVGDKIRYRGLPGTSKNKLAVKVTGIDQKGDEI 329 >gi|197285496|ref|YP_002151368.1| flagellar motor switch protein FliM [Proteus mirabilis HI4320] gi|227355987|ref|ZP_03840379.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] gi|194682983|emb|CAR43414.1| flagellar motor switch protein [Proteus mirabilis HI4320] gi|227163975|gb|EEI48877.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] Length = 343 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 88/308 (28%), Gaps = 10/308 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P P R+ + + + + + DI+ + Sbjct: 40 EPDIQPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIK 93 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L NLV ++NL G + R Sbjct: 94 IHPYHDFARNLPVPTNLNLVHLKPLRGTALFTFEPNLVYIAVDNLFGGDGRFPIPVEGRE 153 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ + + + + + N N+ V T Sbjct: 154 FTNTEQRIINKMLKLALDAYRDAWDSIFKIQVEYVRSE-MQVKFTNITSSPNDIVVTTPF 212 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245 + I ++ F + IP + ++ ++ + +D + + + Sbjct: 213 QVEIGSMVGEFSICIPFAMIEPLRERLINPPIENLRQEDSVWLDSLVNQVKHSELELVAN 272 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L V+TLK G V+P I +G + + + G V Y +R+ IN Sbjct: 273 FTDIPLRLSKVLTLKKGDVLPIDKP--ERLIAHVDGVPVLTSQYGTVHGQYALRVEHLIN 330 Query: 306 FDQKSLKN 313 +L Sbjct: 331 PVLNALDE 338 >gi|320538201|ref|ZP_08038096.1| flagellar motor switch protein FliM [Treponema phagedenis F0421] gi|320145018|gb|EFW36739.1| flagellar motor switch protein FliM [Treponema phagedenis F0421] Length = 344 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 99/282 (35%), Gaps = 8/282 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + S + + + ++ V + S + I S + + Sbjct: 48 SKEQMRTLSLMHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPTTIAVIN 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + ++ ++++ L G + + R L+ +E + + I +I A + Sbjct: 108 MDPLKGNAILEIDPSVTFSIIDRLFGGTGQGTKV--QRDLTDIENSVMEGVIVRILANVR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P L + +E V + + + + IP T+ Sbjct: 166 EAWTQVIDLRPRLGQIET--NPQFTQIVPPSEMVVLVTLETKVGDEEGMMNFCIPYITIE 223 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + + + K +++++ + +++DV++L+IG V Sbjct: 224 PIISKLSSQFWFSSVRRSSTTQYMGVLKDKLSTVDMDVVAEVGFLNLSVRDVLSLRIGDV 283 Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I LS ++ + C+ G VGK ++I ++I Sbjct: 284 IRLKDTHVGDPFTLSVGNRKKFLCQPGVVGKKVAVQILNKIE 325 >gi|126665008|ref|ZP_01735991.1| flagellar motor switch protein M [Marinobacter sp. ELB17] gi|126630378|gb|EBA00993.1| flagellar motor switch protein M [Marinobacter sp. ELB17] Length = 331 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 93/296 (31%), Gaps = 12/296 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 R+ + + ++ + D+S + Q Sbjct: 32 GVKSYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRTADVSTSGVQIM 85 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + + LV L++N G ++ R + Sbjct: 86 KFGEYVHTLYVPTSLNLCKIRPLRGTSLFVLDAKLVFKLVDNFFGGQGR-HAKIEGREFT 144 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ + + Q+ + + T + + E +E V ++ Sbjct: 145 PTENRIVQMMLNQVFHDMQEAWQTVLKVN--FEYLSSEVNPSMANIVSPSEVVVVSTFHI 202 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ +P + + + Q+ ++ E + ++V +++ I Sbjct: 203 ELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDTDERWVSALQEDIKTVSVAVNSTIC 262 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + +L++V K G +IP ++ANG IY+ LG +RI R Sbjct: 263 RRHISLREVAKFKAGDIIPIEMA--EHLTVTANGIPIYTATLGTRDDKLALRIHGR 316 >gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis HTE831] gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] Length = 330 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 100/287 (34%), Gaps = 9/287 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + S + Y + L F ++ V+IS TS + I S + + + Sbjct: 48 SKDQIRSISRIHENYARMLTTFFATQLRSYVNISVTSVDQVPYEEFIRSIPKKTILNLYG 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + N+ LL+ LLG TI + N L+ +EK L + + L Sbjct: 108 MEPLDGNLIMEINPNIAYALLDRLLGGKGSTITKDGN--LTEIEKTLFMQMFEKAEDALR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 S+ E P LE + + NE V +++ I + IP L Sbjct: 166 DAWSSVVEIEPVLE--EFEENPQFMQKIAPNETVVVVSLTTVIGETTGMINICIPHVILE 223 Query: 208 KTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + N+ E + + V + + ++ D + + G +I Sbjct: 224 PIIPKLSVHYWMQSNSNKDEQAYGKMQQNLKKTEVELKAILGATTISIHDFLNFQQGDII 283 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI---NFDQK 309 +LS + + + G+ +++I + I N D + Sbjct: 284 SLDQPIDAPLLLSIYDQPKFFAQPGKFKNKMSVQILEEIKGVNEDDE 330 >gi|27380936|ref|NP_772465.1| flagellar motor switch protein FliM [Bradyrhizobium japonicum USDA 110] gi|27354102|dbj|BAC51090.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] Length = 400 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 102/295 (34%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + L + +V++S S +F Sbjct: 87 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLLTTSLRNFTSDNVEVSLDRITSVRFGDY 146 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V S W + +NL+ ++++ LLG + ++ R +T+E Sbjct: 147 MNSIPLPAVLSVFKAEEWDNFGMATVDSNLIYSMIDVLLGGRRGTSQLRIEGRPYTTIET 206 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 +L KR + + A Q + ++ + + + + +E+ Sbjct: 207 ELVKRLVEVVLADAEQAFRPLSPVTFTIDRLET--NPRFAAISRPANAAILVRLRIDMED 264 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + L + + FA + Q +++D + Sbjct: 265 RGGNIELLLPYATIEPIRGVLLQMFMGEKFGRDPVWEGHFATEIGQAEISVDAVLYEADI 324 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK ++ LK+G +P R + I +GRVG IR+T + Sbjct: 325 PLKQLMRLKVGDTLPLDMRADANVTVRCGDVTITEGRMGRVGDRVAIRVTKPLRK 379 >gi|283850275|ref|ZP_06367564.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B] gi|283574301|gb|EFC22272.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B] Length = 326 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 95/306 (31%), Gaps = 7/306 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTI---EKISSSLGYLYKKFLPKIFKEKMDLD 57 + G I T L + + I + + + + M Sbjct: 17 LSGGEIEAETDILEDDSGVVVFDLSNQDRIIRGRMPVLEIINDRFARLASNAMANAMRKR 76 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 D++ S KF + S + L N + + LV ++E+ G + Sbjct: 77 ADVNPISIDMSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVDSRLVFAMVESFFGGAGS 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 ++ R + +E+ + R + + + E ++E + Sbjct: 137 QP-KIEGRDFTPIEQAIINRVVRIALENMEESWQPVHEV--HIELVRSEVNPQFAAIVPP 193 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTY 236 ++ V + + +EN S ++ +P T+ S Q + I F + Sbjct: 194 SDVVVVVTFEVELENAIGSLIVCLPYATIEPIRSKLYASFQTERLEVDHAWIARFKERLM 253 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V + R + T + +++LK G +I + G + G V N Sbjct: 254 ETPVELLVRFGRSQITGRQLLSLKPGDIIMLDNDVDALLDAEIQGVRKFRGIPGLVKSNK 313 Query: 297 TIRITD 302 +I Sbjct: 314 AFQIVK 319 >gi|218778863|ref|YP_002430181.1| flagellar motor switch protein FliM [Desulfatibacillum alkenivorans AK-01] gi|218760247|gb|ACL02713.1| Flagellar motor switch protein FliM [Desulfatibacillum alkenivorans AK-01] Length = 325 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 78/296 (26%), Gaps = 9/296 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + M DIS KFS Sbjct: 38 YDFANQDRVIRG------RMPTLEVVNKRLARMFSSSLSATMRGAADISVRDTNMIKFSE 91 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 S + + + LV L+E G + ++ R + +E Sbjct: 92 FQSSIPVPANIHMFKMEPLRGHALLVVDTPLVFQLIEYYFGGTPGGALKVEGRDFTRIEN 151 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ ++ + + + P + L + + + + +E Sbjct: 152 QIIRKVVGIFLKDFDDAWAPIFPIKPVYVRSEM--NPQFAVIGLPIDLMIIVRFQVELET 209 Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L IP L Q+ + + ++ V I + Sbjct: 210 TEGGMTLAIPYSMLEPIRDKLYSGFQSDNLEADASWRKRVESQVQEVLVEICVELGTAVI 269 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 T + +++L+ G VI G + + G V + I + RI D Sbjct: 270 TAERLMSLRKGDVISLDQFADEPLTAKIQGVPKIAGKAGVVKGSKAIAVEGRITMD 325 >gi|42528263|ref|NP_973361.1| flagellar motor switch protein FliM [Treponema denticola ATCC 35405] gi|4426948|gb|AAD20622.1| flagellar switch protein FliM [Treponema denticola] gi|41819533|gb|AAS13280.1| flagellar motor switch protein FliM [Treponema denticola ATCC 35405] gi|325474547|gb|EGC77733.1| flagellar switch protein FliM [Treponema denticola F0402] Length = 344 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 35/282 (12%), Positives = 95/282 (33%), Gaps = 8/282 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + ++ + + + + I S + + Sbjct: 48 SKEQMRTVQMMHETFARLTTTSLSAQLRSMAHVHVATVEQLTYEEFIRSIPTPTTLAIIN 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + ++ + ++ ++++ L G + R L+ +E + + I +I A + Sbjct: 108 MDPLRASALLEIDPSVTFSIIDRLFGGKGQGSKV--QRELTEIESSVMEGVIVRILANMR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + +T + P L + + +E V + + + + +P TL Sbjct: 166 EAWTTVVDLRPRLGNIDT--NPQFVQIVTPSEMVLLVTLETKVGEEEGMMNICLPYITLE 223 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + K + V++ + +++DV+ L+ G V Sbjct: 224 PIISKLSTQFWFSSVRRASTGQYAAAIKDKLSTVEVDMVAEVGSLDVSIRDVLNLRAGDV 283 Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + R L+ + +SC+ G GK ++I ++I Sbjct: 284 VRLPNVRVGDPFKLTVGSRPKFSCQPGVKGKKLAVQILEKIE 325 >gi|325109075|ref|YP_004270143.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM 5305] gi|324969343|gb|ADY60121.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM 5305] Length = 368 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 5/293 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + +L + + + +++ S + + S + F+ Sbjct: 54 SKEQMRAFQALHEGFSREFGASLSGMLRSIIEVKLISVDQLTYGEFVFSLENPTCFNLLF 113 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + +++ +++ LLG + +R L+ +E +L R L Sbjct: 114 SDKLNGHLILDLNPSIIYPIVDRLLGGGKSSTQSYPSRPLTEIELRLVSRITKSAITALE 173 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 E + + NE + I+ +++ + L IP T+ Sbjct: 174 NSWINISELQLRVTQIE--SNPQLVQIVPPNEVIVLISFEISMGEMRGIMNLCIPFNTIE 231 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 T S + S VN+ + T +++ L +G V Sbjct: 232 PLTGKLSSDTWSAYTKQQISPQQKAQLEVGIGAAKVNLVAALAETHLTASELMNLDVGDV 291 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 I K + GK +S ++G++ + I+I D++ + + L K Sbjct: 292 ILTERDVKKGLTIFVEGKPTFSADVGQIKGHKAIQIRDKLPKTRDIVDQHLQK 344 >gi|306820127|ref|ZP_07453775.1| flagellar motor switch protein FliM [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551905|gb|EFM39848.1| flagellar motor switch protein FliM [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 332 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 91/293 (31%), Gaps = 7/293 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K K S + Y + L + + +I +S + + +S Sbjct: 40 DFKSPKKLAKDQLKTLSIIHDNYARVLSTYLSGYLRVITEIEVSSVEELSYYEFNNSISN 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + + + S+ L T+++ +LG + NR S +E + + + Sbjct: 100 PAMIAVVNFEPLPGQIILETSSKLAYTMIDRILGGDGLYDEE--NRDFSEIELIILSKLV 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 I ++ E SP LE + NE V I +++ I V + Sbjct: 158 RNIVGYFSEAWENVIELSPYLEKIE--PNSQFAQIVSPNETVALITLSVKIGEVEGLMNI 215 Query: 200 IIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +P L + + E + + I T++D Sbjct: 216 CLPNIVLEPIIQNLSTNFLFSGIKKEFDEKGKKNLESNVKKAKLEAVAIIGDTFITVEDF 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + +++G VI + L GK Y G KN +I I + Sbjct: 276 IFMQVGDVIKLNKKVDEELELKVAGKTKYLGYPGTYKKNMAFKINKVIEKGDE 328 >gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM 2228] Length = 335 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 100/315 (31%), Gaps = 17/315 (5%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + QS K +L K + + + K+ V+ Sbjct: 28 KEQSEEKEVKDYDFRRPDKL------SKEQMRTLQMIHENLSRLFTTTLSTKLRSMVNFE 81 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 S + +S IHS E + + L F + + +++ L G I Sbjct: 82 VASIEQLSYSEFIHSLPEPTIIGISKLEPLEGQFIFEINPEVGFAVIDRLFGGLGNPIDD 141 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + RS + +E+ + KR + + ++ + P L + ++ Sbjct: 142 I--RSFTDIEQVVIKRVMNWLLGDFSEAWENISKLKPKL--LELESNPQFTQIVPDSDMT 197 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQL 238 I ++ I + +P L + E Q+ + I ++ + Sbjct: 198 IIITLSARIGGSEGLMNICLPYIMLEPIVSNLNAQYWFSSTREKQTPEHIAKLRKRLNEA 257 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V +D + + T++D + L+ G V+ + + A L Y +G + I Sbjct: 258 LVEVDAVLGSTEITVEDFLYLQPGDVVRLDKKVEENAELKIGRSRKYEAVVGNKNNHKAI 317 Query: 299 RI----TDRINFDQK 309 +I + + + Sbjct: 318 QIIGVAENLLEESED 332 >gi|283781536|ref|YP_003372291.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068] gi|283439989|gb|ADB18431.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068] Length = 362 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 99/302 (32%), Gaps = 12/302 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + +P R+ K + SL + + + V++ TS Sbjct: 45 TREKVTPYDFKRPERVG------KEQMRALQSLHEGFGRNFGAALSALLRSIVEVKLTSV 98 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + S + F+ N + + +++ +++ LLG + + R Sbjct: 99 DQLTYSEFVFSLENPTCFNLLRAEPLEGNLILDINPSILYPIIDRLLGG-GKEAGPVARR 157 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 L+ +E +L R L +++ + NE V I+ Sbjct: 158 PLTEIELRLVSRITHLFLQELKHAWEGVLPLKLSVDRVE--SNPQLVQIVPPNEVVVLIS 215 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242 +T+ +V L IP ++ + + I +++ Q V + Sbjct: 216 FELTLNDVRGMINLCIPFNSIERIGSKLTSNNWVAYGKGGATPQSIAQISKRLDQSKVEL 275 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T D++ L++G +I +T ++ G + G + + +RI Sbjct: 276 VVTLAETTITTGDMIGLRVGDIITTDKDIRTPLEIAVQGMAKFQASCGALKGHKAVRIEQ 335 Query: 303 RI 304 I Sbjct: 336 SI 337 >gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] Length = 331 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 96/294 (32%), Gaps = 7/294 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + + + L + V + + + +S Sbjct: 40 DFKSPKKLAKDQLRTLQIIHDNFSRMLNTFLAGYLRTYVQADVLTVEELSYYEFSNSVVN 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 V S + + + S ++ TL+E +LG + ++ R + +E L K+ + Sbjct: 100 PAVLSIINFTPLEGQIIVDISPSISFTLIERILGGVGKGTEEV--RPFTEIETTLIKKLM 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 Q+ ++ E P L+ + N+ V + +N+ I +V + Sbjct: 158 RQVINLMVDPWENVIELQPKLDKIET--NSQFAQIVSPNDTVALVTLNLKIGDVEGMMNI 215 Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 IP + N S+ +E ++ + VNI ++ T+KD Sbjct: 216 CIPHIVIEPILDKLSTKLWFSNISKPVTESDKKALQKRVEKSTVNITAQLGGTCVTVKDF 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + L+IG VI + + K Y G +++T + Sbjct: 276 LELQIGDVIMLDNPVNKELQILVGDKIRYRGLPGTSKNKLAVKVTGIDEKGDEI 329 >gi|261855321|ref|YP_003262604.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus c2] gi|261835790|gb|ACX95557.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus c2] Length = 347 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 99/303 (32%), Gaps = 6/303 (1%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + + LT + + L + + + VDIS Sbjct: 25 ATEEGVGDPSEARSYDLTTQERIVRGRLPTLEMLNERFARNFRIRLVSMLRRTVDISIEG 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + K+S H+ + + + LV L++N G ++ Sbjct: 85 VRMMKYSEYSHALYVPTSLTLVHVRPLKGTGLFMMESQLVFKLVDNFFGGFG-MHAKIEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E ++ R + Q + + + + ++ + E V Sbjct: 144 RDFTPTELRVITRVLEQAIDEVQRSWTPVYPVN--IQTVSHEMNPQLANIVSGTEVVVVN 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNID 243 + + +E F +++P + + Q E R+ + ++ + Sbjct: 202 SFRIEVEGGGGKFDIVLPYSMIEPIRDLLDGGMQGDRLEVDERWTQALKRELGRADIELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 ++ + +L D+ +++G V+PF +L+A G +Y +LG N ++RI Sbjct: 262 AQLGEMRMSLADIAHMEVGDVLPFEMP--EQVVLTAQGLPLYQGKLGVHRGNKSVRIQSP 319 Query: 304 INF 306 + Sbjct: 320 VKE 322 >gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] Length = 342 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 93/275 (33%), Gaps = 6/275 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D+S Q KF +HS + + Sbjct: 69 RMPTLEMINERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 128 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q A L + Sbjct: 129 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAW 187 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + + E +E V ++ +++ + +P + Sbjct: 188 HAVLDVN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIR 245 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ +Q E + +NV + + ++ L+D++ ++ G VIP Sbjct: 246 EMLDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEM 305 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E I+ ANG + +LG N +++ + + Sbjct: 306 PED--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 338 >gi|119476310|ref|ZP_01616661.1| flagellar motor switch protein M [marine gamma proteobacterium HTCC2143] gi|119450174|gb|EAW31409.1| flagellar motor switch protein M [marine gamma proteobacterium HTCC2143] Length = 320 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 6/278 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +H+ + L Sbjct: 48 RMPTLEMVNERFSRYTRISLFNLLRRSADVAVGGIQVQKFGEYVHTLFVPTSLNMIKLRP 107 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 I LV L++N G ++ R + E ++ + + + A L + Sbjct: 108 LRGTGLIVLDAKLVFKLVDNYFGGDGR-HAKIEGREFTPTELRVVEMVLQEAFADLKEAW 166 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + +E V ++ ++ + +P + Sbjct: 167 RAVLPVEFEFVNAEV--NPSMANIVSPSEVVVVSTFHIELDGGGGDMHITLPYAMIEPIR 224 Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 S Q ++ + I VN+ ++ K+ L+D++ LK G VIP Sbjct: 225 ETLDSGLQTDVDDIDDRWIKSLREDILNATVNMGCKVAEKEVPLRDIIDLKEGDVIPMEM 284 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++SANG + +LG+ N +++ ++IN + Sbjct: 285 PGD--LVISANGIPMMLAKLGQSKGNLALQVVEKINNE 320 >gi|298530627|ref|ZP_07018029.1| flagellar motor switch protein FliM [Desulfonatronospira thiodismutans ASO3-1] gi|298510001|gb|EFI33905.1| flagellar motor switch protein FliM [Desulfonatronospira thiodismutans ASO3-1] Length = 325 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 37/298 (12%), Positives = 91/298 (30%), Gaps = 10/298 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 R+ + + + + M VD + S Sbjct: 31 EDSGVVTFDLSNQDRIIRG------RMPVLEIINDRFARLATNTMANAMRKRVDFNPISI 84 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 KF + S + + N + LV L+EN G + ++ R Sbjct: 85 DMSKFGDFMRSLPVPTSINIFKIDPLRGNALMIIDTRLVFALVENFFGGTGSQP-KIEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + +E+ + + + + L E + +E + T ++ V + Sbjct: 144 DFTPIEQSIVVKVSKMLLSNLEDAWRPVHEVN--IELTRSEVNPQFATIVPPSDVVVVVT 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +EN S V+ +P T+ S Q++ + F + ++ V+ + Sbjct: 202 FEVELENAIGSMVVCLPYATIEPIRSKLYASYQSERLEVDHAWLSRFKERLLEIPVDFNV 261 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + T + ++ ++ G ++ ++ G + G N ++ Sbjct: 262 TMGKTQITGRQLLNMEAGDILMLDTDQEDLLKAYVQGVLKFHGVPGFTKGNKAFQVVQ 319 >gi|154250207|ref|YP_001411032.1| flagellar motor switch protein FliM [Fervidobacterium nodosum Rt17-B1] gi|154154143|gb|ABS61375.1| flagellar motor switch protein FliM [Fervidobacterium nodosum Rt17-B1] Length = 329 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 101/293 (34%), Gaps = 7/293 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + + + + K+ ++ + + S Sbjct: 40 DFLRPQKFSKEQIRTVQMIHENFARSVSTYLSGKLRSFTSVNVVGIDQLTYDEYMKSIGN 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + + + + + + +L+ LLG E I R + +E + K+ I Sbjct: 100 PSFITIFTAREFVGSSILNINLEIFYGILDVLLGGPGEVID--AKRVPTEIEIGIIKKEI 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 I L+Q ++ P +E + SNE V + + + + Sbjct: 158 VNILTSLSQAWASVHPFIPVVE--STETNPQFVQVVPSNEMVLAVTFFVNFGKIEGYMSI 215 Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 P + + K + +++L++ + +++ +I K TL ++ Sbjct: 216 CWPSSVIEPIGEKLTTQSWFKIKQKEVTQELVENLKLNIKKAKLDVIAKIGETKLTLGEI 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +TL++G VI + NGK + + G+ NY ++IT I ++ Sbjct: 276 LTLEVGDVIRLREHYDEPIKIEVNGKTKFLGKPGQFKGNYAVKITKVIEEGEE 328 >gi|146307837|ref|YP_001188302.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp] gi|145576038|gb|ABP85570.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp] Length = 323 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 93/279 (33%), Gaps = 6/279 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q L + Sbjct: 110 LRGTGLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + + E +E V ++ ++ + +P + Sbjct: 169 HAVMDIN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYSMIEPIR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++Q E I ++V + + ++ L+D++ ++ G VIP Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVEL 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 E I+ ANG + +LG N +++ + I + Sbjct: 287 PEN--VIMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323 >gi|153954743|ref|YP_001395508.1| hypothetical protein CKL_2125 [Clostridium kluyveri DSM 555] gi|219855207|ref|YP_002472329.1| hypothetical protein CKR_1864 [Clostridium kluyveri NBRC 12016] gi|146347601|gb|EDK34137.1| FliM [Clostridium kluyveri DSM 555] gi|219568931|dbj|BAH06915.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 331 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 46/310 (14%), Positives = 102/310 (32%), Gaps = 13/310 (4%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 + + P + K + + Y + + ++ +V + Sbjct: 29 QEEEQQKVKPYDFRSPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKV 82 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 S Q + IHS + + + S + V +++ LLG S + Sbjct: 83 ESVQQITYEEFIHSVPNPTILTIFKMPPLSGTVLFEINPQFVFEIIDLLLGGSGT--GKY 140 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + ++K + K + + L E +E N N+ + Sbjct: 141 KAREFTDIDKNIIKVVNEGLISNLKLAWEDVMEVETEVEGIET--NPALNQTLAPNDPIA 198 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLN 239 I+ ++ + + + IP ++ K Q+ E + + + + Sbjct: 199 LISFSVELGKSTTFINICIPYLSIEKVLDKLVVQYWFQDGDEEVLAESREKLRERLNIVG 258 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +++ + + T+ + + L IG V+ + L K Y + G +GKN I Sbjct: 259 IHLTAVLGTVEVTVNEFLNLNIGDVLTLKEKTTDPVKLMLEDKIYYYGKPGIIGKNMGIE 318 Query: 300 ITDRINFDQK 309 I D I+ D + Sbjct: 319 ILDIIDKDVE 328 >gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521] gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521] gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 107/283 (37%), Gaps = 7/283 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + Y + + + +V + + + + IHS + + + Sbjct: 48 SKEHIRTLELVHDNYARIISNYLTGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITVFK 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + N + + +++ LLG + + ++ + S ++K + ++ + + L Sbjct: 108 MPPLAGNIIFETNPQFSLQVIDILLGGNGDR--KVEAKEFSDIDKNIMRQITTGMISNLK 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P +E N N+ V I ++ + ++ + IP ++ Sbjct: 166 LAWESILEVEPEVEGIET--NPAINQTLAPNDPVALITFSVEMNKRSTFINMCIPYLSIE 223 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 K S +N E+ + + ++++V++ + T++D + L +G V Sbjct: 224 KILDKLVVQYSFKNDDESLKAESREKIEEGIHKVDVDVIAELGKTSLTVEDFLKLNVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 I R + + +E Y + G GKN + I D + + Sbjct: 284 IKLDTRSSSPIKVYVGNEECYCAKPGVSGKNMGVMILDITDKE 326 >gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans ISDg] gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans ISDg] Length = 325 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 30/291 (10%), Positives = 96/291 (32%), Gaps = 7/291 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + Y + L + +V + + ++ + ++ Sbjct: 39 DFHRPSKFSKEHLRTLDIIFEHYGRLLSTHLPAYLRKNVQVEVINSEAVVYQEFTNALSN 98 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + N I + N+ +++ +LG S + + +R S +E + +R Sbjct: 99 PVLLGIIDFAPLEGNIIIELAENVGYAIVDRMLGGSGNPLEK--SRDFSEIELVIIERIF 156 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 ++ +L + + + +P L + ++ + + +N+ I N+ + Sbjct: 157 TVMTNILAEPWANVVKLNPRLIRIET--NSQFAQIISPSDMASIVTLNIKIGNIEGMMNV 214 Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +P L E + + + + + + +L ++ Sbjct: 215 CLPYACLEVIIDKLNTKYWYSTMQEKGDSNYQEFIETAISRARIPVKAVLGKSSISLNEL 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + ++ G +I + + + ++ G +Y ++I+ I + Sbjct: 275 INMQKGDIIKLDRKIDDELSVYVGNIKKFTALPGASSDSYAVKISTIIREE 325 >gi|15639708|ref|NP_219158.1| flagellar motor switch protein FliM [Treponema pallidum subsp. pallidum str. Nichols] gi|6225364|sp|P74927|FLIM_TREPA RecName: Full=Flagellar motor switch protein FliM gi|2196898|gb|AAB61256.1| flagellar switch protein [Treponema pallidum] gi|3323023|gb|AAC65687.1| flagellar motor switch protein (fliM) [Treponema pallidum subsp. pallidum str. Nichols] gi|291060085|gb|ADD72820.1| flagellar motor switch protein FliM [Treponema pallidum subsp. pallidum str. Chicago] Length = 344 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 41/312 (13%), Positives = 106/312 (33%), Gaps = 11/312 (3%) Query: 2 RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58 G + ++ P+ I L K + S + + + ++ V Sbjct: 19 SGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFARLTTTSLSAQLRSMV 78 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 + S + I S + ++ N + ++ ++++ L G + + Sbjct: 79 HVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSITFSIIDRLFGGTGQA 138 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 R L+ +E + + I +I A + + + + P L + + Sbjct: 139 AKV--QRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQIET--NPQFAQIVPPS 194 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235 E V + + + IP T+ + + + + K Sbjct: 195 EMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGVLRDKL 254 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294 +++++ + + +++D++ L++G +I +LS ++ + C+ G VGK Sbjct: 255 STVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGK 314 Query: 295 NYTIRITDRINF 306 +I +RI Sbjct: 315 KIAAQILERIES 326 >gi|330502773|ref|YP_004379642.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01] gi|328917059|gb|AEB57890.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01] Length = 323 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 93/279 (33%), Gaps = 6/279 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D++ Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q L + Sbjct: 110 LRGTGLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + + E +E V ++ ++ + +P + Sbjct: 169 HAVMDIN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYSMIEPIR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++Q E I ++V + + ++ L+D++ ++ G VIP Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVEL 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 E ++ ANG + +LG N +++ + I + Sbjct: 287 PEN--VVMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323 >gi|146341901|ref|YP_001206949.1| flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278] gi|146194707|emb|CAL78732.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278] Length = 400 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 98/295 (33%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +F Sbjct: 87 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V S W + + L+ ++++ LLG T ++ R +T+E Sbjct: 147 MNSIPLPAVLSVFKAEEWENFGLAMVDSTLIYSIIDVLLGGRRGNTQLRVEGRPYTTIET 206 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR I + A Q ++ + + + + +E+ Sbjct: 207 NLVKRLIEVVLADAEQAFRPLSPVRFTIDRLET--NPRFAAISRPANAAILVKLRIDMED 264 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + L + + FA + + V +D + Sbjct: 265 RGGNIELLLPYATIEPIRPVLLQMFMGEKFGRDPVWEGHFATEITRAEVAVDAVLYEADV 324 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK ++ LK+G +P R + + +GRVG IR+T + Sbjct: 325 PLKQLMRLKVGDTLPLDIRPDALVAVRCGNTMLTEGRMGRVGDRVAIRVTKNLRK 379 >gi|319944169|ref|ZP_08018445.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC 51599] gi|319742464|gb|EFV94875.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC 51599] Length = 349 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 97/298 (32%), Gaps = 11/298 (3%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P R+ + + + L M + +I+++ G++S Sbjct: 58 PYDLARQERIIRG------RMPALELIHERFARSLGLAMFTFMQRNPEITHSDPVVGRYS 111 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + + + + + + LV T+++ + G + + + R S E Sbjct: 112 DFLGTIQLPASINIMQTRPLAGSALLVLDGQLVSTIVDLMFGGTGRPMRKSEGREFSMTE 171 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 ++L K+ I S+ + + + + E V + + Sbjct: 172 QRLIKKLIDLSSSEYGRAWESIHPMELVFTR--SESQPQFANIAIPAEMVVSTTFTLDFN 229 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKK 250 + + + IP L SS N + + + + +++ V + + Sbjct: 230 GQSGTIQICIPYSVLEPIRDTLSSSLNTNSGEEKRSWLGQMSKEIKPAGVELVAELTTAT 289 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 TL +++ L+ G VI A+L I++ G Y +RI ++ Sbjct: 290 LTLGELMKLRTGDVIEIETGPG--AMLKIGQVPIFNGRYGEHNGRYAVRIDTVHSYTD 345 >gi|189025946|ref|YP_001933718.1| flagellar motor switch protein FliM [Treponema pallidum subsp. pallidum SS14] gi|189018521|gb|ACD71139.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] Length = 344 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 41/312 (13%), Positives = 106/312 (33%), Gaps = 11/312 (3%) Query: 2 RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58 G + ++ P+ I L K + S + + + ++ V Sbjct: 19 SGDASIEDARPISDTRKIKLYDFRRPDKFSKEQMRTLSLMHETFARLTTTSLSAQLRSMV 78 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 + S + I S + ++ N + ++ ++++ L G + + Sbjct: 79 HVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSITFSIIDRLFGGTGQA 138 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 R L+ +E + + I +I A + + + + P L + + Sbjct: 139 AKV--QRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQIET--NPQFAQIVPPS 194 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235 E V + + + IP T+ + + + + K Sbjct: 195 EMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGVLRDKL 254 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294 +++++ + + +++D++ L++G +I +LS ++ + C+ G VGK Sbjct: 255 STVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGK 314 Query: 295 NYTIRITDRINF 306 +I +RI Sbjct: 315 KIAAQILERIES 326 >gi|90423020|ref|YP_531390.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] gi|90105034|gb|ABD87071.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] Length = 404 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 101/295 (34%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +FS Sbjct: 91 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDY 150 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 + S V S W + + L+ ++++ LLG + ++ R +T+E Sbjct: 151 MSSIPLPAVLSVFKAEEWENFGLATVDSALIYSMIDVLLGGRRGQASMRVEGRPYTTIET 210 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR + + A Q + ++ + + +++ +E+ Sbjct: 211 NLVKRLVEVVLADAEQAFRPLSPVTFKIDRLET--NPRFAAITRPANAAILVRLHIDMED 268 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + + + + + + Q +++D + + Sbjct: 269 RGGNIELLLPYATIEPIRAVLMQMFMGEKFGRDPIWEGHLSTEIAQAEISVDAVLYEAEI 328 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK ++ LK+G +P R + + +GRV IR+T ++ Sbjct: 329 PLKQLMRLKVGDTLPLELRADALVAVRCGNVTLTEGRMGRVADRVAIRVTKQLRK 383 >gi|66768580|ref|YP_243342.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. 8004] gi|66573912|gb|AAY49322.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] Length = 337 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 18/303 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G++ + S I+ R+ + + + + D+ Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S KF+ +HS + I LV T+++N G Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E ++ + + Q A L + + + E E+ Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197 Query: 181 VTTINMNMTIENVASSFVLIIPQ--ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 V ++ +E P + Q+ ++ + + Sbjct: 198 VVVCRFHVELEG-GGRRDPHHPAVLDAGADPRTARRRHQSDRNDRDDSWNVMLREQLDTA 256 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V + + + K+ +L+ + LKIG ++P + L +++ E G N + Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAV 314 Query: 299 RIT 301 +IT Sbjct: 315 KIT 317 >gi|83312597|ref|YP_422861.1| flagellar motor switch protein FliM [Magnetospirillum magneticum AMB-1] gi|82947438|dbj|BAE52302.1| Flagellar motor switch protein fliM [Magnetospirillum magneticum AMB-1] Length = 393 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 101/291 (34%), Gaps = 4/291 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 99 DKSGIQAILNSALVSYERLPMLEVVFDRLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDY 158 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S + + W + + ++L+ ++++ LLG ++ R +T+E+ Sbjct: 159 LNSIPLPAMLAVFKAEEWDNFGLLTVDSSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 218 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R + + + L+ + + + T + + + +E+ Sbjct: 219 NLVERMVHVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMED 276 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL + L + + A + + V ++ ++ + Sbjct: 277 RGGRLELLLPYATLEPVRELLLQMFMGEKFGRDSIWETHLAEELWLTEVELEAVLDEQVM 336 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L++V+ K G + + ++ +GR G++ I++ + Sbjct: 337 NLREVLNWKPGSKFMLNATADSQIDMRCGEVAMFRGRMGRKGQHIAIQVDE 387 >gi|294500928|ref|YP_003564628.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551] gi|294350865|gb|ADE71194.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551] Length = 328 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 103/282 (36%), Gaps = 7/282 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + Y + L +F ++ V +S S + I S + + + + Sbjct: 49 SKDQIRSLTRIHENYARMLINVFSAQLRNVVQVSVVSVDQIPYEEFIRSVPKVTILNVIA 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + N+ +L+ LLG E+ ++ N L+ +E L + + + + Sbjct: 109 VPPLEGHIIMEVNPNIAYAMLDRLLGGQGESGGEISN--LTEIETSLVRNLLEKTLDSMR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S+ E P E + NE V I++N+ I + L IP TL Sbjct: 167 EAWSSIAEIEP--ETSEFEVNPQFLQVISPNEIVIVISLNVQIGDETGMINLCIPHVTLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q+ + + ++ + + + + +++D + L G V Sbjct: 225 PIVSKLSVHYWMQSSKKEPNVQEVEQLKEQINDAELQVVAELGTADISIEDFLALDAGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 I + + + + G+V + + ++I D + Sbjct: 285 IRLQTSVHNPLTIYVGEQPKFIAQPGKVSRKFAVQILDDVKR 326 >gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum JL354] Length = 339 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 4/293 (1%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L + + + + + +++S S +F ++ Sbjct: 47 LRAVIESRVVSHARLPMLEVVCERMVRSFATSMRNLTSDAIEVSLDDIASVRFGDFMNRV 106 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAK 136 + + + +W + NL+ +++ LLG ++ R+ +T+E L Sbjct: 107 PLPCMIAVFKVPAWQDYGLVTIEANLIYAVVDALLGGRKGAAPRKIEGRAFTTIETTLVS 166 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + I + + + LE + + + ++ + Sbjct: 167 KMIELVLREFSTAFEPIAPITMELERIET--SPRFAAIAGPTNVASAATFAVDMDGRGGN 224 Query: 197 FVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 F +++P TL + D + + V I T + ++ L D Sbjct: 225 FTILLPFATLEPVRGKLSQRFMGEKLGGDNTWRDHMRNEILRTEVEIYTVLGEREMRLAD 284 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 V +L+IGQ IPF + G + ++GR + I I D I Q Sbjct: 285 VHSLEIGQTIPFDVTPDDPFEVCCGGVPLARAQIGRQRNHVAIGIVDTIKQGQ 337 >gi|23015785|ref|ZP_00055552.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 395 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 101/291 (34%), Gaps = 4/291 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 101 DKSGIQAILNSALVSYERLPMLEVVFDRLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDY 160 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S + + W + + ++L+ ++++ LLG ++ R +T+E+ Sbjct: 161 LNSIPLPAMLAVFKAEEWDNFGLLTVDSSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 220 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R + + + L+ + + + T + + + +E+ Sbjct: 221 NLVERMVHVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMED 278 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL + L + + A + + V ++ ++ + Sbjct: 279 RGGRLELLLPYATLEPVRELLLQMFMGEKFGRDSIWETHLAEELWLTEVELEAVLDEQVM 338 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L++V+ K G + + ++ +GR G++ I++ + Sbjct: 339 NLREVLNWKPGSKFMLNATADSQIDMRCGEVAMFRGRMGRKGQHIAIQVDE 389 >gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM 3645] gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM 3645] Length = 376 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 12/297 (4%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + +P R+ K + S+ + + + V++ TS Sbjct: 58 EKITPYDFKRPERVG------KEQMRALQSMHEGFGRNFGAALSGLLRNIVEVKLTSVDQ 111 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 +S I S + F+ + S N + + +++ +++ LLG + + R L Sbjct: 112 LTYSEFIFSLENPSCFNLLTASPLEGNLILDINPSILYPIIDRLLGG-GKESSPVSRRPL 170 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + +E L R L + ++ + NE + I+ Sbjct: 171 TEIELTLVARITNLFLRELRIAWENVLDLQLSVVRVE--SNPQLVQIVPPNEVIVLISFE 228 Query: 188 MTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +TI +V L IP ++ + + SE+ + + +V + Sbjct: 229 LTIGDVRGMMNLCIPFNSIERIGGKLTANTWFAYGTSEVSEESRQALSTQIDGASVEVGV 288 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + K T +D++ L++G VI + +S NG + G I++ Sbjct: 289 TLAETKITTEDLLELRVGDVITTPKDSREPLKVSVNGVTKFLAFPGAFKGRKAIQVD 345 >gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] Length = 352 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L M V+I S + + S F+ S Sbjct: 50 SKEQLRAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + ++ +++ LLG + R S +E L + Q+ L Sbjct: 110 MKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYEST--REFSDIELNLLDTILRQMMQNLK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + E PN++ + NE V + M + I + + L P +L Sbjct: 168 EAWAPITEIFPNVDVKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLE 225 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 S + + VN+ + K TL++++ L++G ++ Sbjct: 226 SVLSRLASRDIMLSETSSKKSRNKELQALLGGAKVNVAAILGETKLTLREILDLEVGDIM 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 I++ +G+E + +G TI I + I ++ +K L Sbjct: 286 RLDRPADDTVIINVDGREKFLASIGLHRYRKTIEIKEMIKTEKDQVKEILEM 337 >gi|255523752|ref|ZP_05390718.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] gi|296186755|ref|ZP_06855157.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] gi|255512621|gb|EET88895.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] gi|296048792|gb|EFG88224.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] Length = 332 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 46/310 (14%), Positives = 104/310 (33%), Gaps = 14/310 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + + P + K + + Y + + ++ +V + Sbjct: 30 EEEKQKVKPYDFRSPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S Q + IHS + + + S + + +++ LLG + Sbjct: 84 SVQQITYEEFIHSVPNPTILTVFKMPPLSGSVLFETNPQFSFEIIDVLLGGKGT--GKYK 141 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + ++K + + + L E + +E N NE V Sbjct: 142 AREFTDIDKNIMMVINTGLISNLKLAWDDVLEVNTEIEGLET--NPALNQTLAPNEAVAL 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQS-EDLIDPFARKTYQLN 239 I ++ + ++ + IP ++ K Q+ ++ E+ ++ +N Sbjct: 200 ITFSVEMGKSSTFINICIPYLSIEKVLDKLVVQYWFQDTNDEAILEESRVKLRQRLNIVN 259 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ + T+ D + L +G V+ + T L K + G +GKN ++ Sbjct: 260 MNLTAVLGTTNITVDDFLRLGVGDVLTLNDKANTPIKLMVEDKPYCYGKPGVLGKNMGVQ 319 Query: 300 ITDRINFDQK 309 I D I+ D + Sbjct: 320 ILDIIDKDVE 329 >gi|75675317|ref|YP_317738.1| flagellar motor switch protein FliM [Nitrobacter winogradskyi Nb-255] gi|74420187|gb|ABA04386.1| Flagellar motor switch protein FliM [Nitrobacter winogradskyi Nb-255] Length = 401 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 103/295 (34%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +F Sbjct: 88 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 147 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V S W + ++L+ ++++ LLG ++ ++ R +T+E Sbjct: 148 LNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRGQSSLRIEGRPYTTIET 207 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR + + A Q S +++ + + + + +E+ Sbjct: 208 NLVKRLVEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAITRPANAAILVRLRIDMED 265 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + L + + A + Q + +D + + Sbjct: 266 RGGTIELLLPYATIEPIRNVLLQMFMGEKFGRDPIWESHLATEIAQAQIAVDAVLYEAEI 325 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+ ++TLK+G +P R + + +GRVG IR++ + Sbjct: 326 PLRQLMTLKVGDTLPLEMRPDASVAVRCGSVTLTEGRMGRVGDRVAIRVSRHLRK 380 >gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC 49176] gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC 49176] Length = 326 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 7/292 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + S+ Y + L + V + ++ + +S Sbjct: 39 DFARPSKFSKDHLRTLESIFEHYGRLLSANLPAYLRKTVQVEVRGSEAITYQEFQNSLSN 98 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + +L + + SNNL T+++ LLG I + R S +E + +R + Sbjct: 99 PVLLAIMNLPPLKGSCIMEMSNNLGYTIIDRLLGGEGNPIEKT--RDFSEIEIVVLERIL 156 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + L + E +P L + E I +++ I V Sbjct: 157 NTCTNYLEEPWHNVVEITPTLMRIET--NAQYAQIISPQEMTALITLSIKIGTVEGFMSF 214 Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +P L E + + + + I + ++ D Sbjct: 215 CLPFTALEDVMDRLNTKFWFSALQEKDDTNYGEQIEEIIDRAQIPIRAVLGKSVVSVNDF 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 V L+ G V+ + + + + G Y +RIT I ++ Sbjct: 275 VNLQPGDVVRLNAKVDDELDVFVGNMKKFKALPGASSGVYALRITKVIREEE 326 >gi|148256789|ref|YP_001241374.1| flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1] gi|146408962|gb|ABQ37468.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1] Length = 400 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 98/295 (33%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +F Sbjct: 87 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V S W + + L+ ++++ LLG T ++ R +T+E Sbjct: 147 MNSIPLPAVLSVFKAEEWENFGLATVDSTLIYSIIDVLLGGRRGNTQLRVEGRPYTTIET 206 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR I + + Q ++ + + + + +E+ Sbjct: 207 NLVKRLIEVVLSDAEQAFRPLSPVRFTIDRLET--NPRFAAISRPANAAILVKLRIDMED 264 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + L + + FA + Q V +D + Sbjct: 265 RGGNIELLLPYATIEPIRPVLLQMFMGEKFGRDPVWEGHFATEIAQAEVAVDAVLYEADV 324 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK ++ LK+G +P R + + +GRVG IR+T + Sbjct: 325 PLKQLMRLKVGDTLPLDIRPDALVAVRCGSTMLTEGRMGRVGDRVAIRVTKNLRK 379 >gi|148380702|ref|YP_001255243.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 3502] gi|153934250|ref|YP_001384986.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 19397] gi|153934570|ref|YP_001388456.1| flagellar motor switch protein FliM [Clostridium botulinum A str. Hall] gi|170761147|ref|YP_001788060.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str. Loch Maree] gi|226950156|ref|YP_002805247.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str. Kyoto] gi|148290186|emb|CAL84305.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 3502] gi|152930294|gb|ABS35794.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 19397] gi|152930484|gb|ABS35983.1| flagellar motor switch protein FliM [Clostridium botulinum A str. Hall] gi|169408136|gb|ACA56547.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str. Loch Maree] gi|226842452|gb|ACO85118.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str. Kyoto] gi|322807053|emb|CBZ04627.1| flagellar motor switch protein FliM [Clostridium botulinum H04402 065] Length = 331 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + + P + K + + Y + + ++ +V + Sbjct: 30 EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S Q + IHS + + + + + + V +++ LLG + ++ Sbjct: 84 SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + ++K + K+ + L E +E N E V Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240 I ++ + + + IP ++ K + E E + +++ Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T+++ + L +G V+ R + L + Y + G +GKN ++I Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVALDTRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319 Query: 301 TDRINFDQK 309 D+I+ D + Sbjct: 320 LDQIDKDVE 328 >gi|295706274|ref|YP_003599349.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319] gi|294803933|gb|ADF40999.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319] Length = 333 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 103/286 (36%), Gaps = 7/286 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + Y + L +F ++ V +S S + I S + + + + Sbjct: 49 SKDQIRSLTRIHENYARMLINVFSAQLRNVVQVSVVSVDQIPYEEFIRSVPKVTILNVIA 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + N+ +L+ LLG E+ ++ N L+ +E L + + + + Sbjct: 109 VPPLEGHIIMEVNPNIAYAMLDRLLGGQGESGEEISN--LTEIETSLVRNLLEKTLDSMR 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S+ E P E + NE V I++N+ I + L IP TL Sbjct: 167 EAWSSIAEIEP--ETSEFEVNPQFLQVISPNEIVIVISLNVQIGDETGMINLCIPHVTLE 224 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 Q+ + + ++ + + + + +++D + L G V Sbjct: 225 PIVSKLSVHYWMQSSKKEPNVQEVEQLKEQINDAELQVVAELGKADISIEDFLALDAGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 I + + + + G+V + ++I D + + Sbjct: 285 IRLQTSVHNPLTIYVGEQPKFIAQPGKVSRKVAVQILDDVKRRNER 330 >gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM 16294] gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM 16294] Length = 366 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 107/315 (33%), Gaps = 6/315 (1%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 +S +N P + L K + + + L M V+I Sbjct: 26 ESDEENLLPQRQVTLYDFKRPNRVSKEQLRAFRGVHDKMARSLASQISSIMRSIVEIQLH 85 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S + + S F+ S+ + I + ++ +L+ LLG E Sbjct: 86 SVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGIIEINPSIAFPMLDRLLGGKGEPFD--A 143 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 +R S +E L + + + + L + E P +E + NE V Sbjct: 144 SREFSDIELSLFETILRVMMSTLKEAWGPVMEIYPTIESKESSPNV--VQIVAQNEIVVM 201 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVN 241 + M + I + + + P +L S + + VN Sbjct: 202 VVMEIIIGHSSGMMNICYPVISLEPVLPKLASRDLMLNETSSKKSRNTELKVLLGGAKVN 261 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 ++ + ++ D++ LK+G VI ++ +GKE + E+G +I IT Sbjct: 262 VEANLGDADLSMHDILELKVGDVIRLSSAANDIVTVAVDGKERFRGEIGLRRFRKSISIT 321 Query: 302 DRINFDQKSLKNFLH 316 + I ++ ++K L Sbjct: 322 EIIETEKDTVKRALE 336 >gi|3894104|emb|CAA11954.1| flagellar C-ring protein [Sinorhizobium meliloti] Length = 315 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 92/312 (29%), Positives = 158/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I + Sbjct: 64 FRTGLRNDLIAALGDGVLLGDFSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLEDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRIVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|254785477|ref|YP_003072906.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901] gi|237685691|gb|ACR12955.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901] Length = 332 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 97/277 (35%), Gaps = 6/277 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D+S Q KF +H+ + Sbjct: 48 RMPTLEMINERFARYTRISMFNLLRRTADVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRP 107 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 I LV L++N G ++ R + E ++ + + Q+ L++ Sbjct: 108 LRGTALIILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLEQVFVDLHEAW 166 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + E +E V ++ ++ + +P + Sbjct: 167 KAVKLID--FEYINSEVNPSMANIVSPSEVVVVSTFHVELDGGGGELHITMPYSMVEPIR 224 Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 I + Q+ ++ + + + + V+++ + + TL+++V LK+G +IP Sbjct: 225 EILDAGLQSDTDERDDRWVQALREDVMRARVDLECDVVRRDITLREIVDLKVGDIIPVTM 284 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 E A ANG ++ ++G+ N +RI D ++ Sbjct: 285 PEVHIAT--ANGVPMFQAKIGQCNNNLALRILDYVDR 319 >gi|118475490|ref|YP_892646.1| flagellar motor switch protein FliM [Campylobacter fetus subsp. fetus 82-40] gi|118414716|gb|ABK83136.1| flagellar motor switch protein FliM [Campylobacter fetus subsp. fetus 82-40] Length = 363 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 100/292 (34%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L M V+I S + + S F+ S Sbjct: 50 SKEQLRAIKGIHDKLARNLASQISSIMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFS 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + ++ +++ LLG + + NR L+ +E L + + L Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGNGDGFE--SNRELTDIEINLLDAILRIMMQRLK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + PN+E + NE V + M + I N + + P L Sbjct: 168 ESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMINICYPVIYLE 225 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + V + + ++ + + L+ G ++ Sbjct: 226 PILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGRTVISVNEFLNLQEGDIL 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 AI+ + K+++ ++G +I+I + I D+ +KN L + Sbjct: 286 RLDKSADDKAIVCIDKKDVFLAQIGLHRFRKSIKIEELIKTDKDEIKNILEQ 337 >gi|115523559|ref|YP_780470.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] gi|115517506|gb|ABJ05490.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] Length = 403 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 105/295 (35%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +FS Sbjct: 90 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDY 149 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V S W + ++L+ ++++ LLG +T ++ R +T+E Sbjct: 150 MNSIPLPAVLSVFKAEEWENFGLATVDSSLIYSMIDVLLGGRRGQTSMRIEGRPYTTIET 209 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR + + A Q + ++ + + +++ +E+ Sbjct: 210 NLVKRLVEVVLADAEQAFRPLSPVTFKIDRLET--NPRFAAITRPANAAILVRLHIDMED 267 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + + + + A + Q +++D + + Sbjct: 268 RGGNIELLLPYATIEPIRAVLMQMFMGEKFGRDPIWEGHLATEITQAQISVDAVLYEAEL 327 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK +++LK+G +P R + + +GRV IR+T ++ Sbjct: 328 PLKQLMSLKVGDTLPLEMRPDALVSVRCGSVILTEGRMGRVADRVAIRVTKQLRK 382 >gi|239906894|ref|YP_002953635.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1] gi|239796760|dbj|BAH75749.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1] Length = 326 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 89/297 (29%), Gaps = 10/297 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 R+ + + + + M D++ S Sbjct: 32 DSGVVVFDLSNQDRIIRG------RMPVLEIINDRFARLASNAMANAMRKRADVNPISID 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + S + L N + + LV ++E+ G + ++ R Sbjct: 86 MSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVDSRLVFAMVESFFGGAGSQP-KIEGRD 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E+ + R + + + E ++E + ++ V + Sbjct: 145 FTPIEQAIINRVVRIALENMEESWQPVHEV--HIELVRSEVNPQFAAIVPPSDVVVVVTF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +EN S ++ +P T+ S Q + I F + + V + R Sbjct: 203 EVELENAIGSLIVCLPYATIEPIRSKLYASFQTERLEVDHAWIARFKERLMETPVELLVR 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T + +++LK G ++ + G + G V N +I Sbjct: 263 FGRSQITGRQLLSLKPGDILMLENDVDELLEAEIQGVRKFQGIPGLVKSNKAFQIVK 319 >gi|218886491|ref|YP_002435812.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757445|gb|ACL08344.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 326 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 95/318 (29%), Gaps = 22/318 (6%) Query: 1 MRGQSIHKNTS---------PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFK 51 + G I T P R+ + + + + Sbjct: 17 LSGGEIESETDIPEDDSGIVPFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALS 70 Query: 52 EKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENL 111 + V+++ S KF + S + + N I + LV L+EN Sbjct: 71 NTVRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVDSRLVFALVENF 130 Query: 112 LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171 G + ++ R + +E+ + R I + + + +LE + Sbjct: 131 FGGAGSQP-KIEGREFTRIEQAIVDRVIKIALDNMEESWRPVHDV--SLELVRSEINPQF 187 Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDP 230 ++ V I + +E S V+ +P T+ S Q + + Sbjct: 188 AAIVPPSDVVVVITFEVELETAIGSMVICLPYATIEPIRSKLHASFQTERLEVDHAWVSR 247 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + VN+ K T ++ L++G V+ + G + G Sbjct: 248 LKERLLETPVNLKIHFGESKITGNQLLRLQVGDVLLLDTDTDDLLECTVQGVTKFWGISG 307 Query: 291 RVGKNYTIRITDRINFDQ 308 V N +I I ++ Sbjct: 308 TVKANKAFQI---IKEEE 322 >gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD 1] gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD 1] Length = 365 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 110/315 (34%), Gaps = 6/315 (1%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 +S N P + L K + + + L M V+I Sbjct: 26 ESSDDNMLPQRQVTLYDFKRPNRVSKEQLRAFRGVHDKMARSLASQISSIMRSIVEIQLH 85 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S + + S F+ S+ + I + ++ +L+ LLG E Sbjct: 86 SVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGVIEINPSIAFPMLDRLLGGKGEPFD--A 143 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 +R S +E L + + + + L + E P +E + NE V Sbjct: 144 SREFSDIELSLFETILRVMMSTLKEAWGPVMEIYPTIESKESSPNV--VQIVAQNEIVVM 201 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVN 241 + M + I + + + P +L S + + VN Sbjct: 202 VVMEIIIGHSSGMMNICYPVISLEPILPKLASRDLMLNETSSKKSRNTELQVLLGGAKVN 261 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 ++ + + T++DV+ L+IG V+ +S +GKE + ++G +I+I+ Sbjct: 262 VEANLGDAELTMRDVLDLQIGDVVRLSSAANDIVTVSIDGKERFRGQIGLRRFRKSIQIS 321 Query: 302 DRINFDQKSLKNFLH 316 + I+ ++ ++K L Sbjct: 322 EIIDTEKDAVKRALE 336 >gi|153940240|ref|YP_001392022.1| flagellar motor switch protein FliM [Clostridium botulinum F str. Langeland] gi|170756595|ref|YP_001782350.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str. Okra] gi|152936136|gb|ABS41634.1| flagellar motor switch protein FliM [Clostridium botulinum F str. Langeland] gi|169121807|gb|ACA45643.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str. Okra] gi|295320037|gb|ADG00415.1| flagellar motor switch protein FliM [Clostridium botulinum F str. 230613] Length = 331 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + + P + K + + Y + + ++ +V + Sbjct: 30 EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S Q + IHS + + + + + + V +++ LLG + ++ Sbjct: 84 SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + ++K + K+ + L E +E N E V Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240 I ++ + + + IP ++ K + E E + +++ Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T+++ + L +G V+ + + L + Y + G +GKN ++I Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVALETKTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319 Query: 301 TDRINFDQK 309 D+I+ D + Sbjct: 320 LDQIDKDVE 328 >gi|150019115|ref|YP_001311369.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB 8052] gi|149905580|gb|ABR36413.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB 8052] Length = 332 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 105/283 (37%), Gaps = 7/283 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + Y + + + +V + + + + IHS + + + Sbjct: 48 SKEHIRTLELIHDNYARIISNYLTGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITIFK 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 ++ S + + +++ LLG + + + + ++K + ++ + + L Sbjct: 108 MAPLSGTIIFETNPQFSLQVIDVLLGGKGDR--KAQAKEFTDIDKNIMRQVTTGMISNLK 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P +E N N+ V I ++ + ++ + +P ++ Sbjct: 166 LAWDSVLEVEPEVETIET--NPAINQTLSPNDPVALITFSVEMNKRSTFINMCLPYLSVE 223 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 K + +N +E + + + +++V I + T+ D + L +G V Sbjct: 224 KILDKLVVQYAFKNDNEASMAESREKLEKGINKVDVEIVAELGTANITVDDFLKLTVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 I ++ + + +E Y + G VGKN + I D + + Sbjct: 284 IKLDNKSSSPIKVYVGNEECYYAKPGVVGKNAGVMILDITDKE 326 >gi|168183192|ref|ZP_02617856.1| flagellar motor switch protein FliM [Clostridium botulinum Bf] gi|237796179|ref|YP_002863731.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str. 657] gi|182673661|gb|EDT85622.1| flagellar motor switch protein FliM [Clostridium botulinum Bf] gi|229262117|gb|ACQ53150.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str. 657] Length = 331 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + + P + K + + Y + + ++ +V + Sbjct: 30 EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S Q + IHS + + + + + + V +++ LLG + ++ Sbjct: 84 SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + ++K + K+ + L E +E N E V Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240 I ++ + + + IP ++ K + E E + +++ Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T+++ + L +G V+ R + L + Y + G +GKN ++I Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVSLETRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319 Query: 301 TDRINFDQK 309 D+I+ D + Sbjct: 320 LDQIDKDVE 328 >gi|187933524|ref|YP_001885005.1| flagellar motor switch protein FliM [Clostridium botulinum B str. Eklund 17B] gi|187721677|gb|ACD22898.1| flagellar motor switch protein FliM [Clostridium botulinum B str. Eklund 17B] Length = 331 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 43/314 (13%), Positives = 105/314 (33%), Gaps = 11/314 (3%) Query: 1 MRGQSIHKNTSPLHPIL----LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL 56 + + T+P L K + + + + ++ Sbjct: 17 LSTGELEPETAPKDDEKHKIKLYDFKSPQKFSKDHIRTLELIHDNFARITSNYLTGQIRK 76 Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V + + + + IHS + + + + + + + +++ LLG S Sbjct: 77 NVKVKIETVEQITYEEFIHSVQNPTIITIFKMPPLTGSIIFETNPQFSFQIIDILLGGSG 136 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + ++ N+ S ++K + ++ + + L SP +E N Sbjct: 137 DR--KIGNKEFSDIDKNIIRQVTTGMISNLKLAWEDILNVSPEVEGIET--NPAINQTLA 192 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFAR 233 NE V I ++ ++ + IP ++ K QN E + Sbjct: 193 PNEPVALITFSVEFGEHSTFMNMCIPYLSIEKVLDKLVVQYWFQNDDEALIAESRVKMEE 252 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 ++++ + + + D + L G +I ++ + + +E Y + G G Sbjct: 253 GIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYVGDEECYYAKPGVTG 312 Query: 294 KNYTIRITDRINFD 307 KN + I D I+ + Sbjct: 313 KNMGVAILDIIDKE 326 >gi|15895484|ref|NP_348833.1| flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824] gi|15025214|gb|AAK80173.1|AE007722_2 Flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824] gi|325509631|gb|ADZ21267.1| Flagellar switch protein FliM [Clostridium acetobutylicum EA 2018] Length = 331 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 98/291 (33%), Gaps = 7/291 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 T K + + Y + + ++ +V + + + + IHS Sbjct: 40 DFTSPQKFAKEHIRTLELIHDNYSRIMSNYLTAQLRDNVKVKIETVEQITYEEFIHSVPN 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + + + + + ++ LLG + + R ++ ++K + + Sbjct: 100 PTILTIFRMPPLKGSILYETNPQFIYQAIDILLGGNG--AGKYKPREITDIDKNIIMKIN 157 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + L P +E N +E V I ++ + N + + Sbjct: 158 QGLIDNLKLAWGEVINVEPEIESLET--NPALNQTLAPHEPVALITFSVDVGNSHTYINI 215 Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 IP ++ K Q E ++ ++ + V + ++ + T++D Sbjct: 216 CIPYLSIEKILDKLVVQYWYQENDEEIVKESRVELRKRLDVVEVPVIAKLGQTEITVEDF 275 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L IG VI + + Y G +GKN I+I D+I+ D Sbjct: 276 LRLSIGDVITLNSKCSDPVPVYIYDNLHYLAAPGILGKNMGIKILDKIDKD 326 >gi|296531938|ref|ZP_06894735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] gi|296267736|gb|EFH13564.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] Length = 355 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 102/300 (34%), Gaps = 4/300 (1%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 + ++ + + + + + + +V++S S +F +++ Sbjct: 44 IEKVIARGLVSYERLPMLEIVFDRLVRIMSTSLRNFTSDNVEVSIEGITSLRFGDYLNTI 103 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAK 136 + W + + + L+ ++++ LLG T ++ R +T+E+ L + Sbjct: 104 PLPAMLVVFKAEEWDNYGLVVVDSALIYSVVDVLLGGRRGTTAMRIEGRPYTTIERGLIE 163 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 R + L+ E E + + + + +E+ Sbjct: 164 RLTEVVLKDLSDAFGPLAEVEFRFERLEV--NPRFAAISRPSNAAVLARLRVDMESRGGQ 221 Query: 197 FVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P TL + L + + A + Q V +D ++ + L D Sbjct: 222 LQLLLPYATLEPVRELLLQQFMGEKFGRDSIWETHLAEELRQTEVALDVVLDEQTMRLSD 281 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 VV L++G +I L ++ ++G +RI + + L++ + Sbjct: 282 VVRLQVGDLITLGVGPGAPVRLRCGDTSLFEGQVGGRKGRLAVRIDRAMPRQAEGLRDPV 341 >gi|168180850|ref|ZP_02615514.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC 2916] gi|182668347|gb|EDT80326.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC 2916] Length = 331 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + + P + K + + Y + + ++ +V + Sbjct: 30 EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S Q + IHS + + + + + + V +++ LLG + ++ Sbjct: 84 SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + ++K + K+ + L E +E N E V Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240 I ++ + + + IP ++ K + E E + +++ Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T+++ + L +G V+ R + L + Y + G +GKN ++I Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVALETRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319 Query: 301 TDRINFDQK 309 D+I+ D + Sbjct: 320 LDQIDKDVE 328 >gi|152984239|ref|YP_001349238.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7] gi|150959397|gb|ABR81422.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7] Length = 323 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 95/304 (31%), Gaps = 12/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ + R+ + + ++ + D++ Sbjct: 29 EATPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 Q KF +HS + + LV L++N G ++ Sbjct: 83 GVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIE 141 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E ++ + + Q L + E + E +E V Sbjct: 142 GREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMN--FEYVNSEVNPAMANIVSPSEVVVV 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242 ++ ++ + +P + + + Q+ ++Q E I + V + Sbjct: 200 STFHIELDGGGGDLHITMPYSMIEPIREMLDAGFQSDHDDQDERWIKALREDVLDVQVPL 259 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ++ L+D++ ++ G VIP ++ ANG + +LG N ++I + Sbjct: 260 GATVVRRQLKLRDILHMQPGDVIPVEMP--EHMVMRANGVPAFKVKLGAHKGNLALQIVE 317 Query: 303 RINF 306 + Sbjct: 318 AVER 321 >gi|326791530|ref|YP_004309351.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM 5427] gi|326542294|gb|ADZ84153.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM 5427] Length = 328 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 37/312 (11%), Positives = 97/312 (31%), Gaps = 13/312 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M+ + K ++ K + + Y + + + V Sbjct: 27 MQEANEQKGVKSYDFARPSKF------SKEQLRTLEIIFESYGRAISTYLSGHLRTMVSA 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + ++ +S ++ + + + + S N+ T+++ +LG S + Sbjct: 81 EVMNAEAVTYSEFSNALINPVILAVTDFRPLKGSILLELSPNMGYTIIDRVLGGSGSGLE 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R + +E+ + ++ Q +L + E P LE + NE Sbjct: 141 TI--REFTDIERVILEKIFIQFVQLLAEPWQNVVELDPMLEKIET--NSQVVQIISPNEI 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237 + + +N+ I NVA + IP + K + + + + Sbjct: 197 IALVTLNIKIGNVAGMMNICIPHLVIESIMDKLNTKFWFAQKEQELGPSYHEYIEKMIEK 256 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + I + T+++ + L ++ + + ++ G Sbjct: 257 SRIPIKAILGKTHITVREFLELSRSDIVKLDKDIDSGLDIYVGNILKFTGSPGEYKNKVA 316 Query: 298 IRITDRINFDQK 309 I+I I + + Sbjct: 317 IKINHVIQREDE 328 >gi|118588708|ref|ZP_01546116.1| flagellar motor switch protein M [Stappia aggregata IAM 12614] gi|118438694|gb|EAV45327.1| flagellar motor switch protein M [Stappia aggregata IAM 12614] Length = 412 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 101/303 (33%), Gaps = 4/303 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 ++T + L + + + + +V++S S S Sbjct: 95 EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 154 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRS 126 +F ++S + W I ++L+ ++++ LLG + ++ R Sbjct: 155 VRFGDYLNSIPLPAILGVFKAEEWDGFGLITVESSLIYSIIDVLLGGGRGTSAVRVEGRP 214 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 +T+E L ++ +A I + NLE + + + Sbjct: 215 YTTIETGLVQQMVALILQDAEHAFAPLSPVHFNLERLET--NPRFAAISRPANAAILVEL 272 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +E+ S +++P TL + L + + A + + V +D Sbjct: 273 RIDMEDRGGSVEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLATEIHAAEVEVDAV 332 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + L V++L +GQ + F ++ + LG+V + IR+ + Sbjct: 333 LYETYLPLGRVLSLDVGQTLVFDKEPTDPVMIKCGNIPLTEGTLGKVDDSIAIRVAKNLR 392 Query: 306 FDQ 308 + Sbjct: 393 KPK 395 >gi|92116939|ref|YP_576668.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14] gi|91799833|gb|ABE62208.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14] Length = 401 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 102/295 (34%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +F Sbjct: 88 DNSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 147 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V S W + ++L+ ++++ LLG +T ++ R +T+E Sbjct: 148 MNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIET 207 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR + + A Q + +++ + + + + +E+ Sbjct: 208 NLVKRLVEVVLADAEQAFRPLSPVTFSIDRLET--NPRFAAITRPANAAILVRLRIDMED 265 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + L + + A + Q + +D + + Sbjct: 266 RGGTIELLLPYATIEPIRNVLLQMFMGEKFGRDPIWESHLATEIAQAQIAVDAVLYEAEI 325 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK ++ LK+G +P R + + +GRVG IR++ + Sbjct: 326 PLKQLMALKVGDTLPLDMRPDASVAVRCGSVTLTEGRMGRVGDRVAIRVSRHLRK 380 >gi|152997440|ref|YP_001342275.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1] gi|150838364|gb|ABR72340.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1] Length = 324 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 91/273 (33%), Gaps = 6/273 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D+S Q KF +H+ + Sbjct: 49 RMPTLEMINERFARYTRISLFNMLRRTADVSSGGLQVMKFGEYVHTLYVPTSLNLVKFRP 108 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 S LV L++N G ++ R + E ++ + + Q+ L + Sbjct: 109 LRSTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFKDLTEAW 167 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + + LE +E V ++ ++ + +P + Sbjct: 168 APVLKLE--LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVR 225 Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ + + + + ++V + + +K +L +V+ K G +IP Sbjct: 226 ELLDAGVQSDVDEKDDRWGKSLEQDVKDIDVRLSVSVANRKISLGEVLKFKAGDIIPIEM 285 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ANG + +LG + Y++++ + Sbjct: 286 P--EFVTVRANGVPTFKGKLGVSNERYSVQMQE 316 >gi|328543159|ref|YP_004303268.1| flagellar motor switch protein FliM [polymorphum gilvum SL003B-26A1] gi|326412905|gb|ADZ69968.1| Flagellar motor switch protein FliM [Polymorphum gilvum SL003B-26A1] Length = 411 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 100/297 (33%), Gaps = 4/297 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 ++T + L + + + + +V++S S S Sbjct: 94 EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 153 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL-GASHETIPQLYNRS 126 +F ++S + W + ++L+ ++++ LL G T ++ R Sbjct: 154 VRFGDYLNSIPLPAILGVFKAEEWDGFGLVTVESSLIYSIIDVLLGGGRGTTAVRVEGRP 213 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 +T+E L +R + I A Q + NLE + + + Sbjct: 214 YTTIETNLVRRMVEIILADAEQAFAPLSPVHFNLERLET--NPRFAAISRPANAAILVEL 271 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +E+ + +++P TL + L + + A + + + +D Sbjct: 272 RIDMEDRGGTIEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLASEIHAAEIEVDAV 331 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + L V++L +GQ + F + + LG+V + IR+T Sbjct: 332 LYETHLPLGRVLSLDVGQTLIFDVDPHDPITIKCGNVPLTEGTLGKVEDSIAIRVTR 388 >gi|15964406|ref|NP_384759.1| flagellar motor switch transmembrane protein [Sinorhizobium meliloti 1021] gi|307318903|ref|ZP_07598334.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti AK83] gi|17380372|sp|O54246|FLIM_RHIME RecName: Full=Flagellar motor switch protein FliM gi|15073583|emb|CAC45225.1| Flagellar motor switch transmembrane protein [Sinorhizobium meliloti 1021] gi|306895317|gb|EFN26072.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti AK83] Length = 315 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 92/312 (29%), Positives = 158/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I + Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 342 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 102/283 (36%), Gaps = 7/283 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K + + + + L F + V + S + + I S + V + Sbjct: 50 KDQLRAIQMIHEFFSRQLTTAFSSFVRTMVSVEVASVEQLSYDEFIKSLVQPTVIVVMEM 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 SSN + + LV +++ +LG + +T + R L+ +E+ + +R + ++ +L + Sbjct: 110 YPLSSNALLEINPRLVFAIIDRMLGGAGKTTYK--ARELTDIERTVTERVVMRMLELLEE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 +T + +++ +++ V I + + I +V + IP + Sbjct: 168 SWATIVDLRFRIQN--MESNPYFAQICPASDVVVVITLQVKIGDVDGFINICIPYFAIEP 225 Query: 209 TTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + + ++ V + I LKD++ L++G VI Sbjct: 226 VIDQLSSQRWFVSTGSREDDASQERIIERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVI 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + + G ++++I ++ Sbjct: 286 KLEETYSEPVKVRVGERVKFLGHAGIYNNKHSVQIIKTFISEK 328 >gi|15596640|ref|NP_250134.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1] gi|107100877|ref|ZP_01364795.1| hypothetical protein PaerPA_01001907 [Pseudomonas aeruginosa PACS2] gi|116049388|ref|YP_791809.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa UCBPP-PA14] gi|218892684|ref|YP_002441553.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58] gi|254234542|ref|ZP_04927865.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719] gi|254239793|ref|ZP_04933115.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192] gi|296390190|ref|ZP_06879665.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAb1] gi|313106442|ref|ZP_07792673.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016] gi|12230925|sp|Q51465|FLIM_PSEAE RecName: Full=Flagellar motor switch protein FliM gi|9947394|gb|AAG04832.1|AE004574_3 flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1] gi|115584609|gb|ABJ10624.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa UCBPP-PA14] gi|126166473|gb|EAZ51984.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719] gi|126193171|gb|EAZ57234.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192] gi|218772912|emb|CAW28724.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58] gi|310879175|gb|EFQ37769.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016] Length = 323 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 95/304 (31%), Gaps = 12/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ + R+ + + ++ + D++ Sbjct: 29 EATPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVG 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 Q KF +HS + + LV L++N G ++ Sbjct: 83 GVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIE 141 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E ++ + + Q L + E + E +E V Sbjct: 142 GREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMN--FEYVNSEVNPAMANIVSPSEVVVV 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242 ++ ++ + +P + + + Q+ ++Q E I + V + Sbjct: 200 STFHIELDGGGGDLHITMPYSMIEPIREMLDAGFQSDHDDQDERWIKALREDVLDVQVPL 259 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ++ L+D++ ++ G VIP ++ ANG + +LG N ++I + Sbjct: 260 GATVVRRQLKLRDILHMQPGDVIPVEMP--EHMVMRANGVPAFKVKLGAHKGNLALQILE 317 Query: 303 RINF 306 + Sbjct: 318 AVER 321 >gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88] gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88] Length = 332 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 97/285 (34%), Gaps = 6/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + Y + + M ++ S Q + IHS V + Sbjct: 48 SKDHIRTLELIHDNYARIMSNYLTAHMRKNIKAKIESVQQITYEEFIHSIPNPTVLTVFK 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + V +++ LLG + E + R + ++K + K+ + + Sbjct: 108 APPLNGTVLFETNPKFVFEVMDVLLGGNAEG-REYKLREFTDIDKNIIKQVNEGLIEGIK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 E P +E N NE V I ++ + ++ + IP ++ Sbjct: 167 LAWEDILELYPEIESIET--NPALNQTLAPNEPVALITFSVDMGKSSTFINICIPYLSIE 224 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 K Q +E E+ + + + + K T+++ + L +G V Sbjct: 225 KILDKLVIQYWFQENNEAVREESNKQLRDRINIVETELVAVLGGAKITVEEFLRLSLGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + ++ ++ + + G V KN I+I D ++ D + Sbjct: 285 LILDNQIDKPISINVENQLYAYGKPGVVDKNMGIQILDILDKDVE 329 >gi|327481259|gb|AEA84569.1| flagellar motor switch protein FliM [Pseudomonas stutzeri DSM 4166] Length = 323 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 93/275 (33%), Gaps = 6/275 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D+S Q KF +HS + + Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 109 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 LV L++N G ++ R + E ++ + + Q A L + Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAW 168 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + + E +E V ++ +++ + +P + Sbjct: 169 HAVLDVN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIR 226 Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ +Q E + +NV + + ++ L+D++ ++ G VIP Sbjct: 227 EMLDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEM 286 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E I+ ANG + +LG N +++ + + Sbjct: 287 PED--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 319 >gi|88800464|ref|ZP_01116028.1| flagellar motor switch protein FliM [Reinekea sp. MED297] gi|88776794|gb|EAR08005.1| flagellar motor switch protein FliM [Reinekea sp. MED297] Length = 360 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 36/315 (11%), Positives = 98/315 (31%), Gaps = 12/315 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + + R+ + + ++ + D++ Sbjct: 27 GADAEGVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNFLRRSADVATG 80 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 Q KF +H+ + + LV L++N G ++ Sbjct: 81 GIQILKFGEYVHTLYVPTSLNLVKVRPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIE 139 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E ++ + ++Q+ + + + E +E V Sbjct: 140 GREFTPTEIRVVQMILSQVFQDMKEAWGAVLDVD--FEYMSSEVNPAMANIVSPSEVVVV 197 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 ++ ++ + +P + + + Q+ + E ++ V Sbjct: 198 STFHIELDGGGGDLHMTLPYSMIEPVRDVLDAGVQSDVDEIDERWVESLRHDILGAKVPT 257 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + ++ L+++V L+ G VIP +ANG ++ +LG+ G N +R+ Sbjct: 258 NAVVAEREIKLRELVDLQAGDVIPIDLP--ETIKFTANGIPLFETKLGQCGDNLALRVER 315 Query: 303 RINFDQKSLKNFLHK 317 + + + + + Sbjct: 316 PVRKMSRDIGDMKTR 330 >gi|307311548|ref|ZP_07591189.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti BL225C] gi|306899565|gb|EFN30194.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti BL225C] Length = 315 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 92/312 (29%), Positives = 158/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I + Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERGKPDPVLQDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC 27405] gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 2360] gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20] gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC 27405] gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 2360] gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20] gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 1313] Length = 328 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 92/294 (31%), Gaps = 7/294 (2%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 K + + + Y + + + V + S + + +S Sbjct: 39 HDFRRPSKFAKDHVRTLNVIHDNYARIITNFLSGYLRTLVQVEVISVEPIAYYEFNNSIS 98 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 V + + + + + + + L++ +LG I ++ R + VE + +R Sbjct: 99 NPAVLAVIDFAPLTGSIILEMAPPVAYALIDRILGGKGLPIERV--REFTEVEIAIIERI 156 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 I Q+ ++ + E P LE + +NE V I + I V Sbjct: 157 IIQLVNLMREPWENVVELKPRLEKIET--NAQFAQIVSANETVALITLGAKIGEVEGMIN 214 Query: 199 LIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L IP + + + +++ + +K V + + + D Sbjct: 215 LCIPHIVVEPIVSKLNTKFWFSSVEKEATKEDKETIQKKIEYTKVPVRAILGRATIQVAD 274 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + L+ G VI + + G I+IT+ I + + Sbjct: 275 FLELQPGDVITLDSNVNGNLDVLVGDLLKFRGSPGVKKNRNAIKITEVIRREDE 328 >gi|188588470|ref|YP_001920165.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str. Alaska E43] gi|251780168|ref|ZP_04823088.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498751|gb|ACD51887.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str. Alaska E43] gi|243084483|gb|EES50373.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 331 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 44/314 (14%), Positives = 105/314 (33%), Gaps = 11/314 (3%) Query: 1 MRGQSIHKNTSPLHPIL----LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL 56 + + T P L K + + + + ++ Sbjct: 17 LSTGELEPETVPKDDEKHKIKLYDFKSPQKFSKDHIRTLELIHDNFARITSNYLTGQIRK 76 Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V + + + + IHS + + + + + + + L +++ LLG S Sbjct: 77 NVKVKIETVEQITYEEFIHSVQNPTIITIFKMPPLTGSIIFETNPQLSFQIIDILLGGSG 136 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + ++ N+ S ++K + ++ + + L SP +E N Sbjct: 137 DR--KIGNKEFSDIDKNIIRQVTTGMISNLKLAWEDILNVSPEVEGIET--NPAINQTLA 192 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFAR 233 NE V I ++ ++ + IP ++ K QN E + Sbjct: 193 PNEPVALITFSVEFGEHSTFMNMCIPYLSIEKVLDKLVVQYWFQNDDEALIAESRVKMEE 252 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 ++++ + + + D + L G +I ++ + + +E Y + G G Sbjct: 253 GIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYVGDEECYYAKPGVTG 312 Query: 294 KNYTIRITDRINFD 307 KN + I D I+ + Sbjct: 313 KNMGVAILDIIDKE 326 >gi|307945662|ref|ZP_07660998.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4] gi|307771535|gb|EFO30760.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4] Length = 410 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 98/303 (32%), Gaps = 4/303 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 ++T + L + + + + +V++S S S Sbjct: 92 EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 151 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL-GASHETIPQLYNRS 126 +F ++S + W I ++L+ ++++ LL G T ++ R Sbjct: 152 VRFGDYLNSIPLPAILGVFKAEEWDGFGMITVESSLIYSIIDVLLGGGRGATAVRVEGRP 211 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 +T+E L ++ ++ I Q + +E + + + Sbjct: 212 YTTIETNLVQQMVSLILQDAEQAFAPLSPVHFTMERLET--NPRFAAISRPANAAILVEL 269 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +E+ + +++P TL + L + + A + + V +D Sbjct: 270 RIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLATEVHAAEVEVDAV 329 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + L V+ L +GQ + F L + +G+ I++T + Sbjct: 330 LYETHLPLGRVMNLDVGQTLVFDIEPTDPVTLKCGNVPLTEGTMGKAEDAIAIQVTKNLR 389 Query: 306 FDQ 308 + Sbjct: 390 KPK 392 >gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM 1740] gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes] Length = 354 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 98/304 (32%), Gaps = 6/304 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + L K + + + L M V+I S + + Sbjct: 37 VTLYDFKRPNRVSKEQLRAFRGIHDKMARNLSSQISAIMRSIVEIQLHSVDQMTYGEFLM 96 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 S F+ S+ + + ++ +++ LLG + R S +E L Sbjct: 97 SLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYE--ATREFSDIELNLL 154 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + Q+ L + + E P+++ + NE V + M + I + + Sbjct: 155 DTILRQMMQNLKEAWAPVAEIFPSVDAKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSG 212 Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 L P +L S + + VNI + L Sbjct: 213 MMNLCYPVISLESVLSRLASRDLMLSETSSKKSRNRELQALLGGAAVNISAVLGGTSLDL 272 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 K+V+ L +G ++ I++ +G+E Y +G T++I + I ++ +K Sbjct: 273 KEVLELGVGDIVRLDRPADDTVIVNVDGREKYIATIGLQRYRKTVKIKEVIKTEKDQVKE 332 Query: 314 FLHK 317 L Sbjct: 333 ILEM 336 >gi|90021820|ref|YP_527647.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40] gi|89951420|gb|ABD81435.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40] Length = 333 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 100/299 (33%), Gaps = 12/299 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 R+ + + ++ + D+S Q Sbjct: 32 GVRAYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRTADVSVGGIQIQ 85 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +H+ + I LV L++N G ++ R + Sbjct: 86 KFGEYVHTLYVPTSLNMVKFRPLRGTALIILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 144 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ + + Q+ L + + E +E V ++ Sbjct: 145 PTELRVVQMVLEQVFIDLKEAWKAVKAID--FEYINSEVNPSMANIVSPSEVVVVSTFHV 202 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++ + +P + + + Q+ ++ + + + + V+++ + Sbjct: 203 ELDGGGGELHITMPYSMVEPIREVLDAGLQSDTDERDDRWVRALQEDVMEARVDLEADLV 262 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ TL+D+V L+ G +IP E IL+ANG ++ +LG++ N +RI ++ Sbjct: 263 RREVTLRDIVDLREGDIIPITMPEYN--ILTANGVPMFKTQLGQLNDNLAMRILGFVDR 319 >gi|86750893|ref|YP_487389.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris HaA2] gi|86573921|gb|ABD08478.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris HaA2] Length = 401 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 105/295 (35%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +FS Sbjct: 88 ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDY 147 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V W + ++L+ ++++ LLG + ++ R +T+E Sbjct: 148 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAAIRIEGRPYTTIET 207 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR + + A Q + +++ + + +++ +E+ Sbjct: 208 NLVKRLLEVVLADAEQAFRPLSPVAFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 265 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + + + + + A + Q ++++D + + Sbjct: 266 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEIGQADISVDAVLYEAEV 325 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+ ++ L++G +P R + + +GRVG IR+T + Sbjct: 326 PLRQLMALQVGDTLPLDLRADALVAVRCGSVTLTEGRMGRVGDRVAIRVTKPLRK 380 >gi|304316897|ref|YP_003852042.1| flagellar motor switch protein FliM [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778399|gb|ADL68958.1| flagellar motor switch protein FliM [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 329 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 39/310 (12%), Positives = 94/310 (30%), Gaps = 11/310 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++ P + K + + + + V + Sbjct: 27 IKESQQETRIKPYDFRRPNKF------SKEQLRTLQMIFENMSRSFTTFLSGYLRTLVQV 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S S + + +S + + +NN T+++ +LG Sbjct: 81 SIVSVEQITYYEFSNSLTNPVFIAVIDAKPLDGPIILEFNNNTTFTIIDKILGGIGTADT 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R + +E L R Q+ ++ E +P + + + NE Sbjct: 141 V--ERDYTEIEMGLLSRITTQLLPLIKDAWINVIELNPEITRIET--NSQFSQIISPNET 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLN 239 + M++ I + +P T++ + + S + + I K Sbjct: 197 IALCTMSLKINDNEGLINFCLPHITIVPILPLLTTKTWFSNAEKQSCDIGIIKDKISNTY 256 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + I + K T++D++ G ++ + K + N + + G K Y ++ Sbjct: 257 IPLKAVIGMSKITVRDLLNFNKGDILEINKKYKDPIEIKINDETKFLGVPGIKNKKYCVQ 316 Query: 300 ITDRINFDQK 309 IT+ + Sbjct: 317 ITEICSEGDD 326 >gi|39936958|ref|NP_949234.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris CGA009] gi|192292786|ref|YP_001993391.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris TIE-1] gi|39650815|emb|CAE29338.1| possible flagellar motor switch protein FliM [Rhodopseudomonas palustris CGA009] gi|192286535|gb|ACF02916.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris TIE-1] Length = 400 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 104/295 (35%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +F Sbjct: 87 ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V W + ++L+ ++++ LLG + ++ R +T+E Sbjct: 147 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAALRIEGRPYTTIET 206 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR + + A Q S +++ + + +++ +E+ Sbjct: 207 NLVKRLLEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 264 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + + + + + A + Q ++++D + + Sbjct: 265 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEIVQADISVDAVLYEAEL 324 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+ ++ L++G +P R + + +GRVG IR+T + Sbjct: 325 PLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEGRMGRVGDRVAIRVTKPLRK 379 >gi|237753388|ref|ZP_04583868.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC BAA-430] gi|229375655|gb|EEO25746.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC BAA-430] Length = 352 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 96/292 (32%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L M V+I S + + S F+ S Sbjct: 50 SKEQLRAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + ++ +++ LLG + R S +E L + Q+ L Sbjct: 110 MKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYEST--REFSDIELNLLDTILRQMMQNLK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + E P ++ + NE V + M + I + + L P +L Sbjct: 168 EAWAPITEIFPTVDVKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLE 225 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 S + + VN+ + K ++ +++ L++G ++ Sbjct: 226 SVLSRLASRDIMLSETSAKKSRNKELQALLGGAKVNVAAVLGETKLSMHEILDLEVGDIV 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 I++ +G+E + +G TI + + I ++ +K L Sbjct: 286 RLDRPADDTVIINVDGREKFLASIGLHRYRKTIEVKEMIKTEKDQVKEILEM 337 >gi|170747253|ref|YP_001753513.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] gi|170653775|gb|ACB22830.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] Length = 404 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 101/285 (35%), Gaps = 4/285 (1%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 + + + L + +V+++ + S +F +++ + Sbjct: 110 ERLPMLEIVFDRMIRLLSTSLRNLFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFRAE 169 Query: 90 SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 W ++ + +NL + LLG + +L R + +E L +R + + L Sbjct: 170 QWENSGLVTVDSNLAYATFDLLLGGKRGGSSSRLDGRPFTAIEMTLVRRLVEIVLGDLEM 229 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S ++ + T I++ + ++ ++ P T+ Sbjct: 230 SFQPLSPVSFGIDRIET--NPRFATITRPGNAAILISLRLDVDGRGGMLQILFPYATIEP 287 Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + S + + A + +Q +V +D ++ LK V++LK+G+ + F Sbjct: 288 IRELLTQSFMGEKLGRDHVWEGHLATEIWQADVTMDAVLHEMMLPLKQVMSLKVGETLMF 347 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + + + +GRV + +++T + + +++ Sbjct: 348 DAKPSDLITVRCGDWALTQGRIGRVDGHIAVQVTRPLRRSRTTIQ 392 >gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT 98-5489] gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT 98-5489] Length = 352 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 99/304 (32%), Gaps = 6/304 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + L K + + + L M V+I S + + Sbjct: 38 VTLYDFKRPNRVSKEQLRAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLM 97 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 S F+ S+ + + ++ +++ LLG + R S +E L Sbjct: 98 SLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYEST--REFSDIELNLL 155 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + Q+ L + + E PN++ + NE V + M + I + + Sbjct: 156 DTILRQMMQNLKEAWAPITEIFPNVDVKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSG 213 Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 L P +L S + + VN+ + K TL Sbjct: 214 MMNLCYPVISLESVLSRLASRDIMLSETSSKKSRNKELQALLGGAKVNVTAMLGETKLTL 273 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 ++++ L+ G ++ I++ +G+E + +G TI + + I ++ +K Sbjct: 274 REILELESGDIVRLDRPADDTVIINVDGREKFLASIGLHRYRKTIEVKEMIKTEKDQVKE 333 Query: 314 FLHK 317 L Sbjct: 334 ILEM 337 >gi|331006682|ref|ZP_08329960.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC1989] gi|330419514|gb|EGG93902.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC1989] Length = 340 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 99/308 (32%), Gaps = 12/308 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 G + S R+ + + ++ + D+S Sbjct: 25 SGDTSAGGVSSYDLTTQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRTADVS 78 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 KF +H+ + + LV L++N G + Sbjct: 79 VGGINIQKFGEYVHTLYVPTSLNMVKFRPLRGTALVVFDAKLVFKLVDNFFGGDGR-HAK 137 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E ++ + + Q + + E +E V Sbjct: 138 IEGREFTPTELRVVRMVLEQAFIDMKEAWRAVLPID--FEHVNSEVNPSMANIVSPSEVV 195 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240 + ++ ++ + IP + + + Q+ S+ + + ++ Q NV Sbjct: 196 VVSSFHVELDGGGGEMHITIPYSMIEPIREMLDAGLQSDSDERDDRWVNSLREDIMQANV 255 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 +DT K LKD+V LK G VIP I +ANG ++ ++G+ N+ +++ Sbjct: 256 RLDTNFVQSKILLKDIVDLKEGDVIPIELP--EEYITNANGVPMFKVDIGQSNGNFALKV 313 Query: 301 TDRINFDQ 308 + I + Sbjct: 314 NEVIERTK 321 >gi|254504876|ref|ZP_05117027.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11] gi|222440947|gb|EEE47626.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11] Length = 412 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 101/303 (33%), Gaps = 4/303 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 ++T + L + + + + +V++S S S Sbjct: 95 EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 154 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL-GASHETIPQLYNRS 126 +F ++S + + W I ++L+ ++++ LL G T ++ R Sbjct: 155 VRFGDYLNSIPLPAILGVFKVEEWDGFGLITVESSLIYSIIDVLLGGGRGTTAARVEGRP 214 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 +T+E L ++ + I Q + NLE + + + Sbjct: 215 YTTIETNLVQQMVQLILQDAEQAFAPLSPVHFNLERLET--NPRFAAISRPANAAILVEL 272 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +E+ + +++P TL + L + + A + + + +D Sbjct: 273 RIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLATEIHAAEIEVDAV 332 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + L V++L +GQ + F ++ + LG+ + IR+ + Sbjct: 333 LYETYLPLGRVLSLDVGQTLVFDVAPTDPVLVKCGNIPLTEGTLGKTEDSIAIRVAKNLR 392 Query: 306 FDQ 308 + Sbjct: 393 KPK 395 >gi|316932826|ref|YP_004107808.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris DX-1] gi|315600540|gb|ADU43075.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris DX-1] Length = 400 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 104/295 (35%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +F Sbjct: 87 ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V W + ++L+ ++++ LLG + ++ R +T+E Sbjct: 147 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAALRIEGRPYTTIET 206 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR + + A Q S +++ + + +++ +E+ Sbjct: 207 NLVKRLLEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 264 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + + + + + A + Q ++++D + + Sbjct: 265 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEIVQADISVDAVLYEAEL 324 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+ ++ L++G +P R + + +GRVG IR+T + Sbjct: 325 PLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEGRMGRVGDRVAIRVTKPLRR 379 >gi|188582489|ref|YP_001925934.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] gi|179345987|gb|ACB81399.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] Length = 405 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 97/285 (34%), Gaps = 4/285 (1%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 + + + L + +V+++ + S +F +++ + Sbjct: 111 ERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKAD 170 Query: 90 SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 SW + + L + ++ LLG + +L R +T+E L +R + I L Sbjct: 171 SWEGSGLVTVEQTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLEM 230 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ++ + T I + + ++ ++ P T+ Sbjct: 231 SFQPLSPVRFGIDRIET--NPRFATITRPGNAAILITLKLDMDGRGGGMQILFPYATVEP 288 Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + S + + + A + +Q +V ++ ++ LK V+ LK+G + F Sbjct: 289 IRDLLMQSFMGERLGRDQVWESHLATEIWQADVEMEAVLHEVTLPLKRVLNLKVGDTLMF 348 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + + + +GR+ +++ + + +L+ Sbjct: 349 DRKPSDLITVRCGDWALTQGRIGRIDDAIAVQVARPLRQSRTTLQ 393 >gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM 1251] gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM 1251] Length = 372 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 101/303 (33%), Gaps = 6/303 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + L K + + + L M V+I S + + Sbjct: 41 VTLYDFKRPNRVSKEQLRAFKGIHDKMARSLSSQISSIMRSIVEIQLHSVDQMTYGEFLM 100 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 S F+ S+ + I + ++ +L+ LLG E +R S +E L Sbjct: 101 SLPNPTSFNVFSMKPLEGSGVIEINPSIAFPMLDRLLGGKGEPFD--ASREFSDIELSLF 158 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + + + + L E PN+E + NE V + M + I + Sbjct: 159 ETILRVMMSTLKDAWGPVMEIFPNIESKESSPNV--VQIVAQNEIVVMVVMEIIIGQSSG 216 Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + P L S + + V I+ + + TL Sbjct: 217 MMNICYPVIALEPVLPKLASRDLMLNETSTKKSRNTELHVLLGGAKVGIEAMLGNAELTL 276 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +DV+ L+ G ++ + +GK+ + ++G ++++T+ I+ ++ ++K Sbjct: 277 RDVLDLQAGDIVRLTSPADDIVTICVDGKDRFRGKIGLRRFRKSVQVTEIIDTERDAVKR 336 Query: 314 FLH 316 L Sbjct: 337 ALE 339 >gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM 4359] gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM 4359] Length = 328 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 99/301 (32%), Gaps = 15/301 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + K P ++ K + + + + L ++ VD+ Sbjct: 30 EEGEKKVKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI- 82 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S + I S + + + +L T+L+ ++G Sbjct: 83 SIDQLTYEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTILDIIMGGPG---DNPP 139 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 NR+ + +E + +R + I +L Q S Q P++E+ + NE V Sbjct: 140 NRTPTDIETSIMRREVTNILTLLAQAWSDFQYFIPSIENIET--NPQFVQIVPPNEIVLL 197 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNV 240 + +++ S + P L + + E+ ++ + + + Sbjct: 198 VTASVSWGEFTSFINVCWPFSLLEPFLEKLSNRFWMMGRKPERIEERVEELKVASQSVPL 257 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + I TL++V+ L+ G VI K + GK + G+ Y ++I Sbjct: 258 TVQAVIGEAWLTLREVLNLQEGDVIRLNTHYKDEIRIDVEGKPKFRGIPGKYKGKYAVKI 317 Query: 301 T 301 T Sbjct: 318 T 318 >gi|258511384|ref|YP_003184818.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478110|gb|ACV58429.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 331 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 41/314 (13%), Positives = 101/314 (32%), Gaps = 18/314 (5%) Query: 10 TSPLHPILLAR-----------LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58 T + P R + K ++ + + + L ++ Sbjct: 19 TGEIDPAAEQRANAHPRVRVYDFRRAMRFSKDHLRVLRRMHEHFCRLLTSQLSGQLRSVP 78 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 I S + I S V + + + +V +L+ +G Sbjct: 79 QIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLEGRMVMEMNPQVVFAMLDKYMGGDSAG 138 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R L+ +E L +R + ++L + + + P + N Sbjct: 139 PYRV--RELTDIEVSLFRRLFENVPSILAEAWKSVIDLDPQFVSLE--SNPQFLQLTTPN 194 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLI-DPFARKT 235 E V + +++ + L IP T+ + + + + D K Sbjct: 195 ETVLVVTISVRVGETTGLINLCIPHVTIEPVLSKLSNRYYMDPAFQSGRRQVNDELRAKL 254 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V++ + + T+++V+ L G I + A++ +G+ + +G+ + Sbjct: 255 LSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSVGKRNRV 314 Query: 296 YTIRITDRINFDQK 309 Y ++I + D Sbjct: 315 YAVKIVGQWEADAD 328 >gi|296103632|ref|YP_003613778.1| Flagellar motor switch protein fliM [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058091|gb|ADF62829.1| Flagellar motor switch protein fliM [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 330 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 10/301 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 P P R+ + + + + + DI+ + + Sbjct: 31 DAGIKPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAGNIK 84 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 + + + L+ + S LV ++NL G + R Sbjct: 85 IQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGLVFMAVDNLFGGDGRFPTKADGRE 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E+++ R ++ S+ + I N N+ V T Sbjct: 145 FTPTEQRVIHRMLSMAREAYEFAWSSIYKIKTEYIRSE-IQVKFTNITSSPNDVVVTTPF 203 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ I + F + IP T+ + + + S ++ A + + + + R Sbjct: 204 SVEIGSHRGEFNICIPFSTIEPLRELLSNPPMDNSRHEDSHWRGLLASQMRETELELTAR 263 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 T L V+ +K G +I + S G +++ G V Y +++ I Sbjct: 264 FADIGTRLSRVMQMKKGDIIALDK--QEFIEASVGGVPVFTARYGAVNNQYALKVEQMIQ 321 Query: 306 F 306 Sbjct: 322 P 322 >gi|281411906|ref|YP_003345985.1| flagellar motor switch protein FliM [Thermotoga naphthophila RKU-10] gi|281373009|gb|ADA66571.1| flagellar motor switch protein FliM [Thermotoga naphthophila RKU-10] Length = 328 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 99/297 (33%), Gaps = 15/297 (5%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K P ++ K + + + + L ++ VD+ S Sbjct: 34 KKVKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQ 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + I S + + + +L T+L+ ++G NR Sbjct: 87 LTYEEFIRSVMIPSFIVIFTGDIFEGSAIFEMRLDLFYTMLDIIMGGPG---DNPPNRPP 143 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + +E + ++ + + +L Q S Q P++E+ + NE V + + Sbjct: 144 TEIETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTAS 201 Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ S + P L + + E+ I+ + + ++ V + Sbjct: 202 VSWGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPERVEERIEELKKASQKVPVTVQA 261 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 I + LK+++ L++G VI K + G+ + G Y +++T Sbjct: 262 VIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVT 318 >gi|91976164|ref|YP_568823.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB5] gi|91682620|gb|ABE38922.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB5] Length = 400 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 103/295 (34%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +F Sbjct: 87 ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V W + ++L+ ++++ LLG + ++ R +T+E Sbjct: 147 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAALRIEGRPYTTIET 206 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR + + A Q + +++ + + +++ +E+ Sbjct: 207 NLVKRLLQVVLADAEQAFRPLSPVAFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 264 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + + + + + A + Q +++D + + Sbjct: 265 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEVVQAEISVDAVLYEAEV 324 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK ++ L++G +P R + + +GRVG IR+T + Sbjct: 325 PLKQLMALQVGDTLPLDLRADALVAVRCGSVTLTEGRMGRVGDRVAIRVTKPLRR 379 >gi|149194333|ref|ZP_01871430.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2] gi|149135508|gb|EDM23987.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2] Length = 356 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 97/304 (31%), Gaps = 6/304 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + L K + ++ + L M V+I S + + Sbjct: 39 VTLYDFKRPNRVSKEQLRSIRAIHDKMVRNLASDISSLMRSIVEIHLHSVDQMTYGEFLM 98 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 S F+ SL I + ++V +++ LLG R + +E L Sbjct: 99 SLPSPTSFNVFSLKPLDGKGVIELNPSIVFPMIDRLLGGPGLPFENT--REFTDIELNLL 156 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + + I+ + + + E P +E + NE V I M + I + Sbjct: 157 DQILRTITQNMKEAWAPIMEMYPVIEAKESSPNV--VQIVAQNEIVVMIVMEIVIGQTSG 214 Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + P T+ S + + V ++ + T+ Sbjct: 215 MMNICYPVITIESLLPKLASRDLMLSETSSRKSRNKELRALLGGAKVELEAVLGYANLTM 274 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 ++++ L +G +I ++ +G+E + + G I+I + + + +K Sbjct: 275 QEILDLVVGDIIKLNRPADDTVVVKVDGREKFIADFGIKRFRRAIKIREILKTEHDEVKE 334 Query: 314 FLHK 317 L K Sbjct: 335 ILSK 338 >gi|187778682|ref|ZP_02995155.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC 15579] gi|187772307|gb|EDU36109.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC 15579] Length = 331 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 104/309 (33%), Gaps = 13/309 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + + P + K + + Y + + ++ +V + Sbjct: 30 EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S Q + IHS + + + + + + V +++ LLG + ++ Sbjct: 84 SVQQITYEEFIHSVPNPTILTIFKMPPLNGSVLFETNPQFVFQMIDVLLGGNGNGNYKM- 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + ++K + K+ + L E +E N E V Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240 I ++ + + + IP ++ K + E E+ + +++ Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEESSSKIKERINIVSM 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T++D + L +G V+ + + L + Y + G +GKN ++I Sbjct: 260 ELTAELGRTSVTVEDFLRLSVGDVVALDTKTEEPVHLLIEKEPGYYAKPGVIGKNIGLQI 319 Query: 301 TDRINFDQK 309 D+I+ D + Sbjct: 320 LDQIDKDVE 328 >gi|163852467|ref|YP_001640510.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|218531223|ref|YP_002422039.1| flagellar motor switch protein FliM [Methylobacterium chloromethanicum CM4] gi|240139804|ref|YP_002964281.1| flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|254562219|ref|YP_003069314.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] gi|163664072|gb|ABY31439.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|218523526|gb|ACK84111.1| flagellar motor switch protein FliM [Methylobacterium chloromethanicum CM4] gi|240009778|gb|ACS41004.1| flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|254269497|emb|CAX25463.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] Length = 406 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 98/285 (34%), Gaps = 4/285 (1%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 + + + L + +V+++ + S +F +++ + Sbjct: 112 ERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKAD 171 Query: 90 SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 +W + + L + ++ LLG + +L R +T+E L +R + I L Sbjct: 172 AWEGSGLVTVEQTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLEL 231 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ++ + T I + + ++ ++ P T+ Sbjct: 232 SFQPLSPVRFGIDRIET--NPRFATITRPGNAAILITLKLDMDGRGGGMQILFPYATVEP 289 Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + S + + + A + +Q +V+++ ++ LK V+ LK+G + F Sbjct: 290 IRDLLMQSFMGERLGRDQVWESHLATEIWQADVDMEAVLHEVTLPLKRVLNLKVGDTLMF 349 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + + + +GR+ ++I + + +L+ Sbjct: 350 DRKPSDLITVRCGDWALTQGRIGRIDDAIAVQIARPLRQSRTTLQ 394 >gi|254519440|ref|ZP_05131496.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA] gi|226913189|gb|EEH98390.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA] Length = 331 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 96/283 (33%), Gaps = 7/283 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + + ++ V + S + + +HS + + Sbjct: 48 SKDHIRTLEMVHDAFARIISNYLSGQLRKHVKVDIQSVEQITYEEFVHSIANPTILTIFK 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + +L+ LLG + + + + S ++K + +++ L Sbjct: 108 MPPLQGNILLEMNPQFSFQILDILLGGTGDRDEK--AKEFSEIDKNILANITSEMIKSLI 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 E P E N NE V ++ + + + L IP ++ Sbjct: 166 LAWDGILEVKPEFEGLET--NPSANQTLAPNEPVALLSFLVELGKSTTYMNLCIPYLSVE 223 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 K + ++ + + + VN+ + + T+ D + L G V Sbjct: 224 KVLDKLVVQYWFKTDESELEDEAREKLKKGLDPVKVNMHVELGKTEITVDDFLELVNGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + + +E + + G VGKN I++ D ++ D Sbjct: 284 LVLNSQYSDPVRVFVENEECFIAKPGIVGKNMGIQLLDILDKD 326 >gi|218288306|ref|ZP_03492605.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius LAA1] gi|218241665|gb|EED08838.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius LAA1] Length = 331 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 41/314 (13%), Positives = 101/314 (32%), Gaps = 18/314 (5%) Query: 10 TSPLHPILLAR-----------LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58 T + P R + K ++ + + + L ++ Sbjct: 19 TGEIDPAAEQRANAHPRVRVYDFRRAMRFSKDHLRVLRRMYEHFCRLLTSQLSGQLRSVP 78 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 I S + I S V + + + +V +L+ +G Sbjct: 79 QIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLEGRMVMEMNPQVVFAMLDKYMGGDSAG 138 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R L+ +E L +R + ++L + + + P + N Sbjct: 139 PYRV--RELTDIEVSLFRRLFENVPSILAEAWKSVIDLDPQFVSLE--SNPQFLQLTTPN 194 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLI-DPFARKT 235 E V + +++ + L IP T+ + + + + D K Sbjct: 195 ETVLVVTISVRVGETTGLINLCIPHVTIEPVLSKLSNRYYMDPAFQSGRRQVNDELRAKL 254 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V++ + + T+++V+ L G I + A++ +G+ + +G+ + Sbjct: 255 LSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSVGKRNRV 314 Query: 296 YTIRITDRINFDQK 309 Y ++I + D Sbjct: 315 YAVKIVGQWEADAD 328 >gi|85715055|ref|ZP_01046040.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85698252|gb|EAQ36124.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 400 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 102/295 (34%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S S +F Sbjct: 87 DNSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S V S W + ++L+ ++++ LLG +T ++ R +T+E Sbjct: 147 LNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIET 206 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L KR + + A Q S +++ + + + + +E+ Sbjct: 207 NLVKRLVEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAITRPANAAILVRLRIDMED 264 Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + L++P T+ + L + + A + Q + +D + + Sbjct: 265 RGGTIELLLPYATIEPIRNVLLQMFMGEKFGRDPIWESHLATEIAQAQIAVDAVLYEAEI 324 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK ++TLK+G + R + + +GRVG IR++ + Sbjct: 325 PLKQLMTLKVGDTLALEMRPDASVAVRCGSVTLTEGRMGRVGDRVAIRVSRNLRK 379 >gi|78357750|ref|YP_389199.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220155|gb|ABB39504.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 326 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 87/289 (30%), Gaps = 10/289 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + V+++ S KF Sbjct: 38 FDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAVRKRVELNPISIDMTKFGD 91 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 + S + + N I + LV L+EN G + ++ R + +E+ Sbjct: 92 FMRSLPVPTSINIFKMEPLRGNAIIVVDSRLVFALVENFFGGAGSQP-KIEGREFTRIEQ 150 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + R I + + E + L + ++ V I + +E+ Sbjct: 151 AIVDRVIKIALDNMEESWRPVHEVNLELVR--SEINPQFAAIVPPSDVVVVITFEVELES 208 Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 S V+ +P T+ S Q + + + + V + R K Sbjct: 209 AIGSLVMCLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLLETPVEMKIRFGETKI 268 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 T ++ LK+G V+ + G + G V N ++ Sbjct: 269 TGNQLLRLKVGDVLLLDTDTDDLLEGTVEGVRKFWGISGIVKANKAFQV 317 >gi|315498450|ref|YP_004087254.1| flagellar motor switch protein flim [Asticcacaulis excentricus CB 48] gi|315416462|gb|ADU13103.1| flagellar motor switch protein FliM [Asticcacaulis excentricus CB 48] Length = 387 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 38/307 (12%), Positives = 105/307 (34%), Gaps = 5/307 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 83 ERSGIRAIINSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 142 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S + + + + +NL+ ++++ LLG ++ R +T+E+ Sbjct: 143 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIER 202 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R + I + NL+ + + + + +E+ Sbjct: 203 VLVQRMVEVILHDAKMAFEPLTPVNFNLDRLET--NPRFAAIARPANAAILVKLRIDMED 260 Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL ++ + + A + + + + ++ ++ Sbjct: 261 RGGRVELLLPYATLEPIRKMLLQQFMGEKFGRDNIWESHLATELWTTQMEVRAVLDEQQM 320 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI-NFDQKS 310 L +V+ LK+G+ I + L + + ++GR G N +R+ + ++ Sbjct: 321 PLSEVLNLKVGETIVLNATADSPIELRCGTIPLTNGKMGRKGHNIAVRVDHPLAASTKRR 380 Query: 311 LKNFLHK 317 L K Sbjct: 381 LTQIRKK 387 >gi|295097219|emb|CBK86309.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 330 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 38/304 (12%), Positives = 94/304 (30%), Gaps = 10/304 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G P P R+ + + + + + DI Sbjct: 25 LHGSMGDAGIKPYDPNTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSSDI 78 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + + + L+ + S+ LV ++NL G Sbjct: 79 TAGNIKIQPYHEFARNLPVPTNLNLLHLNPLRGTALMAFSSGLVFMAVDNLFGGDGRFPT 138 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R + E+++ R + + + I N N+ Sbjct: 139 KADGREFTPTEQRVIHRMLTMAREAYEFAWGSIYKIKTEYIRSE-IQVKFTNITSSPNDV 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLN 239 V T ++ I + F + IP T+ + + + S ++ + A + + Sbjct: 198 VVTTPFSVEIGSHRGEFNICIPFSTIEPLRELLSNPPMDNSRHEDSEWRSMLASQMRETE 257 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + T L +V+ +K G +IP + + +++ + G V Y ++ Sbjct: 258 LELVAQFADINTRLSNVMKMKKGDIIPLDK--QEFIEANVGSVPVFTAKYGSVNNQYALK 315 Query: 300 ITDR 303 + Sbjct: 316 VDRM 319 >gi|157164910|ref|YP_001467212.1| flagellar motor switch protein FliM [Campylobacter concisus 13826] gi|112799933|gb|EAT97277.1| flagellar motor switch protein FliM [Campylobacter concisus 13826] Length = 367 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 100/303 (33%), Gaps = 6/303 (1%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 ++ K + + + L M V++ S + + S Sbjct: 40 IIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVELRLHSVDQMTYGEFLMS 99 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 F+ S+ N + + ++ +++ LLG + E NR L+ +E L Sbjct: 100 LPSPTSFNVFSIKPLDGNCILEINPSIAFPMIDRLLGGTGENFE--ANRELTDIEVNLLD 157 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + I L + S + PN+E + NE V + M + + + Sbjct: 158 AVLRMIMQRLKESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGGSSGM 215 Query: 197 FVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 L P L + + + + V + + ++ Sbjct: 216 INLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKSIVSVN 275 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + LK G ++ AI+ + KE++ E+G +I+I I D+ +K+ Sbjct: 276 EFLNLKEGDILRLDRGADDKAIVCIDKKEVFLAEVGLHRFRKSIKIEQLIRSDKDEIKHI 335 Query: 315 LHK 317 L K Sbjct: 336 LEK 338 >gi|57168742|ref|ZP_00367873.1| flagellar motor switch protein FliM [Campylobacter coli RM2228] gi|305432516|ref|ZP_07401678.1| flagellar motor switch protein FliM [Campylobacter coli JV20] gi|57019789|gb|EAL56472.1| flagellar motor switch protein FliM [Campylobacter coli RM2228] gi|304444555|gb|EFM37206.1| flagellar motor switch protein FliM [Campylobacter coli JV20] Length = 358 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L M V+ S + + S F+ S Sbjct: 49 SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + ++ +++ LLG ++ +R L+ +E L + I L Sbjct: 109 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + +T E P++E + NE V + M + I N + + P L Sbjct: 167 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 224 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + V + + + + + LK G ++ Sbjct: 225 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 AI+S + K+++ ++G +I+I + I D+ +K L K Sbjct: 285 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 336 >gi|259907613|ref|YP_002647969.1| flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96] gi|224963235|emb|CAX54719.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96] gi|310764881|gb|ADP09831.1| Flagellar motor switch protein FliM [Erwinia sp. Ejp617] Length = 332 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 90/304 (29%), Gaps = 10/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 S+ + P P R+ + + + + + DI+ Sbjct: 30 GSVTREAQPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAG 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + + + + + L+ + S +V ++NL G + Sbjct: 84 NIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKAD 143 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ R + ST + I N N+ V T Sbjct: 144 GREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEYIRSE-IQVKFTNITSSPNDVVVT 202 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242 ++ I + F + IP ++ + + S + + + + + Sbjct: 203 TPFSIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELEL 262 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 T L +V+ K G VIP S G +++ + G V + +++ Sbjct: 263 VATFPDVPTRLTNVMKFKKGDVIPLDKP--ELIAASVGGVPVFTAKYGSVNNQFALKVEQ 320 Query: 303 RINF 306 I Sbjct: 321 MIPS 324 >gi|283477455|emb|CAY73371.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae DSM 12163] Length = 334 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 90/304 (29%), Gaps = 10/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 S+ + P P R+ + + + + + DI+ Sbjct: 32 GSVTREAQPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAG 85 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + + + + + L+ + S +V ++NL G + Sbjct: 86 NIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKAD 145 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ R + ST + I N N+ V T Sbjct: 146 GREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEYIRSE-IQVKFTNITSSPNDVVVT 204 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242 ++ I + F + IP ++ + + S + + + + + Sbjct: 205 TPFSIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELEL 264 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 T L +V+ K G VIP S G +++ + G V + +++ Sbjct: 265 VATFPDVPTRLTNVMKFKKGDVIPLDKP--ELIAASVGGVPVFTAKYGSVNNQFALKVEQ 322 Query: 303 RINF 306 I Sbjct: 323 MIPS 326 >gi|292489155|ref|YP_003532042.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430] gi|292900273|ref|YP_003539642.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291200121|emb|CBJ47247.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291554589|emb|CBA22223.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430] gi|312173313|emb|CBX81568.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC BAA-2158] Length = 334 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 90/304 (29%), Gaps = 10/304 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 S+ + P P R+ + + + + + DI+ Sbjct: 32 GSVAREAQPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAG 85 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + + + + + L+ + S +V ++NL G + Sbjct: 86 NIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKAD 145 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + E+++ R + ST + I N N+ V T Sbjct: 146 GREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEYIRSE-IQVKFTNITSSPNDVVVT 204 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242 + I + F + IP ++ + + S + + + + + Sbjct: 205 TPFFIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELEL 264 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 T L +V+ LK G VIP S G +++ + G V + +++ Sbjct: 265 VATFPDLPTRLTNVMKLKKGDVIPLDKP--ELIAASVGGVPVFTAKYGSVNNQFALKVEQ 322 Query: 303 RINF 306 I Sbjct: 323 MIPS 326 >gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis audaxviator MP104C] gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis audaxviator MP104C] Length = 332 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 97/301 (32%), Gaps = 8/301 (2%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 P L K + ++ Y + L + + + S F + Sbjct: 35 PYKLYDFRRPNKFSKEQLRTLQTVHEGYARILSNFLSGYLRSTIVVRVASVDQFTFDDFV 94 Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 S V + +L + + + +++ L G E ++ R L+ +E + Sbjct: 95 RSVPIPTVLTIITLKPLKGMAVMETNPQFLFPIIDLLFGGPGEPPKRV--RELTDIELSV 152 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 ++ ++ P +E + + +E V I + + A Sbjct: 153 VRKLNKKLLENFQLAWQDIYRMEPEIESVET--NPRLHQIISPSEIVAVITLTAVVGATA 210 Query: 195 -SSFVLIIPQETLLKTTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 + +P L + S + + + V + + + Sbjct: 211 RGLINICLPHIMLDPVLMHLSSFYRHVHGALVPDGTEGKRMEYWIERAPVELSAVVGESE 270 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 T++D++ L++G V+P R L + + + + G +G+ +++T + ++ Sbjct: 271 ITVQDLLQLQVGDVVPLSRRVTQDLDLYVSDQLKFKAQAGVLGRYLAVQVTSLVEGGDRA 330 Query: 311 L 311 + Sbjct: 331 V 331 >gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] Length = 308 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 6/278 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K + + + + L + V I+ S FS + L Sbjct: 34 KDLIRTLVLVHENLARLLQSYLSAGLRTWVQITVRSTNQYTFSEFTQLLPNPTIALSFRL 93 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + S+N+ ++E + G R L+ +E + +R + + + Sbjct: 94 NPLPGMCLLEISHNIAFAIVERVFGGPGS--DLQPQRELTEIELGIIQRVVRDTFGPMKE 151 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P +E E V I + + I P T+ Sbjct: 152 AWRNVAEIDPAIEAVET--NPVFIQIENPTEVVAAITLAVEIGEHLGHMTFAFPYSTVEP 209 Query: 209 T--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L S +++++S + R + + + + + L + + L++G VI Sbjct: 210 VLSRLSPQSWLAETKHKSPSDEESLRRAVQEAPLPVKALLGKTRMRLGEFLALQVGDVIR 269 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 R + K + + G VG+ ++IT R+ Sbjct: 270 LDARVGGELPVFVGNKLAFQAKPGVVGERMAVQITRRV 307 >gi|153951200|ref|YP_001397325.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. doylei 269.97] gi|152938646|gb|ABS43387.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. doylei 269.97] Length = 359 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L M V+ S + + S F+ S Sbjct: 50 SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + ++ +++ LLG ++ +R L+ +E L + I L Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + +T E P++E + NE V + M + I N + + P L Sbjct: 168 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 225 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + V + + + + + LK G ++ Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 AI+S + K+++ ++G +I+I + I D+ +K L K Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337 >gi|260772330|ref|ZP_05881246.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP 69.14] gi|260611469|gb|EEX36672.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP 69.14] Length = 281 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 34/257 (13%), Positives = 84/257 (32%), Gaps = 5/257 (1%) Query: 53 KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112 + ++S Q KF ++ + + LV L+EN Sbjct: 1 MLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFF 60 Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 G ++ R + E+++ + + + A + S E Sbjct: 61 GGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMA 118 Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPF 231 E + + ++ ++ F +++P + + + Q+ Sbjct: 119 NIVSPTEVIVVCSFHIEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSSAL 178 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + +N + + L+D++ L++G +IP AI+ Y ++GR Sbjct: 179 RDEIMDVPINFRVNLLEQDIALRDLMDLQVGDIIPIKMP--EHAIMFVEELPTYRVKMGR 236 Query: 292 VGKNYTIRITDRINFDQ 308 G ++I+ +I + Sbjct: 237 SGDKLAVQISQKIKRPE 253 >gi|57237070|ref|YP_178082.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221] gi|86149575|ref|ZP_01067805.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151492|ref|ZP_01069707.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 260.94] gi|86154028|ref|ZP_01072229.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597737|ref|ZP_01100970.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 84-25] gi|121613064|ref|YP_999786.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 81-176] gi|148926866|ref|ZP_01810544.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414374|ref|YP_001481630.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 81116] gi|167004761|ref|ZP_02270519.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356443|ref|ZP_03223207.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218561745|ref|YP_002343524.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955504|ref|ZP_06372999.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 1336] gi|315123665|ref|YP_004065669.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57165874|gb|AAW34653.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221] gi|85839843|gb|EAQ57102.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841839|gb|EAQ59086.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 260.94] gi|85842442|gb|EAQ59656.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni HB93-13] gi|87248986|gb|EAQ71948.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 81-176] gi|88190041|gb|EAQ94017.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 84-25] gi|112359451|emb|CAL34234.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844443|gb|EDK21551.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385338|gb|ABV51653.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|205345630|gb|EDZ32269.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792965|gb|EFC31739.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 1336] gi|284925356|gb|ADC27708.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni IA3902] gi|307747020|gb|ADN90290.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni M1] gi|315017387|gb|ADT65480.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057501|gb|ADT71830.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni S3] gi|315927743|gb|EFV07070.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929164|gb|EFV08389.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 305] gi|315931622|gb|EFV10587.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 327] Length = 359 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L M V+ S + + S F+ S Sbjct: 50 SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + ++ +++ LLG ++ +R L+ +E L + I L Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + +T E P++E + NE V + M + I N + + P L Sbjct: 168 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 225 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + V + + + + + LK G ++ Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 AI+S + K+++ ++G +I+I + I D+ +K L K Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337 >gi|302383953|ref|YP_003819776.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides ATCC 15264] gi|302194581|gb|ADL02153.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides ATCC 15264] Length = 356 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 98/282 (34%), Gaps = 4/282 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + + + + +V++S + S +F ++S + + Sbjct: 67 SYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFR 126 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + +NL+ ++++ LLG ++ R +T+E+ L +R + I A Sbjct: 127 AEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILADA 186 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 NL+ + + + + +E+ L++P TL Sbjct: 187 QAAFEPLTPVHFNLDRLET--NPRFAAIARPANAAILVKLRIDMEDRGGRVELLLPYATL 244 Query: 207 LKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 ++ + + A + + + + ++ + L V+ LK+G + Sbjct: 245 EPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTDTEVRAVLDEQSCPLSTVLNLKVGDTL 304 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + + + +GR G++ IR+ I+ + Sbjct: 305 MLNATPDSDISIRCGSIPVTTGRMGRKGQHIAIRVEGPISVE 346 >gi|154253006|ref|YP_001413830.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans DS-1] gi|154156956|gb|ABS64173.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans DS-1] Length = 374 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 101/280 (36%), Gaps = 4/280 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + + + + +V++S + S +F ++S + + Sbjct: 63 SYERLPMLEIVFDRLVRLMTVSLRNFTSDNVEVSLDNVSSIRFGDYLNSIPLPAILAVFR 122 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 W + +NL+ ++++ LLG ++ R +T+E L +R I + + Sbjct: 123 AKQWDNYGMFTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIELNLVQRMIEVVLQDV 182 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + L+ + + + + +E+ L++P TL Sbjct: 183 QSAFEPLSPVTLELDRMET--NPRFAAIARPANAAILVKLRVDMEDRGGRIELLLPYATL 240 Query: 207 LKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L + + A + + V ++ ++ ++ +L++V+ ++GQ + Sbjct: 241 EPIRELLLQMFMGEKFGRDTIWESHLATELWATKVPLEAVLDEQQLSLREVMDFRVGQTL 300 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + L G + ++GRVG + +R+ I Sbjct: 301 MLNSGPEGAIDLRCGGVRLGKGKMGRVGNHVAVRVEQAIK 340 >gi|301165893|emb|CBW25466.1| flagellar motor switch protein FliM [Bacteriovorax marinus SJ] Length = 343 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 34/296 (11%), Positives = 89/296 (30%), Gaps = 9/296 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 N R+ I + + + + IS S Sbjct: 43 NIQAYDLTNQDRVIRG------RMPILEIISERFIRSFRVSLSNSLRKISTISMISTDLL 96 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF +++ + + + L ++++ G + ++ + + Sbjct: 97 KFGEFVNTLPIPSCMCIMRFNELRGPALLVFESKLAYAIIDSYFGGTDRPFTKIEGKEFT 156 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E K+ + L + + + ++ + + + Sbjct: 157 MIELSFMKKVMDMAINDLEEAWAPVHRIDAQ--YLRTEINPQFVGVVPPSDVIIATTLEV 214 Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 E+ + + ++++P T+ S Q ++ Q + + ++ Sbjct: 215 EFESASGTIMIVVPYSTIEPIKQKLSSSFQTDNDMADSIWTQAMNEHIKQAHATMVVKLG 274 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 T+ D+VTL+ G +IP ++ G E C +G N ++IT+ Sbjct: 275 ETNITVGDLVTLEKGDIIPLNQEASGEVVVEVEGVEKMKCLIGTHKGNRAVQITNV 330 >gi|283955445|ref|ZP_06372943.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] gi|283793072|gb|EFC31843.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] Length = 359 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L M V+ S + + S F+ S Sbjct: 50 SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + ++ +++ LLG ++ +R L+ +E L + I L Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + +T E P++E + NE V + M + I N + + P L Sbjct: 168 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 225 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + V + + + + + LK G ++ Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 AI+S + K+++ ++G +I+I + I D+ +K L K Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337 >gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense YUAN-3] gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense YUAN-3] Length = 335 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 104/305 (34%), Gaps = 15/305 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S K P + + K K S + Y + L + + + Sbjct: 31 STEKKVRPYDFKIPKKF------NKEQMKTLSIIYENYGRLLSSYLSGTLRSYCKVEVLT 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + +F ++ + N + + + + S ++ +++ LLG E + Sbjct: 85 IEEQRFFEYSNALESNVLMGVLDMKPLEGSSMVTLSQSVAFGIIDRLLGGPGEIYE--AD 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + +E +L ++ + + ++ P+ + +++ NE V + Sbjct: 143 RDYTDIEMQLLRQVVQTVCRLVGDAWENVYALQPDFVRLE--NNSRQSQLVSPNETVVIV 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-----QNKSENQSEDLIDPFARKTYQLN 239 +++ I +V + IP L + + + RK Q+ Sbjct: 201 MLDVEIRDVVGNISFCIPYVILEPVLEHLNTRYWFTESRSKTGDEQASRENLLRKVRQIP 260 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + + TL + + L++G V+P A + + ++ + LG N IR Sbjct: 261 IELRAVLGTARITLHEALQLQVGDVVPLDQHLDEKAAVYSGKEKWFEGTLGTWHNNRAIR 320 Query: 300 ITDRI 304 + + Sbjct: 321 VDRIM 325 >gi|220924581|ref|YP_002499883.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS 2060] gi|219949188|gb|ACL59580.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS 2060] Length = 403 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 98/281 (34%), Gaps = 4/281 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + + L + +V+++ + S +F +++ + Sbjct: 107 SYERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPMPTLLGVFK 166 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 W ++ + ++L L+ LLG T +L R +++E L +R + I L Sbjct: 167 ADLWENSGLLTVDSSLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDL 226 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 ++ + T I++ + +E ++ P T+ Sbjct: 227 EASFQPLSPVRFQIDRIE--SNPRFATITRPANAAILIDLKLDMEGRGGLLQILFPYATI 284 Query: 207 LKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L S + + A + +Q ++ ++ ++ L+ V++L++G I Sbjct: 285 EPIRDLLLQSFMGEKLGRDHVWEGHLATEIWQADLAVEAVLHEMTLPLRRVLSLEVGDTI 344 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 F + L + +GR+ + +++T + Sbjct: 345 MFDAKPTDLITLRCGDWALTQGRIGRLDDSIAVQVTRPLRR 385 >gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] Length = 367 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 6/304 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +++ K + + + L M V+I S + + Sbjct: 37 VIIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVEIRLHSVDQMTYGEFLM 96 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 S F+ S+ N + + ++ +++ LLG + E +R L+ +E L Sbjct: 97 SLPSPTSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGNGEGFE--ASRELTDIEVNLL 154 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + + L + S + PN+E + NE V + M + + N + Sbjct: 155 DAILRMMMQRLKESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGNSSG 212 Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + P L + + + + V + + ++ Sbjct: 213 MINICYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKSVVSV 272 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + + LK G ++ AI++ + KE++ E+G +IRI + I D+ +KN Sbjct: 273 NEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGLHRFRKSIRIEELIRSDKDEIKN 332 Query: 314 FLHK 317 L + Sbjct: 333 ILEQ 336 >gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus DSM 8271] gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus DSM 8271] Length = 332 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 111/313 (35%), Gaps = 10/313 (3%) Query: 1 MRGQSIHKNT---SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57 + S+ + S H + L K ++ + + L M Sbjct: 17 LSDGSVDEEAIALSNSHKVRLYDFKRPNKFSKGQLNSLRNIHENFCRNLVTYLAGAMHTV 76 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 ++ S + + S + S+ N I S L +++ LLG + Sbjct: 77 IEAKVLSTEQVTYDEYTRSLPYPSILGIYSMDPLEGNALIELSPGLGFHMVDRLLGGYGK 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 + NR L+ +E+++ + + ++ +V+ + S +P D ++ Sbjct: 137 --DAMKNRDLTEIERRIVQGMLRKMISVIGEAWSEIYTITPQYVDMET--NVQFIQIVAP 192 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARK 234 NE V + M + IE+ + +P + + + + Q+ + RK Sbjct: 193 NEMVVVVTMEVKIEDSIGMINICLPYIVMKPILDKLNNILLFSSAGKAQNPEDQRTIRRK 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++ V + + + T+++++ L+ G VIP + + + ++ G Sbjct: 253 IERVRVPLKVFLGQTQITVRELLGLEKGDVIPLQQHIQEPLDIYVGKFKKFAGIPGLHSN 312 Query: 295 NYTIRITDRINFD 307 ++I+ +N + Sbjct: 313 RLAVQISGVLNEE 325 >gi|170288054|ref|YP_001738292.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2] gi|170175557|gb|ACB08609.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2] Length = 328 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 98/295 (33%), Gaps = 15/295 (5%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 P ++ K + + + + L ++ VD+ S Sbjct: 36 VKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLT 88 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 + I S + + + +L T+L+ ++G NR + Sbjct: 89 YEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTMLDIIMGGPG---DNPPNRPPTE 145 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E + ++ + + +L Q S Q P++E+ + NE V + +++ Sbjct: 146 IETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVS 203 Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 S + P L + + E+ ++ + + ++ V + I Sbjct: 204 WGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPEKVEERMEELRKASQKIPVTVQAVI 263 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + LK+++ L++G VI K + G+ + G Y +++T Sbjct: 264 GETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGTFKGKYAVKVT 318 >gi|170742328|ref|YP_001770983.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] gi|168196602|gb|ACA18549.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] Length = 403 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 4/281 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + + L + +V+++ + S +F +++ + Sbjct: 107 SYERLPMLEIIFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFK 166 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 W ++ + +NL L+ LLG T +L R +++E L +R + I L Sbjct: 167 ADLWENSGLVTVDSNLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDL 226 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 ++ + T I++ + +E ++ P T+ Sbjct: 227 EASFQPLSPVRFQIDRLE--SNPRFATITRPANAAILIDLKLDMEGRGGLLQILFPYATI 284 Query: 207 LKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L S + + A + +Q V ++ ++ LK V+ L++G I Sbjct: 285 EPIRDLLLQSFMGEKLGRDHVWEGHLATEIWQAEVEVEAVLHQMTLPLKRVLALEVGDTI 344 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 F + L + +GR+ + +++T + Sbjct: 345 LFDAKPTDLITLRCGDWALSQGRIGRLEDSIAVQVTRPLRR 385 >gi|329888223|ref|ZP_08266821.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC 11568] gi|328846779|gb|EGF96341.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC 11568] Length = 352 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 102/296 (34%), Gaps = 4/296 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 49 ERSGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDTISSIRFGDY 108 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S + + + + +NL+ ++++ LLG ++ R +T+E+ Sbjct: 109 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIER 168 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R + I Q NL+ + + + + +E+ Sbjct: 169 VLVQRMVEVILNDARQAFEPLTPVHFNLDRLET--NPRFAAIARPANAAILVKLRIDMED 226 Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL ++ + + A + + + ++ ++ Sbjct: 227 RGGRVELLLPYSTLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTETEVRCVLDEQQM 286 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L V+ LK+G + ++ + A + + +GR G++ +R+ I+ D Sbjct: 287 PLSKVLDLKVGDTLMLNVTPESEVSVRAGSIPLTTGRMGRKGQHIAVRVEGPISTD 342 >gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] Length = 319 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 116/303 (38%), Gaps = 4/303 (1%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 + RL G + + + + ++K IS + ++ + ++ Sbjct: 19 IADRLLDAAGISVDRLPMLPVVFDRMARLMADAMRQKSPSPSYISVSYVENNRIGDVLDE 78 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 F+ N + + W + +G + + TL++ L GA P R S +E ++A+ Sbjct: 79 FESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDDERPFSNIETRIAR 138 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + L + + E++ +E + N + Sbjct: 139 TMFEVAAKALAESFAPIAETTLKIERIE--SRMDFAVVGRRNNPAVVARLLQQAIGRGGE 196 Query: 197 FVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 +++P TL + ++ + F + + V ++ + ++ +L D Sbjct: 197 VFIVMPHSTLNPLRQRLSQVLSGEMSSRDKQWTQHFHNEIQRTEVKLEAILEEREMSLGD 256 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKNF 314 + L++GQVI ++ L+ N + +++C+LG++ +YT++I + I ++ + Sbjct: 257 LANLRVGQVIELQATARSPVTLACNDQPVFTCQLGQLNGSYTLQIDELIHEEEKDLFDDL 316 Query: 315 LHK 317 ++ Sbjct: 317 RNR 319 >gi|227820849|ref|YP_002824819.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234] gi|227339848|gb|ACP24066.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234] Length = 315 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 91/312 (29%), Positives = 157/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N LLAR+TG LGD KTI + + LG+++ + LP++ K++ D+ I Y Sbjct: 4 STDSNVYAFDKKLLARMTGALGDDKTIGRTALELGHVFSERLPEMLKQETGRDIAIGYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + G + +I E + S SL +W + F IGC + ++I L+E LLGA I + Sbjct: 64 VKMGFRNELIADLGEAVLLSDVSLRNWCAEFQIGCDSPVLIALVEALLGAEPIDIEEPLP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R+LS +E +A +I+ + + P + ++ L + + +I Sbjct: 124 RALSKIEIDVAVPVFERIAEAVRMAVDAPGGFEPVVGRPHNGAERLPPDPALEDVYAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + V S+F +IIPQ LLKT ++ + ++E+ D + + + V ++ Sbjct: 184 DMTFGLGPVLSTFSVIIPQNVLLKTQIVPPGNAGRNESMKTDWSEQLEEQIRRSAVTLEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + ++ANG+++Y CE GR G YT+R+ D Sbjct: 244 RIQLESLTLDTISRLQPGDVIPFHDGQDVRVEVNANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|15643443|ref|NP_228487.1| flagellar motor switch protein FliM [Thermotoga maritima MSB8] gi|4981202|gb|AAD35762.1|AE001740_8 flagellar motor switch protein FliM [Thermotoga maritima MSB8] Length = 328 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 100/295 (33%), Gaps = 15/295 (5%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 P ++ K + + + + L ++ VD+ S Sbjct: 36 VKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLT 88 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 + I S + + + +L T+L+ ++G E P NR + Sbjct: 89 YEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTE 145 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E + ++ + + +L Q S Q P++E+ + NE V + +++ Sbjct: 146 IETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVS 203 Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 S + P L + + E+ ++ + + ++ V + I Sbjct: 204 WGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPEKVEERMEELRKASQKIPVTVQAVI 263 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + LK+++ L++G VI K + G+ + G Y +++T Sbjct: 264 GETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVT 318 >gi|23009967|ref|ZP_00050822.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 316 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 98/285 (34%), Gaps = 4/285 (1%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 + + + L + +V+++ + S +F +++ + Sbjct: 22 ERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKAD 81 Query: 90 SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 W + + L + ++ LLG + +L R +T+E L +R I I + L Sbjct: 82 PWEGSGIVTVEQTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMNLVRRLIDIILSDLEL 141 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ++ + T I++ + ++ ++ P T+ Sbjct: 142 SFQPLSPVRFGIDRLET--NPRFATITRPGNAAILISLKLDMDGRGGGMQILFPYATVES 199 Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + S + + + A + +Q ++ ++ ++ LK V+ LK+G + F Sbjct: 200 IRDLLMQSFMGERLGRDQVWESHLATEIWQADLEMEAVLHEVTLPLKRVLGLKVGDTLMF 259 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + + + +GR+ ++I + + +L+ Sbjct: 260 DRKPTDLITVRCGDWALTQGRIGRIDDAIAVQIARPLRQSRTTLQ 304 >gi|78044874|ref|YP_359866.1| flagellar motor switch protein FliM [Carboxydothermus hydrogenoformans Z-2901] gi|77996989|gb|ABB15888.1| flagellar motor switch protein FliM [Carboxydothermus hydrogenoformans Z-2901] Length = 335 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 96/284 (33%), Gaps = 7/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + Y + + + ++ + S + + S + + Sbjct: 53 SKENLRTLHLIHDNYARLISNFLTGYLRTNISVKVASVDQATYEDFLVSVPTPTLITTFK 112 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L + + + + ++ L G S + P++ R L+ +E + K+ ++ L Sbjct: 113 LHPLKGSMVMETNLQFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLA 170 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 Q + + P +E + + + NE V I I L +P E L Sbjct: 171 QAWAEIIKVEPEIEALE--NNPRLHQVLSPNEIVAIITFTTEILGNNGLINLCLPFEVLD 228 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + E + + + + + +++ + +++G + Sbjct: 229 PLLAKLSASYWFSHATAADREAFARHMEGFLAESELEVSAILGGTELRVREFLKIEVGDI 288 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + L ++++ + GRVG+ +IT I D+ Sbjct: 289 VVLNRKVDEELELFVEDQKLFKVQPGRVGEKLCCQITGMIERDE 332 >gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198] gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198] Length = 357 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 105/319 (32%), Gaps = 6/319 (1%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + + + SP I L K + + + L M V+I Sbjct: 22 VDSSANEQGISPKRQITLYDFKRPNRVSKEQLRAFKGIHDKMARNLSSQISAIMRSIVEI 81 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + S F+ S+ + + ++V ++++ LLG ET Sbjct: 82 QLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMDGTGVLEINPSIVFSMIDRLLGGKGETYD 141 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R S +E L + QI L E P+++ + NE Sbjct: 142 H--QREFSDIELNLLDTILRQIMQTLKDAWGPVAEIFPSVDAKESSPNV--VQIVAQNEV 197 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQL 238 V + M M I + + L P +L S + + Sbjct: 198 VIMVVMEMIIGHSSGMLSLCYPVISLEAVLSRLGSRDLVLSETSSKKSRNKELQALIGGA 257 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +++ + +L++++ L+ G +I ++ +GK+ + ++G TI Sbjct: 258 GISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVAIDGKDKFLADIGLQRYRKTI 317 Query: 299 RITDRINFDQKSLKNFLHK 317 RI + I ++ +K L Sbjct: 318 RIKEAIRTEKDQVKEILEM 336 >gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT 1] gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT 1] Length = 325 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 97/307 (31%), Gaps = 6/307 (1%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + + + P+ + K + + + + L + V ++ S Sbjct: 23 AEEEPQTSDTPVQVYDFRRPNKFSKDQMRTLQIVHENFARILSNFLTAYLRTPVQVTLAS 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 F I S + S S + + + V +++ L G +T Q+ Sbjct: 83 VSQVTFEEFIFSLPTPTLMSIFKASDNMGSAMLETNPQFVFPIIDLLFGGEGKTPKQI-- 140 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R L+ +E + +R + +I L E SP +E+ + N SNE V + Sbjct: 141 RELTEIELTVMRRIVNKILENLRYAWEDINELSPQIENMDT--NPQFNQMIASNETVALL 198 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVNI 242 ++ I + + P TL + + S+ ++V + Sbjct: 199 TLSTKIRDSEGLINVCFPFITLEPVIANLTAQHWFSNSQISGGVHSRMLETGLEDVDVEL 258 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ++D + + G VI R L K ++ + G ++ Sbjct: 259 TAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEKPMFKIQAGVSKGRRAVQFLH 318 Query: 303 RINFDQK 309 + + Sbjct: 319 AEGGEAE 325 >gi|221235077|ref|YP_002517513.1| flagellar motor switch protein FliM [Caulobacter crescentus NA1000] gi|300680949|sp|B8GXB5|FLIM_CAUCN RecName: Full=Flagellar motor switch protein FliM gi|220964249|gb|ACL95605.1| flagellar motor switch protein fliM [Caulobacter crescentus NA1000] Length = 374 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 33/288 (11%), Positives = 96/288 (33%), Gaps = 4/288 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 72 DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 131 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEK 132 ++S + + + + +NL+ ++++ LLG ++ R +T+E+ Sbjct: 132 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 191 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R I + L S +L+ + + + + +E+ Sbjct: 192 VLVQRMIEVVLHDLKSAFEPLHPVSFSLDRLET--NPRFAAIARPANAAILVKLRIDMED 249 Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL ++ + + A + + + + ++ ++ Sbjct: 250 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQV 309 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 L V+ +++G + + L A + +GR + +R Sbjct: 310 PLSRVLNMQVGDTLMLNATPDSLVELRAGAIPLTRGRMGRRNHSIAVR 357 >gi|254418956|ref|ZP_05032680.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3] gi|196185133|gb|EDX80109.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3] Length = 346 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 98/282 (34%), Gaps = 4/282 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + + + + +V++S + S +F ++S + + Sbjct: 58 SYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFR 117 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + +NL+ ++++ LLG ++ R +T+E+ L +R + + Sbjct: 118 AEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVVLNDA 177 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + NL+ + I + + +E+ L++P TL Sbjct: 178 RLAFEPLTPVTFNLDRLET--NPRFAAIARPANAAILIKLRIDMEDRGGRIELLLPYATL 235 Query: 207 LKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 ++ + + A + + + ++ + L V+ LK+G + Sbjct: 236 EPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTETEVRAVLDEQMMPLSTVLNLKVGDTM 295 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + A + + +GR G++ +RI +N + Sbjct: 296 MLNATPDSEVSIRAGAIPLTTGRMGRKGQHIAVRIEGPVNPE 337 >gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92] gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92] Length = 366 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 101/303 (33%), Gaps = 6/303 (1%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 ++ K + + + L M V+I S + + S Sbjct: 40 IIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVEIRLHSVDQMTYGEFLMS 99 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 F+ S+ N + + ++ +++ LLG + E NR L+ +E L Sbjct: 100 LPSPTSFNVFSIKPLDGNCILEINPSIAFPMIDRLLGGTGENFET--NRELTDIEVNLLD 157 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + I L + + + PN+E + NE V + M + + N + Sbjct: 158 AVLRMIMQRLKESWAMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGNSSGM 215 Query: 197 FVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 L P L + + + + V + + ++ Sbjct: 216 INLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKAIVSVS 275 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + LK G ++ AI+ + KE++ E+G +I+I I D+ +KN Sbjct: 276 EFLDLKEGDIVRLDRSADDKAIVCIDKKEVFLAEVGLHRFRKSIKIEQLIRSDKDEIKNI 335 Query: 315 LHK 317 L K Sbjct: 336 LEK 338 >gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. maculicola str. ES4326] Length = 252 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 89/254 (35%), Gaps = 6/254 (2%) Query: 52 EKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENL 111 + D++ Q KF +HS + A + LV L++N Sbjct: 1 NLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNF 60 Query: 112 LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171 G ++ R + E ++ + + Q L + E + E Sbjct: 61 FGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAM 117 Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDP 230 +E V ++ ++ + +P + + + Q+ ++Q E ++ Sbjct: 118 ANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNA 177 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP ++ ANG + +LG Sbjct: 178 LKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--SDSLVMRANGVPSFKVKLG 235 Query: 291 RVGKNYTIRITDRI 304 +++ + I Sbjct: 236 SHKGKMALQVIEPI 249 >gi|148269397|ref|YP_001243857.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1] gi|147734941|gb|ABQ46281.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1] Length = 328 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 98/295 (33%), Gaps = 15/295 (5%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 P ++ K + + + + L ++ VD+ S Sbjct: 36 VKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLT 88 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 + I S + + + +L T+L+ ++G NR + Sbjct: 89 YEEFIRSVMIPSFIVIFTGDIFEGSAIFEMRLDLFYTMLDIIMGGPG---DNPPNRPPTE 145 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E + ++ + + +L Q S Q P++E+ + NE V + +++ Sbjct: 146 IETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVS 203 Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 S + P L + + E+ ++ + + ++ V + I Sbjct: 204 WGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPERVEERMEELKKVSQKVPVTVQAVI 263 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + LK+++ L++G VI K + G+ + G Y +++T Sbjct: 264 GETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVT 318 >gi|150395476|ref|YP_001325943.1| surface presentation of antigens (SPOA) protein [Sinorhizobium medicae WSM419] gi|150026991|gb|ABR59108.1| surface presentation of antigens (SPOA) protein [Sinorhizobium medicae WSM419] Length = 315 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 91/311 (29%), Positives = 156/311 (50%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 N LLAR+ G LGD K I++++ L ++ + LP + + + DV I+Y Sbjct: 5 TASNIHAFDKRLLARMIGALGDDKVIDRLALELAQIFDELLPGVLRSETGCDVTIAYAGF 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 ++G + ++ + + SL +W ++F IGC + ++I L+E LLGA I + R Sbjct: 65 RAGLRNELVAGLGDGVLIGDLSLRNWCTDFQIGCDSPVLIALVEALLGAEPAGIEEPAPR 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 SLS +E +A I+ VL ++ P + Y+ K L + + +I+ Sbjct: 125 SLSKIEIDVALPVFHGIAEVLRIAVNAPGGFEPVVGRPYNSAERAKPDPALEDVYAASID 184 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 M + + V S+F +I+PQ TLLKT +S K +N + + + + V ++ R Sbjct: 185 MTIGLGPVLSTFSVIVPQSTLLKTRFVSPKGAGKDQNAKTEWTEQLEEQVRRSAVALEAR 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 245 IRLESLTLDTIARLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSKYTVRVKDTHG 304 Query: 306 FDQKSLKNFLH 316 +Q L++ + Sbjct: 305 SEQDILRHIMS 315 >gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] Length = 353 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 106/318 (33%), Gaps = 11/318 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + H+ + L K + S+ + L M V+I Sbjct: 28 KQGITHQKQ-----VTLYDFKRPNRVSKEQLRAFKSIHDKMARSLSSQVSAVMRSIVEIQ 82 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 S + + S F+ S+ + + ++ +++ LLG + Sbjct: 83 LHSVDQMTYGEFLMSLPSPTSFNIFSMKPLEGAAILEINPSIAFPMIDRLLGGKGDPYEN 142 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 +R S +E L + QI L + S+ E P+++ + NE V Sbjct: 143 --SREFSDIELNLLDTLLRQIMQNLKEAWSSITEIFPSVDAKESSPNV--VQIVAQNEIV 198 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLN 239 + M + I + + + P +L S + + N Sbjct: 199 IMVVMEIIIGHSSGMMSICYPVISLETVLSRLASRDLMLSDTSSKKSRNKELQALIAGAN 258 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + +LK+V+ L++G ++ ++S +G+E Y +G T++ Sbjct: 259 VVVSGYLGNATLSLKEVLDLQVGDIVRLDRAADDTILVSVDGREKYIASIGLQRYRKTLQ 318 Query: 300 ITDRINFDQKSLKNFLHK 317 I + I ++ +K L Sbjct: 319 IKEVIKTEKDQVKEVLEM 336 >gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277] gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277] Length = 368 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 6/304 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +++ K + + + L M V+I S + + Sbjct: 38 VIIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVEIRLHSVDQMTYGEFLM 97 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 S F+ S+ N + + ++ +++ LLG + E +R L+ +E L Sbjct: 98 SLPSPTSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGNGEGFET--SRELTDIEVNLL 155 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + + L + S + PN+E + NE V + M + + N + Sbjct: 156 DAILRMMMQRLKESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGNSSG 213 Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + P L + + + + V + + ++ Sbjct: 214 MINICYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKSIVSV 273 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + + LK G ++ AI++ + KE++ E+G +IRI + I D+ +KN Sbjct: 274 NEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGLHRFRKSIRIEELIRSDKDEIKN 333 Query: 314 FLHK 317 L + Sbjct: 334 ILEQ 337 >gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC30] gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC10] gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC20] gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC30] gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC10] gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC20] Length = 332 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 10/299 (3%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + K + ++ +V + + + + IHS + Sbjct: 36 DFRRPTKLSKEYVNTLHMIFEDFSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPK 95 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL------YNRSLSTVEKK 133 + S I + L + L+E L G + +S + +E Sbjct: 96 FTLLGLFHSQPLSGIQMIEMNPQLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETA 155 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 + + +AQ V L+ + N NE V + + I V Sbjct: 156 ILEEVVAQFVRVYQNVWKDIVALDSVLDGIDT--NPQLMQNMSPNEPVVLVTFTIKIFEV 213 Query: 194 ASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L IP + + ++ ++D + + +N++ + + Sbjct: 214 KHFINLCIPYVFFEGIIDKLSFRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQM 273 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +L + + L+ G VI + +GK + + G+ I + D++ +Q+ Sbjct: 274 SLSEFLHLEEGDVIKLDKKITEPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQEL 332 >gi|295688787|ref|YP_003592480.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756] gi|295430690|gb|ADG09862.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756] Length = 369 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 32/288 (11%), Positives = 96/288 (33%), Gaps = 4/288 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 67 DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 126 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEK 132 ++S + + + + +NL+ ++++ LLG ++ R +T+E+ Sbjct: 127 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 186 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R I + L + +L+ + + + + +E+ Sbjct: 187 VLVQRMIEVVLHDLKSAFEPLHPVAFSLDRLET--NPRFAAIARPANAAILVKLRIDMED 244 Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL ++ + + A + + + + ++ ++ Sbjct: 245 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQL 304 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 L V+ +++G + + L A + +GR + +R Sbjct: 305 PLSRVLNMQVGDTLMLNATPDSLVELRAGAIPLTRGRMGRRNHSIAVR 352 >gi|312879599|ref|ZP_07739399.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM 12260] gi|310782890|gb|EFQ23288.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM 12260] Length = 334 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 104/307 (33%), Gaps = 13/307 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ + + K + + + + L + V Sbjct: 30 ETEERKVKIYDFRRPDKF------SKDQLRAIQMIHDSFARQLTTSLSTLVRSMVSAEVA 83 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S + I S + V + S N + + +LV ++++ +LG E + + Sbjct: 84 SVDQMAYDEFIRSLVQPTVIGVLEMYPLSGNAVLEMNPHLVFSIIDRMLGGKGEPLRKP- 142 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R L+ +E+ + +R + +I L + ST + E + V Sbjct: 143 -RDLTDIERTVVERVMMKILEHLEESWSTVVDVRFRFE--SMESNPFFVQICPGTDMVLL 199 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL---IDPFARKTYQLNV 240 + + + + L IP + S + ++L D +++ ++++V Sbjct: 200 VTLKIQVGETEGIMNLCIPYFVMEPMIDKLSSQHWFASTGKKNLEGIRDMLSKRLHEVSV 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + TL DV+ L++ VI + L + + C+ G K+Y + Sbjct: 260 PLALELGHCALTLGDVLQLQVNDVIRLDGKATDPLGLRVGNRVKFLCQAGLSEKHYAGSV 319 Query: 301 TDRINFD 307 + + + Sbjct: 320 LEVVQDE 326 >gi|328545470|ref|YP_004305579.1| flagellar motor switch protein FliM [polymorphum gilvum SL003B-26A1] gi|326415211|gb|ADZ72274.1| Flagellar motor switch protein FliM, putative [Polymorphum gilvum SL003B-26A1] Length = 314 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 115/302 (38%), Gaps = 3/302 (0%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 + RL G + L + ++K IS + ++ + ++ Sbjct: 15 ITDRLLDAAGISVDRLPMLPVLFDRMARVFADAMRQKSTSPSYISVSCIENERIGDVLDE 74 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 ++ N + + W + +G + + T+++ L GA P RS S +E ++A+ Sbjct: 75 YEANALVAVLYSPEWDTRMLVGFDRDFIFTMIDVLFGADGTEPPIDEERSFSNIETRIAR 134 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + L + S E++ +E + N + + Sbjct: 135 SVFEVAAKALQESFSPIAETTLKIERVE--SRMDFAVVGRRNNPAVVARLLLQAIGRGGE 192 Query: 197 FVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 +++P TL + + + F + + V + + ++ TL + Sbjct: 193 IFVVMPHSTLNPLRQRLSQVLSGEMSGRDKQWTQHFQTEIQRTEVRLQAVLEERELTLGE 252 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L++GQ+I ++ L N + I++C LG++ +YT+++ D I+ ++ + + L Sbjct: 253 IANLQVGQIIELQATPRSPVKLECNQQPIFNCLLGQLDGSYTLQVEDLIHLEKDIVDDLL 312 Query: 316 HK 317 + Sbjct: 313 SR 314 >gi|87119476|ref|ZP_01075373.1| flagellar motor switch protein FliM [Marinomonas sp. MED121] gi|86164952|gb|EAQ66220.1| flagellar motor switch protein FliM [Marinomonas sp. MED121] Length = 322 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 88/273 (32%), Gaps = 6/273 (2%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + ++ + D+S Q KF +H+ + Sbjct: 49 RMPTLEMINERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRP 108 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 S LV L++N G ++ R + E ++ + + Q+ L + Sbjct: 109 LRSTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAW 167 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + L+ +E V ++ ++ + +P + Sbjct: 168 APVLSVE--LDYIGSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVR 225 Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ + + + + +LNV + + L+DV+ K G +IP Sbjct: 226 ELLDAGVQSDVDEKDDRWGKSLQQDVKELNVELSAAVAHVDVPLQDVLKFKAGDIIPVDI 285 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ANG +LG + Y++++ + Sbjct: 286 P--EFITVRANGLPTIKGKLGVSNEKYSVQVVE 316 >gi|114570494|ref|YP_757174.1| flagellar motor switch protein FliM [Maricaulis maris MCS10] gi|114340956|gb|ABI66236.1| flagellar motor switch protein FliM [Maricaulis maris MCS10] Length = 376 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 103/295 (34%), Gaps = 4/295 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 74 DKSGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 133 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S + + + + +NL+ ++++ LLG + ++ R +T+E+ Sbjct: 134 LNSIPLPAILAVFRAQQLDNYGLLTVDSNLIYSIVDVLLGGRRGTSAMRIEGRPYTTIER 193 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R I + Q + + +LE + + + + +E+ Sbjct: 194 MLVQRMIEVVLGDAKQAFAPLTDVEFDLERVET--NPRFAAIARPANAAILVKLRIDMED 251 Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL ++ + + A + + + + ++ ++ Sbjct: 252 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWSTKMEVQAVLDEQRV 311 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L V LK+G + + L + +GR+G N +R++ ++ Sbjct: 312 SLGTVANLKVGDTLYLDASPSSDVELRCGQVPLTRGRMGRIGHNVALRLSGPLSP 366 >gi|32266646|ref|NP_860678.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC 51449] gi|32262697|gb|AAP77744.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC 51449] Length = 353 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 103/304 (33%), Gaps = 6/304 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + L K + S+ + L M V+I S + + Sbjct: 37 VTLYDFKRPNRVSKEQLRAFKSIHDKMARSLSSQVSAVMRSIVEIQLHSVDQMTYGEFLM 96 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 S F+ S+ + + ++ +++ LLG + +R S +E L Sbjct: 97 SLPSPTSFNIFSMKPLEGAAILEINPSIAFPMIDRLLGGKGDPYE--SSREFSDIELNLL 154 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + Q+ L + S+ E P+++ + NE V + M + I + + Sbjct: 155 DTLLRQVMQNLKEAWSSITEIFPSVDAKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSG 212 Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + P +L S + + NV + + TL Sbjct: 213 MMSICYPVISLETVLSRLASRDLMLSDTSSKKSRNKELQALIAGANVIVSGYLGDATLTL 272 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 K+++ L++G ++ I+S +G+E Y +G T++I + I ++ +K Sbjct: 273 KEILDLQVGDIVRLDTIADDTIIVSVDGREKYIASIGLQRYRKTLQIKEVIKTEKDQVKE 332 Query: 314 FLHK 317 L Sbjct: 333 VLEM 336 >gi|330721397|gb|EGG99462.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC2047] Length = 329 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 48/306 (15%), Positives = 99/306 (32%), Gaps = 12/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + + + +F + + ++ Sbjct: 31 SQPPVDGGVKAYDLTSQDHIVRG------RLPTLEMINERFARFTEQSMFNLLRETPVVT 84 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 ++ KFS S + +LV+ L++ G Sbjct: 85 AAKIENIKFSEYTQMLGIPSSLSLVKIHPLRGTAMFVLDADLVVNLVDRFFGG-GVHDNA 143 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ ++ ++Q+ + Q T + E + + +E V Sbjct: 144 IGEREFTVTEQRIIQKVLSQVFVDMKQAWQTIMDID--FEYLSNEENPAMIKAISPSEVV 201 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240 + IE + IP L S Q +E + + R +V Sbjct: 202 VLSTFEIKIEEKGGRIQVAIPYSMLEPVREALDSGVQVDNEYTDGNWAEALQRDLRYASV 261 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I R+ +K TL++++ K G VIP E + IL ANG IY +G ++ ++I Sbjct: 262 PISCRVAERKITLREILNFKAGDVIPIDMPESS--ILMANGVPIYEAAVGASNEHLALKI 319 Query: 301 TDRINF 306 +I+ Sbjct: 320 KRQIDR 325 >gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus ATCC 12755] gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus ATCC 12755] Length = 336 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 10/299 (3%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + K + ++ +V + + + + IHS + Sbjct: 40 DFRRPTKLSKEYVNTLHMIFEDFSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPK 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL------YNRSLSTVEKK 133 + S I + L + L+E L G + +S + +E Sbjct: 100 FTLLGLFHSQPLSGIQMIEMNPQLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETA 159 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 + + +AQ V L+ + N NE V + + I V Sbjct: 160 ILEEVVAQFVRVYQNVWKDIVALDSVLDGIDT--NPQLMQNMSPNEPVVLVTFTIKIFEV 217 Query: 194 ASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L IP + + ++ ++D + + +N++ + + Sbjct: 218 KHFINLCIPYVFFEGIIDKLSFRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQM 277 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +L + + L+ G VI + +GK + + G+ I + D++ +Q+ Sbjct: 278 SLSEFLHLEEGDVIKLDKKITEPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQEL 336 >gi|329298601|ref|ZP_08255937.1| flagellar motor switch protein FliM [Plautia stali symbiont] Length = 269 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 82/259 (31%), Gaps = 4/259 (1%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 + DIS + + + + + L + S +LV + Sbjct: 2 ALFNLLRRSPDISVGAIKIQPYHEFARNLPVPTNLNLIHLQPLRGTALVVFSPSLVFIAV 61 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 +NL G ++ R + E+++ +R + + + Sbjct: 62 DNLFGGDGRFPTKVEGREFTHTEQRVIRRMLKLALEGYSDAWKAIYPLEVEYVRSE-MQV 120 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDL 227 N N+ V + I N+ F + IP + + ++ + S + Sbjct: 121 KFINITTSPNDIVVNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHW 180 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 D ++ + + L ++ LK+G V+P I +G + + Sbjct: 181 RDNLVKQVQHSELELIAHFAETSLRLSRILQLKLGDVLPIEKP--DRIIAHVDGVPVLTS 238 Query: 288 ELGRVGKNYTIRITDRINF 306 + G + Y +R+ +IN Sbjct: 239 QYGTLNGQYALRVEHQINP 257 >gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio acidaminovorans DSM 6589] Length = 335 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 7/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + L + V S + I S + V Sbjct: 48 SKDQLRAIQMIHDSFARQLTTSLSTLVRSMVSSEVVSVDQLAYDEFIRSLVQPTVIGVLE 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + S N + + +LV +++ +LG E I + R L+ +E+ + +R + +I L Sbjct: 108 MYPLSGNAVLEMNPHLVFAIIDRMLGGKGEPIRKP--RDLTDIERTVVERVMLKILEHLE 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + ST + E + V + + + + L IP + Sbjct: 166 ESWSTVVDIRFRFE--SMESNPFFVQICPGTDMVLLVTLKVQVGEAEGIMNLCIPYFVME 223 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + E + + ++ V + + +L DV+ L+ G V Sbjct: 224 PMIDKLSSQHWFASTGRKNVEGAREIIEARLSKVAVPVALELGHTVLSLGDVLQLREGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 I + L + + CE G K+Y R+ + ++ ++ Sbjct: 284 IRLDAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLEVLSSEE 327 >gi|255022053|ref|ZP_05294059.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] gi|254968539|gb|EET26095.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] Length = 366 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 45/309 (14%), Positives = 92/309 (29%), Gaps = 12/309 (3%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 PL + R+ ++ L + + + ++ DI S Q K+ Sbjct: 62 PLDLLNQDRM------NRSRMPTMEVLNDRFARSFRGSLFNYLRVNADIISLSAQIQKYG 115 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 I F SL+ + L ++E G + P+L R S +E Sbjct: 116 EYIGKIALPSYFVMVSLTPLRGSMLFIMDPYLCYAVIEAFFGGNGRLEPKLEGRDFSVIE 175 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ + I + P + + + S E V + +E Sbjct: 176 QRVFNKIIDHAVEDFTSAWEPIIKLRPKVLRSDVKS--QFVSIASSTEGVVGSVFEIEME 233 Query: 192 NVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 + IP T+ +S V++ + + Sbjct: 234 RWSGKLYTCIPYNTVEPLREQLVSGVAADQSEMDPSWKQMLHMDIQNAMVDVSVILASQD 293 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR-ITDRINFDQK 309 L TL+ G V+ F + A + I G Y ++ ++ R ++ Sbjct: 294 IPLSRARTLQKGDVLSFDRVQD--ARVYVEDILIGEGRYGAFKNQYAVKLVSYRTPSEED 351 Query: 310 SLKNFLHKR 318 L++ K+ Sbjct: 352 VLQSIRLKK 360 >gi|224370777|ref|YP_002604941.1| FliM [Desulfobacterium autotrophicum HRM2] gi|223693494|gb|ACN16777.1| FliM [Desulfobacterium autotrophicum HRM2] Length = 326 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 88/286 (30%), Gaps = 3/286 (1%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 T + + + + + + +VD++ + KF+ + S Sbjct: 40 DFTSQDKVVRARMPTFDVINERLSREIRTSLSGLLQTNVDVTANPLDTLKFTEFVRSLPV 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + + + LV L++ G ++ R + +E+ + K+ + Sbjct: 100 PTSLHVFRMEPLRGHGLVVLESQLVYNLIDTFFGGEGLGKARVEGREFTAIEEVMIKKVV 159 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + + + +L + L + V + +E A + VL Sbjct: 160 VACLKDIEKAWLPIEPVKTSLIRSEM--NPQFAAIVLPTDLVIVTRFEIELEQAAGNLVL 217 Query: 200 IIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 +P + S Q ++E + VN+ ++ + + + ++ Sbjct: 218 CLPYAMIEPLRAKLASGFQAETEEIDVAWRKRLQEIILESTVNLRVQLGTTEISGERLIY 277 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L+ G VI + K +G G R+ ++ Sbjct: 278 LQPGDVIQLDNDAKDMLTGYVDGLPKVRGFAGVQRGFQAFRVEKKL 323 >gi|254470104|ref|ZP_05083508.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] gi|211960415|gb|EEA95611.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] Length = 409 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 100/298 (33%), Gaps = 4/298 (1%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + L + + + + +V++S S + +F Sbjct: 97 GDEGGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSMTNVRFGD 156 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVE 131 ++S + W + ++L+ ++++ LLG + ++ R +T+E Sbjct: 157 YLNSIPLPAILGVFKAKEWDGFGLVTVESSLIYSIIDVLLGGGRGSSPTRVEGRPYTTIE 216 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 L +R I I Q S LE + + + + +E Sbjct: 217 SNLVRRMIEIILLDAEQAFGPLSPVSFPLERLET--NPRFAAISRPANAAIMVELRIDME 274 Query: 192 NVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 + +++P TL + L + + + A + Y V +D + Sbjct: 275 DRGGKVEIVLPYATLEPIRDLLLQMFMGEKFGRDPIWEEHLATEVYSSEVQVDAVLYENT 334 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L+ V+ L++GQ + F + + G ++ +G V +I I+ ++ + Sbjct: 335 IPLQRVLNLEVGQTLLFDTGPRDPVQVKCGGVQLTEGLMGHVDDRISIEISKKLKQPK 392 >gi|168334557|ref|ZP_02692713.1| flagellar motor switch protein FliM [Epulopiscium sp. 'N.t. morphotype B'] Length = 327 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 86/291 (29%), Gaps = 6/291 (2%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 + + +G Y + + + M V I S ++ FS S Sbjct: 41 FARPTKFSREHLRTLELMGENYARLISQYLSGLMRTLVPIKVVSSEAITFSDFTSSLSNP 100 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 + +N + S N+ LE LLG + + R +++E + R + Sbjct: 101 IALAIVDPYPLKNNMLLELSTNVAFAFLERLLGGEGTELEHV--REFTSIELVILIRVLE 158 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 + + P + + E V I ++ V L Sbjct: 159 HFVDYMREPWENMVALKPRMSRVET--NSQILNMIAPTEMVALITFSIQFGAVDGLMNLC 216 Query: 201 IPQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 IP T+ +S + + + + N+ + + T+K+ + Sbjct: 217 IPYLTVEPIMDKLNTSYQFQSSDDKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIE 276 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L+IG +I + + + G ++I ++ + Sbjct: 277 LQIGDIIRLDTTIDSLIDVYVGNVVKFKAVPGIHKNKSAVQIKQILDKEDD 327 >gi|39995529|ref|NP_951480.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA] gi|39982292|gb|AAR33753.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA] gi|298504529|gb|ADI83252.1| flagellar motor switch protein FliM [Geobacter sulfurreducens KN400] Length = 328 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 96/282 (34%), Gaps = 4/282 (1%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K + + + ++ ++ V+I S KF I + + Sbjct: 47 KGLVPNLDIIYDGFIRYQRGTLSNRLGRIVEIKKLGAGSYKFDDFIQTLPSPVCMAIYKA 106 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQL-YNRSLSTVEKKLAKRTIAQISAVLN 147 I + LV T+++ +LG + T Q NR +++E +L ++ + + L Sbjct: 107 DPLKGAALIAFDSTLVFTIVDCILGGTGMTSVQTSANRMFTSIELRLVQKIVQDMLVDLE 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + +L + V T+ M + I+ + V +P T+ Sbjct: 167 KAWAPLYAAKMSL--LRMEMNPRLVNIVPPEYQVVTMEMQIQIDQLEGKMVFAVPYMTIE 224 Query: 208 KTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 +Q +++ + +++ + +L D+++L G I Sbjct: 225 PIRDKLKSGAQFDLMAIDPQWSFRLSKELLEAPLDVSVEVGGAVISLNDLLSLVPGDTIM 284 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + G ++ G N ++IT+ + + Sbjct: 285 LDTPCTSDLTVKVGGVPKFTGMPGIRHGNKALQITNVVGKGE 326 >gi|83858803|ref|ZP_00952325.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] gi|83853626|gb|EAP91478.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] Length = 385 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 102/294 (34%), Gaps = 4/294 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 83 ERSGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 142 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S + + + + +NL+ ++++ LLG + ++ R +T+E+ Sbjct: 143 LNSIPLPAILAVFRAKQLDNYGLLTVDSNLIYSIVDVLLGGRRGTSAMRVEGRPYTTIER 202 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R I + A Q + E +L+ + + + + +E+ Sbjct: 203 TLVQRMIEVVLADARQAFAPLTEVDFDLDRVET--NPRFAAIARPANAAILVKLRIDMED 260 Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL ++ + + A + + + + ++ + Sbjct: 261 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWESHLATELWSTKMEVSAVLDEMQK 320 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L +V+ LK+G + L + +GR+G N +R+ ++ Sbjct: 321 PLGEVMQLKVGDTLMLDAGPDGLIELRCGTVPLAHGHMGRIGHNIGVRLDRPLS 374 >gi|167645399|ref|YP_001683062.1| flagellar motor switch protein FliM [Caulobacter sp. K31] gi|167347829|gb|ABZ70564.1| flagellar motor switch protein FliM [Caulobacter sp. K31] Length = 377 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 33/288 (11%), Positives = 94/288 (32%), Gaps = 4/288 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 75 DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 134 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S + + + + +NL+ ++++ LLG ++ R +T+E+ Sbjct: 135 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 194 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R + + S L+ + + + + +E+ Sbjct: 195 VLVQRMVEVVLHDAKAAFEPLHPVSFTLDRLET--NPRFAAIARPANAAILVKLRIDMED 252 Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL ++ + + A + + + + ++ ++ Sbjct: 253 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQL 312 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 L V+ LK+G + + L A + +GR + +R Sbjct: 313 PLSRVLDLKVGDTLMLNATTDSLVELRAGSIPLTRGRMGRRNHSIAVR 360 >gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2] gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2] Length = 332 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 94/299 (31%), Gaps = 10/299 (3%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 K + + K + ++ +V + + + + IHS + Sbjct: 36 DFRRPTKLSKEYVNTLHMIFEDFSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPK 95 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL------YNRSLSTVEKK 133 + S I + L + L+E L G + +S + +E Sbjct: 96 FTLLGLFHSQPLSGIQMIEMNPQLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETA 155 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 + + +AQ V L+ + N NE V + + I V Sbjct: 156 ILEEVVAQFVRVYQNVWKDIVALDSVLDGIDT--NPQLMQNMSPNEPVVLVTFTIKIFEV 213 Query: 194 ASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L IP + + ++ ++D + + +N++ + + Sbjct: 214 KHFINLCIPYVFFEGIIDKLSFRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQM 273 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +L + + L+ G VI + +GK + + G+ I + D++ +QK Sbjct: 274 SLSEFLHLEEGDVIKLDKKITEPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQKL 332 >gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 49/316 (15%), Positives = 120/316 (37%), Gaps = 7/316 (2%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 QS + + + RL G + + + + + ++K IS + Sbjct: 9 QSTSNSERAM---ITDRLLDAAGISVDRLPMLPVVFDRMARLMADVMRQKSPSPSYISVS 65 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 ++ + ++ F+ N + + W + +G + + TL++ L GA P Sbjct: 66 YVENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDE 125 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R S +E ++A+ + L + + E++ +E + SN Sbjct: 126 ERPFSNIETRIARTIFEIAAKSLAESFAPIAETTLKIERIE--SRMDFAVVGRSNNPAVV 183 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242 + +++P TL + + + F + + V + Sbjct: 184 GRLLQQAIGRGGEVFVVLPHATLNPLRQALSQVLSGEMSGRDKQWTQHFHNEIQRTEVKL 243 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + ++ L ++ LK+GQVI ++ L+ N + I++C+LG++ +YT++I + Sbjct: 244 EAILEEREMHLGELSNLKVGQVIELQATARSPVTLACNDQPIFTCQLGQLDGSYTLQIEE 303 Query: 303 RI-NFDQKSLKNFLHK 317 I ++ + ++ Sbjct: 304 LIHEEEKDLFDDLRNR 319 >gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] Length = 331 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 97/275 (35%), Gaps = 7/275 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + Y + + ++ +V + S + + IHS + + + Sbjct: 48 SKDHIRTLELIHDNYARIISSYLTAQVRSNVKVKIESVEQTTYEEFIHSIQNPTILTVFK 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + N + V +++ LLG + E + NR + ++K + R + + L Sbjct: 108 MPPLAGNILFETNPQFVYQIIDILLGGTGE--GKYKNREFTDIDKNIITRINEGLISNLK 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 S E +P +E N +E V I + I + + IP + Sbjct: 166 LAWSEVLEVNPEIETIET--NPALNQTLAPHEPVALIIFTIEIGESRTYINICIPFICIE 223 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 K + S+ + E + K + + + + T++D + L +G V Sbjct: 224 KYLDHLEIKHWYHDSSDEEDEVTKEYLRMKLDSVQLVSEVILGNASVTVEDFLNLTVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + + + + + G +GK ++ Sbjct: 284 VTLERKFEDPLEVVIEERPHFLAKPGIIGKKTGVQ 318 >gi|222823278|ref|YP_002574851.1| flagellar motor switch protein FliM [Campylobacter lari RM2100] gi|222538499|gb|ACM63600.1| flagellar motor switch protein FliM [Campylobacter lari RM2100] Length = 363 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L M V+I S + + S F+ S Sbjct: 51 SKEQLRSIKGIHDKLARNLASQISSMMRSIVEIKLHSVDQMTYGEFLMSLPSPTSFNVFS 110 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + ++ +++ LLG ++ L R L+ +E L + I L Sbjct: 111 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSFDTL--RELTEIELNLLDSILRIIMQRLK 168 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P++E + NE V + M + I N + + P L Sbjct: 169 ESWMNVTEIYPSVEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 226 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + V + + + + + LK G ++ Sbjct: 227 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVIYEAMLGKTFINVNEFLDLKQGDIL 286 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 AI++ + KE++ ++G +I+I + I D+ +K L K Sbjct: 287 KLDRSADDKAIVAIDKKEVFLAQVGLHRFRKSIKILELIKTDKDEIKEMLEK 338 >gi|134300220|ref|YP_001113716.1| flagellar motor switch protein FliM [Desulfotomaculum reducens MI-1] gi|134052920|gb|ABO50891.1| flagellar motor switch protein FliM [Desulfotomaculum reducens MI-1] Length = 330 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 98/277 (35%), Gaps = 7/277 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K + L Y + L + + I S + I+S V + SL Sbjct: 49 KEQLRTLHVLHEGYARLLSNFLSGYLRTPITIEIASIGQFTYEEFINSVPSPTVMTIFSL 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + + +++ G E P+ R L+ +E ++ R I ++ L Sbjct: 109 APLKGSALMETNLQFLFPIIDLQFGGLGEMPPKT--RELTDIELSVSNRIIKRLLDHLTI 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI-ENVASSFVLIIPQETLL 207 SP +E + N+ V I + + E V L +P L Sbjct: 167 SWKDIMSVSPKVESIDA--NPHLHQLMSPNDIVVVITFSTGVAEEVRGLINLCLPYSLLD 224 Query: 208 KTTLI--SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + K+ Q + + + +V I + + T+KD + L++G V+ Sbjct: 225 PILSKFSMANQFTKTTEQDQKELMALEYWLGESDVAISVVMGEAQITVKDFLQLQVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 P + + + Y ++G VG++ +++T Sbjct: 285 PLGRGLTQDLDMYVDEELKYKVQVGTVGQSLAVQVTS 321 >gi|208434362|ref|YP_002266028.1| flagellar motor switch protein [Helicobacter pylori G27] gi|208432291|gb|ACI27162.1| flagellar motor switch protein [Helicobacter pylori G27] Length = 334 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 9 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 68 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 69 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 126 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 127 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 184 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 185 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 245 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 304 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 305 SEKERTKEILEM 316 >gi|242281039|ref|YP_002993168.1| flagellar motor switch protein FliM [Desulfovibrio salexigens DSM 2638] gi|242123933|gb|ACS81629.1| flagellar motor switch protein FliM [Desulfovibrio salexigens DSM 2638] Length = 326 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 93/302 (30%), Gaps = 10/302 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 R+ + + + + M VDI+ S Sbjct: 32 DSGVVSFDLANQDRIIRG------RMPVLEIVNDRFARLATNNLANTMRKRVDINPISID 85 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 KF + S S + N + + LV L+E+ G S ++ R Sbjct: 86 MSKFGDFMRSLPVPTSLSIFKMDPLRGNAILVVDSRLVFALVESFFGGSGSQP-KVEGRD 144 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + +E+ + R + + L E L + ++ V I Sbjct: 145 FTPIEQAIVDRVVKIALSNLEDSWRPVHEVHLELVR--SEVNPQFAAIVPPSDVVVVITF 202 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +EN S ++ +P TL S Q++ + F + + V++ R Sbjct: 203 EVELENAIGSLIVCLPYSTLEPIRSKLHASFQSERLEIDHVWVSRFKERLLETPVDLLVR 262 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + K T + ++ L+ G ++ E+ G Y GRV N +I I Sbjct: 263 LGKTKITGRQLLNLEEGDLLLLDTDEEDMLECEVGGVLKYLGSPGRVKANRAFQIAQAIE 322 Query: 306 FD 307 Sbjct: 323 PK 324 >gi|291519586|emb|CBK74807.1| Flagellar motor switch protein [Butyrivibrio fibrisolvens 16/4] Length = 272 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 96/275 (34%), Gaps = 7/275 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 + Y + L + ++ + + ++ + +S + + +N Sbjct: 2 EIIFEHYGRLLSTNLPIFLRKNIQVEVINSEAVTYMEFSNSLSNPVLLGIVDFAPLETNI 61 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + ++NL +++ +LG E + ++ R S +E + +R + +L + + Sbjct: 62 IVEMASNLGFAMVDRMLGGVGEPLDKV--RDFSEIELLIIERVMTSCVELLREPWENVLD 119 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL- 214 + P LE + +E + + +N+ I +V + +P TL Sbjct: 120 AHPRLERIET--NSQFAQIISPSEMIAIVTLNIKIGDVEGLMNICLPFITLEPVMDKLNT 177 Query: 215 --SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 ++ E D + + + + T+ D L++G ++ + Sbjct: 178 KFWYSSQKEKTGASFSDTVEALISRAKIPVKAVLGNSVITVADFSQLQVGDIVKLDTKVD 237 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + ++ G GK Y +R+T I + Sbjct: 238 EELDVFVGDIRKFAALPGASGKEYAVRVTQIIREE 272 >gi|323490151|ref|ZP_08095371.1| flagellar motor switch protein FliM [Planococcus donghaensis MPA1U2] gi|323396199|gb|EGA89025.1| flagellar motor switch protein FliM [Planococcus donghaensis MPA1U2] Length = 327 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 93/299 (31%), Gaps = 13/299 (4%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 +N R + + S + + + L F ++ V + Sbjct: 29 RNVQAYDFKKALRF------SQDQIRTLSRIHENFSRLLSSYFSAQLRTYVQVGVEVVAE 82 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + ++ + + + + S N+V + + LLG + + L Sbjct: 83 ISYEEFVENVQKKSMLGVFEAAPLQGSMVMEFSPNVVHVMFDRLLGGQGHVLEKDS--EL 140 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + +E + +R A+ + + + SP L + T NE V + + Sbjct: 141 TEIEISVIERVFAKALDCFQEAWLSVVKLSPEL--KEIEVNSQFLTTSPPNETVILVKLQ 198 Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 I NV + +P L + N+ + + K + + I Sbjct: 199 TKIGNVEGVINICLPHVVLEQILPKLSAKHWLANQKKAIEAHEVVALEEKLHGTKMEIKA 258 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + D + LK G VI + L + K + + G I++T+ Sbjct: 259 VLGQSMIEFGDFLNLKKGDVIRLDESYDSPVTLQVDNKLKFYAQPGVSKGRMAIQVTEV 317 >gi|197104384|ref|YP_002129761.1| flagellar motor switch protein FliM [Phenylobacterium zucineum HLK1] gi|196477804|gb|ACG77332.1| flagellar motor switch protein FliM [Phenylobacterium zucineum HLK1] Length = 358 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 101/281 (35%), Gaps = 4/281 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + + + + +V++S + S +F ++S + S Sbjct: 70 SYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILSVFR 129 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 ++ + +NL+ ++++ LLG ++ R +T+E+ L +R + + A Sbjct: 130 AEELNNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMVEVVLADA 189 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + S L+ + + + + +E+ L++P TL Sbjct: 190 REAFEPLTPVSFTLDRLET--NPRFAAIARPANAAILVKLRIDMEDRGGRIELLLPYATL 247 Query: 207 LKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 ++ + + A + + N+ + ++ ++ +L+ V+ LK+G + Sbjct: 248 EPIRKMLLQQFMGEKFGRDNIWESHLATELWTTNMEVRAVLDEQQVSLQKVLDLKVGDTL 307 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + L A + +GR + +R+ ++ Sbjct: 308 MLNATPDSLIELRAGAIPLTRGRMGRRNHHIAVRVEAPLSP 348 >gi|329849711|ref|ZP_08264557.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum C19] gi|328841622|gb|EGF91192.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum C19] Length = 388 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 101/290 (34%), Gaps = 4/290 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 84 ERSGIRAIINSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 143 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132 ++S + + + + +NL+ ++++ LLG ++ R +T+E+ Sbjct: 144 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIER 203 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R + + Q + NL+ + + + + +E+ Sbjct: 204 VLVQRMVEVVLNDARQAFEPLTAVNFNLDRLET--NPRFAAIARPANAAILVKLRIDMED 261 Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL ++ L + + A + + + + ++ ++ Sbjct: 262 RGGRIELLLPYATLEPIRKMLLLQFMGEKFGRDNIWESHLATELWTTQMEVRAVLDEQQV 321 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L V+ LK+G+ I + + L + + +GR G + +R+ Sbjct: 322 PLSRVLNLKVGETIVLNAQADSPVQLRCGQIPLTTGRMGRKGHSIAVRVD 371 >gi|268678938|ref|YP_003303369.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum DSM 6946] gi|268616969|gb|ACZ11334.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum DSM 6946] Length = 353 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 103/310 (33%), Gaps = 6/310 (1%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + + ++L K + + + L M V+I S Sbjct: 25 SSELDNTESKQVILYDFKRPNRVSKEQLRAVKGIHDKMARNLASQISAIMRSIVEIQLHS 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + S F+ S+ N I + ++ +++ LLG E+ Sbjct: 85 VDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCIIEINPSIAFPMIDRLLGGLGESYE--AT 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R L+ +E L + I L + + + P +E + NE V + Sbjct: 143 RELTDIELNLLDAILRIIMQRLKEGWAPITDMYPAIETKESSPNV--VQIVSQNEIVIMV 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNI 242 M + I N + L P L + + + + V Sbjct: 201 VMEIIIGNSSGMINLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKELNTLISRAEVFN 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + I + ++ +++ LK G ++ AI+ + KE++ E+G + +I+I Sbjct: 261 EAIIGQAELSVGELLELKKGDIVRLDRAADDKAIVMIDKKELFLAEIGLHRFHKSIKIER 320 Query: 303 RINFDQKSLK 312 + D+ +K Sbjct: 321 LVKTDKDEVK 330 >gi|109947667|ref|YP_664895.1| flagellar motor switch protein FliM [Helicobacter acinonychis str. Sheeba] gi|109714888|emb|CAJ99896.1| fliM [Helicobacter acinonychis str. Sheeba] Length = 354 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 103/312 (33%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ +P + L K + S+ + L M V+I S Sbjct: 29 KDITPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNRELQALLSSVSVDMIVL 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKEHTKEILEM 336 >gi|323703196|ref|ZP_08114849.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans DSM 574] gi|323531855|gb|EGB21741.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans DSM 574] Length = 330 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 7/286 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K + L Y + L + + I S + I+S V + SL Sbjct: 49 KEQLRTLQVLHEGYARLLSNFLSGYLRTTITIEVASIGQFTYEEFINSVPTPTVMTIFSL 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + + L++ G S + ++ R L+ +E +A R I ++ L Sbjct: 109 SPLKGTALMETNLQFLFPLIDLQFGGSGDMPMKV--RELTDIELSVANRIIKRLLDHLTV 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207 +P +E + N+ V + + + N V + +P L Sbjct: 167 TWKDIATITPKIESIDA--NPHLHQLMSPNDIVAVLTFSTAVGNEVKGLINMCLPYNFLD 224 Query: 208 KTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + Q E ++ + +V I + ++KD + L++G V+ Sbjct: 225 PVLAKFSAANQFTRDNEQKEQDLEALEFWLGESDVEISVVVGETDISVKDFLQLQVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 P + + + Y ++G VG++ +++T + + Sbjct: 285 PLARGFNQDLDMYVDNELKYKVQVGTVGQSLAVQVTSLAEEAWEIV 330 >gi|149179192|ref|ZP_01857759.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797] gi|148841965|gb|EDL56361.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797] Length = 349 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 5/293 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + +L + + + +++ S +S + S + F+ Sbjct: 53 SKEQMRAFRALHESFSREFGAALSGMLRSIIEVKLISVDQLTYSEFVFSLENPTCFNLLE 112 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + S +++ +++ LLG + NR+L+ +E +L R + Sbjct: 113 SETLDGHIILDISPSIIFPIIDRLLGGDGHSHGAYPNRALTEIEIRLVSRITGLAIEGIE 172 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 S + + + NE + I+ +T+ L IP T+ Sbjct: 173 SAWSNLCDWKLRVS--QVESNPQLVQIVPPNEVIVLISFEVTMGETRGIINLCIPFNTIE 230 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S K ++ + + + ++ K T +V+ L +G V Sbjct: 231 PLSNKLTSDTWSAYKKKSPDLRQQLNLEASVSKSKIAMRVELDNSKLTAGEVLNLAVGDV 290 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 I + G +++ G + I I + + ++ L K Sbjct: 291 IMCNKGSAQSLTVELEGSPVFTAFPGVYKGHKAISIEKMLAIPRDVIEERLKK 343 >gi|170741398|ref|YP_001770053.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] gi|168195672|gb|ACA17619.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] Length = 303 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 113/303 (37%), Gaps = 3/303 (0%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + RL G + + + K + S S +SG F ++ Sbjct: 3 DVRDRLLDASGLSPDRLPMLNVIFDRLATACADNLKHLAVSPIFYSLMSVESGLFGDLLE 62 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ N V W + +G + V T++E LLGA P R+ S++E ++A Sbjct: 63 PYEANAVVGIFYSPQWDGHLLVGLDRDFVFTMVEVLLGADGSEPPVEEARNFSSIELRIA 122 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + T QI L + ++ LE + + + N Sbjct: 123 QMTFEQIGKALEAAFALVSVATLKLERTET--RMDFAIIGRRSNKAVAAKFLLQALNRGG 180 Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 LIIPQ L +S ++ + + + V + + + TL Sbjct: 181 EMFLIIPQAVLNPMRQSLSKVLTGESTSRDPRWEKQISTEVRKTEVTLRAVLEERTLTLG 240 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ LK+GQV+ ++ L N + ++ C++G+ Y +R+ D+I+ D++ + Sbjct: 241 EIADLKVGQVLTLDATPRSRVKLQGNDQALFWCQVGQANGAYVLRVEDQIDQDKEFMDGV 300 Query: 315 LHK 317 L + Sbjct: 301 LAR 303 >gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5] gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5] Length = 329 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 99/306 (32%), Gaps = 13/306 (4%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 K S R+ K + +L + + + D++ S Sbjct: 33 TKKKVSLYDFKRPDRV------SKDQMRSIKNLHDKFARNFSSSLSGYLRSITDMNLISV 86 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + S F+ S+ N + + +LV +++ LLG E I ++ R Sbjct: 87 DQMTYGEFLMSLPNPTSFNIISMLPLDGNAVLEVNPSLVFPIIDKLLGGQGEPIDEV--R 144 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 ++ +E+ + +A L + +E NE V + Sbjct: 145 EITDIEQNVIGGVLAIALRELAEVWQPIINIRFKIELRET--SPHVIQIVSQNEVVILLV 202 Query: 186 MNMTIENVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + + +V+ + IP L + + + + N+ Sbjct: 203 FEIKVGDVSGMMNICIPAIVLEPIMQKIDSQDWLIGAKKMHATANVQQITSIVSKSRTNL 262 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + TL++++ L+IG ++ + + +L + Y E+G + N +I Sbjct: 263 QAVLGESTMTLREILDLEIGDILTLSTKVRDPMVLQVGDMKKYYGEIGIIDNNKAFKIHR 322 Query: 303 RINFDQ 308 +I + Sbjct: 323 KIVKED 328 >gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM 12809] gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM 12809] Length = 336 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 51/305 (16%), Positives = 102/305 (33%), Gaps = 12/305 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K S R+ K + +L + + + DI+ TS Sbjct: 36 KKISVYDFRRPDRV------SKEQLRSIRNLHDKFARNFSSTLSNYLRTITDITLTSVDQ 89 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S + F+ S+ N + + +LV +++ LLG + + + Q R L Sbjct: 90 MTYGEFLMSLPDPTSFNIISMIPMEGNAVLEINPSLVFPIVDKLLGGTGKPLFQT--REL 147 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 +++E+ + + I L + + L+ + NE V + Sbjct: 148 TSLEQHIMDGILGLILKDLEEVWRQIIP-NIRLKKELSENSPHIIQIVSQNEVVILVVCE 206 Query: 188 MTIENVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + V L IP L S + + D V Sbjct: 207 VKFGEVLGMMNLCIPAIVLEPVLGKISSSDWLIGAKKGLQGEKEDEIMHMLNDTEVPTSI 266 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + K T++DV+ L+ G ++ F ++ + N K+ + E+G +G ++IT I Sbjct: 267 YLGHNKLTIEDVLGLQNGDLVMFNVKQDRPVEIHFNNKQKFLGEVGTLGVKKAVKITQFI 326 Query: 305 NFDQK 309 Sbjct: 327 TESDD 331 >gi|332702324|ref|ZP_08422412.1| flagellar motor switch protein FliM [Desulfovibrio africanus str. Walvis Bay] gi|332552473|gb|EGJ49517.1| flagellar motor switch protein FliM [Desulfovibrio africanus str. Walvis Bay] Length = 325 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 93/299 (31%), Gaps = 10/299 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 R+ + + + + M VD++ S Sbjct: 30 QEDDGAVTFDLSNQDRIIRG------RMPVMEIINDRFARLATNALANAMRKRVDVNPIS 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 KF + S + + N + LV L+EN G S ++ Sbjct: 84 IDMSKFGDFMRSLPVPTSINIFKMEPLRGNALCVVDSRLVFALVENFFGGSGTQP-KVEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + +E+ + + + + + + E ++E + +E V + Sbjct: 143 RDFTHIEQAIIGKVVDLALTNMEEAWAPVHEV--HIELIRAEINPQFAAIVPPSEVVVVV 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + +EN SF++ +P T+ S Q++ I F + + V + Sbjct: 201 TYEVELENAIGSFIVCLPYATIEPIRAKLYASFQSERLEVDHAWISRFKERLMETPVEMV 260 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 R+ T + ++ + IG ++ + +G + GRV N ++ Sbjct: 261 VRMGKTSITGRQLLNMDIGDILLLDTDVDDLLVAEVDGVRKFHGIPGRVKGNRAFQVLK 319 >gi|224373367|ref|YP_002607739.1| flagellar motor switch protein FliM [Nautilia profundicola AmH] gi|223588573|gb|ACM92309.1| flagellar motor switch protein FliM [Nautilia profundicola AmH] Length = 356 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 97/292 (33%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + ++ + L M V+I S + + S F+ S Sbjct: 51 SKEQLRSIRAIHDKMARSLASDISSLMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 110 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L I + ++V +++ LLG S R + +E L + + ++ + Sbjct: 111 LKPLDGKGVIELNPSIVFPMIDRLLGGSGAPFETT--REFTDIELNLLDQILKVVTQNMK 168 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + P +E + NE V + M + I + + P T+ Sbjct: 169 EVWSPIMDLYPIIEAKESSPNV--VQIVAQNEIVIMVIMEIIIGQTSGMMNICYPVITIE 226 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + + +K V+ L++G +I Sbjct: 227 SLLPRLANRDLMLNETSGRKSRNKELRALLRGAKIELEAVLGYAELNMKQVLDLEVGDII 286 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 I+ +G+E + E G +I+I + + + +K L K Sbjct: 287 KLNRPADDTVIVKVDGREKFIAEFGVRRYRRSIKIKEILKTEHDEIKEILQK 338 >gi|207092363|ref|ZP_03240150.1| flagellar motor switch protein FliM [Helicobacter pylori HPKX_438_AG0C1] gi|317012255|gb|ADU82863.1| flagellar motor switch protein FliM [Helicobacter pylori Lithuania75] Length = 354 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + I Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|148266212|ref|YP_001232918.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4] gi|146399712|gb|ABQ28345.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4] Length = 328 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 92/268 (34%), Gaps = 3/268 (1%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 + + ++ ++ VDI ++ KF + + + + Sbjct: 56 IYDGFIRYNRVTMSNRLGKMVDIKKDGARTYKFDDFLQILPSPVCMAIYKIEPLKGAALV 115 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 N LV T+++++LG + NR + +E +L ++ + + + + Sbjct: 116 AMDNTLVFTIVDSILGGTGAPSIPSNNRLFTPIELRLMEKIVKDALVDMEKAWAPLLAVK 175 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 NL + S V T+++ + IE + +L +P T+ S Sbjct: 176 MNL--LRMEMNPRLVNIVPSEYQVVTMSLKIQIEETVGTMILAVPYMTIEPVRDKLKSGM 233 Query: 218 N-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + + + I + TL +++ L G I +R ++ + Sbjct: 234 QVDMMAVDPQWSYRLSEELAEAPLEISVEMGNSVITLDELLNLAPGDTIMLNNRGRSELL 293 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304 + G ++ G N ++I+ + Sbjct: 294 VKVGGVNKFTGIPGVRDGNKAVKISRIL 321 >gi|217031646|ref|ZP_03437151.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128] gi|298736644|ref|YP_003729170.1| flagellar motor switch protein FliM [Helicobacter pylori B8] gi|216946846|gb|EEC25442.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128] gi|298355834|emb|CBI66706.1| flagellar motor switch protein FliM [Helicobacter pylori B8] Length = 354 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + I Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|189426342|ref|YP_001953519.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ] gi|189422601|gb|ACD96999.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ] Length = 331 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 97/271 (35%), Gaps = 4/271 (1%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 + + +F ++ V+I +S KF + + + L I Sbjct: 56 VYDGFIRFNRITLSNRLRKVVEIKKVGARSYKFDDFLQTLPSPVCMAIFKLDPLKGAALI 115 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 ++L +++++LG + T L NR +T+E +L + +A + A L + + + Sbjct: 116 AMDSSLAFAIVDSVLGGTSRTALAL-NRLFTTLELRLVEMVLADVLADLEKSWAPLYPAK 174 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSS 216 +L + T V T+ + + IE + + ++P T+ Sbjct: 175 LSL--LRMEMNPRLVTIVPPEYQVVTMTVKVHIEENVGTMIFVVPIMTIEPIRDKLKEGM 232 Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q + + + + + +L++++ L++G I + + Sbjct: 233 QFDLMAIDPQWSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDKPCTSELL 292 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G Y G N ++I+D I+ Sbjct: 293 VKVEGVPKYQGIPGIRHGNKAMQISDIISTK 323 >gi|317013858|gb|ADU81294.1| flagellar motor switch protein FliM [Helicobacter pylori Gambia94/24] Length = 354 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|15611461|ref|NP_223112.1| flagellar motor switch protein FliM [Helicobacter pylori J99] gi|4154924|gb|AAD05972.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] gi|307637112|gb|ADN79562.1| flagellar motor-switch protein [Helicobacter pylori 908] gi|325995703|gb|ADZ51108.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997299|gb|ADZ49507.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 354 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|322379819|ref|ZP_08054116.1| flagellar motor switch protein FliM [Helicobacter suis HS5] gi|321147787|gb|EFX42390.1| flagellar motor switch protein FliM [Helicobacter suis HS5] Length = 353 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 101/291 (34%), Gaps = 6/291 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + S+ + L M V+I S + + S F+ S Sbjct: 49 SKEQLRSFRSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + ++V +++ LLG Q+ R S +E L + Q+ +L Sbjct: 109 MKPVGGNGILEVNPSIVFPMIDRLLGGKGSAYDQM--REFSDIELNLLDTILKQVMQILK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S E P ++ + NE V + M + I + L P ++ Sbjct: 167 EIWSPVTEFYPTIDAKESSANV--VQIVAQNEIVIMVVMEIVIGHSRGMMNLCYPVISIE 224 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + +V++ + + TLK+V+ L +G I Sbjct: 225 GILSKMGNRDVMLTETSSKKSRNKELQALVGGASVDVAAFLGGVQLTLKEVLDLVVGDTI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +++ + KE Y +G G TI+I + I ++ +K L Sbjct: 285 RLNKVANDVVVVNIDKKERYLATVGYKGYRKTIQIKEVIQTEKDRVKEILE 335 >gi|322378965|ref|ZP_08053379.1| flagellar motor switch protein FliM [Helicobacter suis HS1] gi|321148641|gb|EFX43127.1| flagellar motor switch protein FliM [Helicobacter suis HS1] Length = 353 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 101/291 (34%), Gaps = 6/291 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + S+ + L M V+I S + + S F+ S Sbjct: 49 SKEQLRSFRSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + ++V +++ LLG Q+ R S +E L + Q+ +L Sbjct: 109 MKPVGGNGVLEVNPSIVFPMIDRLLGGKGSAYDQM--REFSDIELNLLDTILKQVMQILK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S E P ++ + NE V + M + I + L P ++ Sbjct: 167 EIWSPVTEFYPTIDAKESSANV--VQIVAQNEIVIMVVMEIVIGHSRGMMNLCYPVISIE 224 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + +V++ + + TLK+V+ L +G I Sbjct: 225 GILSKMGNRDVMLTETSSKKSRNKELQALVGGASVDVAAFLGGVQLTLKEVLDLVVGDTI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +++ + KE Y +G G TI+I + I ++ +K L Sbjct: 285 RLNKVANDVVVVNIDKKERYLATVGYKGYRKTIQIKEVIQTEKDRVKEILE 335 >gi|254779108|ref|YP_003057213.1| flagellar motor switch protein FliM [Helicobacter pylori B38] gi|308184220|ref|YP_003928353.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180] gi|254001019|emb|CAX28963.1| Flagellar motor switch protein FliM [Helicobacter pylori B38] gi|308060140|gb|ADO02036.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180] Length = 354 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + I Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|210134611|ref|YP_002301050.1| flagellar motor switch protein FliM [Helicobacter pylori P12] gi|210132579|gb|ACJ07570.1| flagellar motor switch protein [Helicobacter pylori P12] Length = 354 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + I Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|188579889|ref|YP_001923334.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] gi|179343387|gb|ACB78799.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] Length = 335 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 105/301 (34%), Gaps = 3/301 (0%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 L AR+ G + S + K S + +SG+F + Sbjct: 36 DLRARIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHFAASSTFYSLSGVESGRFGEFLD 95 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ N V + W + +G + + T++E L G+ P R+ S +E ++A Sbjct: 96 AYDANAVVGIFHAAEWDGHVLVGLDRDFLYTMVEVLFGSDGSEPPVEDERTFSAIELRIA 155 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + Q+ L +++ LE ++ + + N Sbjct: 156 QMVFEQVGKALESSFGLVSQTAFRLERTET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 213 Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 LIIPQ L +S + A + + V + + + TL Sbjct: 214 EMFLIIPQTVLNPLRPALAKVLTGESAARDPRWAQQIAAEVQKTTVRLRAVLEERHLTLG 273 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ LK+GQV+ T L N + ++ C G+ Y +R+ D IN +++ Sbjct: 274 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGAYVLRVEDAINPEKEGGHGL 333 Query: 315 L 315 L Sbjct: 334 L 334 >gi|157364676|ref|YP_001471443.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO] gi|157315280|gb|ABV34379.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO] Length = 330 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 101/295 (34%), Gaps = 8/295 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L K ++ + + + + ++ +I+ S + I S Sbjct: 37 LYDFRRPSKFSKEHIRVFDMIHENFARSISTYLSGRVRTFTNINLASIDQISYEEFIRSL 96 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + S + + + + + T+L+ +LG + R+ S +E + ++ Sbjct: 97 PAPSFITVFSAPEFVGSAILEMNLEIFYTILDLILGGPGIPNVK---RTPSDIELSIMRK 153 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 + I L+Q S + P +E + + NE + +++ +TI Sbjct: 154 EVMNILTNLSQAWSEVYQFVPTIE--SVENNPQFVQIAPPNEMILLVSLYVTIAKTEGFL 211 Query: 198 VLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 + P K E SE +++ + + + I + ++K Sbjct: 212 NICWPSSLTEPFMDKLSSRTWFTAKREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVK 271 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +++ L++G VI + ++ K + G + +++T + + + Sbjct: 272 EILDLEVGDVIRLQTHKDDDVMVEVQSKPKFMARPGVFKGHRAVKVTRILKPEVE 326 >gi|15645645|ref|NP_207821.1| flagellar motor switch protein FliM [Helicobacter pylori 26695] gi|108562841|ref|YP_627157.1| flagellar motor switch protein FliM [Helicobacter pylori HPAG1] gi|2314176|gb|AAD08075.1| flagellar motor switch protein (fliM) [Helicobacter pylori 26695] gi|107836614|gb|ABF84483.1| flagellar motor switch protein [Helicobacter pylori HPAG1] gi|317009061|gb|ADU79641.1| flagellar motor switch protein FliM [Helicobacter pylori India7] Length = 354 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + I Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|163850084|ref|YP_001638127.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|163661689|gb|ABY29056.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] Length = 344 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 3/301 (0%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + R+ G + S + K S + +SG+F + Sbjct: 45 DIRTRIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLD 104 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ N V W + +G + + T++E L G+ P R+ S +E ++A Sbjct: 105 AYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIA 164 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + Q+ L +++ LE ++ + + N Sbjct: 165 QMVFEQVGKALESSFGLVSQTAFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 222 Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 LIIPQ L +S + + A + + V + + + TL Sbjct: 223 EMFLIIPQTVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLG 282 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN +++ Sbjct: 283 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINPEKEGGHGL 342 Query: 315 L 315 L Sbjct: 343 L 343 >gi|308182586|ref|YP_003926713.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4] gi|308064771|gb|ADO06663.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4] Length = 354 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + I Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95] gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95] Length = 359 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 104/277 (37%), Gaps = 5/277 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + + + + L + VD+ Y S FS S S Sbjct: 51 SREQLRTLQLIHESFARELSTYLSGRSRTFVDVKYASIDQITFSEFQKSLNSPTFIVIFS 110 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 ++S + + +L +++ LLG T+ ++ R + +E + ++ A + +L+ Sbjct: 111 SEAFSGSAILQMGLDLGYVIIDRLLGGPGNTLEEI--RPPTEIEMNILRKESAVMLRMLS 168 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S +E NLE+ + NE I +++TI+NV L P +L Sbjct: 169 KSWSNIEEFDANLENLET--NPQFVQVAPPNEMTILITLSVTIKNVQGFVNLCFPSSSLE 226 Query: 208 KTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + S +E+ + + +N+ + + L D + L++G VI Sbjct: 227 PLNDKLTTRMWTTSYRHTEEFKENLRQSLLLSKLNLSAILGKTEIYLNDFLNLEVGDVIR 286 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L + I+ +G+ Y+++I ++ Sbjct: 287 LDSFYDEPIDLEIEERPIFKVNVGKSKGFYSVKIVEK 323 >gi|322421724|ref|YP_004200947.1| flagellar motor switch protein FliM [Geobacter sp. M18] gi|320128111|gb|ADW15671.1| flagellar motor switch protein FliM [Geobacter sp. M18] Length = 325 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 95/284 (33%), Gaps = 3/284 (1%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 + + + ++ ++ VDI KF + + Sbjct: 44 EAHRAIPNLDIVYDGFIRYNRVTMSNRLGRMVDIKKEEAVPYKFGDFLSVLPSPVCMAIY 103 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + I + LV T+++++LG S Q NR +++E +L ++ + A L Sbjct: 104 KMDPLKGAALIAFDSTLVFTIVDSILGGSGVPSGQGMNRLFTSIELRLVEKIVKDALADL 163 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + + +S NL + + V T++M + IE S +L IP T+ Sbjct: 164 EKAWAPLCPASMNLLRLEM--NPRLVNIVPAEYQVVTMSMKIQIEETVGSMILAIPFLTI 221 Query: 207 LKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 Q + + ++I + +L D++ L G VI Sbjct: 222 EPIRDKLKRGVQMDMMVMDPLWSYRLSEELMGAPMDISVEMGGATVSLADLLGLTPGDVI 281 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K + G + + G G N ++IT + + Sbjct: 282 MLDSSGKDELSVKVGGTKKFMGIAGVSGGNKAVQITRALTGGED 325 >gi|213646780|ref|ZP_03376833.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 293 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 32/271 (11%), Positives = 83/271 (30%), Gaps = 8/271 (2%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + P P R+ + + + + + + DI+ Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ D R+ + Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + L ++ LK G V+P ++ Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKPDR 291 >gi|315453793|ref|YP_004074063.1| flagellar motor switch protein [Helicobacter felis ATCC 49179] gi|315132845|emb|CBY83473.1| flagellar motor switch protein [Helicobacter felis ATCC 49179] Length = 353 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 100/291 (34%), Gaps = 6/291 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + S+ + L M V+I S + + S F+ S Sbjct: 49 SKEQLRSFRSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + ++V +++ LLG + Q R S +E L + Q+ +L Sbjct: 109 MKPVGGTGVLEVNPSIVFPMIDRLLGGKGSSYDQT--REFSDIELNLLDTILKQVMQILK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E P ++ + NE V + M + I + L P ++ Sbjct: 167 DIWNPVTEFFPTIDAKESSANV--VQIVAQNEIVIMVVMEIVIGHSRGMMNLCYPVISIE 224 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + +V++ + + TLK+V+ L +G I Sbjct: 225 GILSKMGNRDVMLTETSSKKSRNKELQALVGGASVDVSAFLGSVRLTLKEVLDLVVGDTI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +++ + KE Y +G G TI+I + I+ ++ +K L Sbjct: 285 RLNKVANDTVVVNIDKKERYLATVGYQGYRKTIKIKEVIHTEKDRVKEVLE 335 >gi|297379637|gb|ADI34524.1| flagellar motor switch protein FliM [Helicobacter pylori v225d] Length = 354 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIVPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|317177228|dbj|BAJ55017.1| flagellar motor switch protein FliM [Helicobacter pylori F16] Length = 354 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 103/312 (33%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P H + L K + S+ + L M V+I S Sbjct: 29 KDIIPQHSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q +R Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|317010690|gb|ADU84437.1| flagellar motor switch protein FliM [Helicobacter pylori SouthAfrica7] Length = 354 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|197120188|ref|YP_002140615.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem] gi|197089548|gb|ACH40819.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem] Length = 325 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 93/284 (32%), Gaps = 4/284 (1%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 + + + ++ ++ VDI KF + + Sbjct: 44 EAHRAIPNLDIVYDGFIRYNRVTMSNRLGRMVDIKKEEAVPYKFGDFLSVLPNPVCMAIY 103 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + I LV T+++++LG S Q NR +++E +L ++ + A L Sbjct: 104 KMDPLKGAALIAFDATLVFTIVDSILGGSGVQP-QGMNRLFTSIELRLVEKIVKDALADL 162 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + + +S NL + V T++M + IE S +L IP T+ Sbjct: 163 EKAWAPLCPASMNLLRLEM--NPRLVNIVPPEYQVVTMSMKIQIEETVGSMILAIPFLTI 220 Query: 207 LKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 Q + + +++ + +L D++ L G I Sbjct: 221 EPIRDKLKRGVQMDMMAVDPFWSYRLSEELMGAPMDLSVEMGGATISLSDLLHLTPGDTI 280 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K + G + + G G N ++IT +N + Sbjct: 281 MLEASGKDELTVKVGGTKKFMGIAGVSGGNKAVQITRALNAGGE 324 >gi|317180688|dbj|BAJ58474.1| flagellar motor switch protein FliM [Helicobacter pylori F32] Length = 354 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q +R Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKEHTKEILEM 336 >gi|159184367|ref|NP_353588.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58] gi|159139681|gb|AAK86373.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58] Length = 319 Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + Sbjct: 14 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 73 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E Sbjct: 74 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 133 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I+ VL ++ ++ ++ + ++ + TI M + I Sbjct: 134 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 193 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T Sbjct: 194 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 253 Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313 Query: 311 LKNFL 315 L++ + Sbjct: 314 LRHLM 318 >gi|240137217|ref|YP_002961686.1| Flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|240007183|gb|ACS38409.1| Flagellar motor switch protein FliM [Methylobacterium extorquens AM1] Length = 344 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 3/301 (0%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + R+ G + S + K S + +SG+F + Sbjct: 45 DIRTRIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLD 104 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ N V W + +G + + T++E L G+ P R+ S +E ++A Sbjct: 105 AYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIA 164 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + Q+ L +++ LE ++ + + N Sbjct: 165 QMVFEQVGKALESSFGLVSQTAFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 222 Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 LIIPQ L +S + + A + + V + + + TL Sbjct: 223 EMFLIIPQTVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLG 282 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN +++ Sbjct: 283 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINPEKEGGHGL 342 Query: 315 L 315 L Sbjct: 343 L 343 >gi|218528687|ref|YP_002419503.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|254559229|ref|YP_003066324.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] gi|218520990|gb|ACK81575.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|254266507|emb|CAX22271.1| Flagellar motor switch protein FliM [Methylobacterium extorquens DM4] Length = 340 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 3/301 (0%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + R+ G + S + K S + +SG+F + Sbjct: 41 DIRTRIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLD 100 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ N V W + +G + + T++E L G+ P R+ S +E ++A Sbjct: 101 AYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIA 160 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + Q+ L +++ LE ++ + + N Sbjct: 161 QMVFEQVGKALESSFGLVSQTAFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 218 Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 LIIPQ L +S + + A + + V + + + TL Sbjct: 219 EMFLIIPQTVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLG 278 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN +++ Sbjct: 279 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINPEKEGGHGL 338 Query: 315 L 315 L Sbjct: 339 L 339 >gi|222053613|ref|YP_002535975.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32] gi|221562902|gb|ACM18874.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32] Length = 328 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 89/267 (33%), Gaps = 3/267 (1%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 + + ++ ++ V+I + KF + S + + I Sbjct: 56 IYDGFIRYNRVNMSNRLGKMVEIKKVGARPYKFDDFLQSLPSPVCMAIYKIEPLKGAALI 115 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + V T+++++LG NR + +E +L ++ I + A + + + Sbjct: 116 AVDSTFVYTVVDSILGGVGVPNIPANNRLFTPIELRLVEKIIRDVLADMEKAWAPLLAVK 175 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS- 216 NL + V T+++ + IE S +L +P T+ S Sbjct: 176 MNL--LRMEMNPRLVNIVPPEYQVVTMSLKIQIEETVGSMILAVPYMTVDPIRDKLKSGL 233 Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q + + + + I + TL +++ L G + + + Sbjct: 234 QVDMMAVDPQWSIRLSEELKEAPLEISVEMGNSSITLAELLNLSPGDTVMLEESGRNELL 293 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDR 303 + G + + G G N ++I+ Sbjct: 294 VKVGGVKKFMGLPGVRGGNKAVQISRI 320 >gi|188527225|ref|YP_001909912.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470] gi|188143465|gb|ACD47882.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470] gi|308061768|gb|ADO03656.1| flagellar motor switch protein FliM [Helicobacter pylori Cuz20] gi|308063277|gb|ADO05164.1| flagellar motor switch protein FliM [Helicobacter pylori Sat464] Length = 354 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|20141429|sp|Q44457|FLIM_AGRT5 RecName: Full=Flagellar motor switch protein FliM Length = 321 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + Sbjct: 16 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E Sbjct: 76 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I+ VL ++ ++ ++ + ++ + TI M + I Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255 Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315 Query: 311 LKNFL 315 L++ + Sbjct: 316 LRHLM 320 >gi|1480838|gb|AAC45322.1| FliM [Agrobacterium tumefaciens] gi|2459705|gb|AAB71781.1| FliM [Agrobacterium tumefaciens] Length = 321 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + Sbjct: 16 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E Sbjct: 76 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I+ VL ++ ++ ++ + ++ + TI M + I Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPCGFVATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255 Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315 Query: 311 LKNFL 315 L++ + Sbjct: 316 LRHLM 320 >gi|261837849|gb|ACX97615.1| flagellar motor switch protein [Helicobacter pylori 51] gi|261839264|gb|ACX99029.1| flagellar motor switch protein FliM [Helicobacter pylori 52] gi|317181758|dbj|BAJ59542.1| flagellar motor switch protein FliM [Helicobacter pylori F57] Length = 354 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q +R Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|332673263|gb|AEE70080.1| flagellar motor switch protein FliM [Helicobacter pylori 83] Length = 354 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRNVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q +R Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4] gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4] Length = 327 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 33/284 (11%), Positives = 91/284 (32%), Gaps = 7/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + L + + L + ++ ++ + F I S + + Sbjct: 47 SKEQLRTLQLLHENWARILSGFLSGYLRTNISVTVSGVDQLTFDDFIRSLPAPTLLIIFT 106 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L + + + + +++ L G E ++ R + +E + ++ ++ L+ Sbjct: 107 LEPLPGAAVMETNPSFLFPVIDLLFGGPGEMPEKI--REFTEIEVSVGRKLAEKLLENLS 164 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETL 206 + +P +E + +E V I + ++ L P L Sbjct: 165 FAWRDVFKVTPAVEGVET--NPRLQQIISPSEVVAVITLTTSVGTESRGLINLCFPHMML 222 Query: 207 LKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 SE ++ V + + + ++++ + L++G V Sbjct: 223 EPVLSQLSRFYHMRPSEPPDASATRNLRYWLEKVPVEVSVVVGETRLSVQEFLDLEVGDV 282 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + R + + Y + G +G++ ++IT + Sbjct: 283 LVLDRRFGEDLDVYVGKIKRYRAQPGLLGRHLAVQITGLAEGGE 326 >gi|217033289|ref|ZP_03438720.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10] gi|216944230|gb|EEC23655.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10] gi|317179190|dbj|BAJ56978.1| flagellar motor switch protein FliM [Helicobacter pylori F30] Length = 354 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q +R Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKERTKEILEM 336 >gi|57241942|ref|ZP_00369882.1| flagellar motor switch protein FliM [Campylobacter upsaliensis RM3195] gi|315638332|ref|ZP_07893512.1| flagellar motor switch protein FliM [Campylobacter upsaliensis JV21] gi|57017134|gb|EAL53915.1| flagellar motor switch protein FliM [Campylobacter upsaliensis RM3195] gi|315481599|gb|EFU72223.1| flagellar motor switch protein FliM [Campylobacter upsaliensis JV21] Length = 360 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + L M V+ S + + S F+ S Sbjct: 50 SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + ++ +++ LLG ++ +R L+ +E L + I L Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + ST E P++E + NE + + M + I N + + P L Sbjct: 168 ESWSTVTEIYPSIEAKESSPNV--VQIVSQNEIIIMVVMEIIIGNSSGMVNICYPVVHLE 225 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + V + + + + + LK G ++ Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVNEFLELKQGDIL 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 A++S + K+++ ++G +I+I + I D+ +K L K Sbjct: 286 RLDREADDKAVVSIDKKDVFLAQIGLHRFRKSIKIIELIRTDKDEIKEILEK 337 >gi|315586408|gb|ADU40789.1| flagellar motor switch protein FliM [Helicobacter pylori 35A] Length = 354 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 103/312 (33%), Gaps = 6/312 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q +R Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + I + + P ++ S N + ++V++ Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGVVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLHK 317 +++ K L Sbjct: 325 SEKEHTKEILEM 336 >gi|323341356|ref|ZP_08081600.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC 25644] gi|323091233|gb|EFZ33861.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC 25644] Length = 336 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 38/309 (12%), Positives = 94/309 (30%), Gaps = 15/309 (4%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 RL K + + K + ++ +V + + + Sbjct: 35 PKVREYDFRRPTRL------SKEYINTLHMIFEDFSKMTGNVLSTQLRTNVSVDLAAIEQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR-- 125 + +HS + + + + L ++E L G + Sbjct: 89 ISYDEFMHSIPRVTLLGMFHSEPLKGSQLLEINPQLCSLMVELLCGGLDVRTQHPDEKIP 148 Query: 126 ---SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 S S ++ L + +I V E + + + + NE V Sbjct: 149 SIESFSDIDLALMRELFKEIVNVYKTSWKDIVELNSKFDTIDT--NPQLSQAMSPNEPVV 206 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNV 240 + + + +++ L IP + + S + +ED R + + Sbjct: 207 LVTFTVKVFGISTFINLCIPYVFFEGILDKLSIRNWFDSSSDDNEDDSLEIKRGLNNVEM 266 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I+T++ + + D + L+ G VI + + G+ + + G+ I + Sbjct: 267 VIETKLGDAQMSFADFLNLEAGDVIRLDKKTTSPLETYIEGEPFFYVKPGQKDGQLAIEL 326 Query: 301 TDRINFDQK 309 D++ ++ Sbjct: 327 LDKMEGEED 335 >gi|253702497|ref|YP_003023686.1| flagellar motor switch protein FliM [Geobacter sp. M21] gi|251777347|gb|ACT19928.1| flagellar motor switch protein FliM [Geobacter sp. M21] Length = 325 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 4/284 (1%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 + + + ++ ++ VDI KF + + Sbjct: 44 EAHRAIPNLDIVYDGFIRYNRVTMSNRLGRMVDIKKEEAVPYKFGDFLSVLPNPVCMAIY 103 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + I LV T+++++LG S Q NR +++E +L ++ + A L Sbjct: 104 KMDPLKGAALIAFDATLVFTIVDSILGGSGVQP-QGMNRLFTSIELRLVEKIVKDALADL 162 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + + ++ NL + V T++M + IE S +L IP T+ Sbjct: 163 ERAWAPLCPATMNLLRLEM--NPRLVNIVPPEYQVVTMSMKIQIEETVGSMILAIPFLTI 220 Query: 207 LKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 Q + + +++ + +L D++ L G I Sbjct: 221 EPIRDKLKRGVQMDMMAVDPLWSYRLSEELMGAPMDLSVEMGGATISLSDLLHLTPGDTI 280 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K + G + + G G N ++IT + + Sbjct: 281 MLEASGKDELTVKVGGTKKFMGIAGVSGGNKAVQITRALTAGGE 324 >gi|32474773|ref|NP_867767.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1] gi|32445313|emb|CAD75314.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1] Length = 428 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 33/282 (11%), Positives = 80/282 (28%), Gaps = 6/282 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K + SL + + +++ S +S + S F+ Sbjct: 89 KDQMRAMHSLHESIARNFGASISGLLRTMIEVKLLSVDQLTYSEFVFSLDNPSCFNVIKP 148 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 ++ + + L +++ +LG + R L+ +E +L R + + Sbjct: 149 LPLEGHWVLDIAPGLAYAIIDRMLGGDPV-PGETIRRPLTEIETRLMCRVVELFLEQIVP 207 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + P++ + NE + + + L IP ++ K Sbjct: 208 AWENVIQLEPSIHT--TESNPQLAQIVPPNEVAILVGFEVLLGKNRGMMNLCIPFNSIEK 265 Query: 209 TTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 N + A V++ + K D++ L +G +I Sbjct: 266 YNAKLSRNGWVGYGKTNPTPQSRRKIADSIDAAPVDVVVTLARSKIRTSDLLDLNVGDII 325 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + LS ++ G +++ + Sbjct: 326 TTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQSTVEPK 367 >gi|85058024|ref|YP_453726.1| flagellar motor switch protein FliM [Sodalis glossinidius str. 'morsitans'] gi|84778544|dbj|BAE73321.1| flagellar motor switch protein FliM [Sodalis glossinidius str. 'morsitans'] Length = 340 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 83/304 (27%), Gaps = 13/304 (4%) Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70 SP R G K + + M DIS + + Sbjct: 43 SPFDAAQRRRQGG------ERLKGLEMINQDFAGRFRSALFILMQRRTDISAEAILIQPY 96 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 + + L N + L+ T L+ L G S R+ + Sbjct: 97 REFAAQLRPPASLNLIDLKPLRGNTLFAFTPGLIFTTLDTLFGGSGRLPDAQE-RAFTPA 155 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 E+++ R + + P + + T E V + I Sbjct: 156 EQRVIDRLLKLMLQAYGDAWLGLHPLEPEFI---TAETSCRFTGFSDGEMVVISPFRVAI 212 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE-DLIDPFARKTYQLNVNIDTRINLK 249 + F ++ Q L I + Q + AR+ + + R Sbjct: 213 GAMQGEFAIVFSQAALEPLYEILSKPLPEHIRQDQGHWRQNLARQLQGTELELVARFADL 272 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L V+ L+ G ++P +G ++ G + Y +R+ IN Sbjct: 273 PLCLSRVMELRRGDILPIPRP--DRLTACVDGVPVFLGNYGSLNGRYALRVEHVINQGID 330 Query: 310 SLKN 313 L N Sbjct: 331 QLNN 334 >gi|237751752|ref|ZP_04582232.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879] gi|229373118|gb|EEO23509.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879] Length = 356 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 100/292 (34%), Gaps = 6/292 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + S+ + L M V+I S + + S F+ S Sbjct: 49 SREQLRSFRSIHDKMARNLSNQISAIMRSIVEIQLHSVDQMTYGEFLMSLPTPTSFNVFS 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + ++ +++ LLG + R S +E L + QI L Sbjct: 109 MKPMDGAGVLEINPSIAFPMIDRLLGGRGDQYD--DTREFSNIELNLLDTILRQIMQNLK 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + E P+++ + NE V + M + I + + + P +L Sbjct: 167 ESWAAVAEIFPSIDAKESSPNV--VQIVAQNEVVVMVVMEIVIGHSSGMMNICYPVISLE 224 Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 S + + +V+I + + + K+++ LK+G VI Sbjct: 225 TILSRLASRDLMMSETSGKKSRNRELQALIGGADVHIAAMLGGTQLSFKEILELKVGDVI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +S +G++ Y ++G TI+I D I ++ +K + Sbjct: 285 MLDRVADDTVHVSIDGRDKYRAKIGLQRFRKTIQILDEIKTEKDQVKEMIEM 336 >gi|330902572|gb|EGH33587.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. japonica str. M301072PT] Length = 244 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 80/242 (33%), Gaps = 4/242 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 + + ++ + D++ Q KF +HS + A + Sbjct: 1 MPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPL 60 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 LV L++N G ++ R + E ++ + + Q L + Sbjct: 61 RGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQ 119 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 E + E +E V ++ ++ + +P + Sbjct: 120 AIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIRE 177 Query: 212 ISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + Q+ ++Q E ++ +NV + T I ++ L+D++ ++ G VIP Sbjct: 178 MLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELS 237 Query: 271 EK 272 + Sbjct: 238 DS 239 >gi|327540553|gb|EGF27130.1| flagellar motor switch protein fliM [Rhodopirellula baltica WH47] Length = 428 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 33/282 (11%), Positives = 80/282 (28%), Gaps = 6/282 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K + SL + + +++ S +S + S F+ Sbjct: 89 KDQMRAMHSLHESIARNFGASISGLLRTMIEVKLLSVDQLTYSEFVFSLDNPSCFNVIKP 148 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 ++ + + L +++ +LG + R L+ +E +L R + + Sbjct: 149 LPLEGHWVLDIAPGLAYAIIDRMLGGDPV-PGETIRRPLTEIETRLMCRVVELFLEQIVP 207 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + P++ + NE + + + L IP ++ K Sbjct: 208 AWENVIQLEPSIHT--TESNPQLAQIVPPNEVAILVGFEVLLGKNRGMMNLCIPFNSIEK 265 Query: 209 TTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 N + A V++ + K D++ L +G +I Sbjct: 266 YNAKLSRNGWVGYGKTNPTPQSRRKIADSIDAAPVDVVVTLARSKIRTSDLLDLNVGDII 325 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + LS ++ G +++ + Sbjct: 326 TTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQSTVEPK 367 >gi|313681608|ref|YP_004059346.1| flagellar motor switch protein flim [Sulfuricurvum kujiense DSM 16994] gi|313154468|gb|ADR33146.1| flagellar motor switch protein FliM [Sulfuricurvum kujiense DSM 16994] Length = 364 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 106/314 (33%), Gaps = 6/314 (1%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ ++ P I L K + + + + M V+I Sbjct: 26 ETTEESLYPQRQITLYDFKRPNRVSKEQLRAFRGIHDKMARSIASQISAIMRSIVEIQLH 85 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S + + S F+ S+ N + + ++ +L+ +LG E Sbjct: 86 SVDQMTYGEFLMSLPNPTSFNVFSMKPLEGNGVLEINPSIAFPMLDRILGGKGEPFE--A 143 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 NR S +E L + + + L + + P +E + NE V Sbjct: 144 NREFSDIELSLFETILRVMMGTLREAWGPVTDLYPQVESKESSPNV--VQIVAQNEIVVM 201 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVN 241 + M + I + + + P L S + + +VN Sbjct: 202 VVMEIIIGHSSGMMNICYPVIALEPVLPKLASRDLMLNETSSKKSRNQELQVLLGGAHVN 261 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 ++ + + +L +++ L G +I +S +GK+ + ++G +I+IT Sbjct: 262 VEVNLGEAELSLHELLELGEGDIIRLNIPADDVVNVSVDGKDRFVGQMGLRRFRKSIQIT 321 Query: 302 DRINFDQKSLKNFL 315 I+ ++ ++K L Sbjct: 322 SLIDTEKDAVKRAL 335 >gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] Length = 323 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 104/289 (35%), Gaps = 6/289 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 + + + Y + + + + + +++ + I+S Sbjct: 39 DFKRPSKFSRDHLRTLELIHETYGRLVATSLSSLVRGSMRLDFSAIDQVPYEEFINSLIP 98 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + S + + + + N+ + L++ LLG S P R+ + +E L + + Sbjct: 99 PAMIVIISWENTGLSMVLEMNLNITLALVDRLLGGSGLPPPSP--RAPTDIENALIAKLV 156 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + L + T S + +NE V I M++ I +++ L Sbjct: 157 DRHLVALEEAWRTVYPVSLTFVGTET--NPEFAQIVPANEMVVLITMDIGIGDLSGIMSL 214 Query: 200 IIPQETLLKTTLISLSSQN--KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 IP L + + K + +++ + + + VN+ + L+D++ Sbjct: 215 AIPYSLLEPIVNHLSAQRFFVKKKAENDIEREYVYQHVLNVMVNLQVCLGHMHIPLRDLI 274 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L++G + + + K+ + GRVGKN I+IT+ + Sbjct: 275 NLRVGDTLLLDTKVDKPLDVKIEKKQKFLGVPGRVGKNLAIKITEVLRE 323 >gi|330880582|gb|EGH14731.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. race 4] Length = 242 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 84/243 (34%), Gaps = 6/243 (2%) Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF +HS + A + LV L++N G ++ Sbjct: 2 GGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKI 60 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E ++ + + Q L + E + E +E Sbjct: 61 EGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAGV 118 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVN 241 ++ ++ + +P + + + Q+ ++Q E I+ +NV Sbjct: 119 ISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWINALKEDVLDVNVP 178 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T I ++ L+D++ ++ G VIP ++ ANG + +LG +++ Sbjct: 179 LTTTIAQRQLPLRDILHMRPGDVIPVEL--SESLVMRANGVPSFKVKLGSHKGKMALQVI 236 Query: 302 DRI 304 + I Sbjct: 237 EPI 239 >gi|78485773|ref|YP_391698.1| flagellar motor switch protein FliM [Thiomicrospira crunogena XCL-2] gi|78364059|gb|ABB42024.1| flagellar motor switch protein FliM [Thiomicrospira crunogena XCL-2] Length = 339 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 32/323 (9%), Positives = 103/323 (31%), Gaps = 11/323 (3%) Query: 1 MRGQSIH---KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57 M G + N + + T + + + + + + F E + Sbjct: 17 MGGGDVDTEGDNPAEGTSAKVYDFTNQERIVRGRLPALDIINERFARGFQRHFNEMIMSS 76 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+++ + K + + + ++ + + L+ T ++ G + Sbjct: 77 VEVTAGEVKIIKMIDYLRNLFVPTSLNIYRINPLNGVSLFTLDSKLIFTAVDMYFGGTGL 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 ++ R + VE + + + S L + + + ++ + K + + Sbjct: 137 LPFKIEGREYTPVEMSMVRSILDMSSDNLRKAWAPVMDIE--IDYMHSEMNPKFASIVDA 194 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTY 236 + + +N+ E V +++P L + +T Sbjct: 195 TDMIVVSPINVRFEGVEGRVDIVMPYAMLEPVRDKLEEGMSNLQGESDNRWSRTLKEETK 254 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + + + ++ D++ ++ G +IP + A G + ++G Sbjct: 255 NIEIELAVNLLELQMSMDDLMKMEKGDIIPIEMP--ELVTVKAEGIGVLKGKVGESRDRK 312 Query: 297 TIRITDRINF---DQKSLKNFLH 316 ++I + ++ ++N Sbjct: 313 AVKIEQILRHPAYQERMVENVKE 335 >gi|297569682|ref|YP_003691026.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus AHT2] gi|296925597|gb|ADH86407.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus AHT2] Length = 330 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 33/286 (11%), Positives = 88/286 (30%), Gaps = 3/286 (1%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 T + +T ++ + + + + +D++ + +F + + Sbjct: 41 DFTRQQRIVQTRMPAMDAISDAFMRSMRNSLASALRRILDVTAVPMELERFGAFVRTLPV 100 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 ++ + + I LV L+E+ LG S ++ R + +E++L +R + Sbjct: 101 PSSLQIFKMAPFRGHALIVLEPRLVFNLVESFLGGSGSRNVRIEGRDFTAIEQRLIRRVV 160 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + + + + Q + + V + ++ S Sbjct: 161 NLLLTDMEKAWYSLQPLKVQYVR--SEINPQFAKICQPEDVVIINRYEVDMDRAVGSITT 218 Query: 200 IIPQETLLKTTL-ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 IP L + + Q + + + V + ++++ Sbjct: 219 CIPMSNLESVRNRLMTTFQREQSEEDIAIQRTITENIKNAEVEFKVELGRTTVPAREIIN 278 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L++G + R + K Y G KN + I ++ Sbjct: 279 LQVGDTLTLDRRTDEQLPVFVASKRKYMATPGVHRKNNAVLIKKKV 324 >gi|114765265|ref|ZP_01444397.1| Flagellar motor switch protein fliM [Pelagibaca bermudensis HTCC2601] gi|114542400|gb|EAU45428.1| Flagellar motor switch protein fliM [Roseovarius sp. HTCC2601] Length = 313 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 37/313 (11%), Positives = 94/313 (30%), Gaps = 4/313 (1%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + +P + + + + + + L + K + ++S Sbjct: 2 STARTLTPDTRAVEELIVERAKLSYARLPMLEVVFDRFSLSLAQTLKSYLGAMAEVSLGG 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + S + W + L+ ++E G + Sbjct: 62 IDYLSCQDALKDQPDPSLISVTTAEEWGGTIAAIMTPELLFGIIEITFGGRTVATGEKKT 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R+ +++EK++ + + L+ + + ++ K Sbjct: 122 RNFTSIEKRIGQNFTETVLTELSNAFAKVTPVNFDISHLET--NPKALLLAPPTSACVRA 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNID 243 + + IE V ++P K + I NV + Sbjct: 180 RLTIDIEGRIGEMVFVLPNTAFEKVSHILSQQFTGGQLGGDSGWRLKMTDMLGSTNVPMS 239 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG-RVGKNYTIRITD 302 + ++DV+ GQV+ + L GKEI E+G R +++++ Sbjct: 240 AVMGQAVLPMRDVLAWAPGQVLDLGIQVDDPVTLCCAGKEIARAEVGHRKNGRIALKLSE 299 Query: 303 RINFDQKSLKNFL 315 ++ ++ S + Sbjct: 300 KLYEEKDSPDDLR 312 >gi|170748130|ref|YP_001754390.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] gi|170654652|gb|ACB23707.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] Length = 309 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 110/303 (36%), Gaps = 3/303 (0%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + RL G + + F + V S ++ +S +F I+ Sbjct: 9 DIRDRLLDAAGLSLERLPMLHVILDRVATFCADQLRHFAASPVYFSLSNVESQRFGDILE 68 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ N + W S+ +G + + T++E LLG+ P RS S +E ++A Sbjct: 69 PYESNAIAGIFQAPEWDSHILVGFDRDFIFTMVEVLLGSDGSEPPLDEERSFSNIEMRIA 128 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 +R Q+ + + ++ LE + N + N Sbjct: 129 QRLFEQVGRAVQSAFALVADTPFKLER--TELRMDFAVIGRRNNQAVAAKFLLQALNRGG 186 Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 ++IPQ L ++ + A + + V + + K L Sbjct: 187 EMFIVIPQSVLNPMRQSLARILVGETSARDSRWTRQIAGEVQKTPVTLKAILEEKPLALG 246 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ L +GQV+ ++ L N ++++ C++G+ +R+ I+ DQ+ + + Sbjct: 247 EIADLAVGQVLELRATPRSRVKLVGNDRDLFWCDVGQEDGAIVLRVDHFIDQDQEFIDDV 306 Query: 315 LHK 317 L + Sbjct: 307 LAR 309 >gi|300680950|sp|P0CG26|FLIM_CAUCR RecName: Full=Flagellar motor switch protein FliM gi|144253|gb|AAA62449.1| FliM [Caulobacter crescentus CB15] Length = 373 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 32/303 (10%), Positives = 101/303 (33%), Gaps = 4/303 (1%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + + + + + + +V++S + S +F Sbjct: 72 DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 131 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEK 132 ++S + + + + +NL+ ++++ LLG ++ R +T+E+ Sbjct: 132 LNSIPLPGILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 191 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L +R I + L S +L+ + + + +E+ Sbjct: 192 VLVQRMIDVVLHDLKSAFEPLHPVSFSLDRLET--NPPFAAIARPANAAILVKLRIDMED 249 Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L++P TL ++ + + A + + + + ++ ++ Sbjct: 250 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQV 309 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 L V+ +++G + + + + +GR + +R ++ +K++ Sbjct: 310 PLSRVLNMQVGDTLMLNATSRQPGGAARRRIPLTRGRMGRRNHSIAVRAEAPVDRRKKAV 369 Query: 312 KNF 314 + Sbjct: 370 QKL 372 >gi|94264049|ref|ZP_01287849.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [delta proteobacterium MLMS-1] gi|93455560|gb|EAT05747.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [delta proteobacterium MLMS-1] Length = 330 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 97/309 (31%), Gaps = 7/309 (2%) Query: 1 MRGQSIHKNTSPLHPILLA----RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL 56 + G I + + L T + + ++ + + + + Sbjct: 18 ISGGDIDEPEEAVDAESLGYTPYDFTRQQRIVQVKMPAMDAISDTFMRSVRTSLSAALRR 77 Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +DI+ + +F + + ++ + + I LV TL+E+ LG S Sbjct: 78 ILDITAAPMEMERFGAFVRTLPVPSSLQVFKMAPFRGHALIVLEPKLVFTLVESFLGGSG 137 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 ++ R + +E++L +R + + L + + Q + Sbjct: 138 ARNVRVEGRDFTAIEQRLIRRVVNLLLTDLEKAWYSLQPLKVQYVR--SEINPQFAKICQ 195 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKT 235 + V ++ ++ A S IP L + + Q + + + Sbjct: 196 PEDVVVINRYDVDMDRAAGSITTCIPLANLESVKSKLMTTFQREQSEEDIAIQRTIVDNI 255 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 V+I + K D++ L +G I R + + G Y G N Sbjct: 256 KNAEVDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQLPVYVAGMRKYMATPGVHRNN 315 Query: 296 YTIRITDRI 304 + I ++ Sbjct: 316 NAVLIKRKV 324 >gi|162147486|ref|YP_001601947.1| flagellar motor switch protein FliM [Gluconacetobacter diazotrophicus PAl 5] gi|209545593|ref|YP_002277822.1| flagellar motor switch protein FliM [Gluconacetobacter diazotrophicus PAl 5] gi|161786063|emb|CAP55645.1| putative flagellar motor switch protein fliM [Gluconacetobacter diazotrophicus PAl 5] gi|209533270|gb|ACI53207.1| flagellar motor switch protein FliM [Gluconacetobacter diazotrophicus PAl 5] Length = 395 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 101/291 (34%), Gaps = 6/291 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R+ + + + L + + +V+I+ +S F +++ Sbjct: 81 LERVIKAGFVAYERLPMLEIVFDRLVRMLSSTLRSFTNDNVEITIDGMRSMSFGDYMNAV 140 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAK 136 + +F+ W + I + L ++++ L+G + R + +E+ L + Sbjct: 141 PSSSLFAVFKAVQWENYGLIVIDSALSYSIIDILMGGPRGVGYAGVEARPHTAIERALIE 200 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + + L+ + E + ++ V +++ +E+ + S Sbjct: 201 KLVTLTLNDLSTAFNPVCTIDLTFERLEV--SARFAAIARASNAVVMTKLHIDMEDRSGS 258 Query: 197 FVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 LIIP TL + + + + ++ + K L + Sbjct: 259 LDLIIPYVTLEPVRDQLSQQFMGERFGRDSKWEGHLVSEILETDIQVSAVFEEKTILLSE 318 Query: 256 VVTLKIGQVIPFLHREKTCAILS--ANGKEIYSCELGRVGKNYTIRITDRI 304 V+ L+ G +I F H+ T + ++ LG++ ++I R+ Sbjct: 319 VLGLRPGMLISFPHQNGTPIHVRLQCGQTPLFEGRLGKLQDKAAVKIEKRL 369 >gi|254292908|ref|YP_003058931.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814] gi|254041439|gb|ACT58234.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814] Length = 376 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 101/286 (35%), Gaps = 4/286 (1%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 + + + + + L + +V++S S S +F ++S Sbjct: 77 IRSIINSAHVSYERLPMLEVVFDRLVRLLTTSLRNFTSDNVEVSLDSIASMRFGDYLNSI 136 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAK 136 + S + + +NL+ ++++ LLG ++ R +T+E+ L Sbjct: 137 PLPAILSVFRARQLDNYGLVTVDSNLIYSIVDVLLGGRRGTAAMRVEGRPYTTIERMLVT 196 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 R + I A + + E +L+ + + + + +E+ Sbjct: 197 RLVEVILADAKKAFNPLTEVDFDLDRIET--NPRFAAIAQPANAAILVRLRVDMEDRGGR 254 Query: 197 FVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P TL ++ + + A + + N+ ++ + L Sbjct: 255 CELMLPYATLEPIRKMLLQNFMGEKFGNDNIWEGHLATEIWTAPTNVRVVMDEFEQPLGR 314 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 +++L++G + + + L + ++GR+GK +R+ Sbjct: 315 MMSLEVGDTLLMTAGQNSKVSLRCGDIYLTEGQIGRIGKKVAVRVD 360 >gi|90422602|ref|YP_530972.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] gi|90104616|gb|ABD86653.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] Length = 311 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 102/300 (34%), Gaps = 3/300 (1%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 +L G G + + + + S + S + S I+ ++ Sbjct: 14 DQLLGAAGISVERMPMLHVIFDQMTNLCAEALRSMSPSQSYFSLSGVGSDRLSDIVDRYE 73 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 + + +W + IG + + T++E L GA P R S VE +A+ Sbjct: 74 GEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPPLDMPRVFSNVEMHVAQAL 133 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + L S + + LE + N N+ + + Sbjct: 134 FERFGKALQSSFSRASDVNFTLERVET--RMDYLAVGRLNNMAVCANILLQGLDRGGEMF 191 Query: 199 LIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 ++IP L +S + + + + V + + + TL +V Sbjct: 192 IVIPHAALNPIRQALSQIVTGESASTDPNWSRQLHSEIKRTEVVLKAVLEERPFTLGEVA 251 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +GQVI T L N + ++ C+LG++ Y++++ + + ++ + L + Sbjct: 252 GFHVGQVIKLNATPNTMVRLECNNQRLFWCQLGQLNGVYSLQVKESADQKREFIDGILSR 311 >gi|182679717|ref|YP_001833863.1| flagellar motor switch protein FliM [Beijerinckia indica subsp. indica ATCC 9039] gi|182635600|gb|ACB96374.1| flagellar motor switch protein FliM [Beijerinckia indica subsp. indica ATCC 9039] Length = 313 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 108/297 (36%), Gaps = 3/297 (1%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 RL G + + + ++ + +S + + I+ +++ Sbjct: 16 ERLLDTAGVSIDRMPMLHVIFDRMVAQCSESLRQYSAAPAVFTVSSIGTERIGDILDAYE 75 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 N V + + +W S +G + TL+E G P + R LS +E KLA+ Sbjct: 76 NNTVVAIIHVQAWDSRILVGFDRAFISTLIETFYGGDGSEPPNIEKRPLSNIEIKLAQTI 135 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + L ST E+ E L N F +N+ I Sbjct: 136 FDLLPKALQTSFSTISETVFKFERLETK--LDFAVIAPRNTFGFITRINLRILGRHGEMF 193 Query: 199 LIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 ++IPQ +L N + + + + V + I L D Sbjct: 194 VVIPQSSLNSIRQELGRDLANDAVVRDPRWTKQIQNEISRTEVEVRAIIEDSHFVLGDFT 253 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 LKIGQV+P K+ A L N + ++ C++G+ YT+R+ D I+ ++ ++ Sbjct: 254 ELKIGQVLPLQATTKSRAKLECNAEPLFWCQVGQEDGFYTLRVEDFIDQEKDFIEGI 310 >gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] Length = 327 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 99/280 (35%), Gaps = 6/280 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + +L + + + V+I S ++ + S N F+ S Sbjct: 52 SKEQIRAIKNLHDKFSRNFSSKLSAFLRSIVEIEVVSVDQMTYAEFVLSLSNNVSFNVVS 111 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 LS N ++ L++ LLG E+ NR + +E+ + + Q + Sbjct: 112 LSPLDGNAVFSLEPDIGFALIDRLLGGIGESSN--INRPFTDIEQSILLDVVRQAMEEMR 169 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + S + + +E V + + + +P L Sbjct: 170 SSWEPIIDISFEVVGQESSPNV--VQIVAPSEIVVLVVFEVKLGETTGIINWCLPVIVLE 227 Query: 208 KTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + +S+ +ED I+ AR ++ V ++ R+ ++D ++LK G ++ Sbjct: 228 PVLNKIGTHDILARSKKATEDRIEDIARTLKEVLVYLEFRLGTAAMKVEDFLSLKEGDLL 287 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + NG E Y +LGR G N ++I I Sbjct: 288 TLDKKVDDELPVFINGVEKYGVKLGRKGYNKAVKINRIIG 327 >gi|295696124|ref|YP_003589362.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912] gi|295411726|gb|ADG06218.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912] Length = 332 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 96/314 (30%), Gaps = 16/314 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M+ + + R K + + + Y + L F ++ + + Sbjct: 27 MKEEEEQRRIRAYDFKRAMRF------SKDQLRSLTRIYENYARMLSTYFSAQLRTWMHL 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + I S + L+ S + IG ++ +L+ LLG + Sbjct: 81 DVISVEQLPYEEFIRSMPQLSTLLVVDLAPLSGRWVIGIGPDVAFVMLDRLLGGPGLELA 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE-SSPNLEDFYDIDYLKKNTNRLSNE 179 R+ + +E + +R+ ++ VL E P L + N+ Sbjct: 141 --GARAFTEIETTVFERSWSRSLGVLGDAWKGIVEDLRPTLSFIEF--NPQFLQIAAPND 196 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-----NKSENQSEDLIDPFARK 234 V ++++M I + +P TL + S + + Sbjct: 197 TVAVVSVSMRIMETTGLMHIGMPHLTLERLLPKLSSQHMLGMGQAGRALDPAREEALRER 256 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V I + D++ L G VIP + + Y G Sbjct: 257 LRAAPVEIRAVLGRTSIDFYDLMHLAAGDVIPLHQSVNRPVEIYVGDRVKYLGRPGVDHG 316 Query: 295 NYTIRITDRINFDQ 308 ++IT+ + ++ Sbjct: 317 RLAVQITEIADDER 330 >gi|147678396|ref|YP_001212611.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI] gi|146274493|dbj|BAF60242.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI] Length = 330 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 8/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + L ++ + L + +V I S + I S V + S Sbjct: 47 SKDQLRTLQVLHGVFARLLSNFLTGYLRSNVQIEVASVDQLTYEDFIRSIPTPTVLAIFS 106 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L+ + + +++ G + E + R L+ +E + ++ +I L Sbjct: 107 LNPLKGTAIAQLDSMFLFPIIDLFFGGNGEAPKAV--RELTDIELSVVRKISMKILEHLA 164 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETL 206 P +E + +E V I + + A L +P L Sbjct: 165 LAWKDIVHVEPVIETVET--NPYLHQIFSFSEIVALITLTTQVGESARGFINLCLPFPLL 222 Query: 207 LKTTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + ++ +++ + + + + T+ D + L+ G Sbjct: 223 DPVVSQLSFQRRFGPQTSAVNDEEVKRLQYWLGFPKIELTVLAGQTQITVDDFLQLQEGD 282 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 V+ + L + + G +G ++IT + Sbjct: 283 VLILDKKVDQDLDLYIGEHLKFKVQAGALGSKLAVQITALATEGE 327 >gi|325291948|ref|YP_004277812.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] gi|45479283|gb|AAS66685.1| FliM [Agrobacterium sp. H13-3] gi|325059801|gb|ADY63492.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] Length = 319 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 165/305 (54%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI K+ S +G+LY +FLP IF + + +D+ Y +SG + Sbjct: 14 IDTSLLAKLTGGLSDRKTIAKVGSDIGHLYSEFLPDIFHSETGIAIDVEYIGSESGLMTD 73 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + NF + SL +W NF + N VI L+E +LGA+ +TI + RSLS +E Sbjct: 74 LIANIGGNFSVADCSLRNWCPNFMMAVGNGFVIALMERMLGAAADTIGEPDERSLSHIEL 133 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I VL ++ ++ + + ++ + T+ M + I Sbjct: 134 DLAAMVLGRIGGVLRSGVNAPGGFEATIDLPFTANGKSAFEEMIAGLYGVTVRMKIAIGK 193 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++ + + ++ + + +D + + + V ++ RI L+ T Sbjct: 194 VSSEFALIVPQRPLLKTSIAAPKASAQALKKQAEWVDLISEQVKRSQVTLEARIKLETLT 253 Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313 Query: 311 LKNFL 315 L++ + Sbjct: 314 LRHLM 318 >gi|254473349|ref|ZP_05086746.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] gi|211957465|gb|EEA92668.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] Length = 321 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 3/302 (0%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 L +RL G + + + ++ ++ S + + + Sbjct: 21 DLPSRLLDAAGLGVDRLPMLHVVFDRMARQYIDTLRQMAATAPYLAVQSVSNERIGDALE 80 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 +++ V + W + +G + +++E LLG E P L +RSL+ VE++LA Sbjct: 81 QYEDRAVVAVLHAQEWDARILLGFDRTFIFSMVEVLLGGDGEEEPFLEDRSLTNVEQRLA 140 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 R + + L ++S +E + ++ + M I Sbjct: 141 YRMFEEAATALETAFEAIADTSLKVERLE--NRMEFAQTGRKSNPCVLAKMTAEIIGREG 198 Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 +IIPQ L + + F ++ + V + + ++ TL+ Sbjct: 199 EIFIIIPQSVLNPLRENLTQVLSGEVAGRDTRWTKQFQQEVQRTEVKLTAILEEQRMTLE 258 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 +V ++G V+ KT L N + +++C LG+V +YT+R+ + I + + L + Sbjct: 259 EVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSYTVRVEELIEQEGELLDDI 318 Query: 315 LH 316 L Sbjct: 319 LS 320 >gi|258514031|ref|YP_003190253.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans DSM 771] gi|257777736|gb|ACV61630.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans DSM 771] Length = 334 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 88/273 (32%), Gaps = 7/273 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + L Y + L + + + S F + S + + SL + Sbjct: 56 RTLQMLHEGYGRLLSSYLTGYLRASIVVRVISVDQFTFDDFVGSVPSPTLLTVFSLPPLT 115 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + + +++ L G + + ++ R L+ +E + K+ I ++ L Sbjct: 116 GPAVLETNPQFLFPIIDLLFGGTGKMSDRV--RELTDIELSVIKKLIPKLLEQLVLAWQD 173 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTL 211 E + L+ + E + + + I + L +P L Sbjct: 174 LYEVTAELQSIET--NPRLMQVMNPGEIIALLTFSTVIGGTSRGLINLCLPYLMLEPVLS 231 Query: 212 ISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + ED + Q + + K +++D + L+ G V+ Sbjct: 232 KLSIHYRNTRKDMAKEDDLRRLEYWMGQAELTLTAVAGETKISVRDFLQLQEGDVLTLDR 291 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 R L K Y + G +G+ ++IT Sbjct: 292 RIDEDVDLFLEEKLKYKVQPGTMGRFMAVQITS 324 >gi|291278835|ref|YP_003495670.1| flagellar motor switch protein FliM [Deferribacter desulfuricans SSM1] gi|290753537|dbj|BAI79914.1| flagellar motor switch protein FliM [Deferribacter desulfuricans SSM1] Length = 333 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 100/301 (33%), Gaps = 12/301 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K S R+ K + +L + + + DI+ S Sbjct: 35 KKVSVYDFRRPDRV------SKEQLRSLRNLHDKFARNFSSALSNVLRAITDINLVSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S + F+ S+ N + + ++V +++ LLG + + + ++ R L Sbjct: 89 MTYGEFLMSLPDPTSFNVISMIPLEGNLVLEINPSIVFPIVDKLLGGTGQPLYKI--REL 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + +E+KL I + L + + + + NE V I Sbjct: 147 TDLEQKLLDGVINLLLKELEDVWRQVIP-NVKFKKEVSENSPQVIQIVAQNEVVVLIVFE 205 Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + + L P TL + + + + + V+++ Sbjct: 206 VKFGEASGLINLCFPAITLEPVLGKISSQDWIIGGKKGKFGNYEEQIFLLLEDIFVDVEA 265 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + T+ ++++LK G I + A+L N + + ELG G +++ I Sbjct: 266 VLGENIFTVDEILSLKAGDTILLNKKSTHPAVLILNNLKKFEVELGISGVKKAVKVKRII 325 Query: 305 N 305 Sbjct: 326 E 326 >gi|158422267|ref|YP_001523559.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571] gi|158329156|dbj|BAF86641.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571] Length = 309 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 50/310 (16%), Positives = 112/310 (36%), Gaps = 3/310 (0%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 N + H + L G + + + ++ S +S ++G Sbjct: 2 NAAHSHQDIRDMLLDAAGLSIDRMPMLHVIFDRLGTLCAEGLRQLAASQAFYSLSSIETG 61 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + ++ ++ V + W S+ +G + V T++E L GA P RS S Sbjct: 62 RIGDVLEMYEGMAVAGVFHVPMWDSHIIVGFDRDFVFTMIEALFGADGSEPPVDDERSFS 121 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++++ Q+ L+ + ++ E + N T + Sbjct: 122 NIELRISQAIFEQMQKALHNAFTMVSDTQFKFERQET--RMDFAVIGRRNNLAVTAKFLL 179 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 N +IIPQ L + ++ + + + V + + Sbjct: 180 QALNRGGEMFVIIPQSALTPMRQALARTTPAETSGRDPIWTKQIRDEVNRTQVKVRAILE 239 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L ++ K+GQV+ +T L + + ++ C LG+ Y +R+ ++IN + Sbjct: 240 ERHYPLGEIADFKVGQVLHLQATPRTLVKLESADQPLFWCHLGQAEGAYVLRVEEQINLN 299 Query: 308 QKSLKNFLHK 317 Q+ + + L + Sbjct: 300 QEFVDDILPR 309 >gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7] gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7] Length = 333 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 98/311 (31%), Gaps = 12/311 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 + ARL K + + + K + I ++ +VD+ Sbjct: 30 QEQEKNKVKSYDFRRPARL------SKEYITTLNMIFEEFAKIIGNILSTQIRTNVDVKL 83 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS--HETIP 120 S + F +HS + + I + L + L++ L G+S + Sbjct: 84 ASIEQVSFDEFVHSVPRFTLMGLFRSAPLEGTQIIELNPQLCLQLVDLLCGSSEIRKNDE 143 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + S + +E + + + S + ++ + NE Sbjct: 144 VMSKNSFTDIEMAILEEILTNFSQSFELAWRDVVDLKVKID--STETNPQILQTMSPNEP 201 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQL 238 V + + + + V + + +P + + + + + Sbjct: 202 VVLVTLTVELHGVKTFINVCVPYIFFEGILEKLSLRNWFHSEKETDHTDSGKLEKSLHSA 261 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 VN++ + TL++ + L++G +IP + +LS Y + G GKN + Sbjct: 262 PVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLSVEELPRYFVKPGLKGKNMAV 321 Query: 299 RITDRINFDQK 309 + I + Sbjct: 322 EVLQYIGGETD 332 >gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252] gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252] Length = 348 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 96/280 (34%), Gaps = 7/280 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + ++ + + + L ++ VDIS ++ +S + S Sbjct: 55 SQDQMRVLHYVHEAFARDLSVYLSAQLRTLVDISLSAIDQVLYSEFVMSSAPPSALYVVD 114 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + L I ++E L G + + R LS +E+++ + + + L Sbjct: 115 VHPLHQKIVLELDPRLAIFMVEKLFGGPGIFLRKP--RELSQIERRIMDKVMMRAFRELE 172 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + +LE+ + E ++I S + P L Sbjct: 173 KAWKQIHDI--HLEEAGFESNAEFVQILPGVEPALVATFEVSIYEQRSFINICYPYILLE 230 Query: 208 KTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + + + + + + ++ V + + + L +++TL++G V Sbjct: 231 RMLGHSAMKQWRSSSTTEVPPAVRQRYEEQLEKIEVELRAVMGRTRIKLSEMMTLEVGDV 290 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I R + +E + GR GK+ +RI + + Sbjct: 291 IVLERRVNQPVQVYIGEREKFRAIPGRSGKHRALRILEVV 330 >gi|85060031|ref|YP_455733.1| flagellar motor switch protein FliM [Sodalis glossinidius str. 'morsitans'] gi|84780551|dbj|BAE75328.1| flagellar motor switch protein FliM [Sodalis glossinidius str. 'morsitans'] Length = 317 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 29/285 (10%), Positives = 79/285 (27%), Gaps = 13/285 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S P P + R+ + + + + + + DI+ + Sbjct: 28 SAEPEIKPYDPYIQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 81 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q + + + L S LV +NL G ++ Sbjct: 82 IQIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPILVFIAADNLFGGDGRFPIRMEG 141 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R + + + + + N N+ + T Sbjct: 142 REFTHTEQRIIRRMLRLALEGYQEAWQAIYQLTIEYVHAE-MQVKLTNITSSPNDIMVTT 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ I ++ F + IP + + + + + + R+ + + Sbjct: 201 PFHVEIGSLIGEFYICIPFSMIEPLRELLANPPLE----DQSWRENLVRQIQHSELELVA 256 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 L +++ L V+ +G + + + Sbjct: 257 NFTDVSLQLSEILKLAPADVLNIEKP--EHITAYVDGVPVLTGHV 299 >gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4] gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4] Length = 331 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 94/313 (30%), Gaps = 12/313 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + + RL K + + + K I ++ +V + Sbjct: 27 LDEKEQENKVKSYDFRRPVRL------SKEYISTLNMVFEEFAKISGNILSTQVRTNVGV 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS--HET 118 S + F +HS + I S L + L++ L G++ Sbjct: 81 QLASIEQVSFDEFVHSVPRFTLMGLFHSVPLDGTQIIEISPQLCLQLVDLLCGSTEIRSN 140 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 I +L S + +E + + + E L+ + N Sbjct: 141 IDELSKESFTDIEMAILEEILNNFINAFELAWRDVVEVKGKLD--STETNPQMMQTMSPN 198 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTY 236 E V + + + V + L +P + + + + + Sbjct: 199 EPVVLVTFTVELYGVKTFINLCVPYIFFEGILEKLSLRNWFHSEKETDHTDSGKIEKSLH 258 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 VN++ + TL++ + L++G +IP + ILS Y + G GKN Sbjct: 259 SAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLILSVEKLPRYFVKPGLQGKNM 318 Query: 297 TIRITDRINFDQK 309 + + I + Sbjct: 319 AVEVLQYIGGETD 331 >gi|315121854|ref|YP_004062343.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495256|gb|ADR51855.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 208/318 (65%), Positives = 254/318 (79%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MR + K+ SPLHP+LLARLTGKLGDKKTIE+IS +LG LY K LPK FKE++D+D+++ Sbjct: 1 MREKRTSKDISPLHPVLLARLTGKLGDKKTIERISYNLGQLYTKLLPKSFKEELDVDLNV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SY + QSGKFSHI+HSFKE FVF + SL+ SSN FIGCSNNLVI LLE LL AS ET Sbjct: 61 SYGNYQSGKFSHILHSFKERFVFYKTSLNGRSSNLFIGCSNNLVIVLLETLLRASCETTQ 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +NRSLST+EKKLA + +I+ VL+QCIST Q + L++ Y++D+LK+NTN LSNEF Sbjct: 121 KSHNRSLSTIEKKLAHLIVTKIATVLDQCISTAQNNRVTLDENYELDFLKQNTNLLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VT I M +TI+N+AS F LIIPQETLLK TLISLS Q KS ED D TY+++V Sbjct: 181 VTAITMVVTIDNIASLFTLIIPQETLLKITLISLSEQGKSAIPLEDCPDQLNGNTYKIHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I++RINL+K TLKDV+ LKIGQV+PFL +EK AIL+ANGKEIYSCELGR+GKNYT+RI Sbjct: 241 KIESRINLQKITLKDVLNLKIGQVMPFLDKEKVYAILNANGKEIYSCELGRIGKNYTVRI 300 Query: 301 TDRINFDQKSLKNFLHKR 318 DRINFDQ+SL+NFLHK Sbjct: 301 QDRINFDQESLRNFLHKE 318 >gi|118581837|ref|YP_903087.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM 2379] gi|118504547|gb|ABL01030.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM 2379] Length = 325 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 3/265 (1%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 + + ++ ++ V+I +S KF I + + + I Sbjct: 56 IYDSFIRYNRVSLSNRLRKVVEIKKIGARSYKFDDFIQTLPSPVCMAIFKIEPLKGAALI 115 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + LV++L+++LLG + + + NR +++E +L ++ +A I L + + + Sbjct: 116 SFDSTLVLSLVDSLLGGTGTSKVSMANRMFTSIELRLVEKIVADILQDLEKAWAPLYATH 175 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 NL + + T+++ + IE+++ + V +P T+ + Sbjct: 176 MNL--LRMEMNPRLINIVPPEYQIVTMSLKIQIEDISGNMVFAVPYMTIEPIRDKLKAGM 233 Query: 218 N-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + + I + TL +++ L G I + + Sbjct: 234 QFDLMAIDPQWSSRLSSGLMEAPLEIVVEMGNANITLGELLDLAAGDTIMLDKPCSSELL 293 Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301 + G Y G N I+IT Sbjct: 294 VKVEGTTKYFAIPGIRHGNRAIQIT 318 >gi|27381992|ref|NP_773521.1| hypothetical protein bll6881 [Bradyrhizobium japonicum USDA 110] gi|27355162|dbj|BAC52146.1| bll6881 [Bradyrhizobium japonicum USDA 110] Length = 313 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 104/298 (34%), Gaps = 3/298 (1%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 L G + + + + S + + II ++ N Sbjct: 18 LLDAAGISIERMPMLNVIFDRMAASCTDSLQPMAGTPCYFSVNGITNDRVGDIIKDYEAN 77 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 V + W S I + V T++E + G+ P RS S +E +L + Sbjct: 78 AVAAVLYAEQWDSRIIIMLDRDFVFTMVEAMFGSDGAEPPLDVERSFSNIEIRLVQALFE 137 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 + + L + T + +E + S N+ + LI Sbjct: 138 RFAKALQSAFAGTSNVTFRVERVETA--MASLAIGRSGNMSICANIMLQALYRGGQMFLI 195 Query: 201 IPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 IP L + + + ++ V + ++ K TL DVV Sbjct: 196 IPHSALNPLRQKLAHVVVSDGRASDPRWREQMESEVHRTEVTLSAVLDEKMVTLGDVVKF 255 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 ++GQV+ +T A L +N + ++ C++G++ Y +++ D ++ ++ + + L + Sbjct: 256 QVGQVLELEATPRTLARLESNNQVLFWCQIGQLDGYYAMQVADPVDQKREFVDDILSR 313 >gi|258592491|emb|CBE68800.1| putative Flagellar motor switch protein fliM [NC10 bacterium 'Dutch sediment'] Length = 333 Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 86/284 (30%), Gaps = 7/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + L + K + + V+I T + ++ I S Sbjct: 47 SKEQLQALQMLHDRFAKQMGGTLSPLLRTFVEIRPTLVEQMAYAEYIASVAYPACLGIFG 106 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + L+ +++ +LG + R L+ +E+ L + + + L Sbjct: 107 MKPLKGGAIVELPPRLISYIIDRILGGAGRISDV--ARELTEIERALVSKLLRRTLEDLR 164 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 S L + + V I ++ I +V L P L Sbjct: 165 NAWSRVSLFQFELLNLEV--NPGFLQLAAPTDMVILIGFDVKIGDVEGMMSLCFPFSMLE 222 Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 E E A+ + +++ + T+ ++ LK G + Sbjct: 223 PVIPNLSLRRWIAGHREETDEVGAAEIAKAMPAVGLSVRALLGSIPLTVHELSFLKAGDI 282 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + +L G Y ++G + ++I I+ ++ Sbjct: 283 VRLDIGASSLGVLEVEGVPKYVVKVGTSHRKRAVQIVADISEEK 326 >gi|54294679|ref|YP_127094.1| flagellar motor switch protein FliM [Legionella pneumophila str. Lens] gi|53754511|emb|CAH15995.1| Flagellar motor switch protein FliM [Legionella pneumophila str. Lens] Length = 353 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 78/286 (27%), Gaps = 5/286 (1%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 TG+ K + + + D +I K + S Sbjct: 71 FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNP 130 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 + I + V L++ G + + Q + E ++ + Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 ++ L + + F D + E + + +F I Sbjct: 191 KLVTNLTHAWEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFLLNFGKETGAFYFI 248 Query: 201 IPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 +P L L + + + I+ + + + + + +TL V+ Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAW 308 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 K+G +P L G ++ LG + ++I I Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSANEKRALKIIKIIR 352 >gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855] gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8] gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855] gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8] Length = 372 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 103/290 (35%), Gaps = 7/290 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T ++I + + + + L ++ VDIS T+ +S + S Sbjct: 55 SQTQKRILNQVHESFARDLSVYLSAQLRTIVDISLTAVDQVLYSEFVMSSAPPSALYVLR 114 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 LV+ +E L+G + + + +R +S +E+++ R + + L Sbjct: 115 EDELEYRSIFEIDPRLVVYTIEKLMGGDGQLMDE--SREVSPIEQRIMSRVMKRAYRKLE 172 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E ++E+ + + E + ++ + + S + P L Sbjct: 173 ESWRKAYEL--SVEEVAFESNAEFVQIIPAAEPALVASFDVRVYDEPSFINICYPYLMLE 230 Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + ++ D + + VN+ + + ++ L+ G V Sbjct: 231 QMLGRSGMEQWISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDV 290 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IP + NG++ + GR G+ +RIT + + + Sbjct: 291 IPLDRETDDPIKVFVNGEQKFEAVPGRSGRQRALRITAAESPENVEFDSL 340 >gi|254497501|ref|ZP_05110294.1| flagellar motor switch protein FliM [Legionella drancourtii LLAP12] gi|254353316|gb|EET12058.1| flagellar motor switch protein FliM [Legionella drancourtii LLAP12] Length = 358 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 38/300 (12%), Positives = 88/300 (29%), Gaps = 11/300 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 L+ R+ + + + + D +I+ Sbjct: 68 DSEVKTLNFSSQERIVKGK------LPVLDRIYDRAVRSFATDIYQLTAKDFEITQDQML 121 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 K + S + S I + V L++ G S + + Q Sbjct: 122 IIKHRDFMESLPNPSLMSIYKFKPLRGKGIIMFDSTFVYDLVDYYFGGSTQFLAQKDRTD 181 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 + E ++ + ++ A L + + F D + +E + + Sbjct: 182 FTATELRVMEAVTTKLIANLTLAWKPIIQLD--ISKFNDETNPQLVNIAEPDEMLLVVRF 239 Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 ++ F I+P + L + + + + + + + I + Sbjct: 240 SLDFGKETGDFYFILPYTMVEPIKEQLELGASRPDDEIDPNWVKSLKEELMDVELVISSA 299 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + K+TL V++ + G IP + L G Y+ LG + ++I I+ Sbjct: 300 MAQTKSTLGTVMSWQAGDFIPMEMK--EIVTLDVEGTPGYTATLGTANEKRALKIIKNIS 357 >gi|54297705|ref|YP_124074.1| flagellar motor switch protein FliM [Legionella pneumophila str. Paris] gi|53751490|emb|CAH12908.1| Flagellar motor switch protein FliM [Legionella pneumophila str. Paris] Length = 353 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 81/286 (28%), Gaps = 5/286 (1%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 TG+ K + + + D +I K + S Sbjct: 71 FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMKSLPNP 130 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 + I + V L++ G + + Q + E ++ + Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 ++ A L + + F D + E + + SF I Sbjct: 191 KLVANLIHAWEPIIQLD--ITKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGSFYFI 248 Query: 201 IPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 +P L L + + + I+ + + +++ + +TL V++ Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELSVSASMAETVSTLGQVMSW 308 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 K+G +P L G ++ LG + ++I I Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSTNEKRALKIIKIIR 352 >gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense Az-Fu1] gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense Az-Fu1] Length = 322 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 10/302 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K P + ++ + + K + + + +S S Sbjct: 26 KREKPFDFSKVEKIKKGGF------PGLEVIFERWAKIFREEIRSLFPVINMVSKNSITV 79 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF I+ ++ ++ + + + + +V L+ L G ++ R Sbjct: 80 MKFGDFINKIPLPASYTIFTMKPLNESALLVIDSRVVFNLISALFGG-GARPFKIEGRDF 138 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + +E + + + + T +E E V + M Sbjct: 139 TKLELNIIHDFVDTVLTSFEKIWQTVYPVE--VERKSVELNPFLVRIVSPAEKVIVVEMI 196 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + IE + F PQ L I S + S D + +K ++ +N ++ Sbjct: 197 LDIEGLEVPFSFAFPQMMFLPLKDIIFS-ETSSLEIPADWKENILKKLSKVELNFTLELS 255 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +++++ L++G I ++ L GK ++ +LGR K Y I DR+ + Sbjct: 256 RFTMLVEELLNLEVGSDIILNVKKDDSINLMVEGKPKFTAKLGRYDKKYAAMIVDRVKGE 315 Query: 308 QK 309 + Sbjct: 316 ED 317 >gi|84502561|ref|ZP_01000697.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597] gi|84389373|gb|EAQ02170.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597] Length = 317 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 96/298 (32%), Gaps = 4/298 (1%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 + + K I + + + K + + S + + S Sbjct: 18 VEEEIIQKAKRSYERLPILEVILERFSLAVGPAIKHYVGAICESSIDAIDYLPTGDALES 77 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + S W F + + +I+ LE G + RS + +EKK+ Sbjct: 78 MPSPALISVIESPDWDGPFALVIDPSFLISTLEITFGGRMAGRSEWVPRSFTAIEKKIGT 137 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + L++ + + + N + M++T+++ Sbjct: 138 EVTQLMLNELSETFGQLAQIEFTISHIET--NAQAMVLAPPNTGCVRLRMHVTMDDRDGY 195 Query: 197 FVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 F +++P L + + S + +V + R+ K L++ Sbjct: 196 FYIVMPFNALSNIRNMLVQPFHGGSLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQE 255 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLK 312 V+ K GQV+ L +G E+Y + G R ++IT+++ +++ Sbjct: 256 VLEWKRGQVLDLGIEVDQPVSLICSGHEMYMAQTGKRKNGRMALKITEQLKDEEEMTD 313 >gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens GS-15] gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens GS-15] Length = 327 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 96/287 (33%), Gaps = 4/287 (1%) Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84 + K + + ++ ++ V+I S KF +H+ + Sbjct: 42 SSESKGNIPNLDIIYDSFIRYQRGTLSNRLGRIVEIKKVGAASFKFDDFLHTMPSPVAMA 101 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQIS 143 I + LV T+++ +LG + ++ P + NR +++E +L ++ + + Sbjct: 102 VYKADPLKGAALIAFDSTLVFTIVDCILGGTGSSVVPTVGNRMFTSIELRLVQKIVMDVL 161 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 A L + + + + V T+ M + IE + + +P Sbjct: 162 ADLEKAWAPIYATKMGF--LRMEMNPRLVNIVPPEYQVVTMEMEIQIEEIIGKMIFAVPL 219 Query: 204 ETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 T+ + Q +++ + +++ + ++ +++ L G Sbjct: 220 TTIDPVREKLKNGAQVDMMAIDPQWSFRLSKELLEAPLDLSVEVGGAIISMDELLNLTPG 279 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + ++ G + G N +IT I ++ Sbjct: 280 DTIMLDTPCNSDLVVKVGGVSKFMSAPGLRHGNKAAQITTIIGKGRE 326 >gi|115523171|ref|YP_780082.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] gi|115517118|gb|ABJ05102.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] Length = 275 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 96/274 (35%), Gaps = 3/274 (1%) Query: 45 FLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104 + + S + S + S I+ ++ + + +W + IG + + Sbjct: 4 LCAESLRSMSPSQSYFSLSGVGSDRLSEILDRYEGEAIAAVFYAQAWDARVLIGFDRDFI 63 Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 T++E L GA P R S VE +A+ + L S + + L+ Sbjct: 64 YTMIELLFGADGAEPPLDMPRVFSNVELHVAEALFERFGKALQSSFSMASDVTFTLDRVE 123 Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQ 223 + N + + + + ++IP L +S + Sbjct: 124 T--RMDYLAIGRPNNMAVSAQILLQGLDRGGEMFIVIPHAALNPIRTALSQIVTGESAST 181 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 + + + V + + + TL +V +GQVI T L N + Sbjct: 182 DPNWSRQLHSEIQRTEVVLRAVLEERPFTLGEVAKFHVGQVIKLNATPNTMVRLECNNQR 241 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 ++ C++G++ Y++++ + + ++ + L + Sbjct: 242 LFWCQMGQLNGAYSLQVKESADQKREFIDGILSR 275 >gi|148359336|ref|YP_001250543.1| Flagellar motor switch protein FliM [Legionella pneumophila str. Corby] gi|148281109|gb|ABQ55197.1| Flagellar motor switch protein FliM [Legionella pneumophila str. Corby] Length = 353 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 81/286 (28%), Gaps = 5/286 (1%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 TG+ K + + + D +I K + S Sbjct: 71 FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMKSLPNP 130 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 + I + V L++ G + + Q + E ++ + Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 ++ A L + + F D + E + + +F I Sbjct: 191 KLVANLIHAWEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFI 248 Query: 201 IPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 +P L L + + + I+ + + +++ + +TL V++ Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELSVSASMAETVSTLGQVMSW 308 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 K+G +P L G ++ LG + ++I I Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSTNEKRALKIIKIIR 352 >gi|148259983|ref|YP_001234110.1| flagellar motor switch protein FliM [Acidiphilium cryptum JF-5] gi|326403062|ref|YP_004283143.1| flagellar motor switch protein [Acidiphilium multivorum AIU301] gi|146401664|gb|ABQ30191.1| flagellar motor switch protein FliM [Acidiphilium cryptum JF-5] gi|325049923|dbj|BAJ80261.1| flagellar motor switch protein [Acidiphilium multivorum AIU301] Length = 337 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 41/312 (13%), Positives = 102/312 (32%), Gaps = 7/312 (2%) Query: 3 GQSIHKNTSPLHPILL---ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 G ++ + P +RL D ++ + + L + +V+ Sbjct: 28 GGALEDDALQPEPEAEQEASRLLYGRADSYERLPMAEVVFERLSRILAGSLRNLFQDNVE 87 Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + T S + + + W + I V L E LLG Sbjct: 88 VRLTRLASRRLADSFAEIAPMALLGVFRAREWDNLGLIHVDAMTVSNLTEILLGGRRVAA 147 Query: 120 PQ-LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 + ++++ + L +R I + L + + + + E + T ++ Sbjct: 148 ATGQLPKPVTSISRNLTERLIRVVLHDLRNSFAPICDVTFDFERTET--DPRFATIGRNS 205 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQ 237 T +++ +I+P TL + L + + A + + Sbjct: 206 GVALTARLSLHSAGRNCMIDIILPFATLEPVRELLLQQFMGEKFGRDSIWESHLAEELWH 265 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 ++ ++ ++ + L V+ L++G +IP + L ++++ LG Sbjct: 266 TDIELEAVLDEQTMKLGAVMDLRVGDIIPINAPRGSDVTLRCGSVDLFAGRLGVRHGRLA 325 Query: 298 IRITDRINFDQK 309 I I+ +++ Sbjct: 326 AEIRGWISRERE 337 >gi|296107383|ref|YP_003619083.1| flagellar motor switch protein FliM [Legionella pneumophila 2300/99 Alcoy] gi|295649284|gb|ADG25131.1| flagellar motor switch protein FliM [Legionella pneumophila 2300/99 Alcoy] Length = 353 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 33/286 (11%), Positives = 77/286 (26%), Gaps = 5/286 (1%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 TG+ K + + + D +I K + S Sbjct: 71 FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNP 130 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 + I + V L++ G + + Q + E ++ + Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 ++ L + + F D + E + + +F I Sbjct: 191 KLVTNLIHACEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFI 248 Query: 201 IPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 +P L + + + I+ + + + + + +TL V+ Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAW 308 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 K+G +P L G ++ LG + +++ I Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSANEKRALKVIKIIR 352 >gi|52842019|ref|YP_095818.1| flagellar motor switch protein FliM [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629130|gb|AAU27871.1| flagellar protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 355 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 33/286 (11%), Positives = 77/286 (26%), Gaps = 5/286 (1%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 TG+ K + + + D +I K + S Sbjct: 73 FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNP 132 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 + I + V L++ G + + Q + E ++ + Sbjct: 133 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 192 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 ++ L + + F D + E + + +F I Sbjct: 193 KLVTNLIHACEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFI 250 Query: 201 IPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 +P L + + + I+ + + + + + +TL V+ Sbjct: 251 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAW 310 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 K+G +P L G ++ LG + +++ I Sbjct: 311 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSANEKRALKVIKIIR 354 >gi|317121825|ref|YP_004101828.1| flagellar motor switch protein FliM [Thermaerobacter marianensis DSM 12885] gi|315591805|gb|ADU51101.1| flagellar motor switch protein FliM [Thermaerobacter marianensis DSM 12885] Length = 322 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 33/310 (10%), Positives = 93/310 (30%), Gaps = 6/310 (1%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + K I L K + + + + ++ V++ Sbjct: 1 MNQGTARKGGRRSPVIRLYDFRRPDKFSKEQLRTLAMIHENVARLATGFLSGQLRTVVEV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + I V + +L S+ + ++ +++ L Sbjct: 61 DVLEVEETTYGEFITGLANPTVVAVFNLPPLESSAVMDLEPSIAFPMVDRLF--GGPGTG 118 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R L+ +E + + + + + + + L + NE Sbjct: 119 AAAGRGLTEIETVVMRVILQGLLGAVAEGWGQLVQVQGELVT--VAANPLFVQVQPPNEI 176 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQL 238 + M + ++ L +P L Q + + + + Sbjct: 177 AVRVVMAVRFGQQEGAWRLCLPYPLLEPVLPRLAVHQYYARETKSHARSRERWEEGLRHV 236 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + + + T+++++ L+ GQV+ R + G+ + GR G + Sbjct: 237 PLPVTVVLGRTRLTVRELLALEPGQVLRLDTRAGGLVDVLVAGRPKFRGLPGRAGPRLAV 296 Query: 299 RITDRINFDQ 308 ++ +R+ ++ Sbjct: 297 QVVERVAEEE 306 >gi|291558209|emb|CBL35326.1| Flagellar motor switch protein [Eubacterium siraeum V10Sc8a] Length = 319 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 109/315 (34%), Gaps = 20/315 (6%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + + + T K KI + Y + L + L + Sbjct: 14 LNTHEEKEEIKEYDFRTPKKFT------KEQIKILERIFENYSRHLSSYITGLLRLYCKV 67 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-----SNFFIGCSNNLVITLLENLLGAS 115 S S + K+ ++ + + L SN + SN+L T+++ +LG Sbjct: 68 SLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNAVLQLSNSLTFTMIDRMLGGR 127 Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 +R + +E + + + + +++++Q +++P LE + + Sbjct: 128 GTYQDT--DRDFTEIEINVMRGIVERFTSLMSQAWDGYVDTNPKLESIET--NSRVISAA 183 Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-----SLSSQNKSENQSEDLIDP 230 ++E + + M +T+ + S + T+ + S + S + + + Sbjct: 184 DADETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAKFSSGKRAGSPTKETERKEN 243 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 Q + + ++ TL+DV+ L++ +IP L + +LG Sbjct: 244 LMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITDNVQLKVGSTCWFDGKLG 303 Query: 291 RVGKNYTIRITDRIN 305 + RI + + Sbjct: 304 TLNGKKAFRIDNILK 318 >gi|258404714|ref|YP_003197456.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM 5692] gi|257796941|gb|ACV67878.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM 5692] Length = 336 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 34/271 (12%), Positives = 81/271 (29%), Gaps = 4/271 (1%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 + + + ++ V + + ++ F + + +E + S S + Sbjct: 60 ILDAFARNSGISMANRLKRSVSVKRVAIETETFENFLQDLQEQSLIGIVSFEPLRSGGLL 119 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 L LLE + G + E + +R L+++E + K + E Sbjct: 120 IFDCPLSFCLLEVMFGGNSEAGISIPDRELTSIEINVLKNVMRDSCQDWEAAFEPLDELK 179 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 NL + + V ++ N+ L+IP + + Sbjct: 180 TNLV--QAEINPRLVSIVSPETEVLVSRFSVKAGNIFGQMSLVIPFFAIEPYKEKLKNRM 237 Query: 218 NKSENQS--EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S + + ++ + + T+++++ LK G +I + Sbjct: 238 FDVITVSGGQAWTKTIHDEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQ 297 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + K + G +RIT Sbjct: 298 RVLVEQKPKFQAVAGTRKGKKAVRITGTTGQ 328 >gi|95929861|ref|ZP_01312602.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM 684] gi|95134157|gb|EAT15815.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM 684] Length = 329 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 107/302 (35%), Gaps = 4/302 (1%) Query: 4 QSIHKNTSPLHPILLA-RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 +S ++ SP + + L G L + + L ++ V + Sbjct: 27 ESSDEDYSPEPRAVSSFSLVQSKGQATMRLANFDILLDGFARNLSFSLSNRLQRAVSVLR 86 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 S S ++ +IH + ++ SL N + +++ +E +LG E L Sbjct: 87 ESISSMEYETLIHECSNHELYGILSLDPLKKNGLLIFDSSISFAQVEIMLGGVAEHSGDL 146 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R ++T+E + K I + LN+ S + +L + T ++ + Sbjct: 147 PQRGMTTIETNILKEVIRESCLELNKAFSPIEGLESDLVRVE--SNPRLVTIVPADTEMM 204 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + I ++ L+IP +L S + A + ++V + Sbjct: 205 VAAFRVKINEISGLLRLVIPYSSLDPIREKLKSELG-ASGPGGQWRSHLAHEVEDMDVAV 263 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ +++++ L++G ++ + GK +S G +R+ + Sbjct: 264 SAQLAQITLNVREILDLRVGDILQLDCSVDQPVSVMVEGKGKFSGLAGLRDGKKAVRVLE 323 Query: 303 RI 304 R+ Sbjct: 324 RL 325 >gi|330940699|gb|EGH43710.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. pisi str. 1704B] Length = 222 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 79/224 (35%), Gaps = 6/224 (2%) Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 + A + LV L++N G ++ R + E ++ + + Q Sbjct: 1 SLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQ 59 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 L + E + E +E V ++ ++ + + Sbjct: 60 AFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTM 117 Query: 202 PQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 P + + + Q+ ++Q E ++ +NV + T I ++ L+D++ ++ Sbjct: 118 PYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMR 177 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 G VIP ++ ANG + +LG +++ + I Sbjct: 178 PGDVIPVEL--SDSLVMRANGVPSFKVKLGSHKGKMALQVIEPI 219 >gi|217976217|ref|YP_002360364.1| surface presentation of antigens (SPOA) protein [Methylocella silvestris BL2] gi|217501593|gb|ACK49002.1| surface presentation of antigens (SPOA) protein [Methylocella silvestris BL2] Length = 314 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 52/300 (17%), Positives = 106/300 (35%), Gaps = 3/300 (1%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 RL G + + + ++ S + + + ++ +++ Sbjct: 17 ERLLDAPGIAIDRMPMLHVILDRMIAQCSENLRQLSAPPAFFSVDTVAARRVGDVLDAYE 76 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 +W S IG ++ + TL E L G P R LS++E +LA + Sbjct: 77 NKVAIGVYHALAWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLSSLELRLAHKA 136 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + L ST +++ LE L N F T + + I Sbjct: 137 LDLFGRALQSAFSTVSDTAFKLERVET--RLDFAVIAPRNAFGVTAKIKLRILGRHGEMF 194 Query: 199 LIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 ++IPQ L + + + + + + + + I + L D+ Sbjct: 195 ILIPQAALNSVRQQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVIEERHFLLGDIA 254 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 LK+G ++ T L N + ++ C LG+ YT+RI + ++ +Q+ + L + Sbjct: 255 DLKVGGILQLKSTPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSREQEFVDEMLSR 314 >gi|116624443|ref|YP_826599.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus Ellin6076] gi|116227605|gb|ABJ86314.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus Ellin6076] Length = 293 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 93/270 (34%), Gaps = 4/270 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 + L + + L + + ++ S + ++ + LS + Sbjct: 1 MRAIHLLHDTFVRNLVSSLSAYLRSYLTVNLVSVEQLSYAEFLDGLPSPTCIVSLGLSPY 60 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 N + + +LV +LE LLG + ++ + R ++ +E++L I L + Sbjct: 61 DGNGVLELNPSLVFPILEMLLGGTGKSSATI-QRDITEIEQRLLDGLFRIILQDLREAWK 119 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 +E + NE V +I + + I + +P + Sbjct: 120 AVTNVDFTIESMETE--PQLLHLLAPNEAVVSIGIEVRIGETVGMMNIAMPSIVIKMMRQ 177 Query: 212 ISLSSQNKSENQSEDLID-PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + + R Q + ++ + ++ D+++L+ G ++ F Sbjct: 178 KFDQQWSVRKTHASEAEQFRVLRVLRQATLTVEALMEGPTLSVGDLLSLREGNLLTFDFP 237 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L NG ++ ++ G+ +I Sbjct: 238 VERPIELVVNGACKFTGQVVSTGRKRACQI 267 >gi|291532053|emb|CBK97638.1| Flagellar motor switch protein [Eubacterium siraeum 70/3] Length = 319 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 108/315 (34%), Gaps = 20/315 (6%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + + + T K KI + Y + L + L + Sbjct: 14 LDTHEEKEEIKEYDFRTPKKFT------KEQIKILERIFENYSRHLSSYITGLLRLYCKV 67 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-----SNFFIGCSNNLVITLLENLLGAS 115 S S + K+ ++ + + L SN + SN+L T+++ +LG Sbjct: 68 SLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNAILQLSNSLTFTMIDRMLGGR 127 Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 +R + +E + + + + +++++Q ++ P LE + + Sbjct: 128 GTYQDT--DRDFTEIEINVMRSIVERFTSIMSQAWDGYVDTKPKLESIET--NSRVISAA 183 Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-----SLSSQNKSENQSEDLIDP 230 ++E + + M +T+ + S + T+ + S + S + + + Sbjct: 184 DADETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAKFSSGKRAGSPTKETERKEN 243 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 Q + + ++ TL+DV+ L++ +IP L + +LG Sbjct: 244 LMSTLSQSELTVTAVLDDTVLTLRDVLNLQVNDIIPLNKPITDNVQLKVGSTCWFDGKLG 303 Query: 291 RVGKNYTIRITDRIN 305 + RI + + Sbjct: 304 TLNGKKAFRIDNILK 318 >gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484] gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484] Length = 315 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 100/295 (33%), Gaps = 12/295 (4%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 HK PL L + + + + L + M + Sbjct: 29 THKEVKPLDISTLEHI------SASRIAGLELILERWVSSLKRSLSSVMVSIPAVLKEGV 82 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +FS + ++ + ++ + +L G + ++ + Sbjct: 83 SVVRFSEFVSQLPFPSAIGFFNVHPLRGVSMLVLDPRIIYMTVSSLFGGPPKPY-KIEGK 141 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + +E ++ ++ + L + +T E + T E + Sbjct: 142 EFTKIELRIVQKILEICYRELEEVWNTVMEVK--VIPQGLETNPSLLTIARPKEKFIVLK 199 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +++E L IP+E+L + + +E +S ++ + + ++ +N++ Sbjct: 200 LLVSLEGSEGYMYLAIPEESLDPYKEVL---KGITELRSPEVSNKLLQALEEIPLNLEVI 256 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + +K L D++ +K+G + + + +G LG+VGK I+I Sbjct: 257 LGRQKIQLGDLLNMKVGDTMILQKGLREPVEVRVSGVPKALAFLGQVGKRKAIKI 311 >gi|167750716|ref|ZP_02422843.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702] gi|167656395|gb|EDS00525.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702] Length = 331 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 109/315 (34%), Gaps = 20/315 (6%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + + + T K KI + Y + L + L + Sbjct: 26 LDTHEEKEEIKEYDFRTPKKFT------KEQIKILERIFENYSRHLSSYITGLLRLYCKV 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-----SNFFIGCSNNLVITLLENLLGAS 115 S S + K+ ++ + + L SN + SN+L T+++ +LG Sbjct: 80 SLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNAILQLSNSLTFTMIDRMLGGR 139 Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 +R + +E + + + + +++++Q +++P LE + + Sbjct: 140 GTYQDT--DRDFTEIEINVMRGIVERFTSLMSQAWDGYVDTNPKLESIET--NSRVISAA 195 Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-----SLSSQNKSENQSEDLIDP 230 ++E + + M +T+ + S + T+ + S + S + + + Sbjct: 196 DADETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAKFSSGKRAGSPTKETERKEN 255 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 Q + + ++ TL+DV+ L++ +IP L + +LG Sbjct: 256 LMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITDNVQLKVGSTCWFDGKLG 315 Query: 291 RVGKNYTIRITDRIN 305 + RI + + Sbjct: 316 TLNGKKAFRIDNILK 330 >gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum WM1] gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum WM1] Length = 339 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 105/281 (37%), Gaps = 9/281 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA--SLSS 90 KI S+ Y + ++S + + ++ ++ +N V + +L Sbjct: 53 KILKSIFDNYSRIAGSQINSLFRTSSELSVVTVEEQRYYEFGNALSDNDVLTLVNVTLPD 112 Query: 91 WSSNFFIGCSNN--LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S N + + + L+++L++ +LG + + + + +E L +R I I L Sbjct: 113 SSKNPPLLINASMTLMLSLIDRMLGGVGDDTAVDTSYTYTEIEMALYRRVIQYIIGALKD 172 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S+ + L + +E + + +++ ++ + + IP L+ Sbjct: 173 SWSSYINLNFELSRLE--ENPSMFQEIGVDETIVIVVLDVDMKECSGRLNVCIPGNLLMN 230 Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 I ++ E S+D ++ + ++ TL DV L +G VI Sbjct: 231 IFDIMDKRKHSAMGDEANSQDNKQEIMNSIKASDLLVRAQVGESMITLDDVYNLHVGDVI 290 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + + L G+ + +LG +N +RI D + Sbjct: 291 NLGTPKDSDVQLYVEGQPWFRGQLGVHKRNVAVRIEDHVET 331 >gi|221635435|ref|YP_002523311.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM 5159] gi|221158064|gb|ACM07182.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM 5159] Length = 334 Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats. Identities = 37/308 (12%), Positives = 94/308 (30%), Gaps = 14/308 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P + K + S+ + +F ++ V + Sbjct: 22 PYDFRRPDKF------SKDHIRSIQSIHEAFDRFASNYLSAQVRSAVHCELGPIEQTTLG 75 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + V A L + L++ +LG + E P +++ +E Sbjct: 76 DYLDRLPSQVVLCIAELEPLVGRIVLEIDFATASRLVDRMLGGAGEERPPFTATTITEIE 135 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 L + + L P + ++ + +E V + + + Sbjct: 136 LLLLRELGNGLFGELAAAWEQVIRLQPQ--PCEVVLSGQQIQGMMPSEIVLLVQHQVRLF 193 Query: 192 NVASSFVLIIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 +F +++P TL + N S +I + ++++ + + Sbjct: 194 ESEGTFTVVLPASTLEPVLPRLNARVLFANPRRATSPQVIADLMAQLEEVSLQLRVELGR 253 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD- 307 + T+++++ L+ G V+ + + + G+ G++ IRI + D Sbjct: 254 ARLTVRELLALEPGDVLVLDQDVSFPLAVYVENEPCFYAFPGQRGRSLAIRIAGTLTEDW 313 Query: 308 --QKSLKN 313 + L Sbjct: 314 PRDEELDQ 321 >gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter proteolyticus DSM 5265] gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter proteolyticus DSM 5265] Length = 326 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 38/307 (12%), Positives = 87/307 (28%), Gaps = 13/307 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q+ K +L K + L + + + + IS Sbjct: 26 QTKEKVVRKYDFRRPDKL------SKEQLRTIQMLHENFARGASTELAGYLRSAMSISIV 79 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S + I S + + + + S + V +++ LLG + + ++ Sbjct: 80 SVDQVTYQEYIRSLSDPTFMYLVPIIDVT-SVIFEMSLDFVFAIIDKLLGGPGKPLREV- 137 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R L++VE L R + + + + L ++ V Sbjct: 138 -RELTSVEATLMNRVMDVYLKHWLEAWKPIVQWN--LGKPTLEYSPGFVQIMPGSDVVIV 194 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVN 241 I + + + +P + + + S+ +D + V Sbjct: 195 ITYEEKLGEKTAIGTICVPYMAMEGFVQNLTAHRWFGVSKPTPDDWKTTLMEVIEDITVE 254 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + +++ +G VI R L G G + + +T Sbjct: 255 VSAVLGEASVGIGEILKWNVGDVIELSRRSDEEVDLLVEGNLFAKGIPGIYQRRKALLVT 314 Query: 302 DRINFDQ 308 R D+ Sbjct: 315 GRSEEDR 321 >gi|330899437|gb|EGH30856.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. japonica str. M301072PT] Length = 216 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 6/218 (2%) Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + LV L++N G ++ R + E ++ + + Q L Sbjct: 1 IKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLK 59 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + E + E +E V ++ ++ + +P + Sbjct: 60 EAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIE 117 Query: 208 KTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + + Q+ ++Q E ++ +NV + T I ++ L+D++ ++ G VIP Sbjct: 118 PIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIP 177 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ ANG + +LG +++ + I Sbjct: 178 VEL--SDSLVMRANGVPSFKVKLGSHKGKMALQVIEPI 213 >gi|329897652|ref|ZP_08272176.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC3088] gi|328921101|gb|EGG28510.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC3088] Length = 340 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 80/271 (29%), Gaps = 9/271 (3%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 + + + E + I + ++ F + + ++ + Sbjct: 58 MITERFTRHFRLGLLEVLRSSPKIHVDAVKTVVFEKYLSDLAPPLSVNTIRINPLRGSSL 117 Query: 97 IGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + N+V L+N G I R + E ++ + I A L + + Sbjct: 118 VVLDPNVVFAALDNFFGGFGRGIAGLPPGRMFTPTETRIINIMMELIFASLKEAWAPIMP 177 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISL 214 E+ + + V ++++ I ++ P +L Sbjct: 178 IEC--ENVSAEINPQFVQIADEKDLVVVCHLSVEISEAEVGRIDIVYPFASLKPIRDELR 235 Query: 215 SSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + D D + + + L +L+ G V+ F E Sbjct: 236 ARVQSDTDTPRDAGLWHDDLETSASYAELEAVVTLGETEIPLHQFQSLRSGDVLWFKKYE 295 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302 A + G +++ ++G V I+I + Sbjct: 296 D--AQMIIEGVPVFAADVGTVKGQVAIKIVN 324 >gi|269836614|ref|YP_003318842.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM 20745] gi|269785877|gb|ACZ38020.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM 20745] Length = 302 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 86/284 (30%), Gaps = 6/284 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + ++ + +F K+ V +S + + + Sbjct: 17 SKDHLRSIQAIQEGFGRFAGNFLASKVRAAVHVSLVHVEQSTLGEFLDGLPFPTTLFISP 76 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL-YNRSLSTVEKKLAKRTIAQISAVL 146 L + NL +++ +LG ++ P S++ +E L + + A Sbjct: 77 LDPLVGQAVMQIDMNLAFLVIDRMLGGPGDSTPAPRAGASVTEIEMLLLEELGQGLFAEF 136 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + + L E I + +E + +P L Sbjct: 137 VNAWAQVTSL--RAPHCEVALGAMQVQGLLPTEIALVIRHEVRMEGATGRLTICLPASML 194 Query: 207 LKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + N E L A + ++++ + + + D++ +++G Sbjct: 195 EPILPRLNARLLFANPRAGVGEQLERDLAAQLERVSLAVRVELGRVTVRVADLLQVEVGD 254 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 VI + + + + + G++ +RI +R+ D Sbjct: 255 VIRLDTAADSALPVLVEDRVRFLGQPGQIAGQLAVRIVERVTDD 298 >gi|13472567|ref|NP_104134.1| flagellar motor switch protein FliM [Mesorhizobium loti MAFF303099] gi|14023313|dbj|BAB49920.1| flagellar motor switch protein; FliM [Mesorhizobium loti MAFF303099] Length = 315 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 126/311 (40%), Gaps = 9/311 (2%) Query: 10 TSPLHPI-----LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TSP P ++ RL G G+ + + L K ++ + V + + Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEAAQVIGTGRGMAERAAPLLQKSLTSELGVPVTVDLRA 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + F + + S+ S + + ++ L G ET Sbjct: 62 VEVSRVAEARSRAGDTFAMTIVASSTSSDAMTLVIDAPAIAIMVCTLFGGDPETPASPIE 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E ++ Q++ LN S + L + + + L + I Sbjct: 122 RDLSQIEVDVSTMLFQQVAQALN--GSGRRSLDLRLPVPRAMSGTEAKRHVLRDGAALRI 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + ++ + + + +PQ +L + + S+ + F+ + + V ++ Sbjct: 180 VLGISTPADSGTVTVTMPQRIVLASRDSAASTAGDDHG--PSWRERFSEEVMRSTVALEA 237 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + L + TL D+ +L++GQVI F ++ A LSA G+ ++ CE G++G+NYT+RI Sbjct: 238 TMPLARLTLGDLASLEVGQVIDFDETAQSRARLSARGQTLFVCEFGKLGQNYTVRIRHPF 297 Query: 305 NFDQKSLKNFL 315 + Q + + Sbjct: 298 DAGQDFIDGLM 308 >gi|313672895|ref|YP_004051006.1| flagellar motor switch protein flim [Calditerrivibrio nitroreducens DSM 19672] gi|312939651|gb|ADR18843.1| flagellar motor switch protein FliM [Calditerrivibrio nitroreducens DSM 19672] Length = 342 Score = 185 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 100/304 (32%), Gaps = 12/304 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K S R+ K + +L + + + D++ S Sbjct: 36 KKISVYDFRRPDRV------SKEQIRSIRNLHDKFARNFSSSLSNFLRTITDVNLVSVDQ 89 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S + F+ S+ + + + +LV +++ LLG + ++ R L Sbjct: 90 MTYGEFLMSLPDPTNFNIISMIPLDGSAVLEINPSLVFPIVDKLLGGPGLPMYKV--REL 147 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + +E+ + + I + L + + + NE V + Sbjct: 148 TALEQHIMESVIYLLLKELEDTWKQVIP-NIKFRKEITENSPQVVQIVAQNEVVVLVVFE 206 Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +V+ L +P L + + D +D + + + Sbjct: 207 VKFADVSGMINLCLPAVVLEPILGKISSQDWLVGAKKVKGLDYLDRILDILMEAYLPLKL 266 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I T+ D++ L G I F H+ + +L N + ++ E+G +G I + + Sbjct: 267 EIGPTILTVGDILELVEGDTIVFEHKAEEDVVLKVNNLDKFATEMGVIGVKKGALIKNIL 326 Query: 305 NFDQ 308 + Sbjct: 327 EESE 330 >gi|90415345|ref|ZP_01223279.1| flagellar motor switch protein FliM [marine gamma proteobacterium HTCC2207] gi|90332668|gb|EAS47838.1| flagellar motor switch protein FliM [marine gamma proteobacterium HTCC2207] Length = 330 Score = 185 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 33/296 (11%), Positives = 81/296 (27%), Gaps = 9/296 (3%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + LT + + + + E + + + KF + Sbjct: 37 AMRHDLTNEDSSLGVNIGAVDMINERFIRQFRLGLLEVLRTTPKVGMGDVKIMKFGEYLR 96 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ-LYNRSLSTVEKKL 134 + L+ ++V L+N G + R + E + Sbjct: 97 DLSAPLSVNTIRLNPLRGYSMAVIEPSIVFAALDNFFGGFGRGFDKLPPGRLFTPTETSI 156 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NV 193 K + + L + + + E + N+ V + N+ Sbjct: 157 IKIMLDVLFGSLKEAWAPILAINC--EHVNSEINPQFAQIADENDLVVVSRFGADLGRNI 214 Query: 194 ASSFVLIIPQETLLKTTLISLSSQ---NKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 + + L+ P +L + S + + ++ + + + + Sbjct: 215 SGNIDLVYPYNSLKPIRDLLRSRVQTGDGDDISDKEWSAELQSAAVDAELEVTVELGEIE 274 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 TTL + G ++ F A + N ++ ++G G RI + Sbjct: 275 TTLSKFEAMSEGDIVYFSK--SEHARVYVNSVPVFDADVGANGSQMAARIIKPLAP 328 >gi|333004050|gb|EGK23584.1| flagellar motor switch protein FliM [Shigella flexneri K-272] gi|333017823|gb|EGK37130.1| flagellar motor switch protein FliM [Shigella flexneri K-227] Length = 268 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 27/246 (10%), Positives = 71/246 (28%), Gaps = 8/246 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + + + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + + ++ + S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLK 249 Sbjct: 263 ANFADI 268 >gi|213028082|ref|ZP_03342529.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 247 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 72/241 (29%), Gaps = 8/241 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + P P R+ + + + + + + DI+ Sbjct: 14 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 67 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 68 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 127 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R + E+++ R + + + N N+ V Sbjct: 128 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 186 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241 ++ I N+ F + +P + + ++ + S ++ ++ D R+ + Sbjct: 187 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 246 Query: 242 I 242 + Sbjct: 247 L 247 >gi|163758006|ref|ZP_02165094.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica DFL-43] gi|162284295|gb|EDQ34578.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica DFL-43] Length = 315 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 125/308 (40%), Gaps = 2/308 (0%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + +T P LL R+ G GD IE SL L + F+ ++ + Sbjct: 4 SAKDSKTDTYEFDPELLDRMIGAKGDAAVIEAKCHSLQSAMCGPLERAFEMATNVHLSAR 63 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 Q G ++ F ++ VF + WS + C LVI ++E LLG S Sbjct: 64 PGEIQQGSRRQLLSVFGQDAVFCDTWIEGWSRDISALCGTKLVIAMVECLLGGSDPEELD 123 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R LS +E ++ Q++ L + S + +D + + + Sbjct: 124 IAARPLSGIELDMSLVVFEQLNDTLREVASKDPTAKAGAGKP-MLDIPEAEDDPKPDFHA 182 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 I + + +V + LI+PQ LLKT I S +N +D + + + +N Sbjct: 183 AAITLELQFGSVVTPLTLILPQSILLKTKPI-TSKKNAPNAVDDDWAERLNARVSRSQIN 241 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + L + ++ L++G +I F LSANGK +Y+C LG+ G Y +++ Sbjct: 242 LQAAVALAPLPVGEISRLQVGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVKVE 301 Query: 302 DRINFDQK 309 D+ Sbjct: 302 GDAGPDEN 309 >gi|319790436|ref|YP_004152069.1| flagellar motor switch protein FliM [Thermovibrio ammonificans HB-1] gi|317114938|gb|ADU97428.1| flagellar motor switch protein FliM [Thermovibrio ammonificans HB-1] Length = 347 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 10/302 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + P + + L + K + + + +S Sbjct: 22 EESKPEVVPFDFSQVEHIKKGG------VPGLELLIERWVKIYREDVRRLVPQVGMVSKE 75 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S +F++ + ++ S+ + NF + LV ++ + G ++ Sbjct: 76 SVYITRFNNFLAKIPMPASYTIVSMKPFKENFLFVLDSRLVFVVISVMFGG-PAKPFKIE 134 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R + +E ++ + + Q + +E NE V Sbjct: 135 GREFTKLEMRIIQDIVKIALEDFEQVWKEVYPIT--VEMKSIELNPALARIVSGNEKVIV 192 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + +M IE + F P + + S ++ + I K + N+ + Sbjct: 193 VECSMDIEGYEAPFFFCFPYGMFMPIKDLIFS-ESLFAEKDPVWIRHLGEKLLKTNLRVW 251 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + KK ++K+V++ K G + + L + +LG+V Y + D Sbjct: 252 LELTRKKFSVKEVLSWKEGDKLQLDVSKGDLLKLYVEESPKFYAKLGKVKDRYAALVYDF 311 Query: 304 IN 305 IN Sbjct: 312 IN 313 >gi|117928062|ref|YP_872613.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus 11B] gi|117648525|gb|ABK52627.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus 11B] Length = 314 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 33/302 (10%), Positives = 89/302 (29%), Gaps = 8/302 (2%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 G H + P R + + + + + + + + Sbjct: 11 TGPRTHARSREPKPYDFRR---PNKLNRAHVRTLHIAYETFCRQFTTVLTSTLGVFSLVE 67 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + S + SL + + ++ +LG Q Sbjct: 68 LVAVEQMSYVDYVESLPTPTFLALISLDPLQGTGILQLPLETAMLCVDRVLGGPGS--AQ 125 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 R + VE ++ K + L + SP++ + + ++ V Sbjct: 126 QPTRLPTDVETEIMKMVTRRAVQELRYAFEGLVQVSPDVIGIET--NPQFAQAAVPSDIV 183 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240 ++ + + + + L+IP L + S + + E + + + Sbjct: 184 VVASLEIKVGDQDGAATLMIPFTGLYPVLEAAASPKRGDRRDLLERSQAALRARLEDVEI 243 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T +++ L +G V+ H +++A G G G+ + Sbjct: 244 EVAVQFPYVALTPHELLNLSVGDVLSLRHPTNAPLLITAEGIPFAYAVPGSNGRQAACLV 303 Query: 301 TD 302 + Sbjct: 304 VE 305 >gi|237755434|ref|ZP_04584059.1| flagellar motor switch protein FliM [Sulfurihydrogenibium yellowstonense SS-5] gi|237692398|gb|EEP61381.1| flagellar motor switch protein FliM [Sulfurihydrogenibium yellowstonense SS-5] Length = 322 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 36/299 (12%), Positives = 92/299 (30%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 P L ++ L + K + + + + +S + Sbjct: 28 KEKPFDFSRLEKIQKGGFQ------GLEVLFEKWVKIFREEIRAEFPVVNMVSKGKIATM 81 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F I ++ ++ + + +V L+ L G ++ R + Sbjct: 82 RFGDFIGKIPLPASYTIFNMKPLKDPSLLIIDSRVVFNLVSALFGG-GARPFKIEGREFT 140 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++ ++ + + + +E E V + + Sbjct: 141 KLEIRIIEKLVDIVLGSFEKIWKDIYPIE--IERKSIEFNPILVRIVSHAEKVIVAEIMI 198 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 IE + PQ L I + S S + +K ++N+N+ ++ Sbjct: 199 DIEGLEVPLTFTFPQMLFLPIKDILFTDTFGS-EVSPEWRKELIKKLLKVNLNLTLELDK 257 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +++ + ++G I ++ L K + +G++ K + IT I + Sbjct: 258 FSVLVEEFLNYEVGTEIILNKKQSEELDLKVEDKVKFKASIGKLDKKFAAMITKIIKEN 316 >gi|296531735|ref|ZP_06894561.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] gi|296267934|gb|EFH13735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] Length = 353 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 3/291 (1%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 P + + + + + ++ + D+ + + + Sbjct: 50 PKRGLEALVGGAVRYEKLPMLDIVVDRLARLMTSSSRKFTADNADVVIDRTRPVRVGAFL 109 Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + + + W + L+ ++++ LLG + + R + +E+ Sbjct: 110 DTVTLPALIGIIRIEEWDGYCLAALDSRLIGSIVDILLGGRRNALQPIEGRPYTPIERTF 169 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 ++ ++ ++ L++ +S LE F T +T+E Sbjct: 170 VEKFVSVVTNDLSRAFEAVSPASFRLERFE--ITPSYALITKPTAAALTFRAEITMEGRG 227 Query: 195 SSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 +IP +L + K A + + +V + I + Sbjct: 228 GFIDFLIPYASLEPVRDLLSQEVLGKKSGGDTIWRSHLAEELPRASVELTAVIESRTVPF 287 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 +V + + G V R++ + G + L + +R+ D + Sbjct: 288 SEVASWQPGSVFVLDKRQEDPVDVFCQGLMVCRATLATKDERVVLRVEDCV 338 >gi|225850288|ref|YP_002730522.1| flagellar motor switch protein FliM [Persephonella marina EX-H1] gi|225646133|gb|ACO04319.1| flagellar motor switch protein FliM [Persephonella marina EX-H1] Length = 323 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 36/297 (12%), Positives = 92/297 (30%), Gaps = 11/297 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + +P + + + + K ++ + + Sbjct: 28 SDIAPFDFSEVEHIKKGG------LPGLEMIFERWIKIYRDDVRKITPRINMVWRENIYI 81 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 +F+ + ++ ++ N + + LV T++ L G ++ R Sbjct: 82 TRFNTFMLKIPLPSSYNIFTIRPLKENALLIIDSRLVFTIISVLFGG-PAKPFKVEGREF 140 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + +E K+ + + ++ +E NE V + Sbjct: 141 TKLETKIVEDLVNSALKSFESVWNSIYPV--VIELRSIELNPNLAKIVSPNEKVVVVECR 198 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 M I+ + F PQ L I + + ++ K +LN+ + I Sbjct: 199 MDIDGYEAPFYFCFPQSMFLPIKEIIYTQVS--VSEDPIWKKNLDEKIRKLNLKLTMEIA 256 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + ++D+++ K G + + L + ++ +LG+V Y I + + Sbjct: 257 KLQFKIRDILSWKEGSELDLGVTKDDIFRLYVEDRHKFNVKLGKVNNKYAAMIVEPV 313 >gi|89068711|ref|ZP_01156097.1| possible flagellar motor switch protein FliM [Oceanicola granulosus HTCC2516] gi|89045674|gb|EAR51736.1| possible flagellar motor switch protein FliM [Oceanicola granulosus HTCC2516] Length = 316 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 6/297 (2%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 + ++ + + Y L K + D++ S + Sbjct: 15 VEEQIIRLSSLNFERMPMLEVVFDRYVMALASAMKSFSGMPFDVTLRSFDYVTCGTALSG 74 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLA 135 + + + + WS N + S +L+ ++LE +LG RS + +E++ Sbjct: 75 LPAPSLSALTTATPWSGNVLMTLSPDLLFSVLEVMLGGREGRGRQLWKPRSFTAIERRFG 134 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 R I +Q E S ++ + S + +++T+ Sbjct: 135 GRLARMILDEFSQSFRQLSEVSFEIDSLESA--PETIAIAPSGSPAVWVTLDLTVGERGG 192 Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 + +IP L + K V + ++ + ++ Sbjct: 193 ALYFLIPYTALDTVRPVLNQPFLGGKIGGDTSWRKDLEEKIEDTTVTLTASLHRLRVPVQ 252 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG-KNYTIR-ITDRINFDQK 309 + + + GQ I + + + ++ ++GR +R I + + Sbjct: 253 EALGWRKGQTIDLGISAEQPVDVVCGERRMFRGQMGRRATGQVALRLIEEDTGTEAD 309 >gi|68164513|gb|AAY87242.1| predicted flagellar motor switch protein [uncultured bacterium BAC17H8] Length = 321 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 35/307 (11%), Positives = 96/307 (31%), Gaps = 9/307 (2%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDVDI 60 G + + + + D + + + + +F + + I Sbjct: 20 GAETNAPSGIMDGDEVRPFQFGSDDLSLLGDYHALRIINERFARLARSVFLPMLRIQPRI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + F + + + + N + N + L + G +P Sbjct: 80 SSFPPEVKTFDEYTAGIENFMSLNISRIEELRGNMLSVMTPNFISVLTNSYYGGKITALP 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + + E+++ + ++ L + + + EF Sbjct: 140 SKKS-EFTATEERIIELVTDGLNETLQVAWRDLMPIK--ITYQNREINPQFASFVDGAEF 196 Query: 181 VTTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQL 238 V + + + + A+SF +I P +TL S Q + + R + Sbjct: 197 VIICSFVVQLPDTDAASFDIIYPLQTLKPIAAQLRSRLQADVAEDNHTWREKMERAVLNI 256 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + R+ ++ +++ +++G P + + ++ + +LG VG N + Sbjct: 257 PLPVTARLGQPVVSMYNLINMQVGDTFPI--TIGEGVEVRIDTEDAFIGDLGDVGGNAAV 314 Query: 299 RITDRIN 305 + R+ Sbjct: 315 NLKSRLK 321 >gi|221639474|ref|YP_002525736.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|221160255|gb|ACM01235.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] Length = 323 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 7/273 (2%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + + + +F + L IS + F S + + + Sbjct: 53 ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 N I + L ++ G +P + E+++ + +++ L Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDL 171 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212 + + + ++ + + V + + + N +SF ++ P +TL + Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229 Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S Q+ + + R + + + R+ + L+ ++ ++ G V+P Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L G+ I+ G G + +T R Sbjct: 289 -EAVSLLVEGQPIFEAAPGERGGQAALNLTRRH 320 >gi|77463631|ref|YP_353135.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1] gi|126462463|ref|YP_001043577.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] gi|77388049|gb|ABA79234.1| Flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1] gi|126104127|gb|ABN76805.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] Length = 323 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 7/273 (2%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + + + +F + L IS + F S + + + Sbjct: 53 ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 N I + L ++ G +P + E+++ + +++ L Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDL 171 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212 + + + ++ + + V + + + N +SF ++ P +TL + Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229 Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S Q+ + + R + + + R+ + L+ ++ ++ G V+P Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L G+ I+ G G + +T R Sbjct: 289 -EAVSLLVEGQPIFEAAPGERGGQAALNLTRRH 320 >gi|157736463|ref|YP_001489146.1| flagellar motor switch protein FliM [Arcobacter butzleri RM4018] gi|157698317|gb|ABV66477.1| flagellar motor switch protein FliM [Arcobacter butzleri RM4018] Length = 368 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 105/317 (33%), Gaps = 11/317 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + KN S R+T K +++ + + VDI T+ Sbjct: 34 AKEKNYSIYDFKKPNRVTLDQ------LKALTTMHDKMLREFINDLSSMLRKIVDIKLTT 87 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + I S + S S+ I C+ + ++ +LLG+ + Sbjct: 88 IEQMTYGEFILSIPQVTSLSTLSMKPLDGRIVIECNPTISHKVIADLLGSGAVNTMDNLD 147 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R L+ +E K+ + +L + S + +E ++ V + Sbjct: 148 RELTEIEIKVLEHFYKMFIKILYKTWSDISSLNFRIESSDTNAN--AIQIVSDHDIVLLV 205 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243 +TI+ + + P + ++ +N+ + + ++ Sbjct: 206 VFEITIDEDSGFLSICYPISYIEPLLNKIVDKIFSEGKNKKLSRKEDIKTLISGARMKVE 265 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + T +++ LK +I F + A + N KE +S G ++I Sbjct: 266 AIMAETELTTAEILNLKENDIIVFNKNASSSSATVYINKKEKFSAVSGISNNRKAVQIKA 325 Query: 303 RINFD-QKSLKNFLHKR 318 ++ + Q++L R Sbjct: 326 NLDREKQETLDTLREMR 342 >gi|315635624|ref|ZP_07890887.1| flagellar motor switch protein FliM [Arcobacter butzleri JV22] gi|315479921|gb|EFU70591.1| flagellar motor switch protein FliM [Arcobacter butzleri JV22] Length = 368 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 105/317 (33%), Gaps = 11/317 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + KN S R+T K +++ + + VDI T+ Sbjct: 34 AKEKNYSIYDFKKPNRVTLDQ------LKALTTMHDKMLREFINDLSSMLRKIVDIKLTT 87 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + I S + S S+ I C+ + ++ +LLG+ + Sbjct: 88 IEQMTYGEFILSIPQVTSLSTLSMKPLDGKIVIECNPTISHKVIADLLGSGAVNTMDNLD 147 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R L+ +E K+ + +L + S + +E ++ V + Sbjct: 148 RELTEIEIKVLEHFYKMFIKILYKTWSDISSLNFRIESSDTNAN--AIQIVSDHDIVLLV 205 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243 +TI+ + + P + ++ +N+ + + ++ Sbjct: 206 VFEITIDEDSGFLSICYPISYIEPLLNKIVDKIFSEGKNKKLSRKEDIKTLISGARMKVE 265 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + T +++ LK +I F + A + N KE +S G ++I Sbjct: 266 AIMAETELTTAEILNLKENDIIVFNKNASSSSATIYVNKKEKFSAVSGISNNRKAVQIKA 325 Query: 303 RINFD-QKSLKNFLHKR 318 ++ + Q++L R Sbjct: 326 NLDREKQETLDTLREMR 342 >gi|332558487|ref|ZP_08412809.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides WS8N] gi|3435105|gb|AAC32319.1| flagellar switch protein [Rhodobacter sphaeroides] gi|332276199|gb|EGJ21514.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides WS8N] Length = 323 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 7/273 (2%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + + + +F + L IS + F S + + + Sbjct: 53 ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 N I + L ++ G +P + E+++ + +++ L Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDL 171 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212 + + + ++ + + V + + + N +SF ++ P +TL + Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229 Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S Q+ + + R + + + R+ + L+ ++ ++ G V+P Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L G+ I+ G G + +T R Sbjct: 289 -EALSLLVEGQPIFEAAPGERGGQAALNLTRRH 320 >gi|2315249|emb|CAA74715.1| flagellar switch protein [Rhodobacter sphaeroides] Length = 323 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 88/273 (32%), Gaps = 7/273 (2%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + + + +F + L IS + F S + + + Sbjct: 53 ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 N I + L ++ G +P + E++ + +++ L Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERCIELVTDRLNVALQVAWRDL 171 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212 + + + ++ + + V + + + N +SF ++ P +TL + Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229 Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S Q+ + + R + + + R+ + L+ ++ ++ G V+P Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L G+ I+ G G + +T R Sbjct: 289 -EALSLLVEGQPIFEAAPGERGGQAALNLTRRH 320 >gi|117926842|ref|YP_867459.1| flagellar motor switch protein FliM [Magnetococcus sp. MC-1] gi|117610598|gb|ABK46053.1| flagellar motor switch protein FliM [Magnetococcus sp. MC-1] Length = 332 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 94/309 (30%), Gaps = 11/309 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 K T+P K + + L +K+ +V + Sbjct: 33 SASKDEKKTTPFT------FGQKTAIRVGALPGLDLINEHLASQLSFKLTQKVGREVHVQ 86 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + F +H+ + + + S I +++ T+LE G ++ + Sbjct: 87 PKTTTNQVFGRFLHTVEPPIFINILRVEPSQSMALISIDGDVMYTVLEGFFGGPGDS--E 144 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 R+ S E K+ R + + S L + + +E V Sbjct: 145 RPFRNFSPFEMKVIDRIMDVAREQIELSWKKLDP-SFRLVLARWENQPQFAAVMPLDETV 203 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS--EDLIDPFARKTYQLN 239 I ++ + + + + P L + E +D + + Sbjct: 204 FLITFSVEVGDAEGNITICFPAVILELFKQQLKQGFQQKEEVEGASAWMDALKNELSLVR 263 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V++ + + +++ ++ LK+G + G + + C G V IR Sbjct: 264 VDMTPVMGTVEMSVEQMLNLKVGDEFILGTDMSEEMAVQIGGMDKFMCHAGVVDGKRAIR 323 Query: 300 ITDRINFDQ 308 IT + + Sbjct: 324 ITRTVQPQK 332 >gi|260466628|ref|ZP_05812816.1| surface presentation of antigens (SPOA) protein [Mesorhizobium opportunistum WSM2075] gi|259029634|gb|EEW30922.1| surface presentation of antigens (SPOA) protein [Mesorhizobium opportunistum WSM2075] Length = 315 Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 122/311 (39%), Gaps = 9/311 (2%) Query: 10 TSPLHPI-----LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TSP P ++ RL G G+ + ++ L K + + V + + Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEADQVIDAGRAMAERAVPLLQKGLSSGLGVPVIVDLKA 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + +NF + + S + + ++ L G + Sbjct: 62 VEVSRVTEARSRAGDNFAMTVVGSPASSDAMTLVIDAAAIAIMVSTLFGGDPDMPVSPIE 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E ++ +++ LN S + L + ++ + L + I Sbjct: 122 RDLSPLEADVSTMVFQEVAQALN--GSGQRSLELRLPAPRAMSGIEARRHVLRDGAAIRI 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + ++ + S +++PQ +L S+ S F+ + + V ++ Sbjct: 180 VLGISTPVDSGSITVMMPQRIVLAGRDGIASASEADPGTS--WRARFSEEVMRSTVALEA 237 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + L + TL D+ L++GQVI F ++ A L A G+ ++ CE G++G+NYT+RI Sbjct: 238 TMPLARLTLGDLAKLEVGQVIDFEETAQSRARLGARGQTLFVCEFGKLGQNYTVRIRHPF 297 Query: 305 NFDQKSLKNFL 315 + Q + + Sbjct: 298 DAGQDFIDGLM 308 >gi|146277687|ref|YP_001167846.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] gi|145555928|gb|ABP70541.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] Length = 323 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + + + +F + L IS + F S + + + Sbjct: 53 ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 N I + L ++ G IP + E+++ + +++ L Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHIPTTRT-EFTATEQRVIELVTDRLNVALQVAWRDL 171 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212 + + ++ + + V + + + N +SF ++ P +TL + Sbjct: 172 MAL--SFTVVSREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229 Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S Q+ + + R + + + R+ + L+ ++ ++ G V+P Sbjct: 230 LRSRMQSDFVDDDRTWREKLERAILSIPLTLSARLCEPEVPLRQLMQIQPGDVLPVQLT- 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L + I+ G G + +T R Sbjct: 289 -EAVSLLVENEPIFEGVPGERGGQAALNLTRR 319 >gi|152990356|ref|YP_001356078.1| flagellar motor switch protein FliM [Nitratiruptor sp. SB155-2] gi|151422217|dbj|BAF69721.1| flagellar motor switch protein FliM [Nitratiruptor sp. SB155-2] Length = 326 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 11/301 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + P L + + + K + ++ + +S S Sbjct: 33 SDIRPFDFDELESIKKGGF------PGLELIYERWVKLFREEVRKVLPKINMVSKESIYI 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 +F++ + + ++ ++ + + LV T++ + G ++ R Sbjct: 87 TRFNNFMFNIPMPSSYTTFTMRPLKETALLVIDSRLVFTVISVMFGG-PAKPFKVEGREF 145 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + +E + K I L + S +E NE V Sbjct: 146 TKLETYVIKDFIDIALESLQEVFSAVYPVD--VEKRSIELNPALARITSGNEKVIISECI 203 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + I+ + P L I S Q NV + + Sbjct: 204 VDIDGFEAPIYFCFPHGMFLPIKEIIYS--EFQGEIDPVWKRRVNEILLQTNVEVALELP 261 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + ++DV+ K G + ++ A L + K + C++G++ + Y + + + Sbjct: 262 KQTYLMRDVLQWKEGMELILDIEKEEDAYLRISDKYKFRCKVGKIKEKYAALLKNEHQEE 321 Query: 308 Q 308 + Sbjct: 322 E 322 >gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 325 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 89/273 (32%), Gaps = 7/273 (2%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + + +F +F + + IS + F + + + Sbjct: 56 ALRMINERFARFARSVFLPMLRVQPRISSFPPEVKSFDEYAAGIDSFMSLNISRIEELRG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 + S + + L + G E + + E+++ + ++ L Sbjct: 116 SMLTVLSPSFISVLTNSYYGGKIEG-NKSRRPEFTATEERVIQLINRGLNETLENSWRDL 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLI 212 E + L + + + V + + + ++ A+SF +I P +TL Sbjct: 175 MEIT--LSHQSSEVNTQFASFVDGADLVIICSFVVQLPDIDAASFDVIYPLQTLKPIAAQ 232 Query: 213 SLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S Q+ + D R + + + +++ ++ ++ LK G V P Sbjct: 233 LRSRVQSDRIEDDQSWRDRMERAVLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPIQ--I 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + Y E+G VG I +T RI Sbjct: 291 GDGVEVLMDEHRFYYGEMGEVGGQSAINLTSRI 323 >gi|291562030|emb|CBL40846.1| Flagellar motor switch protein [butyrate-producing bacterium SS3/4] Length = 363 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 52/318 (16%), Positives = 112/318 (35%), Gaps = 14/318 (4%) Query: 3 GQSIHKNTSPLHPI----LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58 + ++ PL P + K KI S+ Y + L + Sbjct: 24 QEKKTESVQPLSPEEKNYIKYDFFSPRKFTKEKMKILRSVFENYARILTSQINGIFRVMT 83 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLG 113 DI+ Q ++ +++ EN + S + + +VITL+ ++LG Sbjct: 84 DITVLDVQERRYYEYVNALHENDCMTMIDASIAGEEKMSVPLMLFVTPGMVITLINHMLG 143 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 + R S VE+ L KR + ++ L S + ++E + + Sbjct: 144 GEDVVAVEDDYR-YSDVERALYKRIVEYMTGALKDGFSNYVSIAFSVE--HVEENPTMVQ 200 Query: 174 NRLSNEFVTTINMNMTIENVASS-FVLIIPQETLLKTTLISLSSQNKSEN-QSEDLIDPF 231 + +E V I +N+ I A + +P L + ++ + +D + Sbjct: 201 DVGLDETVAIIILNVDISGQAQEKVKICLPGNLLTVIFHSIDNRKHLARGFSYQDNKEKI 260 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + I ++ + LK + +++G VI + + L + ++ ++G Sbjct: 261 MDNIRYSKLPITGQLGTVQLDLKGLYQIQVGDVIDLGKPKDSPVRLFVGRQPWFTGQMGC 320 Query: 292 VGKNYTIRITDRINFDQK 309 KN ++I I + Sbjct: 321 YKKNVAVKIEKCIASQIE 338 >gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] Length = 315 Score = 175 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 93/295 (31%), Gaps = 4/295 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 L + + + + L K + +I TS + + + Sbjct: 11 SLEETMIRQARESFQRLPTLEIIIDRLLLALVPDLKSYCTIAPEIELTSLEYMPYEDAME 70 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 S + + + A+ W S +L+ ++LE +LG T + R L+ +E+KL Sbjct: 71 SIQSPSLIAIANAEGWGSQIACVVEPDLLFSVLEIMLGGRRATTQEWKPRGLTAIEQKLG 130 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 +R L QC+ + + + M+M E+ + Sbjct: 131 RRLAELSLKGLAQCLQDVSPVQ--FDIQSLESNPRSVMLAAPRTATVLVRMHMQFEDRSG 188 Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 L++P TL + + + + V I + L Sbjct: 189 HMALVLPYGTLDEVSAQLAQPFLGGRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLH 248 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR-VGKNYTIRITDRINFDQ 308 +V+ K GQVI T + N + ++ G+ +R+ + + Sbjct: 249 EVLEWKTGQVIDLGMTVDTPVVGMVNAQPMFQAAFGQRSNGALALRVIQSLLPKE 303 >gi|325295396|ref|YP_004281910.1| flagellar motor switch protein FliM [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065844|gb|ADY73851.1| flagellar motor switch protein FliM [Desulfurobacterium thermolithotrophum DSM 11699] Length = 348 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 39/308 (12%), Positives = 93/308 (30%), Gaps = 12/308 (3%) Query: 2 RGQSIHKN--TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 S + +P L+ + L + K + + + Sbjct: 20 NSSSEEQKLEVAPFDFSLVEHIKKGG------VPGLELLLERWIKIYSEEIRRLVPQINM 73 Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 ++ S +F++ + +S S+ NF + + LV ++ + G Sbjct: 74 VTKESVYITRFNNFMSKIPLPASYSIVSMKPLKDNFLLVLDSRLVFVVISVMFGG-PAQP 132 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ R + +E ++ + + L+ N+ Sbjct: 133 FKIEGREFTKLETRIIDDIVKISLSTFQHTWKDVYPVEFELKSIEL--NPALARIVSGND 190 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 V + M ++ + F PQ L + S + +K + Sbjct: 191 RVIVVECTMDVDGYEAPFFFCFPQGMFLPIKELIFSEA-VFAEKDPVWEKHLTKKLLKTE 249 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K L+++++ K G I + L K + +LG++ Y Sbjct: 250 LKLTLELTRKNFFLRELLSWKEGDEILLDISKDEFVKLYVEDKPKFWAKLGKIKDKYAAL 309 Query: 300 ITDRINFD 307 + D IN + Sbjct: 310 VVDMINGE 317 >gi|319781690|ref|YP_004141166.1| surface presentation of antigens (SPOA) protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167578|gb|ADV11116.1| surface presentation of antigens (SPOA) protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 315 Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 115/300 (38%), Gaps = 4/300 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +++ RL G G+ + ++ L K + + V + + + + Sbjct: 13 LIIERLVGDSGEAAQVIDAGRAMAERAVPLLQKTLTSEFGVPVVVDLKAIEVSRVPEARS 72 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + F + S+ S + + ++ L G + R LS +E ++ Sbjct: 73 RAGDTFAMTVIGSSASSDAMTLVIDAPAIAIMVCTLFGGDPDLPASPIERDLSQIEIDVS 132 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 Q++ LN S + L + + L + I + ++ + Sbjct: 133 TMVFQQVAQALN--GSGKRSLDLRLPAPRAMSGTEAKRYVLRDGAAIRIVLGISTPADSG 190 Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 + + +PQ +L + ++ + F+ + + V ++ + L + TL D Sbjct: 191 TVTVTMPQRVVLASRDGAVPVSDDDHG--PSWRARFSEEVMRSTVALEATMPLARLTLGD 248 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + +IG VI F ++ A LSA GK ++ CE G++G+NYT+RI + Q + + Sbjct: 249 LAGFEIGDVIEFEETAQSQARLSARGKTLFVCEFGKLGQNYTVRIRQPYDAGQDFIDGLM 308 >gi|188997560|ref|YP_001931811.1| flagellar motor switch protein FliM [Sulfurihydrogenibium sp. YO3AOP1] gi|188932627|gb|ACD67257.1| flagellar motor switch protein FliM [Sulfurihydrogenibium sp. YO3AOP1] Length = 322 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 87/275 (31%), Gaps = 4/275 (1%) Query: 35 SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94 L + K + + + + +S + +F I ++ ++ + Sbjct: 48 LEVLFEKWVKIFREEIRTEFPVVNMVSKGKIVTMRFGDFIGKIPLPASYTIFNMKPLKDS 107 Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + +V L+ L G ++ R + +E ++ ++ + + + Sbjct: 108 SLLIIDSRVVFNLVSALFGG-GARPFKIEGREFTKLEIRIIEKLVDIVLGSFEKIWKDVY 166 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214 +E E V + + IE + PQ L I Sbjct: 167 PIE--IERKSIEFNPILVRIVSHAEKVIVAEIMIDIEGLEVPLTFAFPQMLFLPIKDILF 224 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + S S + +K ++N+ + ++ +K+ + +G I ++ Sbjct: 225 TDTFGS-EVSPEWRKELIKKLLKVNLKLILELDKFSVLVKEFLNYDVGTEIILNKKQSEE 283 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L K + LG++ K + IT I + Sbjct: 284 LDLKVEDKVKFKASLGKLDKKFAAMITKVIKENDD 318 >gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus DSM 13965] gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus DSM 13965] Length = 321 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 31/299 (10%), Positives = 89/299 (29%), Gaps = 6/299 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M K + L K + + + + ++ V++ Sbjct: 1 MNQGVRRKGVRRAPVVRLYDFRRPDKFSKEQLRTLAMVHENVARLATGFLSGQLRTVVEV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + I V + +L S+ + ++ +++ L Sbjct: 61 AVLEVEETTYGEFITGLSNPTVLAVFNLPPLESSAVMDVEPSIAFPMVDRLF--GGPGTG 118 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R L+ +E + + + + + + S + L + NE Sbjct: 119 AATGRGLTEIETVVMRAILQGLLGSVAEGWSQLVQVQGELVT--VAANPLFVQVQAPNEI 176 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQL 238 V + +++ ++ + +P L Q + + + Q+ Sbjct: 177 VVRVVLSVRFGQQEGAWRICLPYPLLEPLLPRLAVHQYYARETRSQARSREQWEEGLRQV 236 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + + + T++ ++ L G V+P R + + G+ + G+ G+ Sbjct: 237 PLPVQVVLGRAQLTVRQLLDLAPGHVLPLDTRAGSLVDILVGGRLKFRGLPGQHGQRLA 295 >gi|239628949|ref|ZP_04671980.1| flagellar motor switch protein FliM [Clostridiales bacterium 1_7_47_FAA] gi|239519095|gb|EEQ58961.1| flagellar motor switch protein FliM [Clostridiales bacterium 1_7_47FAA] Length = 296 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 96/286 (33%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K +L + + L + +IS ++ +S ++ +F +L Sbjct: 15 KERMSTVENLYDSFARALAPYLTGLLQSYCEISINGIVEKRYQEFSNSVPDHSLFGMITL 74 Query: 89 SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 S + + L ++E LLG R + +EK + + + +I+ Sbjct: 75 SPANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEYELT--RDFTDIEKAILQYVLGKIT 132 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 L + + +L + V + + + I+ +++ +++P Sbjct: 133 EFLGEAWGQYLDVQASLTGLQT--NPHLLQMSAQEDVVIQVELEVVIDKLSARLNMVMPA 190 Query: 204 ETLLKTTLI-----SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 + + T + S + + E + + + + V + ++ +D++ Sbjct: 191 PNVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLESEVELRAILHEFTLDAQDILQ 250 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L G VIP + + + + + G + I++ + Sbjct: 251 LTPGDVIPLNKKVDSGISIYVEDVACFEAKAGHTRLRKAVEISNEL 296 >gi|91200230|emb|CAJ73274.1| similar to flagellar motor switch [Candidatus Kuenenia stuttgartiensis] Length = 318 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 14/300 (4%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q + K R + ++ + + F + + V + Sbjct: 31 QKVVKKVQHYDFRRPDRF------PREQKRQLQKISENMAVNMGLTFSQYVRTTVGVELI 84 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + + + ++SF + S L+ + + + +++ LG + ++ Sbjct: 85 AIEEFSYELFLNSFTDLVCASVVDLTPYRGKGCLTLDAGFCLAMIDRGLGGPGKIQQKI- 143 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183 R L+ +E+ + + ++ + + C + E + L+ + E + Sbjct: 144 -RPLTIIEESVVSQVLSNVLHSMCLCWNDVAEIEWQIAKTDM--DLRSLQVAHNTESMIA 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 IN ++ E + V +P TL ++ E+ I + Q+ + ++ Sbjct: 201 INFAISGELGTGTLVFCLPVATLEAVMGKI----TEATLNREEEIVIIKQTLNQVPLLVN 256 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 T + + + +++ L++G VI ++ L + + G GK I+IT Sbjct: 257 TILGTTQLSFNELINLRVGDVISLDNKITDHLSLEIDEVPKFFGTPGVSGKKLAIKITSV 316 >gi|149200770|ref|ZP_01877745.1| Flagellar switch protein FliM [Roseovarius sp. TM1035] gi|149145103|gb|EDM33129.1| Flagellar switch protein FliM [Roseovarius sp. TM1035] Length = 325 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 83/274 (30%), Gaps = 7/274 (2%) Query: 35 SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94 + + + +F + + IS + FSH + + A + + SN Sbjct: 57 LRMVNERFCRLARPVFLPFLRMHPRISAFPPEVKSFSHYCDELENFVSLTTARVDALRSN 116 Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 I N V L G + +P + E ++ + I L Sbjct: 117 QLIMLPPNFVSLLTNAYYGGNIAYLPG-GRAEFTASETRVIEIVTKGIYRALEAAWRDLI 175 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLIS 213 + D L+ T S E V + + + ++ LI P + L Sbjct: 176 PLD--FANPVHEDNLQFATFVESEEKVVCCSFIIQLPEADPATLDLIYPLQALKPIAARL 233 Query: 214 LS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 S Q+ + +N+ R+ + + L+ G+V+P + Sbjct: 234 RSRMQSDQVADDLRWRSRLREAVMAVPLNVTARLAEPNVPISALTGLRPGRVVPVDLTLR 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L G ++ E G + +T RI Sbjct: 294 P--QLLVEGTPLFDAEPGAQNGRAALSLTRRIEP 325 >gi|296274406|ref|YP_003657037.1| flagellar motor switch protein FliM [Arcobacter nitrofigilis DSM 7299] gi|296098580|gb|ADG94530.1| flagellar motor switch protein FliM [Arcobacter nitrofigilis DSM 7299] Length = 364 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 50/320 (15%), Positives = 101/320 (31%), Gaps = 14/320 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S KN S R++ + K S+L + L + VDI S Sbjct: 33 SKEKNYSIYDFKKPNRISNEQF------KAFSTLHDKMLRDLITDLSAMLRKIVDIKLYS 86 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + I S + + S+ I C+ + ++ LLG+ + Sbjct: 87 IEQMTYGEFILSIPQLTSLNTLSIKPLDGRIVIECNPGISHKIIAELLGSGSVASTDNLD 146 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R L+ +E ++ I + L + + +E +E V + Sbjct: 147 RELTEIEVEIFDHFYKLIVSHLYKAWDEITTLNFKIE--SRDTNANAIQIISDHEIVLLV 204 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + TI+ + + P + + N+ +NI+ Sbjct: 205 VLEFTIDEESGFLSICYPISYIETLLNKIVTKIFAEGRNKKASRKKDITTLISGAKMNIE 264 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + +++ LK G VI F + L N KE + G ++I Sbjct: 265 AIMAETFLKTSEILDLKEGDVIVFNKNSTSATSKLYINKKEKFLAISGLSNNRKAVQIKA 324 Query: 303 RINFDQ----KSLKNFLHKR 318 I+ ++ ++L+ +R Sbjct: 325 NIDHEKMETLETLRGMREER 344 >gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827] gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827] Length = 320 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 94/303 (31%), Gaps = 9/303 (2%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 +P P + T + + + ++ + + + + + S + Sbjct: 22 ANPGDPEVFD-FTRPVKLPRELLRVLQLCYETFSHRMATLLTSTLRVVCHAELISIEQLS 80 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 ++ + + + L + + + +T +++LLG P R LS Sbjct: 81 YAEHMAELANPTLLAPVVLEPLPGTALLEMTLSTAMTSMDHLLGGKGGPQP---ARPLSD 137 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E L + + Q L + + + P LE + + V + Sbjct: 138 IETPLLRDLLDQALEQLRVGMESVADVRPELEGLEY--NPQLVQTSTPTDAVVVGYFELN 195 Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + L IP +T+L + + E + + V + + Sbjct: 196 VGEEQGQVSLCIPLQTILPSLRSYRDKVAVSASERATREAARNAITAGLQNVPVAVSVKF 255 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + D+V L+ G VIP HR + A G+ + + G + + Sbjct: 256 QSVRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFANAVATKRGTRLACLVVAGADS 315 Query: 307 DQK 309 ++ Sbjct: 316 EEN 318 >gi|254437125|ref|ZP_05050619.1| flagellar motor switch protein FliM [Octadecabacter antarcticus 307] gi|198252571|gb|EDY76885.1| flagellar motor switch protein FliM [Octadecabacter antarcticus 307] Length = 326 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 101/277 (36%), Gaps = 7/277 (2%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + + + +F+ + + I+ + F F + + ++ Sbjct: 52 ALRVINERFARLARTVFQPMLRVQPRITALPPEVKTFDEYCKEFPTLMCLTTSRINELRG 111 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 + + + TL G + ++ E ++ + +S L Sbjct: 112 SKMMVIQPEFISTLTNAYYGGVLGQKYKPST-EFTSTESRIIEIVTEGLSRNLLIAWQDL 170 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLI 212 + + E + L+ + E V + + + + F ++ P +TL Sbjct: 171 MPLTFSDE--SREENLQFASFVDGEETVIICSFTIELPQENKAKFDILYPLQTLKPIAAQ 228 Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S Q++ + + R ++ + ++ +++ + +L+ ++ ++ G V P R Sbjct: 229 LRSRMQSEVVDDDLTWRERLERAVTEVRLTVNVQLSKPRISLRQLIEVQKGDVYPIQLR- 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + +G+++++ ++G + I IT+++N +Q Sbjct: 288 -DGLSVLVHGQKMFAADIGEIAGFNAITITEKLNQNQ 323 >gi|284989543|ref|YP_003408097.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM 43160] gi|284062788|gb|ADB73726.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM 43160] Length = 321 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 27/280 (9%), Positives = 91/280 (32%), Gaps = 6/280 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 + ++ + + + + + + + + S + Sbjct: 27 DFRRPTKLSREHVRVLQIAQEAFARQTTTVLTTMLRAGARLELLGIEQHSYDDYVASLPD 86 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + ++ + + ++ + ++++LG S +R ++ +E + + Sbjct: 87 PCFLATFTIEPLAGKGVLAYPLDIAMAAVDHMLGGSGS--ADQPDRPMTVMETAITNHLL 144 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 ++ + L S E P L + + ++ V + + I + + L Sbjct: 145 GRLLSELAGSFSHIIELQPELSEIEY--NPQLAQAASGSDTVMVASYTIGIGSRSGEATL 202 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLI--DPFARKTYQLNVNIDTRINLKKTTLKDVV 257 ++P + + S Q Q++ + + Q+ V++ R + + +D++ Sbjct: 203 VLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLTQVPVDVGVRFAPLEVSSEDLL 262 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 +L +G V+ H + ++ N + Sbjct: 263 SLAVGDVLLLRHPQDAPLEVTTNEVTFAYAIASNHRRRLA 302 >gi|160939629|ref|ZP_02086977.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC BAA-613] gi|158437420|gb|EDP15184.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC BAA-613] Length = 296 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 95/286 (33%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K +L + + L + +I+ ++ S +++ +F ++ Sbjct: 15 KERMSTVENLYDSFARALAPYLTGLLQSFCEININGIVEKRYQEFSSSVQDHSLFGMITM 74 Query: 89 SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 S + + L ++E LLG +R + +EK + + + +I+ Sbjct: 75 SPANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEYD--LSRDFTDIEKAILQYVLKKIT 132 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 L + + +L + V + + + IE + + +++P Sbjct: 133 EFLGEAWGQYLDIEASLTGLQT--NPHLLQMSAQEDVVIQVELEVVIEKLRARINMVMPA 190 Query: 204 ETLLKTTLISL---SSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVT 258 + + T + +K +++ + + + V + ++ +D++ Sbjct: 191 PNVEELTSKFGYSFAVSHKKQDEDKQKSKRHYIEQHLLESEVELRAILHEFTLDAQDILQ 250 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L G VIP + + L + G+ + I+ + Sbjct: 251 LAPGDVIPLNKKVDSAVSLYVEDVACFEARAGQTKMRKAVEISREL 296 >gi|121602879|ref|YP_989408.1| flagellar motor switch protein FliM [Bartonella bacilliformis KC583] gi|120615056|gb|ABM45657.1| flagellar motor switch protein FliM [Bartonella bacilliformis KC583] Length = 323 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 113/316 (35%), Gaps = 7/316 (2%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 ++ K +L + G + L L+ I Sbjct: 13 TQENEEKKQ----DVLAQHILRAAGLSSDDLMSFQYIFRDAASHLCSQINHYTPLEFTID 68 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 S + K I + + + S W ++ + LV + E GA+ I Sbjct: 69 VVSLDTLKIDKITQTIGTDTLLIDFSSDRWGNDVIFVLDSVLVELITETFFGATEPKIIN 128 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 R S E +++ ++ ++ T +S + NT + Sbjct: 129 RNGRPFSPTECSISEHFGKLLANAMDSVFGTGDKSLLIFTQTRKAQ--EFNTETFHQSQM 186 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTL-ISLSSQNKSENQSEDLIDPFARKTYQLNV 240 + +++ + +++P+ I+ + + + ++ Q +V Sbjct: 187 FSCTLSIKCGEAEAHLNILMPRSCHRPIHEAITRALRAPEKRMDPLWTKRLRKEVSQAHV 246 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I+ + TL +++ LK+GQV+P L + K +Y C LG++GKN++IR+ Sbjct: 247 QIEAFMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRSGDKSLYKCSLGKIGKNFSIRV 306 Query: 301 TDRINFDQKSLKNFLH 316 TD I+ +++ + +H Sbjct: 307 TDPIDEEKEMINELVH 322 >gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268] gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268] Length = 395 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 104/295 (35%), Gaps = 9/295 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K ++ S+ Y + L DI+ + ++ +++F EN + Sbjct: 62 KDKIRLLRSIFDNYARILTSQVNGIFRTMTDITVLELRETRYYEYVNAFHENDCMTIVDT 121 Query: 89 ---SSWSSNFFIG--CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 SN + S L +TL+ ++LG S I + + VE L KR + I Sbjct: 122 YVQDKGKSNVPMMSYISPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIMEYIV 181 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIP 202 L S + + +E V MN+ I +A + +P Sbjct: 182 HALGDGFSNYISAEFKIAKIET--NPSMVQEVGLDETVVLAVMNVDISGLAMERIRICLP 239 Query: 203 QETLLKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 L I + ++ + E+ D + + ++ + K ++D+ LK+ Sbjct: 240 GTLLEHMFKIIDNRKHLARGFAYENNQDTIMEHLKASSFPMTGQLGVVKLDIEDLYHLKV 299 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 G VI + + L + ++ ++G KN IRI DRI L Sbjct: 300 GDVIDLNKAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRIIQKDDKAMEALS 354 >gi|167770206|ref|ZP_02442259.1| hypothetical protein ANACOL_01549 [Anaerotruncus colihominis DSM 17241] gi|167667528|gb|EDS11658.1| hypothetical protein ANACOL_01549 [Anaerotruncus colihominis DSM 17241] Length = 329 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 90/273 (32%), Gaps = 14/273 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K K L + + L + + D+ ++ ++ + + + Sbjct: 43 KEQLKAMDGLHETFSRLLSSYLSGILRIGCDVQVLQIDEERYYEYNNALPDTALIGIVGM 102 Query: 89 SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 I S + L++ LLG S + R + +E + +I Sbjct: 103 DPEGEDYSEGTMIIDVSTTMGFYLVDRLLGGSGDDFNFT--RDYTEIEMAIIHTIFKEIV 160 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 L + E L+ + + V + +N+ + ++ + +P Sbjct: 161 GKLEDSWKNSIEVKMTLDSIET--NSRLLQIFAPEDTVIIVVINIKAGKLNATMSICMPA 218 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTY-----QLNVNIDTRINLKKTTLKDVVT 258 + + + +KS +++ + ++ ++ I + K LKD++ Sbjct: 219 DNMEEIIDKFSMKYSKSNRRTDPEKEQMRKEVLLRGVCDTDLPIKATFDQFKMDLKDILQ 278 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 L+ +IP + ++ +G ++ +LG Sbjct: 279 LQPSDIIPLNKKITDDIQVTLDGLPWFTAKLGE 311 >gi|77918773|ref|YP_356588.1| flagellar biosynthesis protein, component of motor switch [Pelobacter carbinolicus DSM 2380] gi|77544856|gb|ABA88418.1| flagellar biosynthesis protein, component of motor switch [Pelobacter carbinolicus DSM 2380] Length = 331 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 97/271 (35%), Gaps = 3/271 (1%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 + + L +M + + + Q ++ + L Sbjct: 61 VLDTLARHLGISLTNRMQRSIGVRRSIMQVYEYDTFLQQLAGRDALGVIRLDPLRWRGVF 120 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 L LLE+LLG + + L RSL+ +E + + TIA LN+ + ++ Sbjct: 121 IFKEKLAFYLLEHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTFAPLEKIE 180 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 +L + + V + +T N+ VL++P L Sbjct: 181 SSLVKIESST--RLINIVPGDASVLAAHFVVTGNNLEDEIVLVLPMAMLDPLKEKMREGS 238 Query: 218 N-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 SE+Q ++ Q++V++ ++ T++D++ K+G ++ + Sbjct: 239 AVFSESQDRPWQTQLEQEIEQMDVDLSAQMATLNLTVRDILNFKVGDILDLGCAPSSPLQ 298 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + A G+ + G +RI+ RIN + Sbjct: 299 VRAAGQPKFQAIAGTHQGKKAVRISGRINRN 329 >gi|294853149|ref|ZP_06793821.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026] gi|294818804|gb|EFG35804.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026] Length = 348 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D S Sbjct: 40 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 96 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P +R Sbjct: 97 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 156 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T+ P ID + + T Sbjct: 157 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 215 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 216 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 275 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D + Sbjct: 276 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 335 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 336 NQEEDLIDELV 346 >gi|266621918|ref|ZP_06114853.1| putative flagellar motor switch protein FliM [Clostridium hathewayi DSM 13479] gi|288866391|gb|EFC98689.1| putative flagellar motor switch protein FliM [Clostridium hathewayi DSM 13479] Length = 295 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 91/285 (31%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K +L + + L M +IS T ++ +S + +F +L Sbjct: 15 KERMSTVENLYDSFARALAPYLTGLMQSYCEISVTGIVERRYQEFSNSVPDRSLFGMITL 74 Query: 89 SSW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + + L ++E LLG + +R + +EK + + + +I+ Sbjct: 75 IPDNKDYNEAPLVLEVDTRLAFFMIERLLGGAGTEYE--LSRDFTDIEKAILQYLLGKIT 132 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + + L + V + + + I+ +++ L++P Sbjct: 133 EFIGDSWKEYLDVDAALTGLQT--NPHLLQVSAPEDVVIQVELEVRIDQLSAVLNLVMPA 190 Query: 204 ETLLKTTLISLSSQNKSENQSEDL----IDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + + T + S+ + E + + V + + +D++ L Sbjct: 191 PNVEELTSKFGYTYAVSQKKDEAKQLAKRGYIEQHLLESEVELRAIFHEFSLDAQDILQL 250 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + G V+P + + + + LG + I + Sbjct: 251 QPGDVVPLNKKVDSSIDIYVEDIACFEARLGHTKLRKAVEINKVL 295 >gi|182412236|ref|YP_001817302.1| flagellar motor switch protein FliM [Opitutus terrae PB90-1] gi|177839450|gb|ACB73702.1| flagellar motor switch protein FliM [Opitutus terrae PB90-1] Length = 351 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 32/294 (10%), Positives = 90/294 (30%), Gaps = 5/294 (1%) Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70 +P+ + + + + L + ++L + +++ + + + Sbjct: 45 TPVLKVEPYDFRNPVFLSEVELRRLRLLHEDFIRYLAARLSLYLRMELGLKMAKLTTATY 104 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 + S + + + L +T+ + LLG R L+ + Sbjct: 105 AKFTDSLPSPTHLCLFKVEPLIGVGILDINPRLALTIADRLLGGRG--HSVKAERYLTEI 162 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 E L + + + T QE P + + + + V + + Sbjct: 163 EIALLEDVVNIVLEEWCTQWKTEQELRPQI--IGHENNGRFLQTSPKDAIVLILTLEANF 220 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID-PFARKTYQLNVNIDTRINLK 249 + + + +P T+ + + K S + + V + + Sbjct: 221 GDCSEQIQIGVPYYTIEPVVKKMQARRQKDTAVSTTAKKAEWQAAYEHIKVPVRAEWSAM 280 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 +L++VV+L++G V + N + +G +++T + Sbjct: 281 DISLREVVSLRVGDVFELPASIFHETRVLLNNVPKFVGTVGLDSDRVAVQLTRK 334 >gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM 20603] gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM 20603] Length = 308 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 94/282 (33%), Gaps = 6/282 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + +I + + ++ + I + + I + + + Sbjct: 29 AREHARIVEMACETFARQWATQLTSRLRVMASIELDKLEMVTYDEYIATLDPHTTLVLFT 88 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 S + +N + L+ LLG + R L+ +E L + + A + Sbjct: 89 ADETRSTALLQIPSNTTMLWLDYLLGGPGLERQE-NPRELTEIETALFRSLLDSSLADMR 147 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 S+ +P + + ++E V N ++T+ + S+ ++ + LL Sbjct: 148 YAFSSITPMNPKIRGLQY--NPQFVQAVPASEAVLVANYSLTVGDRVSAATMMFAADALL 205 Query: 208 KTTLISLSSQNKSENQSEDLI---DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + S Q E+ + + V++ R N +D++ + +G V Sbjct: 206 NPLKVGEGEADPSAAQREEQRVSFERLRLSMNDVPVDVGVRFNSITVRPRDIIDMAVGDV 265 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 I H + G+ I G GK +++TD Sbjct: 266 IELRHAASKPLRIVVEGRTIGHGVPGNNGKQLAVKVTDTHRE 307 >gi|51246520|ref|YP_066404.1| flagellar motor switch protein (FliM) [Desulfotalea psychrophila LSv54] gi|50877557|emb|CAG37397.1| related to flagellar motor switch protein (FliM) [Desulfotalea psychrophila LSv54] Length = 323 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 2/278 (0%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 D K + + + + ++ + I +S F + Sbjct: 48 DDKVKIPNFDIIMDSFARHYSILLSNQLQRTISIERIKLESFDFQDVFDKIAHPGAIGML 107 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I + +L +L+E LLGAS + NR +T+E + K I L Sbjct: 108 DLPPLQQGGLILFNPSLSFSLVERLLGASLDLETVCLNRDPTTIELNVLKVIIDHACLGL 167 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 ++ S + +L + + ++ V + + + +L+IP L Sbjct: 168 DKAFSPLVNMNSSLVKIDSK--PRLMSITDPDDEVIACTFRVILGKDSGEILLLIPLAAL 225 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 S ++ A + ++ +I + + ++ D++ L++G ++ Sbjct: 226 EVLHEDLQHLLRASAKRTTTWQGTIAAEVKKMTADITAQPGRLELSVGDILGLQVGDILE 285 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + + G I +T+RI Sbjct: 286 VDYDPSKPLKVLVENSPKFYGIPGTHNGKKAISLTERI 323 >gi|84514809|ref|ZP_01002172.1| Flagellar switch protein FliM [Loktanella vestfoldensis SKA53] gi|84510968|gb|EAQ07422.1| Flagellar switch protein FliM [Loktanella vestfoldensis SKA53] Length = 320 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 31/296 (10%), Positives = 98/296 (33%), Gaps = 9/296 (3%) Query: 14 HPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 + D + + + + +F+ + + I+ + F Sbjct: 30 DSKGIRDFVFGSDDLSLLGDYYALRVINERFARLARTVFQPMLRVQPRITALMPEVKTFD 89 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + + + + + + L G Q + E Sbjct: 90 QYCENAPVLMSLTTSRIDELRGSKMMVIQPGFISALTNAYYGGDLGLRYQP-RAEFTATE 148 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 ++ + ++ L + + + E + L+ + +E V + ++ + Sbjct: 149 TRVIEIITEGLNRTLLAAWQDLMQLTFSDE--SREENLQFASFVEGSETVIICSFSVQLP 206 Query: 192 NV-ASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + ++ P +TL S Q++ + + R ++ + I+ +++ Sbjct: 207 KADDARIDILYPLQTLKPIAAQLRSRMQSEVIDDDMTWRERLERAVSEVRLPINVQLSKP 266 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L+ ++++ G V P R + G++++ ++G V I IT +++ Sbjct: 267 RVSLRQLISITKGDVYPIQLR--EGLSVMVQGQKMFFADIGEVAGTSAITITQKLD 320 >gi|23499888|ref|NP_699328.1| flagellar motor switch protein FliM [Brucella suis 1330] gi|161620211|ref|YP_001594097.1| surface presentation of antigens (SPOA) protein [Brucella canis ATCC 23365] gi|163844320|ref|YP_001621975.1| hypothetical protein BSUIS_B0131 [Brucella suis ATCC 23445] gi|254702553|ref|ZP_05164381.1| hypothetical protein Bsuib36_01102 [Brucella suis bv. 3 str. 686] gi|254711391|ref|ZP_05173202.1| hypothetical protein BpinB_14272 [Brucella pinnipedialis B2/94] gi|254711990|ref|ZP_05173801.1| hypothetical protein BcetM6_01072 [Brucella ceti M644/93/1] gi|254715060|ref|ZP_05176871.1| hypothetical protein BcetM_01082 [Brucella ceti M13/05/1] gi|256014915|ref|YP_003104924.1| flagellar motor switch protein FliM [Brucella microti CCM 4915] gi|256029979|ref|ZP_05443593.1| hypothetical protein BpinM2_04895 [Brucella pinnipedialis M292/94/1] gi|260568539|ref|ZP_05839008.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40] gi|261216767|ref|ZP_05931048.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261318997|ref|ZP_05958194.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261319634|ref|ZP_05958831.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261753131|ref|ZP_05996840.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987000|ref|ZP_06099557.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|23463463|gb|AAN33333.1| flagellar motor switch protein FliM, putative [Brucella suis 1330] gi|161337022|gb|ABX63326.1| surface presentation of antigens (SPOA) protein [Brucella canis ATCC 23365] gi|163675043|gb|ABY39153.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|255997575|gb|ACU49262.1| flagellar motor switch protein FliM [Brucella microti CCM 4915] gi|260155204|gb|EEW90285.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40] gi|260921856|gb|EEX88424.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292324|gb|EEX95820.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261298220|gb|EEY01717.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261742884|gb|EEY30810.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264659197|gb|EEZ29458.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 316 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D S Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P +R Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T+ P ID + + T Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D + Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 304 NQEEDLIDELV 314 >gi|119714993|ref|YP_921958.1| flagellar motor switch protein FliM [Nocardioides sp. JS614] gi|119535654|gb|ABL80271.1| flagellar motor switch protein FliM [Nocardioides sp. JS614] Length = 335 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 31/273 (11%), Positives = 87/273 (31%), Gaps = 7/273 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + ++ + + +F + +S S + ++ I S + + S Sbjct: 56 SREHSRMLQLAFDDFCRQATTVFTSSLRTVCGVSLASIEQRTYAEYIDSLDASTYLTSFS 115 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 V+T ++++LG + R L+ +E +A I ++ L Sbjct: 116 AEPLFDRGVFEIPLLAVMTCVDHMLGGPGRL--EQPERPLTEIEAGVASGMIERLLGELR 173 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 +++ P ++ + +++ + ++ + I + + +P +LL Sbjct: 174 YSMASIVAFEPVVKGVEY--SPQFVQVAGASDVMVAASLELRINDRTFRMTMCMPFSSLL 231 Query: 208 KTTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L + + + Q A + ++ V + + + ++ L+ G Sbjct: 232 PHLLRAAAPAPVSERERAQRAQAAAELADQFQRVPVEVAVSLRPTTLSPMELAALRPGDA 291 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + H + +G G G Sbjct: 292 LRLRHPAAAPLEVVVDGTCFAHATPGTSGFRLA 324 >gi|256158143|ref|ZP_05456059.1| hypothetical protein BcetM4_04820 [Brucella ceti M490/95/1] gi|256252906|ref|ZP_05458442.1| hypothetical protein BcetB_01037 [Brucella ceti B1/94] gi|261219994|ref|ZP_05934275.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265996661|ref|ZP_06109218.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260918578|gb|EEX85231.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262550958|gb|EEZ07119.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 316 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D S Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P +R Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T+ P ID + + T Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D + Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVQLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 304 NQEEDLIDELV 314 >gi|254706317|ref|ZP_05168145.1| hypothetical protein BpinM_04820 [Brucella pinnipedialis M163/99/10] gi|261313764|ref|ZP_05952961.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261302790|gb|EEY06287.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 316 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D S Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDTSSHFCAR-LKQGSAAAFDAETGSV 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P +R Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T+ P ID + + T Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D + Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 304 NQEEDLIDELV 314 >gi|256059632|ref|ZP_05449829.1| hypothetical protein Bneo5_04675 [Brucella neotomae 5K33] gi|261323602|ref|ZP_05962799.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261299582|gb|EEY03079.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 316 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 112/311 (36%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D S Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P +R Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T+ P ID + + T Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + + + + ++ Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQGVSRARIELEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D + Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 304 NQEEDLIDELV 314 >gi|320354329|ref|YP_004195668.1| surface presentation of antigens (SPOA) protein [Desulfobulbus propionicus DSM 2032] gi|320122831|gb|ADW18377.1| surface presentation of antigens (SPOA) protein [Desulfobulbus propionicus DSM 2032] Length = 345 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 90/287 (31%), Gaps = 5/287 (1%) Query: 22 TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81 T G+ + + + + + + + + F + K Sbjct: 55 TRGSGEMRVPN--LDIVLDSFARKFSTSLTNTLMRNFIVEREDITTTNFQQSLLDLKSQG 112 Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 +S + TLLE +LG+S + +R+L+T+E + K + Sbjct: 113 AVGIYGISPLKHGCLFHFDTLMAFTLLEIMLGSSRSSESLPLDRNLTTIEMFVLKTIMQD 172 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLI 200 I L + E L + + V N+ + N + LI Sbjct: 173 ICNELQTAMRPVVELQAQLTKVE--NNFRLVNIVEPEVEVLVTRFNIQLGNELCGQMRLI 230 Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 IP TL + ++ + + AR+T ++ + R L T++ ++ L+ Sbjct: 231 IPYLTLEPLREKFKALVTITQAAANTWTEIIARETLEMESQVIARSGLITMTIRRILGLQ 290 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 G +I + + + ++ G +T R Sbjct: 291 PGDIIDLQYDPDRPLTVLVEDQPLFLAIPGERNGKKAFHVTGRYTTQ 337 >gi|163783035|ref|ZP_02178030.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1] gi|159881715|gb|EDP75224.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1] Length = 322 Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 95/296 (32%), Gaps = 14/296 (4%) Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70 P L R+ T + + + + +IS + ++ K Sbjct: 33 KPFDINELERI------SPTRLIKLEQVINRWIASATAELRGIIFNLDNISLSEIKTEKI 86 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 S + + ++ + + ++ L+ T++ + G ++ +S + Sbjct: 87 SDFVLKIPLPAAIAVLNVEALNGRLYMVLDTRLIYTIISIIFGG-PAQPYKVEGKSFTKF 145 Query: 131 EKKLAKRTIAQISAVLNQCI-STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E+K+ + + LN +E D ++ NE V I + + Sbjct: 146 EQKIINNLVEVLVRHLNTAWVELIREGEVQFVGIE--DNPRRLITISRNEIVIVITLEVE 203 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 IE L IP +T+ I ++ +S + D V ++ + Sbjct: 204 IEGFKGYVYLAIPMKTIDPIKDILRTADTESGD----FRDVILSNLMGTPVLLEAILPTL 259 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +++ +K G IP R + G ++ LG ++I + Sbjct: 260 VMNVHELLEMKEGDFIPLDPRATDSITVKVAGVPMFKGILGESAGRKAVKIKSFVE 315 >gi|306846301|ref|ZP_07478862.1| surface presentation of antigens protein [Brucella sp. BO1] gi|306273296|gb|EFM55165.1| surface presentation of antigens protein [Brucella sp. BO1] Length = 316 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G G ++ ++ F + K+ D S Sbjct: 8 EHNRKNDALAENLLRAAGLSGGD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P +R Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T P ID + + L + T Sbjct: 125 PFGMVEQKIANLLAGHLADALDRVFNTGSS-QPLFAPGDCIDTADFDRDNLELSRLFTCR 183 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D + Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 304 NQEEDFIDELV 314 >gi|332669206|ref|YP_004452214.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484] gi|332338244|gb|AEE44827.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484] Length = 309 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 27/285 (9%), Positives = 77/285 (27%), Gaps = 6/285 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 L + + + ++ + +++ + + Sbjct: 21 DFRRPLTLAREHSRHLEMAFQRVARQFATQLTARLRVVSQVTFEDLELRTYDEYTGGLPT 80 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 ++ + + ++ L G + R L+ +E L + + Sbjct: 81 PTAMVMCAMEPSRQTAVLQIPVGATLVWIDYLFGGDGRG-DEREGRELTDLEWTLVRDLL 139 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 L + S + + + E V + + Sbjct: 140 QHAIGDLEYSFAGVTPMSATVRSVQY--NPQFAQVVAAQETVLVAVFLLRVGEREDRMTF 197 Query: 200 IIPQETLL---KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 ++P + LL +++ + + + + R + V++ + +DV Sbjct: 198 MLPSDLLLGALRSSEGADARSEEERQVARIAHAELERAVQDVPVHVAVQFRPVTVHPRDV 257 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 V L +G V+P H + +G + G G ++ Sbjct: 258 VNLTVGDVLPLSHPSSEPLDVVVDGIVLARAAAGSHGSRLACQVV 302 >gi|306837356|ref|ZP_07470235.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF 2653] gi|306407548|gb|EFM63748.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF 2653] Length = 348 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 110/311 (35%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D Sbjct: 40 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPV 96 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P +R Sbjct: 97 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDR 156 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T P ID + + T Sbjct: 157 PFGMVEQKIANLLAGHLADALDRVFNTGSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 215 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 216 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 275 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ A ++++ C LG+ G ++T+++ D + Sbjct: 276 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPV 335 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 336 NQEEDFIDELV 346 >gi|254699436|ref|ZP_05161264.1| hypothetical protein Bsuib55_01034 [Brucella suis bv. 5 str. 513] gi|261749887|ref|ZP_05993596.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261739640|gb|EEY27566.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] Length = 316 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 112/311 (36%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D S Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P +R Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T+ P ID + + T Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + L + L+IGQV+ L A ++++ C LG+ G ++T+++ D + Sbjct: 244 FMQQGSMLLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 304 NQEEDLIDELV 314 >gi|225569967|ref|ZP_03778992.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM 15053] gi|225161437|gb|EEG74056.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM 15053] Length = 336 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 104/286 (36%), Gaps = 9/286 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K K+ + Y + + ++ S + ++ + EN V +L Sbjct: 48 KDKLKLLKGIYDNYGRLASSRLNGVLRTACEMEVLSVEEQRYFEFSNILSENDVMMMLNL 107 Query: 89 S-SWSS---NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 S I S L++ +++ +LG + + + + S +E L K+ + + Sbjct: 108 KLPDESKNPPMMIHISQKLMVNMIDRMLGGTGDDDDVDSSYTYSEIESALYKKVMKYLLD 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 + + + L D + +E V + +N+ ++N+ + IP Sbjct: 168 ITRDAWGNYIKIN--LGDQRLEENPGLFQEISLDEPVAIVLLNVKMQNIDGRITICIPGN 225 Query: 205 TLLKTTLISLSSQNKSENQSE---DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 L+ I ++ E + + + + + I + + ++K+V LK+ Sbjct: 226 LLMNIFNIIDKRKHVDGLYDEGIANSRELIMTRLNRSTMEIKAELAEAQLSMKEVCGLKV 285 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 G VI ++ +L + + +LG KN ++I I + Sbjct: 286 GDVIDLNKSRESDVVLYVEEQPWFRGKLGAHNKNAAVKIKQCIQEE 331 >gi|17989455|ref|NP_542088.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str. 16M] gi|256043048|ref|ZP_05445993.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str. Rev.1] gi|256111966|ref|ZP_05452917.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 3 str. Ether] gi|260564280|ref|ZP_05834765.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str. 16M] gi|265989486|ref|ZP_06102043.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993415|ref|ZP_06105972.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|17985334|gb|AAL54352.1| flagellar motor switch protein flim [Brucella melitensis bv. 1 str. 16M] gi|260151923|gb|EEW87016.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str. 16M] gi|262764285|gb|EEZ10317.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263000155|gb|EEZ12845.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 316 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 48/311 (15%), Positives = 112/311 (36%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D S Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P + Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADH 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T+ P ID + + T Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D + Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 304 NQEEDLIDELV 314 >gi|325527237|gb|EGD04619.1| flagellar motor switch protein FliM [Burkholderia sp. TJI49] Length = 220 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 21/196 (10%), Positives = 51/196 (26%), Gaps = 8/196 (4%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 P + R+ + + + L M +IS + + Sbjct: 33 SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 K+S + + + NLV +++NL G ++ R Sbjct: 87 LKYSEFTRTLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ R + + + + + NE V + Sbjct: 147 TATEQRIIGRLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204 Query: 188 MTIENVASSFVLIIPQ 203 + + +P Sbjct: 205 IEFGPTGGKLHICMPY 220 >gi|148554378|ref|YP_001261960.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1] gi|148499568|gb|ABQ67822.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1] Length = 331 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 29/288 (10%), Positives = 84/288 (29%), Gaps = 10/288 (3%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 + + L + + + ++ +F + ++ S Sbjct: 52 RPVAHLAHLERMNERIARRLRDVIEPIAQTRSKVDPIPLETRRFDEWQRNQADHMSLSLF 111 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + + V +++ G + + + E++L +R I VL Sbjct: 112 RVRPVKGMMMVAVEPSFVTNMVDAFYGGTGNGLTTKGG-EFTPSEQRLQRRLTDAIVEVL 170 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQET 205 + S T + ++E V + + + ++ ++ P Sbjct: 171 TRVWSDTFPLQFDFSTHET--NAAFANMVRADEPVVVQSFTIKPGMSRSTRVEILYPLSL 228 Query: 206 LLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L + +Q ++ + + + + + + + ++ ++ LK G V Sbjct: 229 LQPIEDQIAARTQAGADGDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDV 288 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 IP L + +G + I +++ LK Sbjct: 289 IPVNL--SQTVPLLVGNRRFAEGTIGEQDGRAALMIESL---NKEVLK 331 >gi|114777574|ref|ZP_01452555.1| flagellar motor switch protein FliM [Mariprofundus ferrooxydans PV-1] gi|114552045|gb|EAU54562.1| flagellar motor switch protein FliM [Mariprofundus ferrooxydans PV-1] Length = 330 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 95/295 (32%), Gaps = 8/295 (2%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + + R D + +L + + + E DV + +S +S + I Sbjct: 38 EHVEVYRFNVNDEDSPERYPMFVNLQERLIEMFDEQWHELFKRDVSVQVSSLESLFYKDI 97 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 + S V+ + + L++ ++ +LG + ++LS VE + Sbjct: 98 V-SVDAPQVYFVFEADGY-GRMLVSFDTALIVAFVDAMLGGDGDADDNP--QTLSAVELR 153 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN- 192 L++R +IS L +L + + E + ++ + + Sbjct: 154 LSERIADKISKTLGDLWQPVYPLDFSLHKLDY--DPQFLAVTGAMEKCFSTFFDIKLNDE 211 Query: 193 VASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + + P+ L + + ++S + + + ++ Q + + + Sbjct: 212 LNGQMGIYYPRSFLEPMLDVLRVTVTDESGDTDMEWTNGLMQRLSQTPAALRFELGRCQI 271 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + + + G +P R L + ++ G IT+ + Sbjct: 272 DIGAFLKMMPGDFLPISTRANDPCSLWIDEIPLFQATPGEKNGGLAAEITEPVQP 326 >gi|225685986|ref|YP_002733958.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC 23457] gi|256262888|ref|ZP_05465420.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str. 63/9] gi|225642091|gb|ACO02004.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC 23457] gi|263092725|gb|EEZ16934.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str. 63/9] gi|326410312|gb|ADZ67376.1| Flagellar motor switch protein fliM [Brucella melitensis M28] gi|326553605|gb|ADZ88244.1| Flagellar motor switch protein fliM [Brucella melitensis M5-90] Length = 316 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 48/311 (15%), Positives = 111/311 (35%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D S Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S F + + + W + ++ LV +++E + GA P + Sbjct: 65 ESTDKMAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADH 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T+ P ID + + T Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D + Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 304 NQEEDLIDELV 314 >gi|254720632|ref|ZP_05182443.1| hypothetical protein Bru83_14198 [Brucella sp. 83/13] gi|265985676|ref|ZP_06098411.1| conserved hypothetical protein [Brucella sp. 83/13] gi|264664268|gb|EEZ34529.1| conserved hypothetical protein [Brucella sp. 83/13] Length = 316 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 110/311 (35%), Gaps = 5/311 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPV 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P +R Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDR 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T P ID + + T Sbjct: 125 PFGMVEQKIANLLAGHLADALDRVFNTGSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ A ++++ C LG+ G ++T+++ D + Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPV 303 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 304 NQEEDFIDELV 314 >gi|254461418|ref|ZP_05074834.1| flagellar motor switch protein FliM [Rhodobacterales bacterium HTCC2083] gi|206678007|gb|EDZ42494.1| flagellar motor switch protein FliM [Rhodobacteraceae bacterium HTCC2083] Length = 324 Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats. Identities = 32/272 (11%), Positives = 88/272 (32%), Gaps = 7/272 (2%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + + + +F+ + + IS F S + + Sbjct: 54 ALRVINERFARLARSVFQPMLRVQPRISAQLPTVQTFDEYSKDSPSLMSLSTSRIDELRG 113 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 + + + L G + + E ++ + ++ VL Sbjct: 114 SKMMVMQPEFISALTNGYYGGEL-GLKHALRSEFTATETRVIEIITNGLNDVLLTAWQDL 172 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLI 212 S + + L+ + + + + + S + ++ P +TL Sbjct: 173 MPLSFSEH--AREENLQFASFVDGGDTIIVCKFTVQLPKAESATLDILYPLQTLKPIAAQ 230 Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S Q+ + + Q+++ ++ +++ K +L+++V L+ G V P + Sbjct: 231 LRSRMQSDVIEDDLTWRERLEQAVMQVSLPMNVQLSKPKVSLRELVELEAGDVFPIQLKT 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + +G+E++ ++G V I I + Sbjct: 291 G--LGVMVHGQEMFVADIGEVAGTSAITIIRK 320 >gi|269796385|ref|YP_003315840.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542] gi|269098570|gb|ACZ23006.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542] Length = 315 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 7/302 (2%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 P P + + + + + ++ + V + + Sbjct: 18 QRPAQPEAYD-FRRPMTLAREHGRAFEMAFETFARQWGTQLTSRLRVMVGVGLDGVEMVS 76 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 + + + S+ + S + ++ + ++ +LG +L R L+ Sbjct: 77 YDEYVRRLPNHTTMVLCSIETTRSTAVLQVASETSMLWVDYVLGGPGLVREELP-RELTE 135 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E L ++ A L ++ + ++E V +T Sbjct: 136 IETTLITDMLSGALADLRYAFVAVVPLDVRVKAIQY--NPQFVQAAPASEAVIVATFTLT 193 Query: 190 IENVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + ++ L+IP + LL + ++ D R + V++ R+ Sbjct: 194 VAERPTTATLMIPADVLLAPMRAGEGVVQRSKDELAEAAAASDRLHRTMSTVPVDVHVRM 253 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +DVV L +G+VI H + +G + G G+ +I D Sbjct: 254 RPVTVHPRDVVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHGVAGNNGRQLACKIVDSEGE 313 Query: 307 DQ 308 D+ Sbjct: 314 DR 315 >gi|119469993|ref|ZP_01612798.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7] gi|119446703|gb|EAW27976.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7] Length = 230 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 69/192 (35%), Gaps = 5/192 (2%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+ +L + E+++ + + I + + + + E Sbjct: 4 TMQKLKAGEFTPTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSP 61 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTY 236 E V + ++ ++ F + +P L + + Q+ +E+ + Sbjct: 62 TEVVVISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIM 121 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V++ T++ TL+ ++ LK G +IP + + ++GR N Sbjct: 122 DVEVDMSTQLLEVDLTLQQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDNV 179 Query: 297 TIRITDRINFDQ 308 ++I+++I Sbjct: 180 ALQISEKIKRPD 191 >gi|153011533|ref|YP_001372747.1| surface presentation of antigens (SPOA) protein [Ochrobactrum anthropi ATCC 49188] gi|151563421|gb|ABS16918.1| surface presentation of antigens (SPOA) protein [Ochrobactrum anthropi ATCC 49188] Length = 317 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 107/306 (34%), Gaps = 6/306 (1%) Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70 S + L R G GD ++ ++ F + K D+ +S Sbjct: 15 SDVLAENLLRAAGLSGDD--LKSLAHVFKDASTHFCDR-LKHGCAAAFDVEAGQVESTDD 71 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 + + + + W S ++ LV +++E + GA +R + Sbjct: 72 AAFADILDKAAIIAPLKAERWGSTLYLTADATLVFSVIEAMYGAQGHVGSVDEDRPFGML 131 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 E+K++ +++ L+Q + D + + + +++T Sbjct: 132 EQKISALLAGHLASSLDQVFAANG--QALFTAGECTDTAEFDRENFERSRLFACRIDVTA 189 Query: 191 ENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 L++P+ T + + ++ + + ++ I Sbjct: 190 AGKTGQVHLLLPRSTHKPMQDAVAAFLRRPMNQTDPSWAKKMRQEVSRARIELEAFIQQG 249 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 TL + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ Sbjct: 250 SMTLDALSMLEIGQVLKLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEED 309 Query: 310 SLKNFL 315 + + Sbjct: 310 FIDELV 315 >gi|226225727|ref|YP_002759833.1| flagellar motor switch protein FliM [Gemmatimonas aurantiaca T-27] gi|226088918|dbj|BAH37363.1| flagellar motor switch protein FliM [Gemmatimonas aurantiaca T-27] Length = 331 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 97/301 (32%), Gaps = 8/301 (2%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 S + + K + ++ K ++ +++ S + Sbjct: 25 ASAGLDVQVYDFRRPHRVSKERLRTLEAMYERLVKGFEAWLISRVRGQIEVRLQSVEQFS 84 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 F S ++ I +++ L G R+L+ Sbjct: 85 FGEFTLSLPMPCSSYIFDIAGTGQKGVIDVGPEFSTYIVDRLFGGEGT--GSALTRALTP 142 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E+ + +I+ +L + N+ F + + V N+ + Sbjct: 143 IERMAVRNVADKITGLLQEIWQDHVAMDLNITGFE--SSPEILQVVNREDPVLVANVEVN 200 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTR 245 +V+S +L +P L K + + N +E + ++ V + R Sbjct: 201 TGSVSSLLLLCLPFSVLDKFFTSNGQQRLALLNTNEQEREATRQRSEAALRATKVPLTAR 260 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +++D+ + G VIP + ++ A +E + GRV N +RI D + Sbjct: 261 LPDFQLSMRDLAQITEGSVIPTAIPKDARVLIRAGTQERFIGHAGRVNGNLAVRIVDALP 320 Query: 306 F 306 Sbjct: 321 S 321 >gi|83944184|ref|ZP_00956640.1| possible flagellar motor switch protein FliM [Sulfitobacter sp. EE-36] gi|83845051|gb|EAP82932.1| possible flagellar motor switch protein FliM [Sulfitobacter sp. EE-36] Length = 318 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 102/299 (34%), Gaps = 4/299 (1%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 L+ + + +G + L + M + S S +I Sbjct: 18 LIDEIIRMSDFTFDRLPMLDIIGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEG 77 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + + + +++T +E +LG + + + + +E + Sbjct: 78 LPKPTFLAVGTGHPFVGEILVVMDQAVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGE 137 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 R + + A L + +S ++ L+ + + + +++T+ + Sbjct: 138 RLASAVFAELERSLSVVGAANLELDRIETE--AEGAAIAKNTSLCARLRLSLTLAGNTGN 195 Query: 197 FVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L+IP + L + + + + NV++D ++ L+ Sbjct: 196 LDLVIPYDALEQILPDLGKVYFGDRMVSQDQWRGLIGAQIERANVDLDVVLSENVFPLQK 255 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKNYTIRITDRINFDQKSLKN 313 +++ + G I F E A ++ +++ LG+ ++IT+++ + + Sbjct: 256 IMSWRPGDTIDFGIEEGRDATVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314 >gi|83955115|ref|ZP_00963771.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1] gi|83840444|gb|EAP79617.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1] Length = 318 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 102/299 (34%), Gaps = 4/299 (1%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 L+ + + +G + L + M + S S +I Sbjct: 18 LIDEIIRMSDFTFDRLPMLDIIGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEG 77 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + + + +++T +E +LG + + + + +E + Sbjct: 78 LPKPTFLAVGTGHPFVGEILVVMDQTVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGE 137 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 R + + A L + +S ++ L+ + + + +++T+ + Sbjct: 138 RLASAVFAELERSLSVVGAANLELDRIETE--AEGAAIAKNTSLCARLRLSLTLAGNTGN 195 Query: 197 FVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L+IP + L + + + + NV++D ++ L+ Sbjct: 196 LDLVIPYDALEQILPDLGKVYFGDRMVSQDQWRGLIGAQIERANVDLDVVLSENVFPLQK 255 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKNYTIRITDRINFDQKSLKN 313 +++ + G I F E A ++ +++ LG+ ++IT+++ + + Sbjct: 256 IMSWRPGDTIDFGIEEGRDATVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314 >gi|163784305|ref|ZP_02179215.1| Flagellar motor switch protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880423|gb|EDP74017.1| Flagellar motor switch protein [Hydrogenivirga sp. 128-5-R1-1] Length = 263 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 81/250 (32%), Gaps = 4/250 (1%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 +S +F+ + ++ S+ N + + LV T++ L G + Sbjct: 17 VSQNDIYITRFNDFMLKIPLPASYTIISMKPLKENSLLVLDSRLVFTIISVLFGGPPK-P 75 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ R + +E K+ I + +E +E Sbjct: 76 FKVEGREFTKLEIKVINDFIKAVLETFESVWEQIYPIK--IEMKSIELNPNLARIVSPSE 133 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 V + +++ I+ + PQ L S + + K +++ Sbjct: 134 KVIVVELSIDIDGYEAPMFFCFPQNMFLPIKDFIYSEVT-QFEEDVAWKNYLLEKVHKIK 192 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + +KD++ K G + T + K + +LG+ + + ++ Sbjct: 193 VKLWVELFKETYKVKDILEWKEGTKLETKISTDTLLKVYIEDKPKFLGKLGKKKEKFAVK 252 Query: 300 ITDRINFDQK 309 I D ++ Sbjct: 253 IKDIYLGEKN 262 >gi|1870714|gb|AAB48838.1| FliM [Sinorhizobium meliloti] Length = 258 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 125/252 (49%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC ++I L+E LLG + +I + Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDTPVLIALVEALLGPNPTSIEEPPP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A ++I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFSRIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDV 256 RI L+ TL + Sbjct: 244 RIRLESLTLDTL 255 >gi|296447445|ref|ZP_06889370.1| surface presentation of antigens (SPOA) protein [Methylosinus trichosporium OB3b] gi|296255065|gb|EFH02167.1| surface presentation of antigens (SPOA) protein [Methylosinus trichosporium OB3b] Length = 339 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 107/301 (35%), Gaps = 3/301 (0%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + RL G + ++ ++ + ++ S + + + + Sbjct: 39 AVRERLLAGGGLSPDRLPMLRVALDEAALGFEEMLRKLGFVSPQVAVESVAATRAAEAQN 98 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + + + + + +G V ++E L GA R+L++VE +LA Sbjct: 99 ALDALAITATYGGAEPDARVTLGAERKFVFAMVEGLFGADGSEPFYEEERALTSVEIRLA 158 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + + +++ L ++T ++ L+ + + +T S Sbjct: 159 RLVLDRLAKALQISFASTAGAALALDPVEPK--PEPAGAARRSGSALICRFRLTAFGAES 216 Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 ++ PQ L + ++ + V++ + + TL Sbjct: 217 EALVTFPQGVLDPLREALAADPATTIQSADPLWAQRMKDRITATEVSLTAVMERRDLTLG 276 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 DV ++GQ++ L G+ ++ CE+G+ YTIRI D ++ +Q+ + + Sbjct: 277 DVARFEVGQIVELPVSPTGLIALECEGQTLFWCEIGQKDGAYTIRIADFVDKEQEFIDDM 336 Query: 315 L 315 L Sbjct: 337 L 337 >gi|110632665|ref|YP_672873.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp. BNC1] gi|110283649|gb|ABG61708.1| surface presentation of antigens (SPOA) protein [Chelativorans sp. BNC1] Length = 311 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 54/305 (17%), Positives = 102/305 (33%), Gaps = 6/305 (1%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ +++ RL G GD + + + + + L IF+ K + + + + + Sbjct: 10 PMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIAGVEVVRLA 69 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + + + L+ LLG + P +R S +E Sbjct: 70 ELKPEPDSFDALVVIPATDSRDALTMRLDAQALSLLVSILLGGDPDIPPSPLDRPPSRIE 129 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL-KKNTNRLSNEFVTTINMNMTI 190 +A+ + LN S + L + + + I ++ Sbjct: 130 LDVARLVFGAFAQALNGTGSRSLGL--RLPAPQPLAGPGDFKRFLVRDGPGIRIAFSLGA 187 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 V+ +P +LK + F + + V + I L K Sbjct: 188 GPVSGILTAWLPHRIILKAR---APAAEDDSPAHTQWKQRFGEEVRRSTVQVTATIPLTK 244 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L + LK GQV+ LS + ++ CE GR+G+NYT+RI + Q Sbjct: 245 LPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRIRQPFDDRQAV 304 Query: 311 LKNFL 315 L L Sbjct: 305 LDGLL 309 >gi|94968664|ref|YP_590712.1| flagellar motor switch protein FliM [Candidatus Koribacter versatilis Ellin345] gi|94550714|gb|ABF40638.1| flagellar motor switch protein FliM [Candidatus Koribacter versatilis Ellin345] Length = 329 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 93/283 (32%), Gaps = 10/283 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + SSL + + L + + + + S + + ++ E +S + Sbjct: 48 REQVRSISSLHEGFARNLTHSLGAYLRVPFEANLVSVEQLTYRELLGRLPEVAYYSTFRI 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + +L +++ LLG Q+ R ++ +E+++ + + L Sbjct: 108 GTADNIGAMEMDLSLAFPMIDILLGGQGGHDEQV--REITEIEEQILEVVAKVVCKELET 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ET 205 E L++ E + + + + S L Sbjct: 166 AWQP-LGMEFAFEARQQAAQLQR--LMPPTEKILALCFELEMPGCRGSLNLAFSAVVSNA 222 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 LL+ + +S D RK + + +++++ L+ G ++ Sbjct: 223 LLRKLSKDWGYRRQSRESDGD--GKLHRKLLGCPFPVSLGLVDASVRVRELLQLRAGDIL 280 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 P ++ LS G+ + R G +I RI+ + Sbjct: 281 PLKRSAESAIELSVGGRASFRARPVRSGNWRAAQILGRISTAK 323 >gi|56551539|ref|YP_162378.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761177|ref|ZP_04759266.1| flagellar motor switch protein FliM [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752861|ref|YP_003225754.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543113|gb|AAV89267.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374796|gb|EER64257.1| flagellar motor switch protein FliM [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552224|gb|ACV75170.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 332 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 83/285 (29%), Gaps = 8/285 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + L I + ++ F E S Sbjct: 54 PIVRMAGLERIAEKLARRLRLIIEPFARARTQVTVDGVDIHHFEKWRRDLPEFVSISLYR 113 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L+ I + L++ G + P + + E++L R I+ + Sbjct: 114 LAPLKGGAMIVMDPQFITGLVDAFYGGTGIVTPSRA-KEFTPAEERLLVRLSDTIADSVV 172 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETL 206 + S + T ++E V + A+ ++ P+ TL Sbjct: 173 ESWSDVVQLQSQF--LSRETNGAYVTMIRNDEAVVVQRFTIVPGNGRAARISIVYPRATL 230 Query: 207 LKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + E+ + + I T + + T+ + LK+G+VI Sbjct: 231 RPFEMHLDTKVHDDAGPADENWTKRMRLAASAIPIPIKTILARPQITMGQLKNLKVGEVI 290 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 P L A K+I +G + I +++ + + Sbjct: 291 PIEMP--EQLPLIAGTKKIAYGSIGDRDGKTALLI-EKLEEEPEI 332 >gi|152965629|ref|YP_001361413.1| flagellar motor switch protein FliM [Kineococcus radiotolerans SRS30216] gi|151360146|gb|ABS03149.1| flagellar motor switch protein FliM [Kineococcus radiotolerans SRS30216] Length = 314 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 35/284 (12%), Positives = 82/284 (28%), Gaps = 6/284 (2%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 + ++ + + + + V + Q + S Sbjct: 27 DFRRPTKLSRQHARVLEITYEGFCRQWATLLSSTLRTTVQVELDGIQQYSYDEYAASLPM 86 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 V + + V++ +E +LG + R L+ +E LA+ + Sbjct: 87 PTVMAVFDPEPLVGAAVLHMDMAFVLSCIERMLGGTG--HNAQPERQLTDIEAVLARGMV 144 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + L + T + P L + + + + ++ ++ VA + L Sbjct: 145 ERTLVELASSLVTVTDLKPKLTAID--QNPAFAQAAAATDVMIVSSFHLEVDGVAGTATL 202 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDL--IDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 +P + L + E D + V + R+ + +++ Sbjct: 203 AMPLDPLSTALTAAELRVASPEELRIRRLMRDRLDDHLEHIPVEVSVRMKAAQMRPDEIL 262 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L G V+ HR + ++ + S G G I Sbjct: 263 GLVPGDVLRLPHRADEPLEVVSSDAHVASAVAGSRGAKLACLIV 306 >gi|313905139|ref|ZP_07838508.1| surface presentation of antigens (SPOA) protein [Eubacterium cellulosolvens 6] gi|313470042|gb|EFR65375.1| surface presentation of antigens (SPOA) protein [Eubacterium cellulosolvens 6] Length = 368 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 96/274 (35%), Gaps = 9/274 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K K+ S+ Y + L DI+ + ++ ++SF EN + Sbjct: 52 KEKLKLLRSIFENYARILTSQVNGIFRTMTDITVMELRESRYYEYVNSFHENDCMTIIDT 111 Query: 89 -----SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 +S I + L++TL+ ++LG + I N S VE L KR + I Sbjct: 112 VMPEKGKFSVPMMIYVTPGLILTLMSHMLGGGEQVISTEENYRYSDVEMSLYKRILEYII 171 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIP 202 L S + +E V +++N+ + +AS + IP Sbjct: 172 HALGDGFSNYLTVDFR--PQKVEENPSMIQEVGLDETVVLVHLNVDVTGIASEKIRICIP 229 Query: 203 QETLLKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 L + + ++ + + + + + ++ + T++D+ L++ Sbjct: 230 GTLLEQIFRTIDNRKHIARGFTYSNNSEVIMSHLKETKFPLTAQLGTVRLTMEDLYRLQV 289 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 G VI + L + + +G KN Sbjct: 290 GDVIDMNKSKDATLSLFVGKQPWFKGTMGVHHKN 323 >gi|218672165|ref|ZP_03521834.1| flagellar C-ring motor switch protein [Rhizobium etli GR56] Length = 209 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 113/209 (54%) Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167 +E+LLGA+ +TI + +R LS +E LA +I+ VL ++ P+L + D Sbjct: 1 MEHLLGATADTIEEPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHD 60 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 + +EF INM++T+ + S F LI+PQ LLKT + + ++ S + Sbjct: 61 TRPRPAEDKPDEFAAAINMSITLAGIVSEFSLIVPQTALLKTQVTPPKPKRQAGGASPEW 120 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + + + +V ++ RI L+ TL+ + L +G VIPF + +SAN KE+Y C Sbjct: 121 TEQLGDQVRRSHVTLEARIRLQDLTLRTISKLMVGDVIPFRDTGEVRVEVSANSKELYIC 180 Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFLH 316 E GR G+NY +R+ D +N D + +++ ++ Sbjct: 181 EFGRSGENYMVRVKDTMNSDDELIRHLMN 209 >gi|195952553|ref|YP_002120843.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1] gi|195932165|gb|ACG56865.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1] Length = 321 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 31/275 (11%), Positives = 88/275 (32%), Gaps = 6/275 (2%) Query: 35 SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94 + + + + +I +F +I + +++ Sbjct: 50 LEIILEKWSRLSRVKLSSLIVAINNIYKAETSLIRFEDLITKLPVPSCINMFNITGLKGT 109 Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 F+ ++ +++ + G S + ++ + + +E K+ K+ + + + + ++ Sbjct: 110 HFLILDPRMIYSIVSVIFGGSAKPY-RIEGKEFTKLELKIIKKVVDLLLSAFQESWNSI- 167 Query: 155 ESSPNLEDFYDIDYLKK-NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 S + E ++N+ I+ + L I +L Sbjct: 168 -LSGEVMYLETEVNPALIAPMNSKKEMFIQAHINIEIDGIDYPIFLAIQNSSLEPVVDRL 226 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + S+ D I+ L V++ I+ +KD++ ++G I Sbjct: 227 RNVSEVSDYVDYDSIN--KNLIKNLTVSLSVAIDGGDFMVKDILEWEVGDTITLKTSANR 284 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ G LGR ++I ++ + Sbjct: 285 PVKVNIEGMLKMYGVLGRSNSKKAVKILKLLDNKE 319 >gi|239834451|ref|ZP_04682779.1| surface presentation of antigens (SPOA) protein [Ochrobactrum intermedium LMG 3301] gi|239822514|gb|EEQ94083.1| surface presentation of antigens (SPOA) protein [Ochrobactrum intermedium LMG 3301] Length = 321 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 104/301 (34%), Gaps = 10/301 (3%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 R G GD ++ ++ F + K DI +S + + Sbjct: 24 RAAGLSGDD--LKSLAHVFKDASTHFCDR-LKHGCAAAFDIDAGQVESTDEAAFADILDK 80 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ----LYNRSLSTVEKKLA 135 + + W ++ LV +++E + GA +R +E+K++ Sbjct: 81 AAIIAPLKAERWGCTLYLTADATLVFSVIEAMFGAQGNIGGNVGSVDEDRPFGMLEQKIS 140 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 ++ L+Q + ++ ID + + + +++T Sbjct: 141 ALLAGHLAKSLDQVFAGNGQT--LFAAGECIDTAEFDRENFERSRLFACRIDVTAAGKTG 198 Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 L++P+ T + + + + + ++ I TL Sbjct: 199 RVHLLLPRSTHKPMQDAVAAFLRRPMNQADPSWAKKMRHEVSRARIELEAFIQQGSMTLD 258 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + Sbjct: 259 ALSMLEIGQVLKLPADAMEQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDEL 318 Query: 315 L 315 + Sbjct: 319 V 319 >gi|220913720|ref|YP_002489029.1| surface presentation of antigens (SPOA) protein [Arthrobacter chlorophenolicus A6] gi|219860598|gb|ACL40940.1| surface presentation of antigens (SPOA) protein [Arthrobacter chlorophenolicus A6] Length = 298 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 32/278 (11%), Positives = 81/278 (29%), Gaps = 9/278 (3%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 + ++ + + K+ + + + S Sbjct: 19 DFRRPTTLPRQHSRVLEVAFETFARQWGTQLTAKVRVKSSATLEQLSMQSYDEYAASLPS 78 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + S + + + +LG S + + R + +E L +R + Sbjct: 79 VTSMVLCRIDGSESRLVLQFPATAALAWISRMLGGSGD--ADVPERKFTQIEHALVRRMV 136 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 L + + + ++ + E + ++ + + S+ L Sbjct: 137 EDSLEDLKYSLGSLLAAPLAMDVVQY--NSQFAQAAAPGELMIVATFSVQVGELPSAATL 194 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 IP + LL + D + Q+ V++ ++ T ++ L Sbjct: 195 AIPADVLLPGL-----GAVNPTAPTADAGALVRAQVAQVPVDVAVQLARTSVTPAQILGL 249 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 +G V+P H E + ++ NG + + R G Sbjct: 250 AVGDVLPLPHPENSPFDVTVNGTRLATAAPARNGSRAA 287 >gi|300024614|ref|YP_003757225.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526435|gb|ADJ24904.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium denitrificans ATCC 51888] Length = 322 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 36/307 (11%), Positives = 96/307 (31%), Gaps = 13/307 (4%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R ++ ++ + + + V + + Sbjct: 16 LERALSAGQNRPDRLPGLQTIFGQLPRVMVEELGSVSSFPVKARLLDLSASTIGE-SCNL 74 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 N W + + L +E+ LG L R L+ + + + Sbjct: 75 PPNTYAGVVRAERWRNWLYFISDPTLTALFVESALGCEGLPPTGLTERRLTKTDANILRV 134 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 +++ L+ S + +L D +D ++ ++ V + + + Sbjct: 135 MFRRVTRALSHAFSILVDVQLDLGD--VVDKIELEPQLSTSSPVISARLAIEYFGQTGIL 192 Query: 198 VLIIPQETLLKTTLISL----------SSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 ++IPQ + + + + + + + + ++ + Sbjct: 193 TIVIPQAAIEPVRDLLAVASAGEAVGAAPPSARAYDDTSWSKQLSEEIARAFIGLNGILE 252 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + +L +V +G V+ L A+ ++ CELG+ T+RI D + + Sbjct: 253 ERPISLGEVQRFAVGSVVELTSTSLARVRLDADEIPLFWCELGKRDGTLTLRIEDDFDQN 312 Query: 308 QKSLKNF 314 ++++ F Sbjct: 313 KETIDEF 319 >gi|254446496|ref|ZP_05059972.1| flagellar motor switch protein FliM, putative [Verrucomicrobiae bacterium DG1235] gi|198260804|gb|EDY85112.1| flagellar motor switch protein FliM, putative [Verrucomicrobiae bacterium DG1235] Length = 338 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 30/273 (10%), Positives = 89/273 (32%), Gaps = 5/273 (1%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 + ++L + L+ + + + +S + + Sbjct: 67 RIRHEEFIRYLAARLSIFLRLEYSLKMSRLSTLTYSKFTETIPNPAHVVLFKIEQLFGVG 126 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I + L +T+++ +LG R L+ +E L + + + + QE Sbjct: 127 VIDINPRLALTMVDRMLGGKG--HSVQGERYLTEIETNLVDDVVGIVLEEWCRQWKSEQE 184 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + + ++ + ++M + + + + + +P TL Sbjct: 185 LDTTI--IGHESNGRFLETSPADAIMLVLSMEAGVGDCSETIQIGLPYYTLEPIIKRMHE 242 Query: 216 SQNKSENQS-EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++ K + Q+++ + + + T K+V+ L+ G VI F Sbjct: 243 AKEKDLGMDLTQAESSWQSSFNQIDIPVQAEWDGQTLTTKEVMNLRPGDVIRFPKTVLKD 302 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + ++ E+G +++ ++ + Sbjct: 303 TRVRLSNSIKFTGEVGLENDRVAVKLDKKLEEE 335 >gi|319409195|emb|CBI82839.1| Flagellar motor switch protein FliM [Bartonella schoenbuchensis R1] Length = 335 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 108/303 (35%), Gaps = 3/303 (0%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 +L + G + L L+ S + K II Sbjct: 34 DVLAQHILRAAGLSSDDLMSFQYVFRDAASSLCAQLGHYTSLEFSTDVQSLDTLKSDKII 93 Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + + + S S W + LV + E GA+ + R S E K+ Sbjct: 94 QTIGTDTLLIYFSSSLWGDDVIFVLDATLVDLITEAFFGAAEPKLINRNGRPFSPTEYKI 153 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 ++ ++ ++ T S + + N + + + + + Sbjct: 154 SEYFGKLLANTMDGIFGTGDGSLLLFKQILKAQ--EFNAETFHQSQMFSCTLGVKCNEIE 211 Query: 195 SSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 ++ +++P+ + + +++ ++ + +V+I+ I TL Sbjct: 212 TNVNILMPRSCHRPIQEAVTRALRAPAKHTDPLWAKRLKQEVSRAHVSIEAFIQQGSMTL 271 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 ++ L++GQV+ L + K +Y C LG++G N++IR+TD I+ +++ + Sbjct: 272 DELSKLQVGQVLSLPANAVKQIKLRSGKKSLYKCSLGKMGTNFSIRVTDPIDEEKEMIDE 331 Query: 314 FLH 316 +H Sbjct: 332 LVH 334 >gi|24496480|gb|AAN60221.1| FliM [Fervidobacterium sp. YNP] Length = 165 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 5/164 (3%) Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + P +E + S+E V I ++ V L P + Sbjct: 1 AWMSVHPFIPVVE--STETNPQFVQIVPSSEMVLAITFFVSFGKVEGYMSLCWPSSVIEP 58 Query: 209 TTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + K + +E+ I+ + +++ I TL +++TL++G VI Sbjct: 59 IGEKLTTQSWFKVKQKEITEEHIEKLKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVI 118 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + NG+ + + G+ NY ++IT+ I ++ Sbjct: 119 RLKEHYDEPIRVEVNGRTKFLGKPGQYKGNYAVKITEVIEEPKE 162 >gi|312115267|ref|YP_004012863.1| flagellar motor switch protein FliM [Rhodomicrobium vannielii ATCC 17100] gi|311220396|gb|ADP71764.1| flagellar motor switch protein FliM [Rhodomicrobium vannielii ATCC 17100] Length = 314 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 48/309 (15%), Positives = 100/309 (32%), Gaps = 6/309 (1%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M QS T ++ +L + +S+ F+E V Sbjct: 1 MASQSPDAATGAG-VEIIDKLKELSKLSLDRLPVLTSIFEGMALSCCDEFREYCSPAVTA 59 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SG ++ + + W + IG LV ++++ + G +P Sbjct: 60 FVNQIVSGDSWDLLEACSDGVS-VIFYCREWDARIVIGVERRLVFSIVDAMYGGDGSELP 118 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 RS + +E K+ + + + T E + E L + N Sbjct: 119 YEDKRSFTALETKIGRVICEFGARSFTESFRTVGEITLAPERTETA--LDFASLGQHNMM 176 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLN 239 + + + +V ++IPQ LL + + +++ + Sbjct: 177 LIHAQILFQVLDVGGVMFVLIPQNVLLPVRQKLERQRAPMLSSVDPRWTSLLSQRVSRAE 236 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V +D I K+ L + L++G+ + E+ G ++ LGR YT+ Sbjct: 237 VTMDAVILGKEIELGQMFKLEVGKTLELEGTERN-IFFEYEGDRLFRGCLGRERGTYTVT 295 Query: 300 ITDRINFDQ 308 I + ++ Sbjct: 296 IDEALSDID 304 >gi|225872620|ref|YP_002754077.1| putative flagellar motor switch protein FliM [Acidobacterium capsulatum ATCC 51196] gi|225793214|gb|ACO33304.1| putative flagellar motor switch protein FliM [Acidobacterium capsulatum ATCC 51196] Length = 316 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 93/304 (30%), Gaps = 12/304 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 N P + + + + SSL L+ + L + + I Sbjct: 25 QPEADANVRPYN------YSRAGQISREQLRSISSLNDLFARNLGINLGAWLGMQCRIQL 78 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 S + F + + + L + + V ++++ LLG + Sbjct: 79 VSAEQIPFEEFVMRGADLSFIASLRLEPLRAVAILQMELAPVPSMIDALLGGIGQPGEV- 137 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R L+++E+ + + I L+ + S E + E Sbjct: 138 --RELTSIEEAIVAHVVELICRELSSAWQSI-GLSFYFESRQM--QTQMARLLPIKERAL 192 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 ++ + + + + + +P + + SE+ +++V Sbjct: 193 CLSFEIRLPSASGLLHIALPAVVSNTVLRSLRGDLHPQKEHSEETRAKMRGLVKKVSVGT 252 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ + ++++ L+ GQV+ F KT L G ++ R G+ I Sbjct: 253 ALQLAPARIPMRELEGLEAGQVVVFPVTAKTRPELLVAGVPLFQAVPVRSGERRAAHIES 312 Query: 303 RINF 306 Sbjct: 313 LPPE 316 >gi|23007978|ref|ZP_00049614.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 269 Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 71/235 (30%), Gaps = 3/235 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + AR+ G + + K S SG+F + Sbjct: 37 DIRARILEAGGLSLDRLPMLHVVFDRLATACSDAAKHLAASSTFYSLNGIASGRFGEFLD 96 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ N V W + +G + + T++E L G+ P R+ S +E ++A Sbjct: 97 AYDANAVVGIFHAPEWDGHILVGLDRDFLYTMVEVLFGSDGSEPPVEDERNFSAIELRIA 156 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + Q+ L ++ LE ++ + + N Sbjct: 157 QMVFEQVGKALESSFGLVSQTPFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 214 Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 L+IPQ L +S + + A + + NV + + + Sbjct: 215 EMFLVIPQTVLNPLRPALSKVLTGESAARDPHWAEQIAAEVQKTNVRLKAVLEER 269 >gi|306841070|ref|ZP_07473793.1| surface presentation of antigen protein [Brucella sp. BO2] gi|306288908|gb|EFM60211.1| surface presentation of antigen protein [Brucella sp. BO2] Length = 253 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 97/251 (38%), Gaps = 2/251 (0%) Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P +R Sbjct: 2 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDADR 61 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T P ID + + + T + Sbjct: 62 PFGMVEQKIANLLAGHLAGALDRVFNTGSS-QPLFAPGDCIDTADFDRDNFELSRLFTCH 120 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244 + +T L++P+ T + + + ++ + + ++ Sbjct: 121 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 180 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D + Sbjct: 181 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 240 Query: 305 NFDQKSLKNFL 315 N ++ + + Sbjct: 241 NQEEDLIDELV 251 >gi|307293811|ref|ZP_07573655.1| surface presentation of antigens (SPOA) protein [Sphingobium chlorophenolicum L-1] gi|306879962|gb|EFN11179.1| surface presentation of antigens (SPOA) protein [Sphingobium chlorophenolicum L-1] Length = 299 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 79/284 (27%), Gaps = 9/284 (3%) Query: 24 KLGDKKTIEKI--SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81 G+ + + LG + L + + + ++ ++ +F ++ Sbjct: 10 GRGESQAPLMLSGLDRLGEKLGRRLRALIEPIAGVRPHVAVHDARALEFGAWNAEVPDSS 69 Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 L+ + ++ TL++ G + E +L R Sbjct: 70 SIGVYRLAPLKGQVLLRLDATMISTLVDCFYGGIGNRALPPRG-EFTPTEDRLIARISDA 128 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLI 200 A L +C S L + E + ++I + L+ Sbjct: 129 FMARLVECWSDMLTLDAGLIVRET--GVGFAAAAQPGEQMVLQRFMLSISRDAEWPIDLL 186 Query: 201 IPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P L + + + + A + + + T + +L +++ L Sbjct: 187 FPLSALRNVEGLMGARIPIDDERADPIWQARIAARMRDIRLPARTVLARPDLSLAELMQL 246 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 K G VIP L + + +G +I Sbjct: 247 KAGDVIPV--TINRSLPLIVGDRIVAHGTIGEQDGRAAFQIEKI 288 >gi|229058412|ref|ZP_04196796.1| Flagellar motor switch protein [Bacillus cereus AH603] gi|228719921|gb|EEL71511.1| Flagellar motor switch protein [Bacillus cereus AH603] Length = 328 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 91/281 (32%), Gaps = 8/281 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSAVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P ++ ++ +N+NM E ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTPSDIISLLNVNMKTEFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTIGEIEKIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 IP + +GK ++C +G+ G + I Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 >gi|94495436|ref|ZP_01302016.1| flagellar switch protein [Sphingomonas sp. SKA58] gi|94424824|gb|EAT09845.1| flagellar switch protein [Sphingomonas sp. SKA58] Length = 295 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 29/290 (10%), Positives = 76/290 (26%), Gaps = 7/290 (2%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 + LG + + + + + ++ + F+ Sbjct: 10 FGRGELQAPVMLSGLDRLGDKLGRRIRALIEPIAGVRPNVQAQDARVLDFAAWSAQVPSF 69 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 S + + ++ TL++ G + + E +L R Sbjct: 70 TSISLYRILPLKGQMLLRLDAGMISTLVDCFYGGIGNRPLPVRG-EFTPTEDRLIARISE 128 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI-ENVASSFVL 199 + + + + +L + + + +T+ + L Sbjct: 129 TLMVRMVESWADVLPLDASL--ILRETGVGYAAAAQPADQMVLQRFVVTLTRDQEWPIDL 186 Query: 200 IIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 + P L ++ + + AR+ + + T + +L D++ Sbjct: 187 LFPLSALRAVEALTGAKVPADDDQADPVWQGRIARRMRDIRLPARTVLARPNLSLADLME 246 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 LK+G VIP L + + +G +I Sbjct: 247 LKVGDVIPV--TIGRALPLIVGNRIVAHGTIGEQDGRAAFQIEKLAQETD 294 >gi|294013062|ref|YP_003546522.1| flagellar motor switch protein FliM [Sphingobium japonicum UT26S] gi|292676392|dbj|BAI97910.1| flagellar motor switch protein FliM [Sphingobium japonicum UT26S] Length = 294 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 34/283 (12%), Positives = 80/283 (28%), Gaps = 9/283 (3%) Query: 24 KLGDKKTIEKI--SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81 G+ + + LG + L + + + ++ +F H + Sbjct: 10 GRGESQAPLMLSGLDRLGEKLGRRLRALIEPIAGARPHVVAQDARALEFGAWAHEVPGSA 69 Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 L+ + ++ TL++ G + E +L R Sbjct: 70 SIGVYRLAPLKGQVLLRLDAEMISTLVDCFYGGIGNRALPPRG-EFTPTEDRLIARISEA 128 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLI 200 A L +C S L + E + ++I + L+ Sbjct: 129 FIARLVECWSDMLALEAGLIVRET--GIGFAAAAQPGEQMVLQRFLISISRDAEWPIDLL 186 Query: 201 IPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P +L + + + + A++ ++ + T + +L +++ L Sbjct: 187 FPLSSLRAVEPLMGNRIPVDDERADPVWQARIAQRMREIRLPARTVLARPDLSLAELMQL 246 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 K G +IP L + + +G +I Sbjct: 247 KAGDIIPV--TINRSLPLIVGDRIVAHGSIGEQDGRAAFQIEK 287 >gi|300117313|ref|ZP_07055103.1| flagellar motor switch protein FliM [Bacillus cereus SJ1] gi|298725148|gb|EFI65800.1| flagellar motor switch protein FliM [Bacillus cereus SJ1] Length = 328 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +D+ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFSLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|229017049|ref|ZP_04173968.1| Flagellar motor switch protein [Bacillus cereus AH1273] gi|229023230|ref|ZP_04179740.1| Flagellar motor switch protein [Bacillus cereus AH1272] gi|228738024|gb|EEL88510.1| Flagellar motor switch protein [Bacillus cereus AH1272] gi|228744222|gb|EEL94305.1| Flagellar motor switch protein [Bacillus cereus AH1273] Length = 328 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 8/281 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + F +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTFSARMRIPIELEPSAVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E A + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 QQSFESVVAIKPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 IP + +GK ++C +G+ G + I Sbjct: 288 IPLHTKVTDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 >gi|54307255|ref|YP_128275.1| hypothetical protein PBPRA0018 [Photobacterium profundum SS9] gi|46911675|emb|CAG18473.1| Hypothetical protein PBPRA0018 [Photobacterium profundum SS9] Length = 296 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 34/298 (11%), Positives = 90/298 (30%), Gaps = 15/298 (5%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 G ++ I ++ +++ + F + V+ S+ + Sbjct: 14 EVRDFDLASPEHRIGA------LQAIIDNVCKQFERSARQSFHHLLRHPVEFSFDQQDTL 67 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K + K+ ++ + ++S + + L+ +++ N +S Sbjct: 68 KLQDYLQQLKKPCLYREFTVSPHDLHGTVSIDGELLFFMVDLFF--GGNGNNIRRNNDMS 125 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E +L +R + +L + + L+ +N+ + Sbjct: 126 DTELRLVERFFNLALEQFAHGWHSITSWHNHLT---EKNTLRLGNPMQNNQLYQVCRFTI 182 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + F + +P L + +L K Q + + T + Sbjct: 183 DVCGHKGWFEIALPFAGLDFLRDQ--QCKAADIETDPELQAKIQTKICQTPMRLTTTLCE 240 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + L V+ LK G +IP + + A +++ + + ++I I Sbjct: 241 RSLALGKVMDLKTGDIIPVELP--SEVTVRAGKTSLFTARIAEHNASLVLQIQSIIKQ 296 >gi|229011056|ref|ZP_04168250.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048] gi|228750228|gb|EEM00060.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048] Length = 328 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 8/281 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + L R L+ E A + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFLMRRPLTAFEFLTLDNIFALLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 QQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 IP + +GK ++C +G+ G + I Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 >gi|254517014|ref|ZP_05129072.1| Surface presentation of antigens protein [gamma proteobacterium NOR5-3] gi|219674519|gb|EED30887.1| Surface presentation of antigens protein [gamma proteobacterium NOR5-3] Length = 327 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 98/303 (32%), Gaps = 10/303 (3%) Query: 4 QSIHKNTSPLHPI---LLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58 +S+ TS R ++ + + L + L + ++ Sbjct: 17 ESVDDGTSAADAADDGQFRRFDFAAREQSLLREFTALGPLIERQAEMLGVALESGFSIEF 76 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 + + + + + S + + + +SLS + F L+ ++ G Sbjct: 77 TVLAQTPELLSVADAVASLERSVAVTNSSLSPLAGPVFAIAPAELLSFVVNAYFGGGSAA 136 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 SL+ E +LA+R + ++Q + + + S+ Sbjct: 137 PSDSSRSSLTPTELRLAERIAEFQLSSISQAWTDKLALEAGE--LTTLGVPDRLEMLPSS 194 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS-EDLIDPFARKTYQ 237 + + I +++ +S L++P L L + K E + F R+ Sbjct: 195 DMLLRIAFSLSAGEFSSQISLMLPFAALEPYRERFLPPRKKDEVSDGKSWEPFFRRELPG 254 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + + + + L D++ L+ G VIP L+ + + G Sbjct: 255 IELEVAGVLATQSIALADLLQLQAGMVIPIKPP--EEVRLNIDNVTLAEGRYGSFDGVKA 312 Query: 298 IRI 300 +++ Sbjct: 313 VQL 315 >gi|218508217|ref|ZP_03506095.1| flagellar C-ring motor switch protein [Rhizobium etli Brasil 5] Length = 188 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 97/187 (51%) Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E LA +I+ VL ++ P+L + D + +EF INM++T Sbjct: 2 IELDLAVMVFDKIANVLRSAVNAPGGFEPSLSAPHAPDARPRPPEDKPDEFAAAINMSLT 61 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI L+ Sbjct: 62 LAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQ 121 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + Sbjct: 122 DLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDE 181 Query: 310 SLKNFLH 316 +++ ++ Sbjct: 182 LIRHLMN 188 >gi|255026111|ref|ZP_05298097.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J2-003] Length = 300 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 18 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 77 Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I +I + E L G + + R LS E+ K + + Sbjct: 78 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 136 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + SP + + N+ + +++++ E S+ + +P + Sbjct: 137 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 194 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + ++ +Q+ R+ KTT K++ L++G V+ Sbjct: 195 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 254 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + C +G+ G ++ Sbjct: 255 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 288 >gi|152975177|ref|YP_001374694.1| flagellar motor switch protein FliM [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023929|gb|ABS21699.1| flagellar motor switch protein FliM [Bacillus cytotoxicus NVH 391-98] Length = 328 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 90/273 (32%), Gaps = 8/273 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIAASFGKQTSQSLAARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I +I + E LG + R L+ E + + L Sbjct: 111 LGLPELGEIVIEMDLAFIIYIHECWLGGDSKR-DFSIRRPLTAFEFLTLDNVFSILCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+N+ E ++ + IP ++ Sbjct: 170 EQSFESIVAIQPKFVTTETDPN--ALKITTASDIISLLNVNLKTEYWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 S + + K +Q+ I + +K T+ ++ ++ G + Sbjct: 228 EDIMDKLTSENIVEHSSDKRKKYTSEVEAKVHQVYKPIHIALGEQKMTIGELEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 IP + +GK ++C +G+ Sbjct: 288 IPLHTKVTDQLCGYVDGKHKFNCFIGKDKTRKA 320 >gi|206974807|ref|ZP_03235722.1| putative flagellar motor switch protein FliM [Bacillus cereus H3081.97] gi|229195975|ref|ZP_04322728.1| Flagellar motor switch protein [Bacillus cereus m1293] gi|206746826|gb|EDZ58218.1| putative flagellar motor switch protein FliM [Bacillus cereus H3081.97] gi|228587534|gb|EEK45599.1| Flagellar motor switch protein [Bacillus cereus m1293] Length = 328 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +D+ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E A + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLMNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKAL 321 >gi|118477197|ref|YP_894348.1| flagellar motor switch protein FliM [Bacillus thuringiensis str. Al Hakam] gi|225863621|ref|YP_002748999.1| putative flagellar motor switch protein FliM [Bacillus cereus 03BB102] gi|229121315|ref|ZP_04250546.1| Flagellar motor switch protein [Bacillus cereus 95/8201] gi|229183955|ref|ZP_04311170.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1] gi|118416422|gb|ABK84841.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|225786262|gb|ACO26479.1| putative flagellar motor switch protein FliM [Bacillus cereus 03BB102] gi|228599480|gb|EEK57085.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1] gi|228662160|gb|EEL17769.1| Flagellar motor switch protein [Bacillus cereus 95/8201] Length = 328 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|163939573|ref|YP_001644457.1| flagellar motor switch protein FliM [Bacillus weihenstephanensis KBAB4] gi|229166618|ref|ZP_04294370.1| Flagellar motor switch protein [Bacillus cereus AH621] gi|163861770|gb|ABY42829.1| flagellar motor switch protein FliM [Bacillus weihenstephanensis KBAB4] gi|228616872|gb|EEK73945.1| Flagellar motor switch protein [Bacillus cereus AH621] Length = 328 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 8/281 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM E ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + + +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 IP + +GK ++C +G+ G + I Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 >gi|196033337|ref|ZP_03100749.1| putative flagellar motor switch protein FliM [Bacillus cereus W] gi|195993771|gb|EDX57727.1| putative flagellar motor switch protein FliM [Bacillus cereus W] Length = 328 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFTLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|229132591|ref|ZP_04261439.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196] gi|228650823|gb|EEL06810.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196] Length = 328 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 8/281 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM E ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + + +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 IP + +GK ++C +G+ G + I Sbjct: 288 IPLHTKVTDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 >gi|47565432|ref|ZP_00236473.1| flagellar motor switch protein (fliM), putative [Bacillus cereus G9241] gi|47557422|gb|EAL15749.1| flagellar motor switch protein (fliM), putative [Bacillus cereus G9241] Length = 328 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +D+ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E A + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|229029443|ref|ZP_04185526.1| Flagellar motor switch protein [Bacillus cereus AH1271] gi|228731902|gb|EEL82801.1| Flagellar motor switch protein [Bacillus cereus AH1271] Length = 328 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E A + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGFVDGKHKFNCFIGKDGTRKAL 321 >gi|196045129|ref|ZP_03112362.1| putative flagellar motor switch protein FliM [Bacillus cereus 03BB108] gi|196024131|gb|EDX62805.1| putative flagellar motor switch protein FliM [Bacillus cereus 03BB108] Length = 328 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ D+ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGDIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|227876753|ref|ZP_03994862.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35243] gi|269976280|ref|ZP_06183276.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris 28-1] gi|306817700|ref|ZP_07451442.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35239] gi|307699817|ref|ZP_07636868.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16] gi|227842650|gb|EEJ52850.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35243] gi|269935609|gb|EEZ92147.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris 28-1] gi|304649514|gb|EFM46797.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35239] gi|307614855|gb|EFN94073.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16] Length = 307 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 27/307 (8%), Positives = 86/307 (28%), Gaps = 10/307 (3%) Query: 9 NTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 S A+ + + + +I + + ++ + + S Sbjct: 3 KQSKADRAAEAKVYDFSKPMKLPREYARIMELALEAFTRSWINQLVGRLHVVITGSAGDL 62 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + I + + + + +++LLG + I +R Sbjct: 63 VMRSYDDYIAKMPSTTCMVIMDFQNGRNKGILQFPRQTALAWVDHLLGGQGD-IESTPDR 121 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 L+ VE + + ++ L+ + L + + + + Sbjct: 122 QLTEVEVSILSDFLKRVMMDLDMAFAGMLPLETKLLNLEYA--PQFVQAYDGSTPILFAP 179 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL----IDPFARKTYQLNVN 241 + +T +++P + ++ + + + ++ V Sbjct: 180 ITLTTGEHVDDCSIMMPVAMITDAIHKGDANADTRSEEQKREAAIMRQRLVDNLEEIPVE 239 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + R + +K +++ L +G +P +H L + + G G + Sbjct: 240 VAVRFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILAEAAAGTSGSRLAAMVV 299 Query: 302 DRINFDQ 308 ++ Sbjct: 300 SVNKGEK 306 >gi|324325781|gb|ADY21041.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar finitimus YBT-020] Length = 328 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQSLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E A + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|229160725|ref|ZP_04288717.1| Flagellar motor switch protein [Bacillus cereus R309803] gi|228622740|gb|EEK79574.1| Flagellar motor switch protein [Bacillus cereus R309803] Length = 328 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 95/274 (34%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQALSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L + VI + E LG + R L+ E A I L Sbjct: 111 LGLPELGEIVVEIDLAFVIYIHECWLGGDSKR-TFTMRRPLTAFEFLTLDNIFALICKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S S ++ + K QL + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKRYTSEVEVKVNQLYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDQLLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|229155334|ref|ZP_04283444.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342] gi|228628049|gb|EEK84766.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342] Length = 328 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM E ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|196039000|ref|ZP_03106307.1| putative flagellar motor switch protein FliM [Bacillus cereus NVH0597-99] gi|301053301|ref|YP_003791512.1| flagellar motor switch protein [Bacillus anthracis CI] gi|196030145|gb|EDX68745.1| putative flagellar motor switch protein FliM [Bacillus cereus NVH0597-99] gi|300375470|gb|ADK04374.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] Length = 328 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + I +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELIGYVDGKHKFNCFIGKDGTRKAL 321 >gi|47091661|ref|ZP_00229457.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 4b H7858] gi|47019980|gb|EAL10717.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 4b H7858] gi|328467265|gb|EGF38345.1| flagellar motor switch protein FliM [Listeria monocytogenes 1816] Length = 330 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I +I + E L G + + R LS E+ K + + Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + SP + + N+ + +++++ E S+ + +P + Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + ++ +Q+ R+ KTT K++ L++G V+ Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEACIRVGEIKTTWKELNKLEVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + C +G+ G ++ Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|49477321|ref|YP_035882.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218902877|ref|YP_002450711.1| putative flagellar motor switch protein FliM [Bacillus cereus AH820] gi|228914341|ref|ZP_04077956.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926799|ref|ZP_04089867.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933047|ref|ZP_04095910.1| Flagellar motor switch protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228984848|ref|ZP_04145018.1| Flagellar motor switch protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090726|ref|ZP_04221959.1| Flagellar motor switch protein [Bacillus cereus Rock3-42] gi|254723848|ref|ZP_05185634.1| flagellar motor switch protein FliM [Bacillus anthracis str. A1055] gi|49328877|gb|AAT59523.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218538906|gb|ACK91304.1| putative flagellar motor switch protein FliM [Bacillus cereus AH820] gi|228692668|gb|EEL46394.1| Flagellar motor switch protein [Bacillus cereus Rock3-42] gi|228774798|gb|EEM23194.1| Flagellar motor switch protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228826648|gb|EEM72419.1| Flagellar motor switch protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832912|gb|EEM78481.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845335|gb|EEM90371.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 328 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|46906950|ref|YP_013339.1| flagellar motor switch protein FliM [Listeria monocytogenes serotype 4b str. F2365] gi|217965203|ref|YP_002350881.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|226223330|ref|YP_002757437.1| flagellar switch protein FliM [Listeria monocytogenes Clip81459] gi|254824021|ref|ZP_05229022.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J1-194] gi|254853097|ref|ZP_05242445.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL R2-503] gi|254932021|ref|ZP_05265380.1| flagellar motor switch protein FliM [Listeria monocytogenes HPB2262] gi|254994391|ref|ZP_05276581.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J2-064] gi|290893996|ref|ZP_06556971.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J2-071] gi|300764511|ref|ZP_07074504.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL N1-017] gi|46880216|gb|AAT03516.1| flagellar motor switch protein FliM [Listeria monocytogenes serotype 4b str. F2365] gi|217334473|gb|ACK40267.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|225875792|emb|CAS04495.1| Putative flagellar switch protein FliM [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606446|gb|EEW19054.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL R2-503] gi|290556442|gb|EFD89981.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J2-071] gi|293583573|gb|EFF95605.1| flagellar motor switch protein FliM [Listeria monocytogenes HPB2262] gi|293593249|gb|EFG01010.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J1-194] gi|300514865|gb|EFK41919.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL N1-017] gi|307570238|emb|CAR83417.1| fliM [Listeria monocytogenes L99] gi|313610117|gb|EFR85440.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL F2-208] gi|332311124|gb|EGJ24219.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 330 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I +I + E L G + + R LS E+ K + + Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + SP + + N+ + +++++ E S+ + +P + Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + ++ +Q+ R+ KTT K++ L++G V+ Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + C +G+ G ++ Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|16802741|ref|NP_464226.1| flagellar motor switch protein FliM [Listeria monocytogenes EGD-e] gi|47095265|ref|ZP_00232876.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 1/2a F6854] gi|224498781|ref|ZP_03667130.1| flagellar motor switch protein FliM [Listeria monocytogenes Finland 1988] gi|224501996|ref|ZP_03670303.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL R2-561] gi|254829356|ref|ZP_05234043.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL N3-165] gi|254830310|ref|ZP_05234965.1| flagellar motor switch protein FliM [Listeria monocytogenes 10403S] gi|254900065|ref|ZP_05259989.1| flagellar motor switch protein FliM [Listeria monocytogenes J0161] gi|254911382|ref|ZP_05261394.1| flagellar motor switch protein FliM [Listeria monocytogenes J2818] gi|254935709|ref|ZP_05267406.1| flagellar motor switch protein FliM [Listeria monocytogenes F6900] gi|284801029|ref|YP_003412894.1| flagellar motor switch protein FliM [Listeria monocytogenes 08-5578] gi|284994171|ref|YP_003415939.1| flagellar motor switch protein FliM [Listeria monocytogenes 08-5923] gi|315281360|ref|ZP_07870000.1| flagellar motor switch protein FliM [Listeria marthii FSL S4-120] gi|16410088|emb|CAC98777.1| lmo0699 [Listeria monocytogenes EGD-e] gi|47016336|gb|EAL07258.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 1/2a F6854] gi|258601769|gb|EEW15094.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL N3-165] gi|258608292|gb|EEW20900.1| flagellar motor switch protein FliM [Listeria monocytogenes F6900] gi|284056591|gb|ADB67532.1| flagellar motor switch protein FliM [Listeria monocytogenes 08-5578] gi|284059638|gb|ADB70577.1| flagellar motor switch protein FliM [Listeria monocytogenes 08-5923] gi|293589319|gb|EFF97653.1| flagellar motor switch protein FliM [Listeria monocytogenes J2818] gi|313614999|gb|EFR88503.1| flagellar motor switch protein FliM [Listeria marthii FSL S4-120] Length = 330 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I +I + E L G + + R LS E+ K + + Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + SP + + N+ + +++++ E S+ + +P + Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + ++ +Q+ R+ KTT K++ L++G V+ Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + C +G+ G ++ Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|42780856|ref|NP_978103.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 10987] gi|217959246|ref|YP_002337794.1| flagellar motor switch protein FliM [Bacillus cereus AH187] gi|222095386|ref|YP_002529446.1| flagellar motor switch protein flim [Bacillus cereus Q1] gi|229138463|ref|ZP_04267052.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26] gi|42736776|gb|AAS40711.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 10987] gi|217068243|gb|ACJ82493.1| putative flagellar motor switch protein FliM [Bacillus cereus AH187] gi|221239444|gb|ACM12154.1| flagellar motor switch protein FliM [Bacillus cereus Q1] gi|228645000|gb|EEL01243.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26] Length = 328 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +D+ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E A + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGFVDGKHKFNCFIGKDGTRKAL 321 >gi|52143697|ref|YP_083133.1| flagellar motor switch protein FliM [Bacillus cereus E33L] gi|228945366|ref|ZP_04107721.1| Flagellar motor switch protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|51977166|gb|AAU18716.1| flagellar motor switch protein M [Bacillus cereus E33L] gi|228814338|gb|EEM60604.1| Flagellar motor switch protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 328 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLRTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|229096248|ref|ZP_04227221.1| Flagellar motor switch protein [Bacillus cereus Rock3-29] gi|229115203|ref|ZP_04244613.1| Flagellar motor switch protein [Bacillus cereus Rock1-3] gi|228668343|gb|EEL23775.1| Flagellar motor switch protein [Bacillus cereus Rock1-3] gi|228687208|gb|EEL41113.1| Flagellar motor switch protein [Bacillus cereus Rock3-29] Length = 328 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ D+ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMSDIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|228920473|ref|ZP_04083818.1| Flagellar motor switch protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229069314|ref|ZP_04202604.1| Flagellar motor switch protein [Bacillus cereus F65185] gi|229109219|ref|ZP_04238818.1| Flagellar motor switch protein [Bacillus cereus Rock1-15] gi|229178171|ref|ZP_04305542.1| Flagellar motor switch protein [Bacillus cereus 172560W] gi|228605301|gb|EEK62751.1| Flagellar motor switch protein [Bacillus cereus 172560W] gi|228674229|gb|EEL29474.1| Flagellar motor switch protein [Bacillus cereus Rock1-15] gi|228713801|gb|EEL65686.1| Flagellar motor switch protein [Bacillus cereus F65185] gi|228839103|gb|EEM84399.1| Flagellar motor switch protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 328 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEMKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|284041533|ref|YP_003391873.1| surface presentation of antigens (SPOA) protein [Conexibacter woesei DSM 14684] gi|283945754|gb|ADB48498.1| surface presentation of antigens (SPOA) protein [Conexibacter woesei DSM 14684] Length = 322 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 97/291 (33%), Gaps = 10/291 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + + T ++ I + + + ++ + +++ + +S Sbjct: 38 VDFARPTKFT--SEQERRIVRTLDM----FCQTAAARLTAELRVPLELEVINTTQLTWSA 91 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 + + ++ + + V+ +E LLG + E P+ R LS ++ Sbjct: 92 AQQQLPPASLGTPLEVAPHDTRMLMTAELPFVLMAIEYLLGGAPERPPR--QRKLSEIDW 149 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L+KR ++ L+ + L +++ +E TI + I Sbjct: 150 VLSKRLFETLTTQLSIVWQDLAGQT--LAAQEVDSHVEGMQVAAISEPTLTITLESRINR 207 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 +S+ L+IP ++ ++ +V + + + Sbjct: 208 HSSTLALLIPWVSIDPVADQIAGRDLRTRADDPRAAALVQAALSGAHVTMRAEVGSVEMA 267 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + DV+ L G ++ ++ A I+ + GR G ++I DR Sbjct: 268 IDDVLGLAPGDLVKLSSLAADGVVVYAEDVPIHHAQPGRSGARRAVQIVDR 318 >gi|229189861|ref|ZP_04316871.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876] gi|228593535|gb|EEK51344.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876] Length = 328 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM E ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGQQKMTMSEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|262273545|ref|ZP_06051359.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] gi|262222523|gb|EEY73834.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] Length = 296 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 33/298 (11%), Positives = 93/298 (31%), Gaps = 16/298 (5%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P LT + ++ ++ + F+ + V+ +Y + Sbjct: 15 DVRPYD------LTSPEHRIGAVLATIDNVCKQFETLAKQAFQHILRCPVEFTYQQQHTE 68 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + E ++ + ++S N + L L++ G + +S Sbjct: 69 TLQDHLKAMGEQSLYREFTVSPHHFNGVLVIEKELQFLLVDLFFGGKGIVKARTT---IS 125 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E ++ R Q+ + L + L R ++ M Sbjct: 126 DTEWRMMARFFGQMLDQYAIAWQSVSPWQCQL---QPKENLDLENTRQDSQLHQICRFTM 182 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + + +P L + + + +L + + + + + Sbjct: 183 NVCGHQGWIDISLPLNGLDFLRH--RHATDDDAATAPELQHIVNATLKKAPIRLLSTLCE 240 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ +L D++ LK+G VIP ++ A +++ ++ +++ + I Sbjct: 241 RQLSLGDIMALKVGDVIPVELP--GEVVVRAGRTPLFTAKVAEQNATLVLQVQNVIEQ 296 >gi|228952146|ref|ZP_04114238.1| Flagellar motor switch protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|46019719|emb|CAG25464.1| FliM protein [Bacillus thuringiensis serovar alesti] gi|228807500|gb|EEM54027.1| Flagellar motor switch protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 328 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYMSEVEMKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|213419486|ref|ZP_03352552.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 153 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 1/154 (0%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 DI+ + + + + + L + S +LV ++NL G Sbjct: 1 DITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRF 60 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R + E+++ R + + + N N Sbjct: 61 PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPN 119 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + V ++ I N+ F + +P + + Sbjct: 120 DIVVNTPFHVEIGNLTGEFNICLPFSMIEPLREL 153 >gi|30019808|ref|NP_831439.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 14579] gi|206970515|ref|ZP_03231467.1| putative flagellar motor switch protein FliM [Bacillus cereus AH1134] gi|218233573|ref|YP_002366448.1| flagellar motor switch protein FliM [Bacillus cereus B4264] gi|228958044|ref|ZP_04119779.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|229102362|ref|ZP_04233070.1| Flagellar motor switch protein [Bacillus cereus Rock3-28] gi|229127090|ref|ZP_04256087.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4] gi|229144376|ref|ZP_04272781.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24] gi|229149968|ref|ZP_04278194.1| Flagellar motor switch protein [Bacillus cereus m1550] gi|29895353|gb|AAP08640.1| Flagellar motor switch protein fliM [Bacillus cereus ATCC 14579] gi|206734151|gb|EDZ51321.1| putative flagellar motor switch protein FliM [Bacillus cereus AH1134] gi|218161530|gb|ACK61522.1| putative flagellar motor switch protein FliM [Bacillus cereus B4264] gi|228633490|gb|EEK90093.1| Flagellar motor switch protein [Bacillus cereus m1550] gi|228639007|gb|EEK95432.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24] gi|228656206|gb|EEL12047.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4] gi|228681009|gb|EEL35178.1| Flagellar motor switch protein [Bacillus cereus Rock3-28] gi|228801561|gb|EEM48443.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 328 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|75763360|ref|ZP_00743098.1| Flagellar motor switch protein fliM [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896697|ref|YP_002445108.1| putative flagellar motor switch protein FliM [Bacillus cereus G9842] gi|228900345|ref|ZP_04064574.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222] gi|228907396|ref|ZP_04071254.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200] gi|228938876|ref|ZP_04101476.1| Flagellar motor switch protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228964747|ref|ZP_04125854.1| Flagellar motor switch protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228971757|ref|ZP_04132378.1| Flagellar motor switch protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978366|ref|ZP_04138743.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407] gi|229043519|ref|ZP_04191228.1| Flagellar motor switch protein [Bacillus cereus AH676] gi|74489151|gb|EAO52629.1| Flagellar motor switch protein fliM [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542394|gb|ACK94788.1| putative flagellar motor switch protein FliM [Bacillus cereus G9842] gi|228725741|gb|EEL76989.1| Flagellar motor switch protein [Bacillus cereus AH676] gi|228781383|gb|EEM29584.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407] gi|228787847|gb|EEM35805.1| Flagellar motor switch protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794997|gb|EEM42496.1| Flagellar motor switch protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228820725|gb|EEM66750.1| Flagellar motor switch protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228852257|gb|EEM97053.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200] gi|228859232|gb|EEN03663.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222] gi|326939376|gb|AEA15272.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar chinensis CT-43] Length = 328 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRRKYTSEVEVKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|315301944|ref|ZP_07872945.1| flagellar motor switch protein FliM [Listeria ivanovii FSL F6-596] gi|313629686|gb|EFR97818.1| flagellar motor switch protein FliM [Listeria ivanovii FSL F6-596] Length = 330 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 6/274 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTVASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I VI + E L G + + R LS E+ K + + Sbjct: 108 DLGDPELGQIIIELDLAYVIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + + P + N+ + +N+++ E S+ + +P + Sbjct: 167 LKESFKSVHPIEPEIVSVET--NPALIRVTSPNDMMALVNVDIKSEFWISTMRIGVPFFS 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + ++ +Q+ R+ KTT K++ L++G V+ Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + C +G+ G ++ Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|229078945|ref|ZP_04211497.1| Flagellar motor switch protein [Bacillus cereus Rock4-2] gi|228704359|gb|EEL56793.1| Flagellar motor switch protein [Bacillus cereus Rock4-2] Length = 328 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM E ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEIKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|328475661|gb|EGF46410.1| flagellar motor switch protein FliM [Listeria monocytogenes 220] Length = 330 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTIASAFTKKDMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I +I + E L G + + R LS E+ K + + Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + SP + + N+ + +++++ E S+ + +P + Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + ++ +Q+ R+ KTT K++ L++G V+ Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + C +G+ G ++ Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|229172409|ref|ZP_04299968.1| Flagellar motor switch protein [Bacillus cereus MM3] gi|228610880|gb|EEK68143.1| Flagellar motor switch protein [Bacillus cereus MM3] Length = 328 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLAARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM E ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWDTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I ++ T+ ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQRMTMGEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|323139660|ref|ZP_08074702.1| surface presentation of antigens (SPOA) protein [Methylocystis sp. ATCC 49242] gi|322395092|gb|EFX97651.1| surface presentation of antigens (SPOA) protein [Methylocystis sp. ATCC 49242] Length = 314 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 94/286 (32%), Gaps = 3/286 (1%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 + + + +E ++ V +S + + + + + Sbjct: 29 RMPALTLIFEETAANFTRALEEFTNIPVALSLEDLDAKRVGDLQEHCEGLSSILVYDANG 88 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 S+ F + + +E LLG+ +R+ S VE +L + ++ L + Sbjct: 89 LSAKFAVAVDSGFRDMAVEMLLGSGVVERSDKTDRAASRVEARLVNFAVNRLLNRLAAAL 148 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + E E + +++P+ L Sbjct: 149 APVAEVQ--FEQDMLASEAGYGAVGQRGAVAIACRFRLKSLEHEGLVAIVLPRAALDPYR 206 Query: 211 LISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + E + + V ++ +I + TL+D+ L++G V+ Sbjct: 207 TALSRFPGAEGVARDERWSENLYDNIVRTEVAVNVKIEARGFTLEDIANLEVGDVLGLPI 266 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + + + G+ ++ C LG+ +YT+R+ D + Q ++N L Sbjct: 267 APTSPIRIESEGRTLFWCTLGQKDGHYTVRLEDFSDERQSFIENIL 312 >gi|16799782|ref|NP_470050.1| flagellar motor switch protein FliM [Listeria innocua Clip11262] gi|16413159|emb|CAC95939.1| lin0707 [Listeria innocua Clip11262] gi|313624714|gb|EFR94669.1| flagellar motor switch protein FliM [Listeria innocua FSL J1-023] Length = 330 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I +I + E L G + + R LS E+ K + + Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + SP + + N+ + +++++ E S+ + +P + Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + ++ +Q+ R+ KTT K++ L++G V+ Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + C +G+ G ++ Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|313620068|gb|EFR91581.1| flagellar motor switch protein FliM [Listeria innocua FSL S4-378] Length = 330 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I +I + E L G + + R LS E+ K + + Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + SP + + N+ + +++++ E S+ + +P + Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + ++ +Q+ R+ KTT K++ L++G V+ Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + C +G+ G ++ Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|289433977|ref|YP_003463849.1| flagellar motor switch protein FliM [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170221|emb|CBH26761.1| flagellar motor switch protein FliM [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313634376|gb|EFS00971.1| flagellar motor switch protein FliM [Listeria seeligeri FSL N1-067] gi|313639061|gb|EFS04048.1| flagellar motor switch protein FliM [Listeria seeligeri FSL S4-171] Length = 330 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTVASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I VI + E L G + + R LS E+ K + + Sbjct: 108 DLGDPELGQIIIELDLAYVIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + + +P + N+ + +N+++ E S+ + +P + Sbjct: 167 LKESFKSVHPIAPEIVSVET--NPALIRVTSPNDMMALVNVDIKSEFWISTMRIGVPFFS 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + ++ +Q+ R+ KTT K++ L++G V+ Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + C +G+ G ++ Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|319403952|emb|CBI77540.1| Flagellar motor switch protein FliM [Bartonella rochalimae ATCC BAA-1498] Length = 322 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 91/289 (31%), Gaps = 3/289 (1%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 L + G + L L S + K I Sbjct: 21 DALTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLSNYTSLKFTTDVQSLDTLKADQIT 80 Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + + + W ++ LV E GAS + R S +E K+ Sbjct: 81 QAIGTEALLVYFNSDRWGNDVIFVLDATLVELATEVFFGASEPMVTNRNGRPFSPIESKV 140 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 ++ L+ L + N + + + + + V Sbjct: 141 GATFGKLLAYALDGVFG--IGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGEVE 198 Query: 195 SSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + +++P+ + + ++ ++ + V I+ I TL Sbjct: 199 TYVNILMPRTCHRPIQEAVTRALRAPAKRTDPLWAKRLKQEVSRSRVRIEAFIQQGSMTL 258 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ TLK+GQ++P L + K +Y C LG++G +++IR+T+ Sbjct: 259 NELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIRVTN 307 >gi|86157791|ref|YP_464576.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-C] gi|85774302|gb|ABC81139.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-C] Length = 334 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 85/305 (27%), Gaps = 12/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S +P R+ ++ L + L + IS Sbjct: 29 SSRAQVAPYDLTSQDRIIRGQ------MPTLDAINEQVASMLGIGLAGRTRLALRISSAP 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 KF+ + L + L LL LG P+ Sbjct: 83 ATLLKFADLAPLLAPPASVCILGLGASYGFALAVLEAGLAEALLAAALGDRRVRQPEEGG 142 Query: 125 ---RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 R L++VE+ + +R + ++ + Q + P E + + + Sbjct: 143 DTRRELTSVEQLVLRRLLRLLADAMTQAWAPVLPFEP--EVLRLEPDPRMASIAPPTDVG 200 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 + + L+IP + S + S+ E D AR+ Q+ V Sbjct: 201 IVSGFELK-GGIEGRLHLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVE 259 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 I + ++ L G+V+ E + G+E G + + + Sbjct: 260 IRGLYGRARIPFARLLELAEGEVLLLDTDEGRPVPVVVQGREKLLGTPTVSGGSLALVVD 319 Query: 302 DRINF 306 + Sbjct: 320 QPLRP 324 >gi|296502364|ref|YP_003664064.1| flagellar motor switch protein FliM [Bacillus thuringiensis BMB171] gi|296323416|gb|ADH06344.1| flagellar motor switch protein FliM [Bacillus thuringiensis BMB171] Length = 328 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 35/274 (12%), Positives = 91/274 (33%), Gaps = 8/274 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P +++ ++ +N+NM + ++ + IP ++ Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227 Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S + + K Q+ + I +K + ++ ++ G + Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMRMSEIEQIEEGDI 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 IP + + +GK ++C +G+ G + Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|197122895|ref|YP_002134846.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K] gi|220917687|ref|YP_002492991.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-1] gi|196172744|gb|ACG73717.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K] gi|219955541|gb|ACL65925.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-1] Length = 338 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 84/305 (27%), Gaps = 12/305 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S +P R+ ++ L + + I+ Sbjct: 33 SSRAQVAPYDLTSQDRIIRGQ------MPTLDAINEQVASMLGIGLAGRTRQALRITSAP 86 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 KF+ + L + L LL LG P+ Sbjct: 87 ATLLKFADLAPLLAPPASVCILGLGASYGFALAVLEAGLAEALLAAALGDRRVRQPEEGG 146 Query: 125 ---RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 R L++VE+ + +R + ++ + Q + P E + + + Sbjct: 147 DTRRELTSVEQLVLRRLLRLLAEAMTQAWAPVLPFEP--EVLRLEPDPRMASIASPTDVG 204 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 + + L+IP + S + S+ E D AR+ Q+ V Sbjct: 205 IVSGFELK-GGIEGRLHLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVE 263 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 I + ++ L G+V+ E + G+E G + + + Sbjct: 264 IRGLYGRARIPFARLLELAEGEVLLLDTDEGRPVPVVVQGREKLLGTPTVSGGSLALVVD 323 Query: 302 DRINF 306 + Sbjct: 324 QPLRP 328 >gi|225159021|ref|ZP_03725331.1| flagellar motor switch protein FliM [Opitutaceae bacterium TAV2] gi|224802400|gb|EEG20662.1| flagellar motor switch protein FliM [Opitutaceae bacterium TAV2] Length = 344 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 26/288 (9%), Positives = 88/288 (30%), Gaps = 5/288 (1%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 + + + L + + L + ++ T + S Sbjct: 57 DFRNPVFLSEVELRRLRLLHDEFIRHLGSRIALFLRMECTFRMTRLTTLTHVKFTESLPA 116 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + L +T+++ +LG +R L+ +E L + + Sbjct: 117 PSHICLFKADPLPGIGVLTINPRLALTIVDRMLGGRG--HSVTADRHLTEIEIALLEDML 174 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + E P + + + + + +++ + + L Sbjct: 175 TLLLEEWCIQWKAGPELHPQIVG--HENNGCFLQTSARDAVMLVLALDVNFGDCTGALNL 232 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ-LNVNIDTRINLKKTTLKDVVT 258 +P + + +++ + + Y+ + + + + + +L+++ + Sbjct: 233 AVPYYMIETVVRDLQACRHQDNAPAARPDATGWKPVYEHIALPVRAEWPVFEASLREIAS 292 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L++G V+ + G E ++ +G G ++I ++ Sbjct: 293 LRVGDVLELPAGILDDTRVLLAGAEKFTGTVGVEGDRVAVKINRKLPT 340 >gi|88704280|ref|ZP_01101994.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71] gi|88701331|gb|EAQ98436.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71] Length = 327 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 30/268 (11%), Positives = 86/268 (32%), Gaps = 5/268 (1%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 L + + L + + ++ + + + + S + S +LS + Sbjct: 52 ALGPLVERHAEALGEALESGFSIEFTVRGDTPSLLTVADAVASLERTVAVSTTTLSPLAG 111 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 F +L+ ++ G + +L+ E +LA+R + + Sbjct: 112 PVFAIAPADLLSFVVNAYFGGGSGGPAESARSNLTPTELRLAERIAEFQLSSMINSWVDK 171 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI- 212 + + + ++E + I ++ + +S+ +++P L Sbjct: 172 LPLEAGEIN--TLGMPDRLEMLPASEMLLRIAFTLSAGDFSSALSVMLPFAALEPYRERF 229 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + + + F R+ + + + + + L D++ L+ G VIP Sbjct: 230 APPRKQDDVFEGQTWEPFFRRELPGIELEVAGVLATQSIALADLLELEAGAVIPLA--PA 287 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300 L + + G +++ Sbjct: 288 EQVSLKVDNVTLAEGRYGSFDGVKAVQL 315 >gi|322432979|ref|YP_004210228.1| flagellar motor switch protein FliM [Acidobacterium sp. MP5ACTX9] gi|321165206|gb|ADW70910.1| flagellar motor switch protein FliM [Acidobacterium sp. MP5ACTX9] Length = 321 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 37/308 (12%), Positives = 98/308 (31%), Gaps = 6/308 (1%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 ++G+S S +L + +++ + L + +++ Sbjct: 4 IQGKSSPHAMSANSTVLPCNFRSAGRLSNESARTLTTVHETLARNLTNSLDVYLGTGLEV 63 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + S S+ + ++L+ T+++ LLG S + Sbjct: 64 RLIHLEQFSMEDFKATCMSAAYMLPCSAKPSSNTLLLEMDSSLMFTVIDLLLGGSGKNPE 123 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R L+ +++++ + + I+ + + L + + E Sbjct: 124 --SARELTEIDEEIMEGVGSLIAQQIERAWQPVG---FVLTPGKCVKPNLAHRVFPPTEK 178 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 V I+ +++ V + + I S K+ + ++ Sbjct: 179 VLRIHFEVSVAGVTGALYIAFQASMASHLVRNIRADSTGKTGGVVYMPLPKLQKRILDCQ 238 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + I K ++D+ +++G V+ L+ GK Y R G N ++ Sbjct: 239 FALSGDIPNLKVPVRDLARIEVGSVLMLSAPVSMPGKLTLEGKTYYEALPVRQGNNKAMQ 298 Query: 300 ITDRINFD 307 + + I+ Sbjct: 299 LMNAIHSK 306 >gi|289806356|ref|ZP_06536985.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 154 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 1/154 (0%) Query: 50 FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109 + DI+ + + + + + L + S +LV ++ Sbjct: 2 IFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVD 61 Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169 NL G ++ R + E+++ R + + + Sbjct: 62 NLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVK 120 Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 N N+ V ++ I N+ F + +P Sbjct: 121 FTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPF 154 >gi|319406968|emb|CBI80605.1| Flagellar motor switch protein FliM [Bartonella sp. 1-1C] Length = 322 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 91/289 (31%), Gaps = 3/289 (1%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 L + G + L L S + K I Sbjct: 21 DALTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLSNYTSLKFMTDVQSLDTLKAEQIT 80 Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + + + W ++ LV E GAS I R S +E K+ Sbjct: 81 QAIGTEALLVYFNSDRWGNDVIFVLDATLVELATEVFFGASEPMITNRNGRPFSPIESKV 140 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 ++ L+ L + N + + + + + V Sbjct: 141 GATFGKLLAYALDGVFG--IGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGEVE 198 Query: 195 SSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + +++P+ + + ++ ++ + V I+ I TL Sbjct: 199 THVNILMPRSCHRPIQEAVTRALRAPAKRTDPLWAKRLKQEVSRSRVRIEAFIQQGSMTL 258 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ TLK+GQ++P L + K +Y C LG++G +++IR+T+ Sbjct: 259 NELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIRVTN 307 >gi|116872088|ref|YP_848869.1| flagellar motor switch protein FliM [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740966|emb|CAK20086.1| flagellar motor switch protein FliM [Listeria welshimeri serovar 6b str. SLCC5334] Length = 330 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTIASAFTKKSMEFISQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I +I + E L G + + R LS E+ K + + Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSNLEKFCEA 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + SP + + N+ + +++++ E S+ + +P + Sbjct: 167 LRDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + ++ + ++ +Q+ R+ KTT K++ L++G V+ Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + C +G+ G ++ Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|114794453|pdb|2HP7|A Chain A, Structure Of Flim Provides Insight Into Assembly Of The Switch Complex In The Bacterial Flagella Motor Length = 183 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 6/185 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + + + + L ++ VD+ S + I S + Sbjct: 5 SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLTYEEFIRSVMIPSFIVIFT 63 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + +L T+L+ ++G E P NR + +E + ++ + + +L Sbjct: 64 GDVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTEIETSIMRKEVTNMLTLLA 120 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 Q S Q P++E+ + NE V + +++ S + P L Sbjct: 121 QAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFSLLE 178 Query: 208 KTTLI 212 Sbjct: 179 PLLEK 183 >gi|298346003|ref|YP_003718690.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 43063] gi|304390239|ref|ZP_07372193.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654591|ref|ZP_07907497.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 51333] gi|315657504|ref|ZP_07910386.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236064|gb|ADI67196.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 43063] gi|304326721|gb|EFL93965.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491055|gb|EFU80674.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 51333] gi|315491976|gb|EFU81585.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 306 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 23/297 (7%), Positives = 81/297 (27%), Gaps = 6/297 (2%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 + + + + +I + + ++ + + + I Sbjct: 12 DARVYDFSKPMKLPREYARIMEMALEAFTRHWVNQLVGRLHVVITGEVGDLSMRSYDDYI 71 Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + + + + + +++LLG + + +R L+ VE + Sbjct: 72 KTLPNQTLMVIIDFQGGRNKGVLQFPRQTALAWVDHLLGGTGDV-ESTPDRELTEVEVSV 130 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 + ++ A L+ + + + V + +T Sbjct: 131 LIDFLKRVLADLDIAFQSMLPLDSQFRTIEYA--PQFVQVVDGSTPVLFAPITLTAGEHL 188 Query: 195 SSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 +++P + + + + + ++ + + + + R + Sbjct: 189 DDCSIMMPVSMITDAIHQGDVHDTRTEQQKAEAAAVRQHLVDTLEDVPIGVAVRFTPRNV 248 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +++ L IG +P +H L + G G + ++ Sbjct: 249 NPRELDGLAIGDTLPLIHPTSRPLDLVVGDLILAETAAGTSGSRLAAMVVSVNKGEK 305 >gi|300975540|ref|ZP_07173051.1| flagellar motor switch protein FliM [Escherichia coli MS 45-1] gi|301050694|ref|ZP_07197555.1| flagellar motor switch protein FliM [Escherichia coli MS 185-1] gi|300297617|gb|EFJ54002.1| flagellar motor switch protein FliM [Escherichia coli MS 185-1] gi|300410309|gb|EFJ93847.1| flagellar motor switch protein FliM [Escherichia coli MS 45-1] Length = 178 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 4/170 (2%) Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 + + + N N+ V ++ I N+ F Sbjct: 1 MLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEF 59 Query: 198 VLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + +P + + ++ + S N+ ++ D R+ + + L + Sbjct: 60 NICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQI 119 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + LK G V+P I +G + + + G + Y +RI IN Sbjct: 120 LKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 167 >gi|119503672|ref|ZP_01625755.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] gi|119460734|gb|EAW41826.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] Length = 323 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 101/295 (34%), Gaps = 10/295 (3%) Query: 13 LHPILLARLTGKLGDKKTIEKISSS--LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70 G+ T+ K S L + + L + I + + Sbjct: 29 FDDGQFKSHDFGAGEALTLSKWSELDGLLRAHAEVLQGVLLRNFGQQATIEPFAPLFARV 88 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +I + + + + + + L+ G S P+L + ++ Sbjct: 89 GDLIPAMSDRIALITTEIKPLEGESHLEFPGDFLSFLVNQYFGGSTVASPKLAGK-VTPS 147 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 E++L+++ + L + S P D Y + + ++ + ++ Sbjct: 148 EQRLSEQLAKDVLRTLVEVWSDRLALEP--GDLYVDITTDRLSLLPADMGYVVLTYSVAC 205 Query: 191 E-NVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + F L++P E+ L L+ + + +++V + ++ Sbjct: 206 GSDYQGEFRLLLPYESMALQAPRLMPARREEPEVVVEPEWEARLQSAVPEIDVELCGVVS 265 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L +T+L++++ K+G VIP A L G+ I + G + ++ITD Sbjct: 266 LLETSLRNLLAFKVGTVIPIDEP--QTAQLMVEGRGIARGKYGAHDSSRAVQITD 318 >gi|90418398|ref|ZP_01226310.1| possible flagellar motor switch protein fliM [Aurantimonas manganoxydans SI85-9A1] gi|90338070|gb|EAS51721.1| possible flagellar motor switch protein fliM [Aurantimonas manganoxydans SI85-9A1] Length = 348 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 31/302 (10%), Positives = 98/302 (32%), Gaps = 3/302 (0%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 + RL + + + +D++ +S + Sbjct: 48 DVGERLRNAAEFEPRRLPRLKHMAETWAASAATKISAIAGASLDLTLREVESDFGPELDE 107 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + + +++ S + S + + + L+ L A + +++ + Sbjct: 108 AEDDGTMYAPLSSPRFRSPGYAMLDHEALEALISALFAAEPSPPGTPPRTP-TDLDRSIV 166 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 K +A I+ E ++ + + L + + ++T+ ++++ Sbjct: 167 KLGLATIADSALSVFEMIGELRLSVGNIINAAELGE-QLAGETDRFILFRFDLTVASLST 225 Query: 196 SFVLIIPQETLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 + +P + + ++ E + + ++ + + KK L Sbjct: 226 TITFALPGALFAPHLRFLREPPKMPPPDREESWSNAIKESFAKSDLRLSAIVTKKKIDLG 285 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +G IP + + + ++ +GR +Y +RI +RI+ ++ + + Sbjct: 286 TIAGFAVGDTIPLDVSANSLIAIECEDQPLFRAHMGRSRDSYVVRIEERIDPAEEFIDDI 345 Query: 315 LH 316 L Sbjct: 346 LS 347 >gi|320107039|ref|YP_004182629.1| flagellar motor switch protein FliM [Terriglobus saanensis SP1PR4] gi|319925560|gb|ADV82635.1| flagellar motor switch protein FliM [Terriglobus saanensis SP1PR4] Length = 326 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 88/271 (32%), Gaps = 6/271 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 + ++ + + L + + + + FS + + E + L Sbjct: 28 EQLRALHNMQDQFARNLTHTLGAWLRTSFIANLVATEQKLFSGFLATVPEAAYVASLRLE 87 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 + + NLV +++ LLG S R L+ +E+ + I+ N Sbjct: 88 PLGVHGALLIDLNLVSPIVDLLLGGSGRAGEV---RDLTEIEEAILFSVSEMIAREFNVA 144 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 E L++ + E + + + + V IP +L Sbjct: 145 WQA-SGIHFATEKREREGQLQRLMGYV--EKTLCMTYEVVMPEARGNLVFCIPAVSLSSI 201 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 +S +++ +S + + Q ++ + + +++ +++GQV+ Sbjct: 202 LRKMISQRDRPRRRSSESRLRVEDRIVQSRFSVALQFPQMRLGAHEIMEMQVGQVVRLPL 261 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRI 300 T A L + R G++ ++ Sbjct: 262 PRNTMAELRVGAVTAFRAHPVRAGEHRAAQV 292 >gi|319898628|ref|YP_004158721.1| flagellar motor switch protein FliM [Bartonella clarridgeiae 73] gi|319402592|emb|CBI76137.1| Flagellar motor switch protein FliM [Bartonella clarridgeiae 73] Length = 322 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 91/291 (31%), Gaps = 7/291 (2%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 +L + G + L L S + K I Sbjct: 21 DVLTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLGNYTSLKFTTDVQSLDTLKADQIT 80 Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + + + W + L+ + E GAS + R S E Sbjct: 81 QAIGTEALLIYFNSDCWGDDVIFVLDATLIELVTEVFFGASEPIVTNRNGRPFSPTE--- 137 Query: 135 AKRTIAQISAVLNQCISTTQESS--PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ +L I L + N + + + + + Sbjct: 138 -RKVGETFGKLLAYAIDGVFGVGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGE 196 Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 V + +++P+ + ++ ++ ++ + V I+ I Sbjct: 197 VEAKVNILMPRSCHRPIQEAVTRALRSPAKRTDPLWAKRLKQEVSRSRVRIEAFIQQGSM 256 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 TL ++ LK+GQV+P + L + K +Y C LG++G +++IR+T+ Sbjct: 257 TLNELSILKVGQVLPLPANAEKQIRLRSGNKSLYKCSLGKIGTSFSIRVTN 307 >gi|299822275|ref|ZP_07054161.1| flagellar motor switch protein FliM [Listeria grayi DSM 20601] gi|299815804|gb|EFI83042.1| flagellar motor switch protein FliM [Listeria grayi DSM 20601] Length = 330 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 90/273 (32%), Gaps = 6/273 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENFVF-SQAS 87 + +L + K + +++ L + F S + + + Sbjct: 49 EHLESLKTLSSAFAKKTIEYVSQRIRLPIHTEAMLADQVSFASEYVDTMPNDSYLFCIID 108 Query: 88 L-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L + +I + E L G + + R LS+ E+ K + L Sbjct: 109 LGDPELGQVIVEYDLAFLIYIHECLTGGNAKRK-FSERRLLSSFEELALKSLVDLSCQAL 167 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + + P L SN+ + IN+++ + S+ + +P ++ Sbjct: 168 QESFKSIHPIEPQLVAVET--NPALLRVTSSNDMMALINIDVKSDYWISTIRVGVPFFSV 225 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + + ++S + + ++ +Q+ + ++ K TL ++ L++G + Sbjct: 226 EYIMEKLENVVEYTFDKSRNFDEEVEQEIHQVEKDAIIKVGDIKMTLAELDELEVGDCLL 285 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + +G+ G I+ Sbjct: 286 TETHVNQPLKGYLSNKWKFESYMGKSGTQKAIK 318 >gi|319405393|emb|CBI79012.1| Flagellar motor switch protein FliM [Bartonella sp. AR 15-3] Length = 322 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 92/288 (31%), Gaps = 3/288 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 L + G + L L S + K + I Sbjct: 22 ALTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLGNYTSLKFTTDVQSLDTLKANQITQ 81 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + + + W + LV E GAS + R S VE K+ Sbjct: 82 AIGTEALLIYFNSDHWGDDVIFVLDATLVELATEVFFGASEPMVTNRNGRPFSPVECKVG 141 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 ++ L+ L + N + + + + + V + Sbjct: 142 ATFGKLLAYALDGVFG--IGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGEVET 199 Query: 196 SFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 +++P+ + + ++ ++ + V+I+ I TL Sbjct: 200 RVNILMPRSCHRPIQEAVTRALRTPAKRTDPLWAKRLKQEVSRSRVHIEAFIQQGSMTLN 259 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ TLK+GQ++P L + K +Y C LG++G +++IR+T+ Sbjct: 260 ELSTLKVGQILPLPANAVKKIKLRSGNKSLYKCSLGKIGTSFSIRVTN 307 >gi|32490802|ref|NP_871056.1| hypothetical protein WGLp053 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166008|dbj|BAC24199.1| fliM [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 319 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 7/300 (2%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 N S + + K+I + +++ + ++ K + +DI+ + Sbjct: 17 NFSEISKNIFLNKNKSKECNKSIIEKLNNVNQKFTGYIKKEITNYIKEPIDITSKEIYTQ 76 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K+ I F + + + ++ I + V +L+ G + + + S Sbjct: 77 KYCDFIKDFNTLVSINLIKTNLFKNDLVIILTTEFVSIILDIFFGGTGNSFGRKNLNEFS 136 Query: 129 TVEKKLAKRTIAQISAVLNQCI-STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 EK++ I + + + L + N NE + N Sbjct: 137 ISEKRIIDILNKLIINCYQKSLKDNINSINLELVTSDTCI---QLINFDKNEKIFISKFN 193 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRI 246 +N+ +F +I ++ L + ++ + ++ + + + I + Sbjct: 194 FHYKNLKINFFIIFSTFSVENENLFYEKKLSNNKEKEQNKWKNKLVNEIKSSKLLIQVKF 253 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + D++ L G++IP + +K + ++S G + +Y +R+ + IN Sbjct: 254 ADLSICVSDLINLNKGEIIPIVKTKK--LTAYVDCIPVFSGSYGSLNGHYALRVENIINS 311 >gi|213615589|ref|ZP_03371415.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 190 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 16/163 (9%), Positives = 43/163 (26%), Gaps = 6/163 (3%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + + P P R+ + + + + + + DI+ Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + + + L + S +LV ++NL G ++ Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165 R + E+++ R + + Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184 >gi|332187923|ref|ZP_08389656.1| surface presentation of antigens family protein [Sphingomonas sp. S17] gi|332012084|gb|EGI54156.1| surface presentation of antigens family protein [Sphingomonas sp. S17] Length = 328 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 23/285 (8%), Positives = 70/285 (24%), Gaps = 15/285 (5%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE------NFVFSQAS 87 L + L +F+ + ++ +F+ + + Sbjct: 37 TMQHLSARLARSLRGLFESLLREELRCWAEPLVVQRFADYRAERGDGLSAWLPMTMTSIG 96 Query: 88 LSSW--SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 + + +++L++ G + L S + ++ Sbjct: 97 GPAIQADAKALCVVEGGFMLSLIDLFFGGAGRAPDTLPT-EFSPAVDAMIAHLGDMMATP 155 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204 + Q + + + + + + + ++ P Sbjct: 156 MRQAWESLARIEFHPGAPE--SSPAMLAKMDGEDAMIVTRFGIAGQDRRPTMLDILYPVA 213 Query: 205 TLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 L +K R + + + + +L ++ LK G Sbjct: 214 ALKPHGSALTGKVVDKQAEADPTWRGDLTRAVMTVRFPVRSVLAEPVVSLSRLMELKTGD 273 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 VIP + + G + +G +++T + Sbjct: 274 VIPISFGPEVP--VMVGGDLLGMGTVGTANGRAAVQLTSLARSAE 316 >gi|254973937|ref|ZP_05270409.1| putative flagellar motor switch protein [Clostridium difficile QCD-66c26] gi|255091323|ref|ZP_05320801.1| putative flagellar motor switch protein [Clostridium difficile CIP 107932] gi|255312981|ref|ZP_05354564.1| putative flagellar motor switch protein [Clostridium difficile QCD-76w55] gi|255515740|ref|ZP_05383416.1| putative flagellar motor switch protein [Clostridium difficile QCD-97b34] gi|255648834|ref|ZP_05395736.1| putative flagellar motor switch protein [Clostridium difficile QCD-37x79] gi|260682051|ref|YP_003213336.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260685649|ref|YP_003216782.1| putative flagellar motor switch protein [Clostridium difficile R20291] gi|306518949|ref|ZP_07405296.1| putative flagellar motor switch protein [Clostridium difficile QCD-32g58] gi|260208214|emb|CBA60573.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260211665|emb|CBE01935.1| putative flagellar motor switch protein [Clostridium difficile R20291] Length = 293 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 32/286 (11%), Positives = 86/286 (30%), Gaps = 15/286 (5%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + L + K ++ + + S + + + V Q + Sbjct: 16 SRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMIVDSIDQVNYQTFLDRVTSSCVVVQNA 75 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + NF ++ ++ G + + +R L+ ++KK+ + + ++ Sbjct: 76 MEPVMKNFSFRIDRSVADMWIDITSGGTGVI--KDNDRELTELDKKVLLHLMDDLVRNMH 133 Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204 + Q + L V +++ + S L P Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNEYIGSVSLCFPYN 186 Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 L N + SE+ + +++ I ++D++ L++ Sbjct: 187 GLEALLESISVIEFFDNDVGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 G VI + + + Y+ G + ++I D + + Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292 >gi|91792691|ref|YP_562342.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] gi|91714693|gb|ABE54619.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] Length = 181 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 3/159 (1%) Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + E V + ++ ++ F + +P + Sbjct: 4 KPDGSIYVEFDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIR 63 Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + Q+ ++ + + V D I + TL+DV+ L+ G +IP Sbjct: 64 ELLDAGVQSDKQDTDMRWSQALRDEIMDVQVGFDANIVEHELTLRDVMGLRAGDIIPIEL 123 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ Y C++G+ + ++I+++I + Sbjct: 124 P--EHIMMRIEDLPTYRCKMGKSRDHLALKISEKIARPE 160 >gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016] gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 396 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 41/376 (10%), Positives = 106/376 (28%), Gaps = 68/376 (18%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G +NTSP + + + + +G + ++ V+I Sbjct: 19 LNGGQEDENTSPSEAAIESE--DGSELSDVEKDLLGEIGNISMGSASTALSTIINQQVNI 76 Query: 61 SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + F+ + + + ++G + Sbjct: 77 TTPVVTLTTLRKLKDEFEIPNVALEVKYTAGIIGENLLVMKVTDAYVIANLMMGGEGKIE 136 Query: 120 PQLY--NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 ++ ++ + + I + + SP + + +D + Sbjct: 137 GEVKELGEIETSAVSEAMNQMIGSAATSMATMFMREINISPPVSNIWDDATEPLSQEISE 196 Query: 178 NEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISL---------------------- 214 +E + ++ ++ I V S+ + + P T K I + Sbjct: 197 DETIIKVSFSLKIGELVDSNIMQLFPVNTAKKIIAIMMGKEEEEKEEEKVEDSKPAAPVK 256 Query: 215 ---------SSQNKSENQSEDLIDPFARKTY----------------------------- 236 S Q ++E S P Sbjct: 257 TENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNIDL 316 Query: 237 --QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + K ++KD++ L G ++ + + NGK++ E+ + + Sbjct: 317 ILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVIDE 376 Query: 295 NYTIRITDRINFDQKS 310 N+ +RI I+ + + Sbjct: 377 NFGVRIKSIISSEDRI 392 >gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555] gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555] Length = 392 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 41/376 (10%), Positives = 106/376 (28%), Gaps = 68/376 (18%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G +NTSP + + + + +G + ++ V+I Sbjct: 15 LNGGQEDENTSPSEAAIESE--DGSELSDVEKDLLGEIGNISMGSASTALSTIINQQVNI 72 Query: 61 SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + F+ + + + ++G + Sbjct: 73 TTPVVTLTTLRKLKDEFEIPNVALEVKYTAGIIGENLLVMKVTDAYVIANLMMGGEGKIE 132 Query: 120 PQLY--NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 ++ ++ + + I + + SP + + +D + Sbjct: 133 GEVKELGEIETSAVSEAMNQMIGSAATSMATMFMREINISPPVSNIWDDATEPLSQEISE 192 Query: 178 NEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISL---------------------- 214 +E + ++ ++ I V S+ + + P T K I + Sbjct: 193 DETIIKVSFSLKIGELVDSNIMQLFPVNTAKKIIAIMMGKEEEEKEEEKVEDSKPAAPVK 252 Query: 215 ---------SSQNKSENQSEDLIDPFARKTY----------------------------- 236 S Q ++E S P Sbjct: 253 TENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNIDL 312 Query: 237 --QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + K ++KD++ L G ++ + + NGK++ E+ + + Sbjct: 313 ILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVIDE 372 Query: 295 NYTIRITDRINFDQKS 310 N+ +RI I+ + + Sbjct: 373 NFGVRIKSIISSEDRI 388 >gi|126697842|ref|YP_001086739.1| putative flagellar motor switch protein [Clostridium difficile 630] gi|115249279|emb|CAJ67092.1| Flagellar motor switch protein FliM [Clostridium difficile] Length = 293 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 32/286 (11%), Positives = 86/286 (30%), Gaps = 15/286 (5%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + L + K ++ + + S + + + V Q + Sbjct: 16 SRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMVVDSIDQVNYQTFLDRVTSSCVVVQNA 75 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + NF ++ ++ G + + +R L+ ++KK+ + + ++ Sbjct: 76 MEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKVLLHLMDDLVRNMH 133 Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204 + Q + L V +++ + S L P Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNECIGSVSLCFPYN 186 Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 L N + SE+ + +++ I ++D++ L++ Sbjct: 187 GLEALLESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 G VI + + + Y+ G + ++I D + + Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292 >gi|255099440|ref|ZP_05328417.1| putative flagellar motor switch protein [Clostridium difficile QCD-63q42] Length = 293 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 32/286 (11%), Positives = 86/286 (30%), Gaps = 15/286 (5%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + L + K ++ + + S + + + V Q + Sbjct: 16 SRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMVVDSIDQVNYQTFLDRVTSSCVVVQNA 75 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + NF ++ ++ G + + +R L+ ++KK+ + + ++ Sbjct: 76 MEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKVLLHLMDDLVRNMH 133 Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204 + Q + L V +++ + S L P Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNEYIGSVSLCFPYN 186 Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 L N + SE+ + +++ I ++D++ L++ Sbjct: 187 GLEALLESISVIEFFDNDIGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 G VI + + + Y+ G + ++I D + + Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292 >gi|255305298|ref|ZP_05349470.1| putative flagellar motor switch protein [Clostridium difficile ATCC 43255] Length = 293 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 32/286 (11%), Positives = 87/286 (30%), Gaps = 15/286 (5%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + L + K ++ + ++ S + + + V Q + Sbjct: 16 SRENLTCLNFLLAEFCKKYKNYIIYELKCNSNMVVDSIDQVNYQTFLDRVTSSCVVVQNA 75 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + NF ++ ++ G + + +R L+ ++KK+ + + ++ Sbjct: 76 MEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKVLLHLMDDLVRNMH 133 Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204 + Q + L V +++ + S L P Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNECIGSVSLCFPYN 186 Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 L N + SE+ + +++ I ++D++ L++ Sbjct: 187 GLEALLESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 G VI + + + Y+ G + ++I D + + Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292 >gi|103488406|ref|YP_617967.1| surface presentation of antigens (SPOA) protein [Sphingopyxis alaskensis RB2256] gi|98978483|gb|ABF54634.1| surface presentation of antigens (SPOA) protein [Sphingopyxis alaskensis RB2256] Length = 312 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 30/273 (10%), Positives = 75/273 (27%), Gaps = 9/273 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 S+ + + L + + V + + + F+ + +F + Sbjct: 40 PALESVANQFARSLRDLVRALGAPGVQVERSGAEQLSFAEWSGA-AAPAIFWRYHAPPLK 98 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 I + L++ L++ G + + L+ E + A R I + Sbjct: 99 GPLLIAAARPLLLQLVDIFYGGRGQLGGERE--ELTDAEDRFAARLGRDIGMQIAAAWRD 156 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI-IPQETLLKT-T 210 P L+ K +++ + + + + P L Sbjct: 157 KLVIEPELD--CVTGDPAKLAAVRADDELFVQRFTLRGAPLDGRTIACAYPVAALRGIAG 214 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 L + + + + + + + +L ++ L++G +IP Sbjct: 215 DELLPDMQGGNGGDPAWTGALDKALRGVRLPVRSVLARPEISLVKLLALEVGDIIPLSMP 274 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 G+ +G N I I Sbjct: 275 RHVPVT--VAGRSFAFGSIGEANGNAAILIDHI 305 >gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D str. 1873] gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D str. 1873] Length = 394 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 43/367 (11%), Positives = 107/367 (29%), Gaps = 64/367 (17%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 +S +N + + + + +G + + V+I+ Sbjct: 29 SDESTEENVKDVENAQES---SEDKITDIEMDLLGEIGNISMGSASTALSTIIGNVVNIT 85 Query: 62 YTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + ++F+ S + + ++G Sbjct: 86 TPQVSSTTLEKLRNTFEVPNIALEVKYTSGIVGGNLLVMKIPDAAVIANLMMGGDGRIEE 145 Query: 121 QLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + L+ +E+ + I + + S SP + + + Sbjct: 146 KS---ELTEIEESAVSEAMNQMIGSAATSMATMFSREVNISPPVYKIWKDTSMPLCETIK 202 Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFA- 232 N+ + ++ +TI + V S+ + I P +T K I + + ++ QS + Sbjct: 203 ENDDIIKVSFKLTIGDLVDSNIMQIFPIKTAKKIVSIMMGQEEKGEAVEQSSNKTQQINK 262 Query: 233 -------------------------------------------------RKTYQLNVNID 243 + + I Sbjct: 263 MQNQETSSNSQVEPKPVETYTKSQPQVNIQKASFAPLQESNINGAPQNIDLILDVPLEIS 322 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + K ++KD++ L G +I + + NGK+I E+ V +N+ +RI + Sbjct: 323 VVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDENFGVRIVNI 382 Query: 304 INFDQKS 310 ++ +++ Sbjct: 383 VSGEERV 389 >gi|114706761|ref|ZP_01439661.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506] gi|114537709|gb|EAU40833.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506] Length = 321 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 42/318 (13%), Positives = 109/318 (34%), Gaps = 14/318 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 T+P + RL + + +++ + L V +++ + G Sbjct: 7 GTAPSD--IGKRLKSASELEPSKLHRLAAIVEETAEELTLALNRLSIDKVAVTFRDFEMG 64 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + I ++ +F+ + + ++ L + GA + + R+L+ Sbjct: 65 QGADGIGDAGDDVLFATLTSKRFGRPAYLAAPETLADVCISAYFGA--KPAERAGKRALT 122 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +++ L K T + E+ F + + L + + ++ + Sbjct: 123 DLDRALVKTTFKTFVETFASAFAPIDEAGLAAGGFVECEELDELLGGPNAGRYVSMTFGL 182 Query: 189 -TIENVA--------SSFVLIIPQETL-LKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 + + S+ L +P L L ++S + E + R + Sbjct: 183 SKAGDRSATAEEEPLSTLTLALPSSYLSLHRRVLSEPLPLPQPSPDETWSEAMVRNFEKS 242 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++++ + K+ L +V ++GQ + L GK I+ ++G +Y Sbjct: 243 GLHLEAVLARKQVPLAEVAHFRVGQTLALDVMVSELITLECEGKPIFKSQVGFSRGSYVA 302 Query: 299 RITDRINFDQKSLKNFLH 316 R + ++ Q+ + L Sbjct: 303 RFEEAVDPTQEFINGILS 320 >gi|91792689|ref|YP_562340.1| flagellar motor switch protein FliM [Shewanella denitrificans OS217] gi|91714691|gb|ABE54617.1| flagellar motor switch protein FliM [Shewanella denitrificans OS217] Length = 190 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 40/143 (27%), Gaps = 6/143 (4%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + L M ++S Q KF Sbjct: 35 YDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQMLKFGE 88 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +H+ + S I LV L++N G ++ R + E+ Sbjct: 89 YVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFTPTER 148 Query: 133 KLAKRTIAQISAVLNQCISTTQE 155 ++ + + I + + + Sbjct: 149 RIVQLLLKIIFEDYKEAWAPVMD 171 >gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] gi|973195|gb|AAB00544.1| FliY [Treponema pallidum] gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 348 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 34/332 (10%), Positives = 96/332 (28%), Gaps = 44/332 (13%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 P A +G G ++ S + V IS + Sbjct: 26 PAAGASFSGG-GLSSAQSELLQSFCQANVGSFCPSLESLTGKTVSISPPRVEISSKEEFS 84 Query: 75 HSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 + V + ++ + + L+ + SHE Q+ + LS V + Sbjct: 85 RVIPDMLVATVIDFEGEFAGDHLFLMAPEFAQKLVNLV---SHEDNDQIDDMGLSVVSET 141 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 + + AQ+S + + + + K R + + + ++ Sbjct: 142 ITQYVSAQLSTL------EARNVQNVSVAPAESVQVPKAMVRFPPQRLCVFTYTVELDGT 195 Query: 194 ASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARK------------------ 234 + + ++ ++ +++ + Q + + Sbjct: 196 SYTLWELVSEQLMVRIIERMGGAMQRPQAQVGNSQMGGVNMQMGIGAASPSVQSVQFHPL 255 Query: 235 --------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 + + + + + +KD++ + G +I + N Sbjct: 256 QNAAGGAEQGNIGLIMDVFMEVTVELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVN 315 Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 K I E+ + +N+ +R+T+ ++ ++ Sbjct: 316 HKLIAKGEVVVIDENFGVRVTEILSPGERIAD 347 >gi|255521671|ref|ZP_05388908.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J1-175] Length = 213 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 74/204 (36%), Gaps = 3/204 (1%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I +I + E L G + + R LS E+ K + + L + Sbjct: 1 MIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEALKDSFKSVHP 59 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 SP + + N+ + +++++ E S+ + +P ++ + + Sbjct: 60 ISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLEN 117 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 118 VVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRDTL 177 Query: 276 ILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 178 KGYVTEKWKFECYMGKSGNQKAVK 201 >gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP] Length = 366 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 47/351 (13%), Positives = 102/351 (29%), Gaps = 56/351 (15%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 LL ++ + +G + + VDIS + + Sbjct: 13 DALLKQVVQDEELSDIEISMVGEVGNIILGAGATALSNILGRKVDISTPEVEVMTLRELR 72 Query: 75 HSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEK 132 V + L L + ++G + +L LS V + Sbjct: 73 KGISGEKVCVTIHFEGEVEGLNALVLEKQLAAELADIMMGGLGKPESDELDEFKLSAVGE 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDF--YDIDYLKKNTNRLSNEFVTTINMNMTI 190 + + + L+ I +P + +D + +K N+ V MTI Sbjct: 133 A-MNQMMGSAATSLSDMIKKPVSITPPTTEILNFDDESVKFPPIGDENDKVAKATFTMTI 191 Query: 191 ENV-ASSFVLIIPQE-------------TLLKTTLISLSSQNKSENQSE----------- 225 E + + F L +P T+ + + + + S+ Sbjct: 192 EGLQPAKFFLAMPISFVKKLYELIFGTPTVEQKQASAPAPGTDQTSASKPTSFVPPTPKR 251 Query: 226 -----------------------DLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTL 259 + + + +N+ + K LK+++ L Sbjct: 252 EEKQAVAARPVQFEDFGRTQQPSEKPQILDERLQLLFDVPLNVTVELGRTKLALKEIMEL 311 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G +I + N K I E+ + +N+ +RIT+ +N ++ Sbjct: 312 GVGSLIELDKLTGEPVDIYVNNKLIARGEVVVIDENFGVRITEIVNPKERL 362 >gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319] gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319] Length = 385 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 33/333 (9%), Positives = 94/333 (28%), Gaps = 52/333 (15%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ VDI+ + + F Sbjct: 51 KDALGEIGNISFGSSATALSALLNQKVDITTPFVSLVYKEELTNEFPNPHVAVQVQYTEG 110 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 +S + + + + +LG + E ++ + + ++ + + + ++ Sbjct: 111 FSGTNLLVIKHEDAAVISDLMLGGTGENPTEIMDEIKLSAVQEAMNQMMGSAATSMSTVF 170 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D +I + ++ ++ N+ + + S+ + ++ Sbjct: 171 QKKIDISPPSLDILNIQKGEGTELIPQDDVFVKVSFNLKVGTLIDSNIMQLLSISFAKSL 230 Query: 210 TLISLSSQNKSENQSEDLIDPFARK----------------------------------- 234 L + S + K Sbjct: 231 VEELLVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPVHVPVDVQPASFSEF 290 Query: 235 ---------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + K T+++++ L G +I + Sbjct: 291 EHMSSPQGNSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILI 350 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 N K I E+ + +N+ +R+TD I+ + K Sbjct: 351 NSKLIAKGEVVVIDENFGVRVTDIISQKDRINK 383 >gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex degensii KC4] gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex degensii KC4] Length = 360 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 34/315 (10%), Positives = 90/315 (28%), Gaps = 36/315 (11%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SL 88 + +G + E + V I+ Q ++ SF ++ Sbjct: 39 EEKDALGEIGNIAMGAAATALSEILGRRVTITSPHVQVTTKEELLKSFTVPYLIVSVPYT 98 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + ++G + P L +S V + + + + L Sbjct: 99 EGLEGLSLLVVKVEDASVIADLMMGGEGKRSPTLGEIEISAVAEA-MNQMMGAAATSLAD 157 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLL 207 T +P + + + + + I+ MTIE++ + + ++ T Sbjct: 158 IYHRTVGIAPPQVRIFSKEGEAATNDLGVEDPIAVISFRMTIEDLLDTEIMRVLSVSTAK 217 Query: 208 KTTLISLSSQNKSENQSED--------------------------------LIDPFARKT 235 + + E + E Sbjct: 218 EEASLLWQGVYGEEEKREKPYSEKPSPAEEAAATAAPAVTPSSPAPPPLDVDRSRL-ELI 276 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + + + + +K+++ L G ++ + NG + E+ V +N Sbjct: 277 LDIPLKVSVVLGRTRRPIKEILGLGPGSILELDALADEPVEILVNGVLVARGEVVVVEEN 336 Query: 296 YTIRITDRINFDQKS 310 + +RIT + ++ Sbjct: 337 FGVRITSIVTPQERL 351 >gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM 8271] gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM 8271] Length = 373 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 47/355 (13%), Positives = 115/355 (32%), Gaps = 55/355 (15%) Query: 10 TSPLHPILLARLT--GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + P + +T + + + + V+I+ Sbjct: 16 SGPADDMEQEEITQKFLEEISSLERDALGEIANISMGTAATTLSQLVGRKVEITTPKVDI 75 Query: 68 GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNR 125 ++ + + + + + + + S + +++ ++G S ++ +L + Sbjct: 76 TTPREVLDEYPVPYVLIAVSYKKGITGSNMLILSRSDGSIIVDLMMGGSGQSPYEELTDL 135 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTT 183 +S + + + + + ++ S+T + +P + + T+ NE V Sbjct: 136 QVSGISEA-MNQMMGSAATSMSTMFSSTVDITPPNVIITKEGEEDAFLQTDIDPNEPVVK 194 Query: 184 INMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA---------- 232 I+ M IE V S+ + +IP T L++Q + ++ E + Sbjct: 195 ISFKMNIEGVLDSTLLQVIPLSVAKNMTERLLNNQPEPQSGPEARQEREYHSEPPLSPPP 254 Query: 233 -------------------------------------RKTYQLNVNIDTRINLKKTTLKD 255 + + + + + T+KD Sbjct: 255 DIFWQQQSSMSSQSTPVQPAQFSQLVTGNHPAIPNNLDLIFDVPLQVSVELGKANKTIKD 314 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 ++ L G V+ + NGK I CE+ + + + IRIT+ IN Q+ Sbjct: 315 ILELGPGSVVELDRIAGEPVDMIVNGKLIAKCEVVVINETFGIRITEIINQAQRM 369 >gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551] gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551] Length = 385 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 33/333 (9%), Positives = 93/333 (27%), Gaps = 52/333 (15%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ VDI+ + F Sbjct: 51 KDALGEIGNISFGSSATALSALLNQKVDITTPFVSLVYKEELTDEFPNPHVAVQVQYTEG 110 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 +S + + + + +LG + E ++ + + ++ + + + ++ Sbjct: 111 FSGTNLLVIKHEDAAVISDLMLGGTGENPTEIMDEIKLSAVQEAMNQMMGSAATSMSTVF 170 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D +I + ++ ++ N+ + + S+ + ++ Sbjct: 171 QKKIDISPPSLDILNIQKGEGTELIPQDDVFVKVSFNLKVGTLIDSNIMQLLSISFAKSL 230 Query: 210 TLISLSSQNKSENQSEDLIDPFARK----------------------------------- 234 L + S + K Sbjct: 231 VEELLVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPGHVSVDVQSASFAEF 290 Query: 235 ---------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + K T+++++ L G +I + Sbjct: 291 EHVSSPQGDSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILI 350 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 N K I E+ + +N+ +R+TD I+ + K Sbjct: 351 NSKLIAKGEVVVIDENFGVRVTDIISQRDRINK 383 >gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7] gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7] Length = 360 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 39/334 (11%), Positives = 100/334 (29%), Gaps = 52/334 (15%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T I +G + + ++ V I+ + KF II + V + Sbjct: 31 DQTQVDIIGEIGNISMSQAATTLSDILNHRVTITTPVVSTLKFQEIIDASVTPKVVTTIE 90 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQI 142 + + + I + + ++ N+ + +E + + Sbjct: 91 FKKGLEGSNLLMMNERDAIIIADLMMDGDG----NPENKEFTELELSAVGEAMNQMMGSA 146 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201 + + + + P + + + V I MT+ + + S + + Sbjct: 147 ATAMATMLERIVDILPPDVEVWKDQNNVTYDRISGDTMVCKIAFQMTVGDFIESEIMQVF 206 Query: 202 PQETLL---------------------------KTTLISLSSQNKSENQSEDLIDPFARK 234 +T+ + ++ + F Sbjct: 207 TLDTVRNISKIVLADEGEVIQDRQLPQAEEMTAPIAPAANQPTQETAGKIGIQKPEFQEL 266 Query: 235 --------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 + + + K T+KD+++L G V+ + N Sbjct: 267 THAGSLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVN 326 Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 GK I E+ + +++ IRIT+ ++ +Q+ +K+ Sbjct: 327 GKLIAEGEVVVINESFGIRITNILSKEQR-IKHL 359 >gi|213612309|ref|ZP_03370135.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 147 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 3/144 (2%) Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SEN 222 ++ N N+ V ++ I N+ F + +P + + ++ + S + Sbjct: 2 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRH 61 Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 + ++ D R+ + + L ++ LK G V+P I +G Sbjct: 62 EDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGV 119 Query: 283 EIYSCELGRVGKNYTIRITDRINF 306 + + + G V Y +R+ IN Sbjct: 120 PVLTSQYGTVNGQYALRVEHLINP 143 >gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum Rt17-B1] gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum Rt17-B1] Length = 357 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 45/342 (13%), Positives = 104/342 (30%), Gaps = 47/342 (13%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 LL +LT + + + +G + + VDIS + + Sbjct: 13 DALLGQLTSEESLTDIEKDMIGEVGNIILGSGATALSSILGRKVDISTPEVEVKTLKDLR 72 Query: 75 HSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEK 132 V + + + ++G + +L LS V + Sbjct: 73 SEVSGEKVTVIIHFEGAVEGLNALVLEKKTAAEIADIMMGGLGKVESDELDEMKLSAVGE 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK--KNTNRLSNEFVTTINMNMTI 190 + + + L+ I + +P + + D + + V +N M+I Sbjct: 133 A-MNQMMGSAATSLSDMIKKSVNITPPTIEILNFDNAETKFPPIGEDADKVAKVNFTMSI 191 Query: 191 ENVA-SSFVLIIPQETLLKTTLISLSSQNKSENQSE------------------------ 225 E++ + F L +P + K + K S+ Sbjct: 192 EDLEPAKFFLAMPIPFVKKMYEMIFGKTEKQTATSQTQKTPTQSVPSPSIPKEKTAVAAK 251 Query: 226 --------------DLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + + + +N+ + K +LK+++ L +G +I Sbjct: 252 PVQFEDFGKVPSAQEQTQVIDERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIELD 311 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K I E+ + +N+ +RIT+ ++ ++ Sbjct: 312 KLTGEPVDIYVNNKLIARGEVVVIDENFGVRITEIVSPKERL 353 >gi|221639608|ref|YP_002525870.1| Surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides KD131] gi|221160389|gb|ACM01369.1| Surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides KD131] Length = 331 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 11/290 (3%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +L R + + G L + ++ L +D+ C + ++ Sbjct: 17 SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 74 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ ++ I + L+ L+E P R S + + Sbjct: 75 MPEDLSFYAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 132 Query: 136 KRTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191 + I + A L+ + + + +D + L + V +++ + Sbjct: 133 QDFIDRALAELDLLLIEDEDRVWAGGFRYASFLDDPRPLGLLLEDCPYRVLVAEVDLALG 192 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 +L +P + + L Q+++ D A + ++ ++ + Sbjct: 193 AKTGQLLLAVPADG--RGELPHHGGQDEAPPPLSDFGAAMAEQVMAVDCRLEAVLGRITL 250 Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300 L V+ + G +P + +G + LG+ +R+ Sbjct: 251 PLAHVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 300 >gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT] gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain [Clostridium novyi NT] Length = 396 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 41/370 (11%), Positives = 106/370 (28%), Gaps = 64/370 (17%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + +N S + + T + +G + + V+I+ Sbjct: 25 TQEQSQENVSNVSDETKVDEKKESPITDTERDLLGEIGNISMGSASTALSTIIASAVNIT 84 Query: 62 YTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + +F+ S + + ++G + Sbjct: 85 TPQVRVTTLKELRDTFEVPNIALEVKYTSGIIGGNLLVMKIPDAAVIANLMMGGDGKIEE 144 Query: 121 QLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + L+ +E+ + I + + SP + + L + + Sbjct: 145 KS---ELTEIEESAVSEAMNQMIGSAATSMATMFGREVNISPPISKIWKDAALPLSESIS 201 Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP---FA 232 E + ++ +TI + V S+ + I+P +T K I + + + + + + Sbjct: 202 EEEDIIEVSFKLTIGDLVDSNIMQILPIKTAKKIVSIMMGEEEEDMQLNPKVEERPVNIK 261 Query: 233 RKTYQLN----------------------------------------------------V 240 + + Sbjct: 262 SDLNKAPQQIDPKPAETYTQPQNSVPQSQVSVQRANFAPLDQNPISGVPQNIDLILDVPL 321 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I + K ++K+V+ L G +I + + NGK+I E+ V +N+ +RI Sbjct: 322 EISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDENFGVRI 381 Query: 301 TDRINFDQKS 310 ++ +++ Sbjct: 382 VSIVSGEERV 391 >gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str. Langeland] gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str. Langeland] gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str. 230613] Length = 386 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + ++ V+I+ + +SF+ S Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146 + + + ++G + ++ + LS +E + I + + Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + SP L + +E V ++ ++ I V SS + ++P +T Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222 Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234 K I + ++ ++ Q P R+ Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMIYEKPIEREAPKVEV 282 Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + I + K +KD++ L G +I Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf] gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657] gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf] gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str. 657] Length = 386 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + ++ V+I+ + +SF+ S Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146 + + + ++G + ++ + LS +E + I + + Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + SP L + +E V ++ ++ I V SS + ++P +T Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222 Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234 K I + ++ ++ Q P R+ Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSTQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEV 282 Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + I + K +KD++ L G +I Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch Maree] gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str. Loch Maree] Length = 386 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + ++ V+I+ + +SF+ S Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146 + + + ++G + ++ + LS +E + I + + Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + SP L + +E V ++ ++ I V SS + ++P +T Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222 Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234 K I + ++ ++ Q P R+ Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEV 282 Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + I + K +KD++ L G +I Sbjct: 283 KQASFEPLSIRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC 2916] gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC 2916] Length = 386 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + ++ V+I+ + +SF+ S Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146 + + + ++G + ++ + LS +E + I + + Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + SP L + +E V ++ ++ I V SS + ++P +T Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222 Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234 K I + ++ ++ Q P R+ Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEV 282 Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + I + K +KD++ L G +I Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC 15579] gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC 15579] Length = 390 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 46/368 (12%), Positives = 108/368 (29%), Gaps = 65/368 (17%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 G + L L +K + +G + ++ V+I+ Sbjct: 23 GSQEEEEKKEATDTELPELPDLTDLEK---DLLGEVGNISMGSASTALSTIINQQVNITT 79 Query: 63 TSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + SF+ S + + + ++G + + Sbjct: 80 PVVSVTTLERLKDSFEIPNIALEVKYTSGIVGENLLVMKIDDAAVISNLMMGGNGIVEGE 139 Query: 122 LYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 + + LS +E + I + + + SP L + Sbjct: 140 I--KELSEIEISAVSEAMNQMIGSAATSMATMFAREVNISPPLSKIWSDLTAPLAEGISD 197 Query: 178 NEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQN------------------ 218 +E V ++ ++ I V S+ + ++P +T K I + ++ Sbjct: 198 DEPVVLVSFSLNIGELVDSNIMQLLPMKTAKKIVAIMMGEESMDEPSVENNSTPAPIVEE 257 Query: 219 -------KSENQSEDLIDPFARK-----------------------------TYQLNVNI 242 ++ Q P R+ + + I Sbjct: 258 KKSAKAVEAPKQEIVYEKPIEREAPKVEVKQASFEPLSVRESATTMPNNIDLILDVPLQI 317 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + K +KD++ L G +I + + NGK++ E+ V +N+ +RIT+ Sbjct: 318 SVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDENFGVRITN 377 Query: 303 RINFDQKS 310 ++ ++ Sbjct: 378 IVSSQERI 385 >gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str. ATCC 3502] gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC 19397] gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall] gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str. Kyoto] gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str. ATCC 3502] gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str. ATCC 19397] gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str. Hall] gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str. Kyoto] Length = 386 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 41/339 (12%), Positives = 100/339 (29%), Gaps = 62/339 (18%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + ++ V+I+ + +SF+ S Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146 + + + ++G + ++ + LS +E + I + + Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP--- 202 + SP L + +E V ++ ++ I V SS + ++P Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222 Query: 203 -----------QETLLKTTLISLSSQNKSENQSED-----------LIDPFARK------ 234 + + + S + E + P R+ Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPTKAVEAPKQEIVYEKPIEREAPKVEI 282 Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + I + K +KD++ L G +I Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402 065] Length = 386 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + ++ V+I+ + +SF+ S Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146 + + + ++G + ++ + LS +E + I + + Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEV--KELSEIEISAVSEAMNQMIGSAATSM 162 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + SP L + +E V ++ ++ I V SS + ++P +T Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222 Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234 K I + ++ ++ Q P R+ Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSTQASTVEEKKPAKVVEAPKQEMVYEKPIEREAPKVEV 282 Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + I + K +KD++ L G +I Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra] gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str. Okra] Length = 386 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + ++ V+I+ + +SF+ S Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146 + + + ++G + ++ + LS +E + I + + Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + SP L + +E V ++ ++ I V SS + ++P +T Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222 Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234 K I + ++ ++ Q P R+ Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSTQASTVEEKKPAKAVEAPKQEIVYEKPIEREAPKVEV 282 Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + I + K +KD++ L G +I Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|229544405|ref|ZP_04433463.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus coagulans 36D1] gi|229324890|gb|EEN90567.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus coagulans 36D1] Length = 368 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 28/361 (7%), Positives = 101/361 (27%), Gaps = 54/361 (14%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + ++ S + + + +G + + V+I Sbjct: 11 LNGTANLEDASAKDSLRVEDYLDSMERDA-----LGEIGNISFGSSATALSTLLSQKVEI 65 Query: 61 SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + F +S + + + + +LG + E Sbjct: 66 TTPEVSIVRHDKLADEFPHPYVAIQVKYTEGFSGVNVLVIKQSDAAIIADLMLGGTGENP 125 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 + + ++ + + + ++ + + SP +I + + Sbjct: 126 SSELDEIHLSAVQEAMNQMMGSAATSMSTVFNKRIDISPPAVSLLNILEGEGTDKLPDQD 185 Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLL--------KTTLISLSSQNKSENQSEDLIDP 230 + ++ + I + + S + ++P + + + +++ Sbjct: 186 LLVKVSFRIMIGSLIDSQIMQLLPLSFAKKLARDLIHPEQPAEAEKKAEEKQPDQNMRGH 245 Query: 231 FARK---------------------------------------TYQLNVNIDTRINLKKT 251 A K + + + + Sbjct: 246 AAEKPAEPAQNAAKQEMYQNVQPAVFTSFEETAPRVETKNLDMLLDIPLEVTVELGRTSK 305 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 T+++++ + G ++ + N + I E+ + +N+ +R+TD ++ + Sbjct: 306 TVREILEMGAGSIVELDKLAGEPVDILINHQLIAIGEVVVIDENFGVRVTDIVSQKDRLK 365 Query: 312 K 312 K Sbjct: 366 K 366 >gi|207109404|ref|ZP_03243566.1| flagellar motor switch protein FliM [Helicobacter pylori HPKX_438_CA4C1] Length = 193 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 2/162 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ P + L K + S+ + L M V+I S Sbjct: 28 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 87 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG Q NR Sbjct: 88 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 145 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169 S +E L + Q+ +L + S E P ++ + Sbjct: 146 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV 187 >gi|332558593|ref|ZP_08412915.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides WS8N] gi|332276305|gb|EGJ21620.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides WS8N] Length = 323 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 11/290 (3%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +L R + + G L + ++ L +D+ C + ++ Sbjct: 9 SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 66 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ + I + L+ L+E P R S + + Sbjct: 67 MPEDLSFHAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 124 Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191 + I + A L+ + ++ + +D + L + V + + + Sbjct: 125 QDFIDRALAELDLLLLEDEDRVWASGFRYASFLDDPRPLGLLLEDCSYRVLVAEVELALG 184 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + +L +P + + SQ+++ D A + ++ ++ + Sbjct: 185 AKSGQLLLAVPADG--RGERPHDGSQDEAPPPLTDFGAALAEQVMAVDCRLEAVLGRITL 242 Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300 L V+ + G +P + +G + LG+ +R+ Sbjct: 243 PLAQVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 292 >gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2] gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2] Length = 352 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 45/323 (13%), Positives = 105/323 (32%), Gaps = 39/323 (12%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 +++ I +G + +DL V I+ KF I++ V + Sbjct: 26 EEQVKVDIIGEVGNISMSQAATTLSSILDLRVSITTPRVSKIKFGEILNDLVAPKVATTV 85 Query: 87 SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 + + I + + ++G + E + + + + I S Sbjct: 86 EFKEGLLGSNLMLLEVKDAIVIADLMMGGTGEPTNTQFTELELSAVAEAMNQMIGTASTS 145 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQE 204 + IS + P + ++ + + + E + I+ ++ +E + S + I Sbjct: 146 MATMISRKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIESKIMQIFTDP 205 Query: 205 TLLKTTLISLS---------------------------SQNKSENQSEDLIDPFA----- 232 + LS + +K S+ A Sbjct: 206 VVNDIASAMLSDEATVVTRETPTPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVN 265 Query: 233 -----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + +++ + K T+KD+++ G VI + NGK I + Sbjct: 266 DGDNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATG 325 Query: 288 ELGRVGKNYTIRITDRINFDQKS 310 E+ + +N+ +RIT+ ++ Q+ Sbjct: 326 EVVVINENFGVRITNILSQKQRI 348 >gi|77463738|ref|YP_353242.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1] gi|77388156|gb|ABA79341.1| possible flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1] Length = 323 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 11/290 (3%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +L R + + G L + ++ L +D+ C + ++ Sbjct: 9 SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 66 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ + I + L+ L+E P R S + + Sbjct: 67 MPEDLSFHAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 124 Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191 + I + A L+ + ++ + +D + L + V + + + Sbjct: 125 QDFIDRALAELDLLLLEDEDRVWASGFRYASFLDDPRPLGLLLEDCSYRVLVAEVELALG 184 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + +L +P + + SQ+++ D A + ++ ++ + Sbjct: 185 AKSGQLLLAVPADG--RGERPHDGSQDEAPPPLTDFGAALAEQVMAVDCRLEAVLGRITL 242 Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300 L V+ + G +P + +G + LG+ +R+ Sbjct: 243 PLAQVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 292 >gi|146277515|ref|YP_001167674.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] gi|145555756|gb|ABP70369.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] Length = 311 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 97/294 (32%), Gaps = 12/294 (4%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + +L R + + L + ++ L +D++ + + Sbjct: 1 MTDGVLRRKIEAKARPVVAQAAGAERALRLS--LARAARDAFALALDVAGLASARRSLAE 58 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ +E +++ + S ++ L+E P +R + + Sbjct: 59 LLEMPEERSLYAIVE-GPGEGLGLVALSPPVLSALIEVQTIGRVSAQP-PASRKPTRTDA 116 Query: 133 KLAKRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNM 188 + I Q A L ++ ++ + +D + L + V T+N+++ Sbjct: 117 AMVSGFIDQTLAELEVLLAEDEDRIWAGGFRYASFLDDPRPLGLLLEDCAYRVLTVNVDL 176 Query: 189 TIENVASSFVLIIPQET-LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + + S +L +P E + + ++ D A + +D + Sbjct: 177 ALGAKSGSLLLALPAEGRGEP--PLRPEAPEETGTPGSDFGLALAEQVMGAECLLDAVLA 234 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRI 300 L V+ ++G V+ ++ +G+++ LG+ IR+ Sbjct: 235 RVTLPLGTVMGWQVGDVVDLSKATLEDVAFVALDGRQVAEGRLGQHRGMRAIRL 288 >gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942] gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942] Length = 379 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 32/336 (9%), Positives = 99/336 (29%), Gaps = 58/336 (17%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91 +G + ++ VDI+ S S I F + Sbjct: 40 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGF 99 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 S + + + + + ++G + + ++ + + + ++ S Sbjct: 100 SGSNLLVVEQSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 159 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210 + SP + D++ K ++E + ++ + + + S+ + + P Sbjct: 160 KKIDISPPRVELLDVNEEKGTDRIPADEMLVKVSFRLKVGELIDSNIMQLYPITFAKDLI 219 Query: 211 LISLSSQNKSENQSEDLID--------------PFARK----------------TYQLNV 240 +++ + +E+ ++ + + V Sbjct: 220 SDLMNTGSSNEDIQQEEPEETYEAPEEAVMPEPRLESQPQPTPKRQGKPKKAAPVQVAPV 279 Query: 241 N--------------------------IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 I + K ++K+++ L G +I Sbjct: 280 EFSAFDPNEAPQAHLNNLDMLMDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEP 339 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + + E+ + +N+ +R+TD ++ ++ Sbjct: 340 VDILVNQRIVAKGEVVVIEENFGVRVTDILSQAERI 375 >gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus ATCC 12755] gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus ATCC 12755] Length = 352 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 45/325 (13%), Positives = 106/325 (32%), Gaps = 43/325 (13%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 +++ I +G + +D V I+ KF I++ V + Sbjct: 26 EEQVKVDIIGEVGNISMSQAATTLSSILDRRVSITTPRVSKIKFGEILNDLVAPKVATTV 85 Query: 87 SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 + + I + + ++G + ET + + + + I S Sbjct: 86 EFKEGLLGSNLMLLEVKDAIVIADLMMGGTGETSNTQFTELELSAVAEAMNQMIGTASTS 145 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII---- 201 + IS + P + ++ + + + E + I+ ++ +E + S ++ I Sbjct: 146 MATMISRKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIKSKIMQIFTDP 205 Query: 202 ------------------------------------PQETLLKTTLISLSSQNKSENQSE 225 P T + + Q + + Sbjct: 206 VVNDIASAMLSDEATVVTRETPTPQPTAPVAAPTPEPAATSKPVEVSKPAFQTLASSGVS 265 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 D D + +++ + K T+KD+++ G VI + NGK I Sbjct: 266 D-GDNL-DLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIA 323 Query: 286 SCELGRVGKNYTIRITDRINFDQKS 310 + E+ + +N+ +RIT+ ++ Q+ Sbjct: 324 TGEVVVINENFGVRITNILSQKQRI 348 >gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens DSM 7] gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens DSM 7] gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208] gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens LL3] Length = 377 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 30/336 (8%), Positives = 92/336 (27%), Gaps = 58/336 (17%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91 +G + ++ VDI+ S S I F + Sbjct: 38 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGF 97 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + + + + ++G + + ++ + + + ++ S Sbjct: 98 DGSNLLVVEQSDAAIIADLMIGGDGQGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 157 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT- 209 + SP + D+ K ++ + ++ + + + SS + + P Sbjct: 158 KKIDISPPRVELLDVTEEKGTDRIPEDDLLVKVSFRLKVGELIDSSIMQLYPITFAKDLI 217 Query: 210 -------------------------------------TLISLSSQNKSENQSEDLIDPFA 232 Q ++ + + P Sbjct: 218 AELMDTDQPEADETVSEPRETYETPQPEPAIQQEPQAKPELPKRQGTAKKAAPVQVAPVE 277 Query: 233 ------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + +++ + K ++K+++ L G +I Sbjct: 278 FQAFDQNAADGHGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEP 337 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + + E+ + +N+ +R+TD ++ + Sbjct: 338 VDILVNQRIVAKGEVVVIEENFGVRVTDILSQADRL 373 >gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42] gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42] Length = 378 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 30/337 (8%), Positives = 91/337 (27%), Gaps = 59/337 (17%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91 +G + ++ VDI+ S S I F + Sbjct: 38 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGF 97 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + + + + ++G + ++ + + + ++ S Sbjct: 98 DGSNLLVVEQSDAAIIADLMIGGDGRGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 157 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT- 209 + SP + D+ K ++ + ++ + + + SS + + P Sbjct: 158 KKIDISPPRVELLDVMEEKGTDRIPEDDLLVKVSFRLKVGELIDSSIMQLYPITFAKDLI 217 Query: 210 ---------------------------------------TLISLSSQNKSENQSEDLIDP 230 Q ++ + + P Sbjct: 218 ADLMTADQHESEAAETVSEPQETYETPQPEPAMQPEPQAKPELPKRQGTAKKAAPVQVAP 277 Query: 231 FA-----------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + +++ + K ++K+++ L G +I Sbjct: 278 VEFQAFDHNEAAQGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGE 337 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + + E+ + +N+ +R+TD ++ + Sbjct: 338 PVDILVNQRIVAKGEVVVIEENFGVRVTDILSQADRL 374 >gi|126462567|ref|YP_001043681.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] gi|126104231|gb|ABN76909.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] Length = 323 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 90/290 (31%), Gaps = 11/290 (3%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +L R + + G L + ++ L +D+ C + ++ Sbjct: 9 SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 66 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 ++ + I + L+ L+E P R S + + Sbjct: 67 MPEDLSFHAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 124 Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191 + I + A L+ + ++ + +D + L + V + + + Sbjct: 125 QDFIDRALAELDLLLLEDEDRVWASGFRYASFLDDPRPLGLLLEDCSYRVLVAEVELALG 184 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + +L +P + + SQ++++ D A + ++ ++ + Sbjct: 185 AKSGQLLLAVPADG--RGERPHDGSQDEAQPPLTDFAAALAEQVMAVDCRLEAVLGRITL 242 Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300 L V+ + G +P + +G + LG+ +R+ Sbjct: 243 PLAHVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 292 >gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1] gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1] Length = 346 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 39/314 (12%), Positives = 103/314 (32%), Gaps = 33/314 (10%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88 + + +G + + D+ I+ + + K ++ F V + Sbjct: 28 EEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYI 87 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + LV + + ++G S E + + + + + + + L++ Sbjct: 88 EGLEGLNVLVLNKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQMMGSAATSLSE 147 Query: 149 CISTTQESSPNLEDFYDIDYLK-KNTNRL--SNEFVTTINMNMTIENVA-SSFVLIIPQE 204 + T SP + + D + + V + + IE + S F +I + Sbjct: 148 LLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEIEIEGLPKSKFYQVISAD 207 Query: 205 TLLKTTLISLSSQNKSEN----------------------------QSEDLIDPFARKTY 236 + K Q++++ + ++ Sbjct: 208 LVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLL 267 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + + + TLK V+ + G +I + NGK I E+ + +N+ Sbjct: 268 DIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENF 327 Query: 297 TIRITDRINFDQKS 310 +RIT+ ++ ++ Sbjct: 328 GVRITEIVSPKERL 341 >gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga sp. RQ2] gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga sp. RQ2] Length = 346 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 40/314 (12%), Positives = 101/314 (32%), Gaps = 33/314 (10%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88 + + +G + + D+ I+ + + K ++ F V Sbjct: 28 EEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYT 87 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + LV + + ++G S E + + + + + + + L++ Sbjct: 88 EGLEGLNVLVLDKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQMMGSAATSLSE 147 Query: 149 CISTTQESSPNLEDFYDIDYLK-KNTNRL--SNEFVTTINMNMTIENVA-SSFVLIIPQE 204 + T SP + + D + + V + M IE + S F +I + Sbjct: 148 LLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEMEIEGLPKSKFYQVISAD 207 Query: 205 TLLKTTLISLSSQNKSEN----------------------------QSEDLIDPFARKTY 236 + K Q++++ + ++ Sbjct: 208 LVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLL 267 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + + + TLK V+ + G +I + NGK I E+ + +N+ Sbjct: 268 DIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENF 327 Query: 297 TIRITDRINFDQKS 310 +RIT+ ++ ++ Sbjct: 328 GVRITEIVSPKERL 341 >gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA] gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA] Length = 370 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 39/333 (11%), Positives = 99/333 (29%), Gaps = 54/333 (16%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90 + + +G + + ++ V+I+ + I F+ + +S Sbjct: 34 KDLLGEIGNISMGSASTALYQLINKQVNITTPKVKVTTLKEIKDGFEYPNIILDVEYVSG 93 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + ++G + + + ++ + I + + Sbjct: 94 ITGRNILIMQTTDAAVIANLMMGGDGQVNTSELSEIEVSAVQEAMNQMIGSAATSMATMF 153 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKT 209 + SP + + +E + + ++TIE + S+ + I+P T K Sbjct: 154 AREVNISPPKSKIWKDMNENISETIPEDEPIVEVCFDLTIEGLLQSNMMQILPINTAKKI 213 Query: 210 TLISLSSQNKSEN--------------------------QSEDLIDPFARK--------- 234 I + + N E + K Sbjct: 214 VSIMMGEDQEVANEIDDSYDSSDIYKEEYNIEEKPIINTVEERAVKNIVEKPVEVHGATF 273 Query: 235 -----------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + + + K ++KD++ L G +I + + Sbjct: 274 EPLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEPVEV 333 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK+I E+ V +N+ +RIT ++ + Sbjct: 334 LINGKKIAYGEVVVVDENFGVRITSIVSGADRI 366 >gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Thermoanaerobacter tengcongensis MB4] Length = 366 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 41/354 (11%), Positives = 94/354 (26%), Gaps = 49/354 (13%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + + L L K + I +G + + V I+ Sbjct: 9 SQEEINALLKGLQEETQEKKELTDEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKV 68 Query: 66 QSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + F +V Q + + + + ++G + Sbjct: 69 SVLSWDQLKEEFNIPYVGVQVEYTEGLKGYNLLILKKEDALKITDLMMGGDGKVEEGEIT 128 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 + + + I + L+ ++ SP D V + Sbjct: 129 DLHLSAVGEAMNQMIGSAATSLSTLLNKKINISPPKAFIVDFSTALPEDVAFPQGDVVRV 188 Query: 185 NMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQNK-----------SENQSEDLIDPFA 232 M + ++ S + +IP + + L + + + A Sbjct: 189 AFKMEVGDIIDSEIMQLIPFDFAKELVKSVLQQATTSTSPPAEVKEMKKESKGESEEKMA 248 Query: 233 RK------------------------------------TYQLNVNIDTRINLKKTTLKDV 256 + + + I + K +KD+ Sbjct: 249 SEKAIKKEEKVNVSPVIFQNFDEEPQQEAKGESKNLDLILDVPLTITVELGKTKKLIKDI 308 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + L G +I + ANGK I E+ + +N+ +RITD ++ ++ Sbjct: 309 LELTEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHPGKRI 362 >gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C str. Eklund] gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C str. Eklund] Length = 388 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 40/344 (11%), Positives = 101/344 (29%), Gaps = 66/344 (19%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASL 88 T + + +G + + V+I+ + + ++F+ Sbjct: 43 TEKDLLGEIGNISMGSASTALSTIIGSAVNITTPQVSTTTLKELRNTFEVPNIALEVKYT 102 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISA 144 S + + ++G + L+ +E+ + I + Sbjct: 103 SGIVGGNLLVMKIPDAAVIANLMMGGDGRIEEKS---ELTEIEESAVSEAMNQMIGSAAT 159 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQ 203 + SP + + + E + ++ +TI + V S+ + I+P Sbjct: 160 SMATMFGREVNISPPVSKIWRDTSKPLSETISEEEEIVEVSFKLTIGDLVDSNIMQILPI 219 Query: 204 ETLLKTTLISLSS------------QNKSENQSEDLIDPFARK----------------- 234 +T K I + Q Q ++ + + Sbjct: 220 KTAKKIVSIMMGEEEKQEVPQSNIHQQGEREQVQNSQEQLNKNVVPKPVETYSQPQVSSP 279 Query: 235 ----------------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + + I + K ++K+V+ L G +I Sbjct: 280 QPQVNIQKATFAPLGESPINGAPQNIDLILDVPLEISVVLGKTKKSIKEVLELGTGSLIE 339 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NGK+I E+ V +N+ +RI + ++ +++ Sbjct: 340 LDKLAEEPVEIYVNGKKIAYGEVVVVDENFGVRIMNIVSGEERV 383 >gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653] gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653] Length = 366 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 41/354 (11%), Positives = 95/354 (26%), Gaps = 49/354 (13%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + + L L K + I +G + + V I+ Sbjct: 9 SQEEINALLKGLQEETQEKKELTDEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKV 68 Query: 66 QSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + F +V Q + + + + ++G + Sbjct: 69 SVLSWDQLKEEFNIPYVGVQVEYTEGLKGYNLLILKKEDALKITDLMMGGDGKVEEGEIT 128 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 + + + I + L+ ++ SP D V + Sbjct: 129 DLHLSAVGEAMNQMIGSAATSLSTLLNKKINISPPKAFIVDFSTALPEDVAFPQGDVVRV 188 Query: 185 NMNMTIENVA-SSFVLIIPQETLLKTTLISLSS-----------QNKSENQSEDLIDPFA 232 M + ++ S + +IP + + L + + + + A Sbjct: 189 AFKMEVGDIIDSEIMQLIPFDFAKELVKSVLQQTTTSTSPPAEVKEMKKESKGESEEKMA 248 Query: 233 RK------------------------------------TYQLNVNIDTRINLKKTTLKDV 256 + + + I + K +KD+ Sbjct: 249 SEKAIKKEEKVNVSPVIFQNFDEEPQQEAKGESKNLDLILDVPLTITVELGKTKKLIKDI 308 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + L G +I + ANGK I E+ + +N+ +RITD ++ ++ Sbjct: 309 LELTEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHPGKRI 362 >gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10] gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga naphthophila RKU-10] Length = 346 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 40/314 (12%), Positives = 101/314 (32%), Gaps = 33/314 (10%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88 + + +G + + D+ I+ + + K ++ F V Sbjct: 28 EEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYT 87 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + LV + + ++G S E + + + + + + + L++ Sbjct: 88 EGLEGLNVLVLDKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQMMGSAATSLSE 147 Query: 149 CISTTQESSPNLEDFYDIDYLK-KNTNRL--SNEFVTTINMNMTIENVA-SSFVLIIPQE 204 + T SP + + D + + V + M IE + S F +I + Sbjct: 148 LLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEMEIEGLPKSKFYQVISAD 207 Query: 205 TLLKTTLISLSSQNKSEN----------------------------QSEDLIDPFARKTY 236 + K Q++++ + ++ Sbjct: 208 LVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLL 267 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + + + TLK V+ + G +I + NGK I E+ + +N+ Sbjct: 268 DIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENF 327 Query: 297 TIRITDRINFDQKS 310 +RIT+ ++ ++ Sbjct: 328 GVRITEIVSPKERL 341 >gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30] gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10] gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20] gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30] gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10] gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20] Length = 352 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 45/323 (13%), Positives = 105/323 (32%), Gaps = 39/323 (12%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 +++ I +G + +D V I+ KF I++ V + Sbjct: 26 EEQVKVDIIGEVGNISMSQAATTLSSILDRRVSITTPRVSKIKFGEILNDLVAPKVATTV 85 Query: 87 SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 + + I + + ++G + ET + + + + I S Sbjct: 86 EFKEGLLGSNLMLLEVKDAIVIADLMMGGTGETSNTQFTELELSAVAEAMNQMIGTASTS 145 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQE 204 + IS + P + ++ + + + E + I+ ++ +E + S + I Sbjct: 146 MATMISRKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIESKIMQIFTDP 205 Query: 205 TLLKTTLISLS---------------------------SQNKSENQSEDLIDPFA----- 232 + LS + +K S+ A Sbjct: 206 VVNDIASAMLSDEATVVTRETPTPQPTAPVAAPTPEPAAASKPVEVSKPAFQTLASSGVS 265 Query: 233 -----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + +++ + K T+KD+++ G VI + NGK I + Sbjct: 266 DGDNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATG 325 Query: 288 ELGRVGKNYTIRITDRINFDQKS 310 E+ + +N+ +RIT+ ++ Q+ Sbjct: 326 EVVVINENFGVRITNILSQKQRI 348 >gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga mobilis SJ95] gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga mobilis SJ95] Length = 372 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 48/346 (13%), Positives = 109/346 (31%), Gaps = 52/346 (15%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 P + + + + + + ++I Y KF +I Sbjct: 26 DPKESEETSTVDEKLDALLDMIGEIANITMGSGATTLSTLLRRKIEIQYPQTDIIKFKNI 85 Query: 74 IHSFK-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 I +F+ EN V + + NL + + +LG + + + R L + Sbjct: 86 ITNFEGENVVVTVEYKKGLYGLNTLVLPLNLTNIIADLMLG---KDLENIEERELDDISL 142 Query: 133 KL----AKRTIAQISAVLNQCISTTQESSPNLEDF--YDIDYLKKNTNRLSNE-FVTTIN 185 + + S L+ + T + SP + ++ E +V +I Sbjct: 143 SAVSEAMNQMMGTASTALSDFLKTNIDISPPSSRVVNFSEANIEFPPIETDKEAYVISIK 202 Query: 186 MNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK---------- 234 N+ I + ++F IP + K + + K+ E + +K Sbjct: 203 FNVKINGIAETTFWQFIPMKFAQKIRELVEKTFGKTTEDEESSKNSNTQKRSNSNVIKEK 262 Query: 235 ------------------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + + + K L++++ L G + Sbjct: 263 KVKVQPVEFGEFEKKEEPISPNIDLSKLELLLDVPLELKVELGSTKLNLREILELHEGSM 322 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 I + ANG+ I E+ + +N+ IR+T+ ++ ++ Sbjct: 323 IQLNKLAGEPLDIYANGRLIARGEVVVIDENFGIRVTEIVSLRERM 368 >gi|973194|gb|AAB00543.1| FliM' [Treponema pallidum] Length = 155 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDP 230 +E V + + + IP T+ + + + + Sbjct: 1 IVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGV 60 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCEL 289 K +++++ + + +++D++ L++G +I +LS ++ + C+ Sbjct: 61 LRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQP 120 Query: 290 GRVGKNYTIRITDRINF 306 G VGK +I +RI Sbjct: 121 GVVGKKIAAQILERIES 137 >gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase [Carnobacterium sp. 17-4] gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase [Carnobacterium sp. 17-4] Length = 359 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 40/333 (12%), Positives = 99/333 (29%), Gaps = 51/333 (15%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T I +G + + V I+ KF II + V + Sbjct: 31 DQTQTDIIGEIGNISMSQAATTLSSILSRRVTITTPVVSCLKFQEIIDASVTPKVVTTIE 90 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQI 142 + + + + I + + ++ + + +E + + Sbjct: 91 FKKGLAGSNLLMMNEKDAIIIADLMMDGDGNA----EGKEFTELELSAVGEAMNQMMGSA 146 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201 + + + + P + + + V I MT+++ + S + I Sbjct: 147 ATAMATMLERIVDILPPEVEVWKNQEQVNYDRISGDTTVCKIAFQMTVDDLIESEIMQIF 206 Query: 202 PQETLLKT--------------------------TLISLSSQNKSENQSEDLIDPFARK- 234 ET+ + + ++ + F Sbjct: 207 TLETVRNISNIVLADEGEVITDRELPKAEEMTAPIEAVSQATSNADGKIGIQKPEFQELT 266 Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + + + K T+KD+++L G V+ + NG Sbjct: 267 HAGSLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNG 326 Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 K I E+ + +++ IRIT+ ++ +Q+ +K+ Sbjct: 327 KLIAEGEVVVINESFGIRITNILSKEQR-IKHL 358 >gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella australiensis 50-1 BON] gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella australiensis 50-1 BON] Length = 366 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 42/357 (11%), Positives = 93/357 (26%), Gaps = 62/357 (17%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 +RGQ +S +L + + +G + + V I Sbjct: 14 LRGQQSPSQSS--DDAILTDI---------EKDALGEIGNISMGTAATTLSTLLRNKVVI 62 Query: 61 SYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + + FV + V + + ++G I Sbjct: 63 TTPRVDITTMNELGKEYPIPFVAVEVKYTQGLEGVNLLILKEEDVKLITDLMMGGDGSNI 122 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 + + + + + + L+ SP + SNE Sbjct: 123 ADEISDLHLSAIGEAMNQMVGSSATSLSTMFDKNINISPPKAFVINFTDESPYDAFDSNE 182 Query: 180 FVTTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF------- 231 + I +M I + S + ++P + + L K+ + Sbjct: 183 PLVRIAFSMEIGTLLKSEMMQLLPIDFAKELVNNLLGGAAKAPDNEPLQKQEVTQMPPIE 242 Query: 232 ------------------------------------------ARKTYQLNVNIDTRINLK 249 + + + + Sbjct: 243 SEKPEIKQAVVNKTESEKVVKAQPVVFQQLNNEAPEVLQGSNMNLIMDIPLQVTVELGRT 302 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 K T+KD++ L G VI + NGK + E+ + +N+ +RI + I+ Sbjct: 303 KKTVKDILELGTGSVIELDRLAGEPIDILVNGKLVARGEVIVIDENFGVRIIEMIDQ 359 >gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 354 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 47/340 (13%), Positives = 99/340 (29%), Gaps = 56/340 (16%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q SP+ +L+ L ++ FL + K D++ Sbjct: 33 QKEVPGMSPVDRDILSDLLASCFQVA--GNTLGAVLSRSSAFLNPNVETKTRKDIESELK 90 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S +S + S + + S + + +++G Sbjct: 91 SGSFLLYSTLSGSV--------------NGRVVLAMSAENAVKISNSMMGG-------FD 129 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVT 182 + L + + + ++ + L IST N + L + E + Sbjct: 130 SGELDEAQMQTLRDSLTPVMGALISQISTKTGGGVNGSPSETRNVTSPAALVLPDGETLI 189 Query: 183 TINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS--------------------QNKSE 221 + N+TIEN+ S ++ T + S S Sbjct: 190 RVFFNLTIENIPSFRVQFLLSLSTASDLLNLYRRSGSAGGDMSGMGMGGMGGMGMAPGSM 249 Query: 222 NQSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + +++ + K +KD++ L G +I Sbjct: 250 SVKSVAFPNLGTASGASNTPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKL 309 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L NGK I E+ + +N+ +R+TD ++ + Sbjct: 310 AGEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPIDRI 349 >gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Bacillus pumilus ATCC 7061] gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Bacillus pumilus ATCC 7061] Length = 374 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 28/339 (8%), Positives = 98/339 (28%), Gaps = 56/339 (16%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 + +G + ++ V+I+ + + S + F Sbjct: 32 SAMEQDAIGEIGNISFGSSATALSTLLNQKVEITTPTVTVIQKSMLNEEFPHPYVAIEVN 91 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 +S++ + + + ++G + + ++ + + + + Sbjct: 92 YTEGFSASNLLVVQQTDAAVIADLMMGGDGTNADPSLSEIHLSAVQEAMNQMMGSAATSM 151 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII----- 201 + + + SP + D+ + + E + ++ + I + S ++ + Sbjct: 152 STVFNKKIDISPPRVELLDVKEGEGTDRIPAAEMLVKVSFRLKIGELIDSNIMQLYPITF 211 Query: 202 ----------PQETLLKTTLISLSSQNKSENQSEDLIDPFARK----------------- 234 P + +S+ + + P + Sbjct: 212 AKDLIAELTDPAQEEEPVQDTQVSTPEPQQAAPQTQSAPAQQAAPPKRQAKPKPAAPVNV 271 Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + ++I + + ++K+V+ L G +I Sbjct: 272 APVEFEAFSEPQHTTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLA 331 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + + E+ + +N+ +R+TD ++ ++ Sbjct: 332 GEPVDILVNKRIVAKGEVVVIDENFGVRVTDILSQSERL 370 >gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sibiricum 255-15] gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sibiricum 255-15] Length = 376 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 33/334 (9%), Positives = 94/334 (28%), Gaps = 55/334 (16%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 +G + ++ V+I+ + + + Sbjct: 40 IDALGEVGNISLGNSATALSALLNQKVEITTPHVRMITMEELRSRYPIPHVALRVGYTEG 99 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQC 149 + + + + ++G L ++ + ++ + + + ++ Sbjct: 100 FKGENVLILTQRDASVIANLMMGGDGVVDESLEMEPIALSAVQEAMNQMMGAAATSMSTV 159 Query: 150 ISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL--------- 199 S + SP +E F + E + I ++ I + S ++ Sbjct: 160 FSMRIDISPPAVEIFDFSQEKTIVDSFSLWESMVIIEFDLKIGTLIDSKIVQLAPLDFSK 219 Query: 200 ------------------IIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR-------- 233 I P + + Q + E + E + Sbjct: 220 QLIQKLFSASTTTTESAPIAPTSSQEPVREQPTAPQQQPEPRYEAPPEQKKEPVGVSPVQ 279 Query: 234 -----------------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Y + +N+ + + +++D++ L G +I Sbjct: 280 FGQFSEVQQEGPPGNIGMLYDVPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVD 339 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N I + E+ + +N+ +RIT+ +N ++ Sbjct: 340 VFVNNTLIATGEVVVIEENFGVRITEIVNTKERL 373 >gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 356 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 42/339 (12%), Positives = 95/339 (28%), Gaps = 58/339 (17%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 N SP+ +++ + G ++ +F+ + D+ S Sbjct: 36 DNLSPIDRDIISDVIGSAFQVA--GNTLGTILAKNTRFMNPATESSSSADIQKELGSKSV 93 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 FS I S + + + + ++G L Sbjct: 94 SLFSTISGS--------------LAGRVCLVMAQENAAKIAGVMMGG------MTPPGQL 133 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINM 186 + + K ++A I + I + + +L ++ + ++ Sbjct: 134 DNAQLQTLKDSLAPILGTVTAQIGMKLGGTMSGNPPEIALVNSGRDLQLPDDSSLVKTSL 193 Query: 187 NMTIENVAS-SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA------------- 232 ++ I+ V S +I I K + QS + Sbjct: 194 SLNIDGVGSFKVYYVIALSMANSILDIQKGGGQKPQQQSGGMNVNMQPNMGMGGGQGSVG 253 Query: 233 ---------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + + + K +KD++ L G +I Sbjct: 254 IKGVNFPSLATAGGGPGQTNLNLLMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLA 313 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L NGK I E+ + +N+ +R+TD ++ + Sbjct: 314 GEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPTDRL 352 >gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM 4359] gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM 4359] Length = 344 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 41/328 (12%), Positives = 106/328 (32%), Gaps = 35/328 (10%) Query: 18 LARLTGKLGD---KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 + +L G + + + +G + + +V+I+ + K ++ Sbjct: 12 IDKLLGGEAEGVLTPEEKDMIGEIGNIAMGSAATTLSMILGRNVNITVPMVREEKMKNVK 71 Query: 75 HSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 F V + +LV +++ ++G S E + + + + Sbjct: 72 SDFNGEKVVVTVEYTEGLKGLNVLVLEKSLVAAIVDLMMGGSGEVESEELDEIKLSAIGE 131 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF---VTTINMNMTI 190 + + + L++ + T SP + + D + ++ V + + I Sbjct: 132 AMNQMMGSAATSLSELLGITVNISPPKVEILNFDDPSTKFPPVVDDPEKDVAVVEFEIEI 191 Query: 191 ENVA-SSFVLIIPQETLLKT---------------------------TLISLSSQNKSEN 222 E + S F +I + + K + S S Sbjct: 192 EGLPKSKFYQVIGADLVKKMYEYFTRAHKEEAEEKKEEKKEEKKVKVEPVEFSELKPSGT 251 Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 ++ + + + + + TLK V+ + G +I + NGK Sbjct: 252 AKTEIPQDKLELLLDVPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGK 311 Query: 283 EIYSCELGRVGKNYTIRITDRINFDQKS 310 I E+ + +N+ +R+T+ ++ ++ Sbjct: 312 LIARGEVVVIDENFGVRVTEIVSPKERL 339 >gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032] gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032] Length = 374 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 28/339 (8%), Positives = 98/339 (28%), Gaps = 56/339 (16%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 + +G + ++ V+I+ + + S + F Sbjct: 32 SAMEQDAIGEIGNISFGSSATALSTLLNQKVEITTPTVTVIQKSMLNEEFPHPYVAIEVN 91 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 +S++ + + + ++G + + ++ + + + + Sbjct: 92 YTEGFSASNLLVVQQTDAAVIADLMMGGDGTNADPSLSEIHLSAVQEAMNQMMGSAATSM 151 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII----- 201 + + + SP + D+ + + E + ++ + I + S ++ + Sbjct: 152 STVFNKKIDISPPRVELLDVKEGEGTDRIPAAEMLVKVSFRLKIGELIDSNIMQLYPITF 211 Query: 202 ----------PQETLLKTTLISLSSQNKSENQSEDLIDPFARK----------------- 234 P + +S+ + + P + Sbjct: 212 AKDLIAELTDPAQEEEPVQEAQVSTPEPQQAAPQTQSAPAQQAAPPKRQAKPKPAAPVNV 271 Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + ++I + + ++K+V+ L G +I Sbjct: 272 APVEFEAFSEPQHSTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLA 331 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + + E+ + +N+ +R+TD ++ ++ Sbjct: 332 GEPVDILVNKRIVAKGEVVVIDENFGVRVTDILSQSERL 370 >gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P phosphatase fliY) (Flagellar motor switch protein fliY) [NC10 bacterium 'Dutch sediment'] Length = 324 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 39/316 (12%), Positives = 92/316 (29%), Gaps = 24/316 (7%) Query: 22 TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81 + L + +T+ G L + ++F V + + S ++ Sbjct: 11 SASLAEVETVSSALERHGQLVFEASSQVFSVLCGRPVRLRFDRIVPVSPSTLLALLPGPC 70 Query: 82 V-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 V + + + + I L + +LG +L L + + A + Sbjct: 71 VGMAMQASQGLVGAEHLVWRADDAIGLAQLILGEEPTPGSELSADYLDALSEA-ANQIGG 129 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVL 199 + L + + R ++T E + + L Sbjct: 130 SLGTALRAALGKPVTVEAGTVTALTEAGVCLAVFREEASTPLLCVASLTREGLASGEVAL 189 Query: 200 IIPQETL------LKTTLISLSSQNKSENQSEDLIDPF--------------ARKTYQLN 239 I+ L ++ ++ S PF +N Sbjct: 190 IVSPSLLPETDKAQPHNDTLVAKEDTVSATSASAQAPFVPLTGGERVGPNNGIDMLLDVN 249 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + + ++D++ L G ++ + + N K I E+ + +N+ +R Sbjct: 250 LQVSVELGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEVIIIDENFGVR 309 Query: 300 ITDRINFDQKSLKNFL 315 +T I +KN Sbjct: 310 LTS-ITSVADRIKNLR 324 >gi|256370968|ref|YP_003108792.1| surface presentation of antigens (SPOA) protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007552|gb|ACU53119.1| surface presentation of antigens (SPOA) protein [Acidimicrobium ferrooxidans DSM 10331] Length = 302 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 33/270 (12%), Positives = 88/270 (32%), Gaps = 7/270 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + ++ L + + + V + + ++ + + Sbjct: 24 DRAEQRGLELLVENALRPAATLMGASLRRGVRLELGRMDQLPWEQVVAQQDGPALVISFA 83 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L S + + + LL+ + R+L+ +E+ L + + + L Sbjct: 84 LVPLGSRGVLRFGADAALRLLDLR---LGGDGSPIEPRALTELEQGLLVQVFSDLLVQLA 140 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL 206 + T + L+ L+ E + + + I + + S L +P L Sbjct: 141 SSLQTLLDV--RLDRVGAETSLEFVQVISPGEMCLVVPIALGIGDELESELTLYLPYSML 198 Query: 207 LKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + ++ D D A + + + + + R + + ++ L G V+ Sbjct: 199 RPVVELIAQRAIVAVDRGGDTFRDLLAARLHDVRLEVSVRFEPTSISSRTLLELAPGDVV 258 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKN 295 P HR+ A + + ++ +G+ G Sbjct: 259 PLGHRQGQPAWVIVDRTRLHRAVMGQSGSR 288 >gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 353 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 48/339 (14%), Positives = 98/339 (28%), Gaps = 55/339 (16%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q SP+ +L+ L ++ FL + K DV+ Sbjct: 33 QKEVPGMSPVDRDILSDLLSSCFQVA--GNTLGAVLSRSSAFLNPNVETKSRKDVESELK 90 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S S + S + + S + + +++G Sbjct: 91 SGSFLLCSTLSGSV--------------NGRIVLVMSAENAVKIANSMMGG-------FE 129 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVT 182 + L + + + ++ + L IST N + L + E + Sbjct: 130 SGELDEAQIQTLRDSLTPVMGALISQISTKTGGGVNGSPSETRNVTSPAALVLPDGETMV 189 Query: 183 TINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS-------------------QNKSEN 222 + N+TIEN+ S ++ T + S S + Sbjct: 190 RVFFNLTIENIPSFRVQFLLSLSTASDLLNLYRRSGSVGGDMSNMGMGGMGMGASPGSMS 249 Query: 223 QSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + +++ + K +KD++ L G +I Sbjct: 250 VKSVAFPNLGTASGASNTPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLA 309 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L NGK I E+ + +N+ +R+TD ++ + Sbjct: 310 GEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPIDRI 348 >gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 353 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 48/339 (14%), Positives = 98/339 (28%), Gaps = 55/339 (16%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 Q SP+ +L+ L ++ FL + K DV+ Sbjct: 33 QKEVPGMSPVDRDILSDLLSSCFQVA--GNTLGAVLSRSSAFLNPNVETKSRKDVESELK 90 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 S S + S + + S + + +++G Sbjct: 91 SGSFLLCSTLSGSV--------------NGRIVLAMSAENAVKIANSMMGG-------FE 129 Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVT 182 + L + + + ++ + L IST N + L + E + Sbjct: 130 SGELDEAQIQTLRDSLTPVMGALISQISTKTGGGVNGSPSETRNVTSPAALVLPDGETMV 189 Query: 183 TINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS-------------------QNKSEN 222 + N+TIEN+ S ++ T + S S + Sbjct: 190 RVFFNLTIENIPSFRVQFLLSLSTASDLLNLYRRSGSVGGDMSNMGMGGMGMGASPGSMS 249 Query: 223 QSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + +++ + K +KD++ L G +I Sbjct: 250 VKSVAFPNLGTASGASNTPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLA 309 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L NGK I E+ + +N+ +R+TD ++ + Sbjct: 310 GEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPIDRI 348 >gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1] gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1] Length = 411 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 38/340 (11%), Positives = 93/340 (27%), Gaps = 59/340 (17%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88 +G + E + V+I+ + + SF ++ + Sbjct: 65 EEMDALGEIGNISMGSASTTLSELLSQKVNITSPRVKIQTKQQLFDSFNIPYLVIKVDFN 124 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + N T+ ++G + + + + + I + L+Q Sbjct: 125 EGLNGYNVLVIKLNDAATMASLMMGGDGTPMSEEISELEISAASEAMNMMIGTAATSLSQ 184 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRL-SNEFVTTINMNMTIENV--ASSFVLIIPQET 205 T SP + + + ++ +M I ++ ++ + Sbjct: 185 MFQRTINISPPQTNLLRSKGDPLAQPPQDIEDVIVVVSFDMKIGDLVDTEIMQIMSVETA 244 Query: 206 LLKTTLISLSSQNKSENQ--------------------SEDLIDPFA------------- 232 + L+ +E Q + D A Sbjct: 245 KEEAHLLLKDIMGGTEEQVEAPMVPTEAATSATSIPGSDDRESDELAGIMMQETAPPPTP 304 Query: 233 ----------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + + K +KDV+ + G V+ Sbjct: 305 AMPPQAAPIKQTSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSL 364 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG + + E+ V +N+ IRIT+ I+ ++ Sbjct: 365 ADEPVDILVNGTLVATGEVVVVNENFGIRITNIISPMERV 404 >gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str. Alaska E43] gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str. Alaska E43] gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 383 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 39/343 (11%), Positives = 104/343 (30%), Gaps = 60/343 (17%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + + ++ +V+I+ + SF+ V Sbjct: 42 KDLLGEIGNISMGSASTALYQIINQNVNITTPVVSLTTLKDMKASFETPNIVLDVEYTEG 101 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQC 149 + + + ++G + + + ++ + I + + Sbjct: 102 IIGRNILVMKTDDAAVIANLMMGGDGQVSENPELSEIEVSAVQEAMNQMIGSAATSMATM 161 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL-- 206 S + SP + +E + ++ + I + V S+ + I+P T Sbjct: 162 FSRRVDISPPTSKLWKEKSEPITETLSEDEEIVRVSFRLIIGDLVDSNIMQILPLNTAKK 221 Query: 207 -----------------------LKTTLISLSSQNKSENQSEDLIDPFARK--------- 234 K + + + + ++E + P Sbjct: 222 IVSIMMGEEESSSVATDPKKVVEEKPVVKATTQKAEAEKRESIQAKPIVEAPRVQQPIEV 281 Query: 235 ----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + ++I + K ++KD++ L G +I + Sbjct: 282 HEAAFETLVPGDTAQVPKNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAE 341 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + NGK+I E+ V +N+ +RIT ++ + + +K+ Sbjct: 342 EPVEILVNGKKIAYGEVVVVDENFGVRITSIVS-NAERIKSLR 383 >gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16] gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16] Length = 395 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 31/335 (9%), Positives = 97/335 (28%), Gaps = 57/335 (17%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSS 90 + +G + ++ V+I+ + K + F V Sbjct: 58 QDTIGEIGNISFGSSATALSALLNQKVEITTPVVSAVKSDMLRQLFPRPNVIVHVKYTEG 117 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + + + +LG + E + + ++ + + S ++ Sbjct: 118 FEGSNLFVITTDDAAIIADLMLGGNGENPDPELSEMHLSAVQEAMNQMMGSASTSMSTLF 177 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM---TIENVASSFVLIIPQE--- 204 + + SP + + D + E + I+ ++ + + ++ +P Sbjct: 178 NRRVDISPPKVEVIEFDEQSRTEYVSDGEDLIAISFSLRVGDLIDSKLMQLISVPFSKDY 237 Query: 205 -------------------------------------------------TLLKTTLISLS 215 + ++ Sbjct: 238 ANALLGGGATAEPPVQEAEPLPEPAPAIGGLGDGTSAERVNQHIGQRVKDAEQVVEKAVF 297 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S ++ E + + + + + K T+++++++ G +I Sbjct: 298 SNFETTKPDEAEMQNL-DMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLAGEPV 356 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K I E+ + +N+ +RITD ++ + Sbjct: 357 DVLINDKLIAKGEVVVIDENFGVRITDIVSKKDRL 391 >gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus TCF52B] gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus TCF52B] Length = 365 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 46/349 (13%), Positives = 105/349 (30%), Gaps = 53/349 (15%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 LL +L + + + +G + + VDI+ + K S I Sbjct: 13 DSLLNQLNEDEDLTEIEKDMFGEIGNIIMGSGTTALSTLLGRKVDITVPTVDLKKISEIK 72 Query: 75 HSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 + LV + ++G + E + + + + Sbjct: 73 KEVTGKNAVVSIHFKGAIEGLNALIIPQMLVAQIANIMMGGTGEVENEEVDEISLSAVSE 132 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDF--YDIDYLKKNTNRLSNEFVTT-INMNMTI 190 + + + L+ + + +P + +D D + S++ V +N + I Sbjct: 133 AMNQMMGAAATSLSDMLKKPVDITPPTVELIDFDGDNVNFPPIATSDDAVVAKVNFKLVI 192 Query: 191 ENVA-SSFVLIIPQETLL------------------------------------------ 207 E + + F L +P E + Sbjct: 193 EGLEPADFFLAMPPEFVKKLYSMIFESEKQEKVESSAAGTSSPVSTQNYAEHSATTTKNV 252 Query: 208 ---KTTLISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKI 261 ++ + Q+ + + + +N+ + K TLK V+ L + Sbjct: 253 EKNPVSVSPVQFQSFESGGTVKSTGEIPDRIQALLDIPLNVVVELGKTKLTLKQVMELSV 312 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +N+ +RIT+ + ++ Sbjct: 313 GSLIELDKLTGEPVDIIVNGKLIARGEVVVIDENFGVRITEIVTPQERF 361 >gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4] Length = 388 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 37/372 (9%), Positives = 100/372 (26%), Gaps = 70/372 (18%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + ++ P ++L +G + ++ VDI+ Sbjct: 18 GTADSSSEPKQKVVLEDYLSPFEQDA-----LGEIGNISFGSSATALSTLLNQKVDITTP 72 Query: 64 SCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + + F + + + + + + + +LG Sbjct: 73 TVSIIEKDKLQDEFPQPYVAIQVSYTEGFLGTNLLVIKQDDASIIADLMLGGDGLNTGTD 132 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 + ++ + + + ++ S + SP + D + + N + + Sbjct: 133 LGEIQLSAVQEAMNQMMGSAATSMSTIFSKKVDISPPIIDLMYLPEGEGVENIPDIDLLV 192 Query: 183 TINMNMTIEN-VASSFVLIIPQE-----------------------TLLKTTLISL---- 214 I+ M I + S+ + ++P Sbjct: 193 KISFKMKIGTLIDSNMMQLVPLSFAKSLVEDLTNNNNTNATKSDKIEEEPPKPSMATSTP 252 Query: 215 -----SSQNKSENQSEDLIDPFARKTYQLNVNI--------------------------- 242 S Q + Q F + VN+ Sbjct: 253 VQETQSQQPFTTYQQPQAPQHFGGQHLSQPVNVQPAEFASFGQPALQESEARNLNMLLDI 312 Query: 243 ----DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + K ++K+++ L G +I + N + I E+ + +N+ + Sbjct: 313 PLSVTVELGRTKRSVKEILELSQGSIIELDKLAGEPVDILVNNRLIAKGEVVVIDENFGV 372 Query: 299 RITDRINFDQKS 310 R+TD ++ ++ Sbjct: 373 RLTDIVSQTERI 384 >gi|126736779|ref|ZP_01752517.1| possible flagellar switch protein FliM [Roseobacter sp. CCS2] gi|126713750|gb|EBA10623.1| possible flagellar switch protein FliM [Roseobacter sp. CCS2] Length = 364 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 96/288 (33%), Gaps = 12/288 (4%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LL R+T G + ++SS L K + + L + + + + ++ + Sbjct: 9 LLRRMTRPQGQEVADNPLTSSRAVRLA--LTKAANDTVGLVLTVQSVAEEVTSLDDMLGT 66 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + I + +LE + P R+ + +K L Sbjct: 67 LADELMLVALE-RDGGLAGLIALDMEMRAAVLEMETMGAVLAHP-AEARAPTLTDKTLCD 124 Query: 137 RTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 + + + + + ++ + I+ + L++ + +++ + Sbjct: 125 PLLQAFLSAFPLAVLDTPLEGWMDSVVLGHKIESTRAAGLVLADRDYRIVRLSVDLGVAE 184 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 L+I +L + + + D F + +D ++ +L Sbjct: 185 RQAELVI----VLPVVQHAPEPET-TPETFFDWDSDFQDRVSDAPARLDALLHRFPISLA 239 Query: 255 DVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRIT 301 L++G V+P L + +G E+ +LG++G +R+ Sbjct: 240 TAQGLQVGSVLPLPGCTVNSVRLLSPDGHEVAQAKLGQIGGYRAVRLE 287 >gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168] gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168] Length = 375 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 39/339 (11%), Positives = 105/339 (30%), Gaps = 62/339 (18%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSW 91 + +G + +D V+I+ + F + ++ V +S Sbjct: 35 DVLGEIGNIAMGSAATALSTILDQKVEITTPKVEVVTFKELSQEYERPCVLVRVKYISGL 94 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + + + ++G + +L LS + + + + + +++ + ++ Sbjct: 95 EGINLLIIKEEDAMVIADLMMGGDGTSDEKLDEIHLSAIGEAMNQMMGSSSTSM-SSILN 153 Query: 152 TTQESSPNLE---DFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207 SP D +++ ++ +E V +I+ + + + + SSF I P Sbjct: 154 EVVNISPPETKYLDIDELNGKREKYLGSDDEKVVSISFRLKVGDLIDSSFKQIAPMGFTK 213 Query: 208 KTTLISLSSQN-----KSENQSEDLIDPFA------------------------------ 232 + + + +E + + A Sbjct: 214 QLAVKLVEEMGGLTAKDAEEEKGEARKTVAATASTGSASTTGQPVSGSANRVSAGEENVD 273 Query: 233 ---------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + + R+ + T+K ++ L G ++ Sbjct: 274 VKRAQFPSFDNGNTAPLPQNMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLA 333 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L NGK I E+ + +N+ R+ D I+ ++ Sbjct: 334 GEPVDLLVNGKLIAKGEVVVIDENFGFRVKDIISPMERL 372 >gi|89055183|ref|YP_510634.1| hypothetical protein Jann_2692 [Jannaschia sp. CCS1] gi|88864732|gb|ABD55609.1| hypothetical protein Jann_2692 [Jannaschia sp. CCS1] Length = 388 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 8/296 (2%) Query: 10 TSPLHPILLARLTGKLGDKKTIEKISS-SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P +L+R+ T L + + + L + + SG Sbjct: 2 SDPKQRSVLSRIVAAHLRGGTDVAALEPGLQTGLTRAIRRASLPYAVLAPQVEDAAVTSG 61 Query: 69 -KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + E + + + + + LV L+E E R + Sbjct: 62 ASLQDALDTMPEQGLTAAVEDAEGR-RGLVALDHPLVDALIEVQATGEVEKTNHPA-RKV 119 Query: 128 STVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + +++ L + + + A ++ + I + + + Sbjct: 120 TRIDEALCRDFLDLVLAAFAQETAGQAGRDWPDRMRYGSIITERAQLNLLMPERGYRVLR 179 Query: 186 MNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++T+ VL++P + + S+ + + D + +D Sbjct: 180 TSVTMGGHKTGDLVLVLPSDPAIARRGGSVEQPSAPAEAPKGWGDRMLGAISTAPMALDA 239 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN-GKEIYSCELGRVGKNYTIR 299 + L V L G ++PF H + + L G LG+V +R Sbjct: 240 VLMRTIMPLGKVEDLAQGDLVPFDHNDLSAISLEDEIGHVFARGALGQVSGRRAVR 295 >gi|168699681|ref|ZP_02731958.1| hypothetical protein GobsU_09169 [Gemmata obscuriglobus UQM 2246] Length = 283 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 82/266 (30%), Gaps = 11/266 (4%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW-SSNFFIGCSN 101 + + + + + ++ ++ + F E + + + N Sbjct: 28 CRRTNEAAVQALRYPATLQIAKVETPSAAYCLAFFPEGAISVPLAPPDAPGGGALLVFPN 87 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 ++I LL L+G + E + +R + +E L + + + + + P + Sbjct: 88 PVLIALLSGLIGEAPEAL--PADREPTPMESALIPHLVREFF--VTPFLKSWPGVEPLVV 143 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 D NE + ++ L++ + L++ S Sbjct: 144 DI-GAPAAPAAVWTGGNEHNIFVTFTLSAPYGEHPIYLLLTRSG----RWEQLAAIGLSP 198 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + ++V + + T++DV L G VI F + +G Sbjct: 199 PVTPAPKSEIESVVRAMSVEMSVILGRADLTMRDVSDLTTGDVIVFDQKVTEPLDGLVSG 258 Query: 282 KEIYSCELGRVGKNYTIRITDRINFD 307 + G VG + + D I D Sbjct: 259 ARKFRVWPGVVGDRAAV-VVDTITGD 283 >gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM 16994] gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM 16994] Length = 288 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 86/289 (29%), Gaps = 26/289 (8%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + I+ + I + + + + + Sbjct: 8 FATEAVATIEGLTGQTPTITLKEAEEISI--ISNVIPPIAQIHVSFSGAAAGRGIVMMPP 65 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 L L + +LG E + + + K ++ I ++ +++ +E Sbjct: 66 QLATALGDMMLGGDGEAQDTMSDEDMDAA-----KEIVSNIVGAMSTTLASQKELPKFTI 120 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII----------------PQET 205 +++ ++ + + + ++ S +L I P Sbjct: 121 KPERAEFIPESGEVNLDGYAKMFVFTFALGHINSLMMLAIDSTINEALTGEKAAPAPASN 180 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + SS + E + + + + RI KK LKDV+++ IG VI Sbjct: 181 SSNIFD-APSSSVPAVKLDEGEMKNI-GLIMGVKLPVRVRIGKKKMLLKDVLSMDIGSVI 238 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + I E+ V N+ ++IT I + L Sbjct: 239 ELNQLANDPLDILVDDHVIAQGEVVIVDGNFGVQITS-IGTKRDRLNKL 286 >gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans Nor1] gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans Nor1] Length = 376 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 33/338 (9%), Positives = 90/338 (26%), Gaps = 60/338 (17%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + + V I+ + I + V Sbjct: 34 KDALGEIGNICMGSAATTLSILLGRRVSITTPQVSVTTLNEIKRQYPLPYLVIEVYYSHG 93 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + ++G P N + + + + + ++ Sbjct: 94 ILGTNLLAIRQQDALIIADLMMGGDGSNPPTELNDLYMSAVSEAMNQMMGSTATSMSTVF 153 Query: 151 STTQESSPNLEDF----------------YDIDYLKKNTNR---LSNEFVTTINMNMTIE 191 + SP + I + + +E + I +N+ E Sbjct: 154 KKKVDISPPQVNVFDFGVDGNISAMAAGDEPIVSVSFRMEVEDLIDSEIMQIIPINVAKE 213 Query: 192 NVASSFVLI-----------------IPQETLLKTTLISLSSQNKS-------------- 220 V S I PQ + + + ++ Sbjct: 214 MVESLMAAIQPTPKTTTSAAPNAATSTPQPVMAPARETNFAQAQQAAALPKTHQPLTNVT 273 Query: 221 ---------ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + D + + + + + +++++ L G V+ Sbjct: 274 VQPVQFAPLKPTTPTTSDTNINLIMDVPLQVTVELGRTRKLIREILELGPGSVVELDKLA 333 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + NGK I E+ + +N+ +RIT+ ++ ++ Sbjct: 334 GEPVDILVNGKLIAKGEVVVIDENFGVRITEIVSPLER 371 >gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans Z-2901] Length = 347 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 38/313 (12%), Positives = 95/313 (30%), Gaps = 32/313 (10%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88 + G + + + V I+ + K SF+E ++ + Sbjct: 36 AEKDALGEAGNISMGSAATSLSQLVGRKVIITSPRVEVQKEKEFFASFREPYMVIEVEFT 95 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + N V + ++G ++ S ++ + + + L++ Sbjct: 96 EGLSGKNVLIIKENEVGVIASLMMGGDGTHSGEITELEQSAAQEAMNQMIASSA-TALSE 154 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207 SP + +E V I NM IE+ V + + ++ T Sbjct: 155 IFKRKINISPPRSKMINSRENDTYEPFGGHE-VVVIYFNMQIEDLVDTDIMQVMEPATAK 213 Query: 208 KTTLISLSSQNKSENQSEDLIDPFA----------------------------RKTYQLN 239 + + L+ S ++ + Sbjct: 214 EVAQMLLAKVYGSPETEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIP 273 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + ++ + + +K++++ G +I + NG + E+ VG+N+ I+ Sbjct: 274 LKVEVVLGRTRRPIKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIK 333 Query: 300 ITDRINFDQKSLK 312 I ++ ++ K Sbjct: 334 INQILSPKERLSK 346 >gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 366 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/352 (11%), Positives = 102/352 (28%), Gaps = 59/352 (16%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 LL + G + E + LY + + + +V I + + + Sbjct: 13 ALLKGIGGASKQDEDEE--LKEIASLYAQAFTNVLQLLSGGEVKIDVGESRVCGQAAFVE 70 Query: 76 SFKENF-VFSQASLSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 +++ + ++ S + L + ++G +P N + ++ Sbjct: 71 ELEKSSYLLYVVDYDAFEGWYHAFVMSERTALLLADIMMGGDGVELPDSMNDLYLSAAQE 130 Query: 134 LAKRTIAQISAVLNQCIST------------------TQESSPNLEDFYDIDYLKKNTNR 175 + + + +S E P+ E+ + + + Sbjct: 131 GLSQITGAAISEMVNLLSGRRIGIKNTSCSLKVEGWLPFELLPSSENVWVFSLNAEIKDV 190 Query: 176 --------LSNEFVTTINMNMT--IENVASSFVLII--PQETLLKTTLISLSSQNKSENQ 223 + + V ++ + + + P+ET + ++ + Sbjct: 191 GNLKLWSLMPQKIVQVLSDEIKKRVGSREQPQKRSEQGPKETGSPVSAKVSQVAREASGR 250 Query: 224 -------------------------SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 +D+ + V I R+ T+ +++ Sbjct: 251 VVGEEVSGAVEVRPAEFVPLDKQIADQDMDGHNFDLIVDVPVRITVRLGQAAKTIGEILN 310 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L G VI + NGK I E+ + +N+ +RIT+ +N + Sbjct: 311 LTPGSVIELDKMAGDPVDILVNGKLIARGEVVVIDENFGVRITEIVNRSDRI 362 >gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] Length = 401 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 41/376 (10%), Positives = 100/376 (26%), Gaps = 81/376 (21%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 P + + +G + ++ V+I+ + Sbjct: 23 DPPSETNSQDDPQLPDIEKDLLGEIGNISMGSASTALSTIINQQVNITTPVVVVTTLKEL 82 Query: 74 IHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 + F+ + + ++G + P + + L +E Sbjct: 83 KNEFEVPNVALEVKYTEGIIGENLLVMKITDAAVIASLMMGGDGKIDPDI--KELGEIEI 140 Query: 133 KL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 + I + + + SP + ++ +E V ++ ++ Sbjct: 141 SAVSEAMNQMIGSAATSMATMLMREVNISPPVSKVWNDITKPLTEGISEDEAVVKVSFSL 200 Query: 189 TIEN-VASSFVLIIPQETLLKTTLISLSS------------------------------- 216 I V SS + ++P T K I + Sbjct: 201 KIGELVDSSIMQVLPIATAKKVVSIMMGQEETAPAESAPSAPENDSTSTEPELEPQPESQ 260 Query: 217 -----------QNKSENQSEDLIDPFARKTYQLNVNI----------------------- 242 Q++ E ++ P + V + Sbjct: 261 PPIQQSQPAPAQSQMEQRTPVYEKPIETNVNKQPVEVSRASFQPLSGSQDTEVVPKNIDL 320 Query: 243 --------DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + K +KD++ L G +I + + NGK++ E+ + + Sbjct: 321 ILDVPLEISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVIDE 380 Query: 295 NYTIRITDRINFDQKS 310 N+ +RIT ++ ++K Sbjct: 381 NFGVRITGIVSNEEKI 396 >gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum nigrificans DSM 574] gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum nigrificans DSM 574] Length = 390 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 39/372 (10%), Positives = 107/372 (28%), Gaps = 62/372 (16%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTI-----EKISSSLGYLYKKFLPKIFKEKMD 55 MRGQ ++ P A L G+ T+ + +G + E ++ Sbjct: 14 MRGQLLNNANQPEQGSNQATLPPDSGEMSTLLTDEEKDALGEIGNISMGSASTTLSELLN 73 Query: 56 LDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGA 114 V I+ + + + SF+ ++ + + + + + ++G Sbjct: 74 QKVSITSPRVRVMTKTELFDSFEVPYLVIKVDFSEGLNGYNLLIIRLSDAAVMASLMMGG 133 Query: 115 SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN-- 172 T+ + + + + I + L+Q SP + Sbjct: 134 DGTTMSEEISELEISAAAEAMNMMIGTAATSLSQMFHRPINISPPQTNLLKTKSDPLVHP 193 Query: 173 -TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS------- 224 V + ++ + ++ + + L+ + +++++ Sbjct: 194 PEQIEETIVVVSFSLKIGDLVDTDIMQIMGVETAKEEANLLLMDIMGLAQDETPAPETAP 253 Query: 225 ------------------------------------------EDLIDPFARK----TYQL 238 + ++ + Sbjct: 254 AGAANANPVSPPVGNMAETPAPTAPMPTSPGIAGFSGEETFRPQNLGSLEQRNLELILDI 313 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + + K +KDV+ + G V+ + NG + + E+ V +N+ + Sbjct: 314 PLKVSVVLGRTKRPIKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVVVVNENFGV 373 Query: 299 RITDRINFDQKS 310 RIT+ I+ ++ Sbjct: 374 RITNIISPMERI 385 >gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sp. AT1b] gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sp. AT1b] Length = 376 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 43/337 (12%), Positives = 96/337 (28%), Gaps = 59/337 (17%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 +G + + V+I+ + + + Sbjct: 38 SDALGEIGNISFGNSATALSTLLQQKVEITTPVVSEVRIEALRERYPTPHVALRVGYTEG 97 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + +LG S E L LS V++ + + + L+ Sbjct: 98 IQGENVLVLTREDAAIISDLMLGGSGENVDPESLDEIRLSAVQEA-MNQMMGAAATSLST 156 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVTTINMNMTIEN-VASSFVLIIP---- 202 S + SP L + +D + +RL E + I N+ + + S+ V I P Sbjct: 157 VFSKKIDISPPLVEVFDATKNQTIIDRLELWETMVLIEFNLKVGTLIDSTIVQIAPIQFG 216 Query: 203 --------------QETLLKTTLISLS--------------------------------- 215 Q T + Sbjct: 217 KQLVDELMKATGEAQATPEPVKAQPQAEAPKPQPQAQQQAQPVAPQPSKQKSMPEVAVSQ 276 Query: 216 --SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 S++ Y + +N+ + K ++++V+ L G +I Sbjct: 277 AEFMPLQSPASQEAAPANLGLLYDVPLNVTVELGRTKKSVREVLELSQGSIIELDKLAGE 336 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + I E+ + +N+ +R+T+ I ++ Sbjct: 337 PVDIYVNQQRIARGEVVVIEENFGVRVTEIIQPHERI 373 >gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803] gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803] Length = 547 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 26/304 (8%), Positives = 93/304 (30%), Gaps = 28/304 (9%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPHVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 364 EMFKEKMDMTPPEVKFVTLREEMEYLGEAMEGDELVQITFNIEIGDLLQSKMYQILPISE 423 Query: 206 L-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNV 240 + + + + + + Sbjct: 424 AKEMVRRLLYPMVEGQEEQIEEEIEEEDIVAPVVQPIEFKEVKQIEPVYMDTSILQNVEM 483 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 N+ T++D+++L+ + + + N + EL V + +++ Sbjct: 484 NVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKV 543 Query: 301 TDRI 304 T + Sbjct: 544 TKTL 547 >gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM 771] gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum acetoxidans DSM 771] Length = 572 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 33/334 (9%), Positives = 84/334 (25%), Gaps = 55/334 (16%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV-FSQA 86 + + +G + ++ V I+ + ++ SF+ F+ Sbjct: 237 ESQEKDALGEVGNISTGSASTTLSALLNQRVQITSPRISILTETELLSSFELPFMTVKVQ 296 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + + + ++G + + + I + L Sbjct: 297 YTEGIIGFNLWVVTLRDALIIADLMMGGEGIPASNEITELEISAASEAMNQMIGTAATSL 356 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV------------- 193 + SP + + I+ M + +V Sbjct: 357 AAIFNRIINISPPETHIIRAREN--LGEIIDTHPLVVISFRMIVGDVMDTEIMQIMSVET 414 Query: 194 -----------------ASSFVLIIPQETLLKTTLISLSSQNK----------------- 219 + + P + T + + Sbjct: 415 AKYEVGLLLSGLEPAAPEMAVRVEEPVPSTEPVTNKPPENLSPMAAGGQNQTGYQSVPEE 474 Query: 220 ---SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + +N+ + K +KDV+ L G V+ + Sbjct: 475 RVSQTPADVNWDK--INLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVE 532 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG + E+ V +N+ +RIT+ I ++ Sbjct: 533 VLVNGTLVARGEVVVVNENFGVRITNVITPQERI 566 Score = 36.2 bits (82), Expect = 6.3, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 3/231 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SS 90 + + ++ V IS S + S++ +++ + Sbjct: 39 IDALGEVSNISMGTSSTTLSSLLNQQVQISGASISIMSEEEFMSSYRASYMAVRVQFVKG 98 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 S + + + ++G + N + + + I+ L Sbjct: 99 LSGFNLWLVKLHDALVMANLMMGVEGTPVTGEINELEISAASEAMNQMISTSVTGLAGMF 158 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + T + SP + + V M + + + + II ET + Sbjct: 159 NRTIDISPPQTRIINEGDTLEELVVEGPFVVLFFKMTVGDM-LDTEIIQIISVETAKEAV 217 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 +++ + S S + I K V + TTL ++ ++ Sbjct: 218 SSLMNAMDVSAGVSLENILESQEKDALGEVGNIST-GSASTTLSALLNQRV 267 >gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271] gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271] Length = 548 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 246 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 305 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 306 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 365 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 366 EMFKEKMDMTPPDVKFVTLKEEMEYLGEAMEVDELVQITFNLEIGDLLQSKMYQILPISE 425 Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241 + L + + + + +N Sbjct: 426 AKEMVRRLLYPMVEAEEEIAEEEIEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 485 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++D+++L+ + + + N + EL V + +++T Sbjct: 486 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 545 Query: 302 DRI 304 + Sbjct: 546 KSL 548 >gi|260575623|ref|ZP_05843621.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp. SW2] gi|259022266|gb|EEW25564.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp. SW2] Length = 325 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 24/249 (9%), Positives = 73/249 (29%), Gaps = 8/249 (3%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 +++ Q + ++ E + + + S +++ L+E Sbjct: 41 LEVEKLDIQRRSLTELLDMPPERALIAVLE-GPAEGLGVLVISPSILAGLIEAQTVGQVS 99 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNR 175 P+ R + + + + + + + + +D + Sbjct: 100 PRPEFA-RKPTRTDAAMVAGMLDLALEGMESLLVAEDDLVWAGGFRYASFLDDPRPLGLL 158 Query: 176 LSN--EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233 L + + +++ S +L +P + + + + Sbjct: 159 LEDVPYRLVQAQISLAGGMKTGSLMLALPADGRGR-KPRRPDAVAPQAGAALMFAAAMNE 217 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRV 292 + + ++ + L V+ LK+G V+P L+ G+ + LG+ Sbjct: 218 QVMAADCTLEAVLAKVTLPLAAVMKLKVGDVLPLGTAALDRIALTGITGQPVAVGRLGQN 277 Query: 293 GKNYTIRIT 301 +R+ Sbjct: 278 RGMRAVRVD 286 >gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Dethiobacter alkaliphilus AHT 1] gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Dethiobacter alkaliphilus AHT 1] Length = 541 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 33/322 (10%), Positives = 92/322 (28%), Gaps = 44/322 (13%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 + +G + +D V+I+ + + + V Sbjct: 215 AISADEGDTIAEIGNISMGAAATALSTLLDNRVNITTPRISITTLRQVREQYPQPCVVVN 274 Query: 86 ASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 S + + ++G + + + + + + S Sbjct: 275 VRYRTGLSGENVLIMGEQDAALIAAVMMGEPTDGPLGELDEIRLSAVSEAMNQMMGSSST 334 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQ 203 L + S + +P + ++ + + + ++ + ++ M + ++ S + +IP Sbjct: 335 ALAEMFSREVDITPPVTEYGNPAE-EADLTVNIDDPMVQVSFRMEVADILDSDLIQLIPL 393 Query: 204 ETL-LKTTLISLSSQNKSENQS-------------------------------------- 224 + ++ + + EN Sbjct: 394 KFAREMAGVLLGAFAGEEENHDFAQETEPVVEPLLPNVEDVEPVMSTEPQDWLQESSPES 453 Query: 225 --EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 + + V I + +K LK+++ K G V+ + ANGK Sbjct: 454 TLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDILANGK 513 Query: 283 EIYSCELGRVGKNYTIRITDRI 304 + E+ + + I+IT+ + Sbjct: 514 LVARGEVVHYNERFGIKITEIM 535 >gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 4222] gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 4222] Length = 544 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 26/305 (8%), Positives = 96/305 (31%), Gaps = 32/305 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419 Query: 203 -QETLLKTTLISLSSQN---------------------KSENQSEDLIDPFARKT-YQLN 239 E + + + + + Sbjct: 420 IYEAKEMVRRLLYPMVEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVE 479 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ T++D+++L+ + + + N + EL V + ++ Sbjct: 480 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 539 Query: 300 ITDRI 304 +T + Sbjct: 540 VTKSL 544 >gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134] gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134] Length = 545 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVNGFFGV 539 Query: 299 RITDRI 304 ++T + Sbjct: 540 KVTKSL 545 >gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO] gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO] Length = 343 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 91/297 (30%), Gaps = 37/297 (12%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + +V ++ ++ SF E V Q F I +L Sbjct: 42 TAALGIVIGREVKVTLVEISQKTLKDLLSSFDETIVAVQIEFSDGLKGEFLILFPQSLGA 101 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS---TTQESSPNLED 162 + + ++G S E + + + + + + L++ + + +L Sbjct: 102 RIADMMMGGSGEPESFELDEVRLSAITETMNQMMGSSTTSLSEQTKKKVSISKLKVDLVK 161 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS--------- 213 + L N ++ I++ + S +LI P I Sbjct: 162 KDEEPVLNFNLAQVLAYVAYEIDLE---NSHKSKILLIAPALFFKDIYKIIHPAQEPEKE 218 Query: 214 --------------------LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 SQ + + + D + + + + K TL Sbjct: 219 KEQKREEEKVKVQPVQFQEFDQSQRAAVSTPSEFSDKL-ELLLDVPLKVVVELGRAKMTL 277 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 K V+ + IG +I + NG+ I E+ V +N+ +RIT+ + Q+ Sbjct: 278 KQVLEMNIGSLIELDKLTGEPVDILVNGRLIAKGEVVVVDENFGVRITEIVTPKQRI 334 >gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pakistani str. T13001] Length = 546 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVNGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 544 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 26/305 (8%), Positives = 96/305 (31%), Gaps = 32/305 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419 Query: 203 -QETLLKTTLISLSSQN---------------------KSENQSEDLIDPFARKT-YQLN 239 E + + + + + Sbjct: 420 IYEAKEMVRRLLYPMVEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVE 479 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ T++D+++L+ + + + N + EL V + ++ Sbjct: 480 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 539 Query: 300 ITDRI 304 +T + Sbjct: 540 VTKSL 544 >gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3] gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3] Length = 547 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 29/305 (9%), Positives = 92/305 (30%), Gaps = 30/305 (9%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + +S H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVESINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYD--IDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQE 204 + + +P F + + +E V I N+ I ++ S I+P Sbjct: 364 EMFQEKMDMTPPNVKFVTLKEEMEYLGESMKVDELV-QITFNLEIGDLLQSKMYQILPIS 422 Query: 205 TL-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLN 239 + + + + + Sbjct: 423 EAKEMVRRLLYPMMEEEEEIVTEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVE 482 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ T++D+++L+ + + + N + EL V + ++ Sbjct: 483 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 542 Query: 300 ITDRI 304 +T + Sbjct: 543 VTKSL 547 >gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842] gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842] Length = 545 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 26/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419 Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238 + L + + + + Sbjct: 420 ISEAKEMVRRLLYPMVEEEETATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539 Query: 299 RITDRI 304 ++T + Sbjct: 540 KVTKSL 545 >gi|218662604|ref|ZP_03518534.1| flagellar C-ring motor switch protein [Rhizobium etli IE4771] Length = 169 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 68/133 (51%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G + Sbjct: 12 AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKGETGLDVTVNYLGCEIGYKN 71 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 H+I N A+L +WS N + C N VITL+ + +R LS +E Sbjct: 72 HLIDDLSANVTLVDATLRNWSQNVTLACGNGFVITLMGAPARRHRRYDREPADRLLSIIE 131 Query: 132 KKLAKRTIAQISA 144 LA +I+ Sbjct: 132 LDLAVMVFDKIAK 144 >gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241] gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241] Length = 546 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423 Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241 + L + + + + +N Sbjct: 424 AKEMVRRLLYPMVEAEEEITEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++D+++L+ + + + N + EL V + +++T Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543 Query: 302 DRI 304 + Sbjct: 544 KSL 546 >gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar sotto str. T04001] gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar sotto str. T04001] Length = 545 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539 Query: 299 RITDRI 304 ++T + Sbjct: 540 KVTKSL 545 >gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407] gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407] gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 545 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539 Query: 299 RITDRI 304 ++T + Sbjct: 540 KVTKSL 545 >gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2] gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2] gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 546 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676] gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185] gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W] gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876] gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876] gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W] gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185] gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676] Length = 545 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539 Query: 299 RITDRI 304 ++T + Sbjct: 540 KVTKSL 545 >gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 546 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987] gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC 10987] Length = 546 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423 Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241 + + + + + +N Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++D+++L+ + + + N + EL V + +++T Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543 Query: 302 DRI 304 + Sbjct: 544 KSL 546 >gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550] gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550] Length = 546 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 26/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETLLKTTLISLSSQ-----------------------NKSENQSEDLIDPFARKT-YQL 238 + L + + + + Sbjct: 421 ISEAKEMVKRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24] gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24] Length = 546 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 546 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423 Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241 + + + + + +N Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++D+++L+ + + + N + EL V + +++T Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543 Query: 302 DRI 304 + Sbjct: 544 KSL 546 >gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1] gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1] Length = 546 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423 Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241 + + + + + +N Sbjct: 424 AKEMVRRLLYPMVEAEEEVAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++D+++L+ + + + N + EL V + +++T Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543 Query: 302 DRI 304 + Sbjct: 544 KSL 546 >gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200] gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200] Length = 545 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 420 IAEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539 Query: 299 RITDRI 304 ++T + Sbjct: 540 KVTKSL 545 >gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15] gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15] Length = 546 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264] gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264] gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] Length = 546 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|126741268|ref|ZP_01756947.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6] gi|126717673|gb|EBA14396.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6] Length = 458 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 31/290 (10%), Positives = 83/290 (28%), Gaps = 19/290 (6%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 LAR + K S + ++ + E DL + + + + Sbjct: 17 LARKLAVSKEGKGASN-GSFTLKVLRRSFARAASELCDLPLAVLAGRQSNRAPEELSDLL 75 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + LV L++ R+ + + + Sbjct: 76 SDQHLLIVLDGPDGR-VGAATMDAALVTALIQKQTIGQIMGKA-PSERNYTPTDAAMTAG 133 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENV 193 + + + + + + + + ++ +++ + + Sbjct: 134 FLELSFEKVLGLLDGQADQTLFKGYRFGAQIDSVRNLVLGLEAEDYRLISMTVDIALGTM 193 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 S L++P+ T + L ++ L + + + L Sbjct: 194 QGSINLLLPEPTPEELGLAGAAA-----------GPSLGSSMGNLRAELSAVLCKMRLPL 242 Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302 ++ LK G VIP +S G+ I +LG++ + +R+ + Sbjct: 243 NELSNLKPGDVIPLEQAFLYETDLISIGGQSIAQGKLGQMNGSRAVRLNE 292 >gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97] gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97] Length = 546 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423 Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241 + + + + + +N Sbjct: 424 AKEMVRRLLYPMVEAEEEVAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++D+++L+ + + + N + EL V + +++T Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543 Query: 302 DRI 304 + Sbjct: 544 KSL 546 >gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579] gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4] gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579] gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4] Length = 546 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187] gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26] gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187] gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26] Length = 546 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423 Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241 + + + + + +N Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++D+++L+ + + + N + EL V + +++T Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543 Query: 302 DRI 304 + Sbjct: 544 KSL 546 >gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293] gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293] Length = 546 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423 Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241 + + + + + +N Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++D+++L+ + + + N + EL V + +++T Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543 Query: 302 DRI 304 + Sbjct: 544 KSL 546 >gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42] gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42] Length = 546 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 364 EMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423 Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241 + L + + + + +N Sbjct: 424 AKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMN 483 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++D+++L+ + + + N + EL V + +++T Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543 Query: 302 DRI 304 + Sbjct: 544 KSL 546 >gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4] gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621] gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis KBAB4] gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621] Length = 548 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 30/329 (9%), Positives = 103/329 (31%), Gaps = 28/329 (8%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + I + T ++ K + + + + + + ++ V IS Sbjct: 220 EEIDEPTEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTP 279 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + ++ H + + + + + ++ +T+++ ++ + E P+ Sbjct: 280 NVEAINVRHYEGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKE 339 Query: 124 NRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFV 181 L K + + + + +++ + +P F + + ++ ++ + + Sbjct: 340 LSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGESMAVDEL 399 Query: 182 TTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------------- 218 I N+ I ++ S I+P + L Sbjct: 400 VQITFNLEIGDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQ 459 Query: 219 --KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + + + +N+ T++D+++L+ + + Sbjct: 460 PIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEPI 519 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304 + N + EL V + +++T + Sbjct: 520 QIYVNDVLVAYGELVNVDGFFGVKVTKSL 548 Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 79/234 (33%), Gaps = 3/234 (1%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 I + + + ++ V I+ + + V + Sbjct: 28 DILGEIANISFGSASTVLSTILNRQVSITAPQVELVDLYDTSDVEIPHVVLNIHFTKGLD 87 Query: 93 SNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + ++ +++ + ++ + E + + ++ + + + +++ Sbjct: 88 MENLLVLQQDVALSIADLMMMGTGEVEEGKELGELELSAVQEAMNQMMGFAATSMSEFFQ 147 Query: 152 TTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 T + SP ++ + ++K + N V ++ + I+N V S V ++ E + Sbjct: 148 DTVDMSPPTIKVVQLTEEMEKISGINGNNMVVKVSFELKIDNLVNSQLVQVVSVEHAKRM 207 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 L E + ++ + + + +V + +K L ++ + IG Sbjct: 208 INKLLQLSGGVEEEIDEPTEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGS 261 >gi|254465099|ref|ZP_05078510.1| Surface presentation of antigens protein [Rhodobacterales bacterium Y4I] gi|206686007|gb|EDZ46489.1| Surface presentation of antigens protein [Rhodobacterales bacterium Y4I] Length = 430 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 31/292 (10%), Positives = 84/292 (28%), Gaps = 17/292 (5%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +LAR + SS ++ L + + +L + + + + Sbjct: 22 SVLARKLAATKEGSGAIS-SSLTLKALRRSLARAAADLCELPLAVLAARQCNRVSEDLAR 80 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + + + + V L++ + R + + + Sbjct: 81 NLSDKDLLVVLDCPNGR-VGAASMDAATVTALIQQQTIGAVIGKA-PNERLYTPTDAAMT 138 Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSNE--FVTTINMNMTIE 191 + + A + + + ++ ++ + + V +N+++ Sbjct: 139 AEFLERSFAKVVSMLEGQADQAIFAGYRFGAQVENVRSLVLGMEADDYRVIELNLDLACG 198 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + LI+P+ T + R + + + + Sbjct: 199 AMQGVMKLILPEPTAEELQESQGGGAQGPS---------LGRNLDSIRAELTAVLCKMRV 249 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITD 302 L+D +LKIG +P L GK + LG++ + +R+ Sbjct: 250 PLRDFTSLKIGDTLPLDQAFLYETDLLTIGGKPVAQGRLGQMNGSRAVRLNR 301 >gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] Length = 467 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 101/318 (31%), Gaps = 28/318 (8%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P L +++ G + + + E D +V ++ S Sbjct: 44 SQEQRWRPFAFRNLEKVSRAQGLLAERLRWLTP-ADGTAVAVAARLTELFDAEVRLTVES 102 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q + + + + + + + L ++ LLG + ET + Sbjct: 103 VQVRPMAELRRFLGDPTFLAVLAPGALQGRAVLEVELALAHVAVDLLLGGAGET---VGL 159 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS----NEF 180 R L+ +E+ + + + +L + + + + Sbjct: 160 RPLTDIEEGVMAYVVLEGLKLL------VPGLQAAVPRPRLDGVARGVDEVSARLGDDGP 213 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 + +++ T+ + L++P L S+Q ++ + ++ FA + + Sbjct: 214 MLAVHLQATLGPHSGMVRLVVPAAVLDAAEPAVESTQRRARG--KADLEAFASRLSAVRS 271 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVI-------PFLHREKTCAILSANGKEIYSCE----L 289 + I + + +D+ +L++ V+ E A L E + Sbjct: 272 WLRAEIGSAEISGQDLASLRVKDVLLVDALSARTDKGEAGTARLRVGKGTAGWAEAEVFV 331 Query: 290 GRVGKNYTIRITDRINFD 307 G Y RITD + + Sbjct: 332 GE-DGRYQARITDFVQGE 348 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + I + T + VV L+ GQV+ LS NGK + EL + Sbjct: 395 DLLGDVPLQIAVELARVPVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELVEL 454 Query: 293 GKNYTIRI 300 +RI Sbjct: 455 EGQLGVRI 462 >gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820] gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201] gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820] gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201] gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 546 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147 + + ++ +T+++ ++ + E P+ L K + + + + ++ Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGIKEIMNQMMGHAATAMS 363 Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205 + + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 364 EMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423 Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241 + L + + + + +N Sbjct: 424 AKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMN 483 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + T++D+++L+ + + + N + EL V + +++T Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543 Query: 302 DRI 304 + Sbjct: 544 KSL 546 >gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29] gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3] gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3] gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29] Length = 547 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 27/320 (8%), Positives = 98/320 (30%), Gaps = 28/320 (8%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + ++ K + + + + + + ++ V IS + ++ H Sbjct: 228 VETEIVEEHVEKEHLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRH 287 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 + + + + + ++ +T+++ ++ + E P+ L Sbjct: 288 YDGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGI 347 Query: 133 K-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTI 190 K + + + + +++ + +P F + + ++ + + + I N+ I Sbjct: 348 KEIMNQMMGHAATAMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEI 407 Query: 191 ENV-ASSFVLIIPQETL-LKTTLISLSSQN-----------------------KSENQSE 225 ++ S I+P + + + + Sbjct: 408 GDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVPEEIEEEEIAAPVVQPIEFKEVKQ 467 Query: 226 DLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + +N+ T++D+++L+ + + + N + Sbjct: 468 IEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLV 527 Query: 285 YSCELGRVGKNYTIRITDRI 304 EL V + +++T + Sbjct: 528 AYGELVNVDGFFGVKVTKSL 547 >gi|84515428|ref|ZP_01002790.1| possible flagellar switch protein FliM [Loktanella vestfoldensis SKA53] gi|84510711|gb|EAQ07166.1| possible flagellar switch protein FliM [Loktanella vestfoldensis SKA53] Length = 310 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 96/286 (33%), Gaps = 17/286 (5%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 + G+ D + +++S L K + L + ++ T+ G+ ++ + Sbjct: 1 MAGQAVDTPPVSPLTTSRAVRLA--LVKAASDAGGLVLRVASTADDVGQLDDLLGGLETG 58 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 + + F+ L ++E P +R + +K L + Sbjct: 59 LMLVGLDRRG-ALAGFVAVDMQLRAAMVEVQTTGRLLDQP-ADDRPATGADKALCDPLLV 116 Query: 141 QISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIENVASS 196 + L + + + ++ + + L + V +N+ + + Sbjct: 117 AFLSALPPAVMGTAYEGWVDDVTVGGRLADSRLAGLLLEDGDYRVLRMNVELGTGDRQGE 176 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +L++P + + + + D F+ + R++ K L Sbjct: 177 VMLVLP--------VQAAPMVPEEQAPVMDWETAFSAAVQDAPAMLTARLHQFKMPLGRA 228 Query: 257 VTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRIT 301 L++GQV+P L A +G+ + +LG+ + +RI Sbjct: 229 QALQVGQVVPLPGCTVNSVRLIAPDGRCVAQAKLGQSAGHRAVRIE 274 >gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM 12809] gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM 12809] Length = 299 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 87/293 (29%), Gaps = 23/293 (7%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + K+ D D+ +S++ SG + ++ + S Sbjct: 11 STFTDVAKEVFQSTLNSMFDKDIKVSFSEVSSGGPDDLAGGYEGQVLIIVTEEKS----- 65 Query: 96 FIGCSNNLVITLLE-NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 G L+ + L + + SL +K K +Q A + + Sbjct: 66 --GLEAGLMFKTADITFLTNLMMMMDEPGKESLEDDDKDAIKELASQALAAVTVPLEEKT 123 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS----FVLIIPQETLLKTT 210 + + + + + ++ + +N L+ Sbjct: 124 QVKVSFRIDDVMVNDAPALFQSDAYMIIDADLGIGDQNTTFRFYTDINLMNLFGGGDDEE 183 Query: 211 LISLSSQNKSENQSEDLIDPFA-----------RKTYQLNVNIDTRINLKKTTLKDVVTL 259 S+ E+ E F ++V + ++ K LKD++T+ Sbjct: 184 PDFGSAFTFPEDDDEPATGGFGGGYGGGSPSNLDLLLDIDVPVSVKMGSTKMFLKDILTM 243 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G +I L N K I E+ V + RI + ++ ++ K Sbjct: 244 GSGNIIELDESADEPVELVINNKVIARGEVVIVDGYFGFRIKEIVSRAERIKK 296 >gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia 94] Length = 546 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISIPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + LS +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238 + L + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1] Length = 545 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 27/305 (8%), Positives = 96/305 (31%), Gaps = 32/305 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + LS +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETLLKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLN 239 + L + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEIVTEEIEEEKVVEPVAQPIEFKEVKQMEPVYMDTSILQNVE 480 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ T++D+++L+ + + + N + EL V + ++ Sbjct: 481 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 540 Query: 300 ITDRI 304 +T + Sbjct: 541 VTKSL 545 >gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28] gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28] Length = 547 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 27/320 (8%), Positives = 98/320 (30%), Gaps = 28/320 (8%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + ++ K + + + + + + ++ V IS + ++ H Sbjct: 228 VETEIVEEHVEKEHLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRH 287 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 + + + + + ++ +T+++ ++ + E P+ L Sbjct: 288 YDGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGI 347 Query: 133 K-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTI 190 K + + + + +++ + +P F + + ++ + + + I N+ I Sbjct: 348 KEIMNQMMGHAATAMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEI 407 Query: 191 ENV-ASSFVLIIPQETL-LKTTLISLSSQN-----------------------KSENQSE 225 ++ S I+P + + + + Sbjct: 408 GDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVPEEIEEEEIAAPVVQPIEFKEVKQ 467 Query: 226 DLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + +N+ T++D+++L+ + + + N + Sbjct: 468 IEPVYIDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLV 527 Query: 285 YSCELGRVGKNYTIRITDRI 304 EL V + +++T + Sbjct: 528 AYGELVNVDGFFGVKVTKSL 547 >gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L] gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation [Bacillus anthracis str. A2012] gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis Tsiankovskii-I] gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W] gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str. CDC 684] gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str. A0248] gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066] gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055] gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western North America USA6153] gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B] gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum] gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str. Sterne] gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L] gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis Tsiankovskii-I] gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W] gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str. CDC 684] gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str. A0248] Length = 546 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + LS +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238 + L + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603] gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603] Length = 548 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 30/335 (8%), Positives = 103/335 (30%), Gaps = 31/335 (9%) Query: 1 MRGQSIHKNTSPLH---PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57 + G + P ++ K + + + + + + ++ Sbjct: 214 LSGGVEEEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQP 273 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V IS + ++ H + + + + + ++ +T+++ ++ + E Sbjct: 274 VTISTPNVEAINVRHYEGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGE 333 Query: 118 TIPQLYNRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNR 175 P+ L K + + + + +++ + +P F + + ++ Sbjct: 334 IDPEKELSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGES 393 Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------- 218 ++ + + I N+ I ++ S I+P + L Sbjct: 394 MAVDELVQITFNLEIGDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVEEVVEEEEI 453 Query: 219 --------KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + + + +N+ T++D+++L+ + + Sbjct: 454 PAPVVQPIEYKEVKQVEPVYMDASILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDE 513 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + N + EL V + +++T + Sbjct: 514 DIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKSL 548 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 79/234 (33%), Gaps = 3/234 (1%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 I + + + ++ V I+ + + V + Sbjct: 28 DILGEIANISFGSASTVLSTILNRQVSITAPQVELVDLYDTSDVEIPHVVLNIHFTKGLD 87 Query: 93 SNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + ++ +++ + ++ + E + + ++ + + + +++ Sbjct: 88 MENLLVLKQDVALSIADLMMMGTGEVEEGKELGELELSAVQEAMNQMMGFAATSMSEFFQ 147 Query: 152 TTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 T + SP ++ + ++K + N V ++ + I+N V S V ++ E + Sbjct: 148 DTVDMSPPTIKVVQLTEEMEKISGINGNNMVVKVSFELKIDNLVNSQLVQVVSVEHAKRM 207 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 L E + ++ + + + +V + +K L ++ + IG Sbjct: 208 INKLLQLSGGVEEEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGS 261 >gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 547 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 28/308 (9%), Positives = 93/308 (30%), Gaps = 36/308 (11%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + LS +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYD--IDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLII 201 +++ + +P F + + +E V I N+ I ++ S I+ Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMKVDELV-QITFNLEIGDLLQSKMYQIL 419 Query: 202 PQETL-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-Y 236 P + + + + Sbjct: 420 PISEAKEMVRRLLYPMMEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQ 479 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + +N+ T++D+++L+ + + + N + EL V + Sbjct: 480 NVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFF 539 Query: 297 TIRITDRI 304 +++T + Sbjct: 540 GVKVTKSL 547 >gi|149203625|ref|ZP_01880594.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035] gi|149142742|gb|EDM30784.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035] Length = 334 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 33/292 (11%), Positives = 93/292 (31%), Gaps = 14/292 (4%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 H ++ R+ D +++ L + L + ++ +H+ Sbjct: 10 HSSVIQRMAQAARDGSDSRQMTPVKALRLS--LARAADTLFGLGLTVATVEQMRVPLAHV 67 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 S + + + + + + L+E S R+ + + Sbjct: 68 GRSLGDAGLLVLLEGDG-GARGALCLDSQFLAGLIEVQTTGSVR-PGLARPRAATRTDAA 125 Query: 134 LAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTN--RLSNEFVTTINMNMT 189 + I + ++ ++ P ++ L+ + + + + +++ Sbjct: 126 MVAPLIDAVLTEFESQLAQEHDAPPPRRFGFGDMVEDLRGLSLLLVAPDFELLRLTVDLG 185 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 L++P + +S K N + + V +D + Sbjct: 186 PGAKTGRLDLLLPV-----IASPARASSGKIANTKIEAPANLEQVVNNAPVMLDAVMARL 240 Query: 250 KTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L+D++ LK G ++PF ++ G + + ELG++ +R+ Sbjct: 241 RLPLRDILALKPGDLLPFQRETLNDTQLVGTRGHIVATAELGQMNGLRALRL 292 >gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342] gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342] Length = 547 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 28/308 (9%), Positives = 93/308 (30%), Gaps = 36/308 (11%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + LS +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYD--IDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLII 201 +++ + +P F + + +E V I N+ I ++ S I+ Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMKVDELV-QITFNLEIGDLLQSKMYQIL 419 Query: 202 PQETL-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-Y 236 P + + + + Sbjct: 420 PISEAKEMVRRLLYPMMEEEEEIITEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQ 479 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + +N+ T++D+++L+ + + + N + EL V + Sbjct: 480 NVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFF 539 Query: 297 TIRITDRI 304 +++T + Sbjct: 540 GVKVTKSL 547 >gi|161520304|ref|YP_001583731.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia multivorans ATCC 17616] gi|160344354|gb|ABX17439.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia multivorans ATCC 17616] Length = 443 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 77/294 (26%), Gaps = 23/294 (7%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 L P+ G D I ++L L + V++ + H Sbjct: 158 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 216 Query: 73 IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 L W + + + + AS + + + Sbjct: 217 -----GSPSALR-FELRRADGAWRCHGAVLFDAPDALAV----FFASAPAARPDAHAAYA 266 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 + L + + +E ++ + R+ I Sbjct: 267 NLPVPLVFEIGRTELT-MAELADVVGGDIIAIERWHAHEQNLLCVGRVPAAPAWEITGRP 325 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + + + +P L T + + + + S L V++ + Sbjct: 326 SGSRLTVERIREMP---LEPTRTDTPPATGAAHDASPADAPR---ALDGLAVDLRFELPP 379 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 L ++ L+ G VI L ANG I + L VG+ +R+ Sbjct: 380 TSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 433 >gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 546 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + LS +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238 + L + + + + Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273] gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272] gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272] gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273] Length = 548 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 28/329 (8%), Positives = 101/329 (30%), Gaps = 28/329 (8%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + I + + ++ K + + + + + + ++ V IS Sbjct: 220 EGIEEQAEIMEAEVVEEQIEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQPVSISTP 279 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + ++ H + + + + + ++ +T+++ ++ + E P+ Sbjct: 280 NVEAINVRHYNGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKE 339 Query: 124 NRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFV 181 L K + + + + +++ + +P F + + ++ + + + Sbjct: 340 LSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGEAMEVDEL 399 Query: 182 TTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------------- 218 I N+ I ++ S I+ + L Sbjct: 400 VQITFNIEIGDLLQSKMYQILSIAEAKEMVRRLLYPMVEEQEEIVEEVIEEEKIPAPAIQ 459 Query: 219 --KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + + + +N+ T++D+++L+ + + Sbjct: 460 PIEYQEVKQVEPVYMDASILKNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEPI 519 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304 + N + EL V + +++T + Sbjct: 520 QIYVNDVLVAYGELVNVDGFFGVKVTKSL 548 >gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermosediminibacter oceani DSM 16646] gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermosediminibacter oceani DSM 16646] Length = 362 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 31/351 (8%), Positives = 90/351 (25%), Gaps = 46/351 (13%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + + L L+ + +G + + V I+ Sbjct: 8 SQEEINELLNKSLSNQDEGEFLSQEEIDALGEIGNISIGTSATTLYTLLRNKVTITTPDV 67 Query: 66 QSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + F+ + + + + ++G + Sbjct: 68 ALTTVEKLQEKYSIPFIAIIVDHTEGIEGSSILIMKEEDAKIIADLMMGGDGRNTEVELD 127 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 + + + + + L+ + SP + + +E + I Sbjct: 128 ELRLSAVGEAMNQMMGSSATSLSTMLKKNINISPPTLKRVNFADETLQSYFKKDEKIVKI 187 Query: 185 NMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQN----KSENQSEDLIDPFARK----- 234 + M + + + S +L++ K +S ++ + Sbjct: 188 SFKMEVGDLIESEIMLLMTIPFAKKLVRELMSISKGIPFETSKSDDTDEHILENAPPEPQ 247 Query: 235 -----------------------------------TYQLNVNIDTRINLKKTTLKDVVTL 259 + + I + +K+++ + Sbjct: 248 KPFNEKKAEKVSVKPVELEDFGEAETSGKKSSLDLIMDVPLEISVELGRTVKKIKEILEI 307 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +++ +RIT+ +N +K Sbjct: 308 GPGSIIELEKLAGEPVDILVNGKLIARGEVVVIDESFGVRITEILNSIEKV 358 >gi|15615008|ref|NP_243311.1| flagellar motor switch protein [Bacillus halodurans C-125] gi|10175065|dbj|BAB06164.1| flagellar motor switch protein [Bacillus halodurans C-125] Length = 401 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 28/349 (8%), Positives = 86/349 (24%), Gaps = 68/349 (19%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASL 88 + +G + ++ VDI+ + F + Sbjct: 49 VEKDALGEIGNISFGSAATALSTLLNEKVDITTPQVSVIHKDQLEKEFPQPHVAVHVDYT 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + +LG + N + ++ + + S ++ Sbjct: 109 EGFEGMNLLVIRTKDAAIIADLMLGGDGLNPEEELNDMHISAVQEAMNQMMGSASTSMST 168 Query: 149 CISTTQESSPN------------------------------------------LEDFYDI 166 + + SP + + Sbjct: 169 IFNKRIDISPPGVNMLDVGNDQGTDRVPEGDVLIKVSFRLRIGELIDSSIMQLVTVPFAK 228 Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE- 225 + N +E + M + + + P + + ++ S+ Sbjct: 229 KMVDDLMNPAQDEVAGAVAMEVDQQPRQETVNEAPPTNQTDPVHMQQPTQGGYRQSMSQP 288 Query: 226 ----DLIDPFA--------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 + + + + K ++KD+++ Sbjct: 289 PLQTRRQANVQPAAFTNFEHPELNDTEAGNLDMLLDIPLQVTVELGRTKRSIKDILSFTQ 348 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + N K I E+ + +N+ +R+T+ ++ ++ Sbjct: 349 GSIIELDKLAGEPVDILVNQKLIAKGEVVVIDENFGVRVTEILSQRERI 397 >gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1] gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus WK1] Length = 383 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 28/342 (8%), Positives = 93/342 (27%), Gaps = 61/342 (17%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ + + + + F + Sbjct: 40 QDALGEIGNISFGSSATALSMLLNQKVEITTPNVSLVERAKVAEEFPHPYVAIQVSYTEG 99 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + + ++G P + + ++ + + + ++ Sbjct: 100 FLGTNLLVIKQSDAAIIADLMMGGDGTNPPAFMDEIQLSAVQEAMNQMMGSAATSMSTIF 159 Query: 151 S------------------------------TTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 S + + D + ++ + E Sbjct: 160 SKKVDISPPSLHLLDLKEGEGFEYLPPDDVLVKVSFRLKVGNLIDSNIMQLLPIHFAKEL 219 Query: 181 VT-TINMNMTIENVASSFVLIIPQETL-----------------------------LKTT 210 V +N + T +++ P +T Sbjct: 220 VENLLNPSSTKTETSATINTNEPHQTAPSAQTKPAPSSAQQTQKEAPQHFGTGAVQQPVN 279 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + ++ + + + + + + K +++D+++L G +I Sbjct: 280 VQPVAFASFEPAPLPEAESRNLDMLLDIPLQVTVELGRTKRSVQDILSLSSGSIIELDKL 339 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + N K I E+ + +N+ +R+T I+ + K Sbjct: 340 AGEPVDILVNNKLIAKGEVVVIDENFGVRVTSIISQSDRLNK 381 >gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 375 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 38/344 (11%), Positives = 96/344 (27%), Gaps = 58/344 (16%) Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV- 82 + + I +G + + V I+ + + F ++ Sbjct: 29 GKELTEEEQDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNIPYIG 88 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQ 141 + + V+ + + ++G + ++ + LS + + + I Sbjct: 89 VEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEGKVEDGEITDLHLSAIGEA-MNQMIGS 147 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM--------------- 186 + L+ ++ T SP D V I Sbjct: 148 AATSLSTLLNKTINISPPKAFVVDFTASLPTDISFPEGDVVKIAFKMEVGEIIDSEIMQL 207 Query: 187 ----------------------NMTIENVASSFVLIIPQETLLKTTLISLSSQ------- 217 +T + +S+ ++ ++ + IS + Sbjct: 208 LPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQK 267 Query: 218 -----------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 ++ + + + I + K +KD++ L G +I Sbjct: 268 VNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIE 327 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + ANGK I E+ + +N+ +RI D ++ ++ Sbjct: 328 LDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371 >gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus NVH0597-99] gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI] gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus NVH0597-99] gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] Length = 546 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + LS +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238 + L + + + + Sbjct: 421 ITEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540 Query: 299 RITDRI 304 ++T + Sbjct: 541 KVTKSL 546 >gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 375 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 40/354 (11%), Positives = 98/354 (27%), Gaps = 58/354 (16%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 ++T + + I +G + + V I+ + + Sbjct: 19 EESTENQVTNLKELTEEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEEL 78 Query: 74 IHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131 F +V + + V+ + ++G + ++ + LS + Sbjct: 79 KKEFNIPYVGVEVEYTEGLKGHNLLILKKEDVLKMTNLMMGGEGKVEDGEITDLHLSAIG 138 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM----- 186 + + I + L+ ++ T SP D V I Sbjct: 139 EA-MNQMIGSAATSLSTLLNKTINISPPKAFIVDFTASLPTDISFPEGDVVKIAFKMEVG 197 Query: 187 --------------------------------NMTIENVASSFVLIIPQETLLKTTLISL 214 +T + +S+ ++ ++ + IS Sbjct: 198 EIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVIIENDEKIVETANNISP 257 Query: 215 SSQ------------------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + ++ + + + I + K +KD+ Sbjct: 258 GGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDI 317 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + L G +I + ANGK I E+ + +N+ +RI D ++ ++ Sbjct: 318 LELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371 >gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108] gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108] Length = 547 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 27/307 (8%), Positives = 96/307 (31%), Gaps = 34/307 (11%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + LS +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETLLKTTLISLSSQN------------------------KSENQSEDLIDPFARKT-YQ 237 + L + + + Sbjct: 421 ITEAKEMVRRLLYPMVEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQN 480 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + +N+ T++D+++L+ + + + N + EL V + Sbjct: 481 VEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFG 540 Query: 298 IRITDRI 304 +++T + Sbjct: 541 VKVTKSL 547 >gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC 49176] gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC 49176] Length = 370 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 42/361 (11%), Positives = 98/361 (27%), Gaps = 60/361 (16%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + L G + + + ++ V+I Sbjct: 14 LGGMGEDSGSDSSDTQTLG---GADPLSGEEKDAIGEISNISMGTAATTLSTLLNQRVNI 70 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + I S+ VF Q S + N + V + + ++G S + Sbjct: 71 TTPNVSIANWDDISQSYDRPCVFIQISYIEGLDGNNILILREKDVKIITDLMMGGSGTDV 130 Query: 120 PQLYNRSLSTVEK-KLAKRTIAQISAVLNQCISTTQESSP---NLEDFYDIDYLKKNTNR 175 L + + + + ++ + + SP +L D + + Sbjct: 131 DATELTELHLSAICEAMNQMMGSAATSISSVLEKKVDISPPTASLIDLEGTIDEEGLGDF 190 Query: 176 LSNEFVTTINMNMTIEN-VASSFVLIIPQETLL--------------------------- 207 L +FV + + I + + S + + P + Sbjct: 191 LKGQFV-KVAFRLEIGSLIDSELMQLYPIDFAKELYSKFMSSTETEQPAPAAQQPAAPTP 249 Query: 208 -----------------------KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + Q N + + + + + Sbjct: 250 QPVAQQPTAPAPQPMPTPAMPSQPVNVAPAQFQAFDTNINPLMQQENIGLIMDVPLEVTV 309 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + T+K+++ G +I L NGK + E+ + N+ IRIT+ + Sbjct: 310 ELGRTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIEDNFGIRITEIV 369 Query: 305 N 305 Sbjct: 370 K 370 >gi|152975143|ref|YP_001374660.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023895|gb|ABS21665.1| CheC, inhibitor of MCP methylation [Bacillus cytotoxicus NVH 391-98] Length = 554 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 31/325 (9%), Positives = 98/325 (30%), Gaps = 40/325 (12%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 L+ + + + + + + + ++ V IS + ++ Sbjct: 234 ELVEEPPFQEKLTQEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVETIDVR-YYD 292 Query: 76 SFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK- 133 FV S + ++ +T+++ ++ + E + L+ +E Sbjct: 293 GVPVPFVILNVDFVEGLKSENVFVFTKDVALTMVDLMMMGTGEI---DSEQELTEMELSG 349 Query: 134 ---LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMT 189 + + + + +++ + +P F + + ++ ++ + I N+ Sbjct: 350 VKEIMNQMMGHAATAMSEMFMEKMDITPPTVKFVTLKEEMEYLGKEADSDELVQITFNLE 409 Query: 190 IEN-VASSFVLIIPQETLLKTTLISL-------SSQNKSENQSEDLIDPF---------- 231 I + V S I+P + L + + E+ ++ Sbjct: 410 IGDLVQSKMYQILPLSEAKEMVKRLLHVDVEESIELEEEASIKEENVEEIPEPAVEPIEL 469 Query: 232 ------------ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + +N+ T++D+++L + + Sbjct: 470 LEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILSLHENDAVVLDEEVDEPIRIYV 529 Query: 280 NGKEIYSCELGRVGKNYTIRITDRI 304 N + EL V + +++T + Sbjct: 530 NNVLVAYGELVNVDGFFGVKVTKSL 554 >gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102] gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1] gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam] gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102] gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1] Length = 547 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 27/307 (8%), Positives = 96/307 (31%), Gaps = 34/307 (11%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + LS +E + + + + Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420 Query: 203 QETLLKTTLISLSSQN------------------------KSENQSEDLIDPFARKT-YQ 237 + L + + + Sbjct: 421 ITEAKEMVRRLLYPMVEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQN 480 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + +N+ T++D+++L+ + + + N + EL V + Sbjct: 481 VEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFG 540 Query: 298 IRITDRI 304 +++T + Sbjct: 541 VKVTKSL 547 >gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 318 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + + + + + ++ V IS + ++ H + + + Sbjct: 16 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 75 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144 + + ++ +T+++ ++ + E + L+ +E + + + + Sbjct: 76 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 132 Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202 +++ + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 133 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 192 Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238 + + + + + Sbjct: 193 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 252 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ T++D+++L+ + + + N + EL V + + Sbjct: 253 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 312 Query: 299 RITDRI 304 ++T + Sbjct: 313 KVTKSL 318 >gi|85710186|ref|ZP_01041251.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1] gi|85688896|gb|EAQ28900.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1] Length = 343 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 29/292 (9%), Positives = 72/292 (24%), Gaps = 28/292 (9%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 R + I L + L + +++S + + Sbjct: 27 RGPRPEERAQAISTWCRDLAQELAQELAPLLS---GGRLNVSIAEPEQVGAQDVFDLIGP 83 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 V I L + G + + L L ++ Sbjct: 84 IAVNCLLRCGEGDQTVLFSLDYATAIGLTDCSFGGEGTLPDEAPS-QLPHSAAMLVEQFA 142 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN------- 192 A ++ + ++ + + + + ++ V + + Sbjct: 143 ATVAQAI--VMTNGSAERARGDVLVRSESVTRLKPFGADAEVALFKLTINRGESANWCAL 200 Query: 193 ---VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + ++P ++ SL E + + ++ + Sbjct: 201 FAVASDRVDGLLPGLEAVRIRSRSLEGSGDFE----------RSGFAAMPLTLEAVVGEI 250 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 TL + L+ G IP L ++GR+ N +R+T Sbjct: 251 DLTLGRLEQLRPGDKIPLTISRDLP--LRIGETVFARGKVGRLDSNLALRVT 300 >gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus JW 200] gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus JW 200] Length = 375 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 39/354 (11%), Positives = 98/354 (27%), Gaps = 58/354 (16%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 ++ + + I +G + + V I+ + + Sbjct: 19 EESTENQVANLKELTEEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEEL 78 Query: 74 IHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131 F +V + + V+ + + ++G + ++ + LS + Sbjct: 79 KKEFNIPYVGVEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEGKVEDGEITDLHLSAIG 138 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM----- 186 + + I + L+ ++ T SP D V I Sbjct: 139 EA-MNQMIGSAATSLSTLLNKTINISPPKAFVVDFTASLPTDISFPEGDVVKIAFKMEVG 197 Query: 187 --------------------------------NMTIENVASSFVLIIPQETLLKTTLISL 214 +T + +S+ ++ ++ + IS Sbjct: 198 EIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVIIENDEKIVETANNISP 257 Query: 215 SSQ------------------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + ++ + + + I + K +KD+ Sbjct: 258 GGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDI 317 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + L G +I + ANGK I E+ + +N+ +RI D ++ ++ Sbjct: 318 LELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371 >gi|86137304|ref|ZP_01055881.1| hypothetical protein MED193_05579 [Roseobacter sp. MED193] gi|85825639|gb|EAQ45837.1| hypothetical protein MED193_05579 [Roseobacter sp. MED193] Length = 450 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 89/289 (30%), Gaps = 19/289 (6%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 LAR + +K S ++ L + E+ DL + + + ++ Sbjct: 17 LARKLAASKESGAAQK-GSFTLKALRRSLARAASEQCDLPLAVLAARQVNRVPEDLVDDL 75 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + LV L++ R+ + + + Sbjct: 76 SDKDLLVVLDGPNGR-LGAATMDAALVTALIQKQTIGQIMGKA-PAERNYTPTDAAMTAE 133 Query: 138 TIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI--ENV 193 + + A ++ + ++ I+ ++ L E I++ + + + Sbjct: 134 FLEKSFAKVHALLQGEKDQLIFSGYRYGAQIEDVRSLILGLEGEDYRLISLTVDLAVGAM 193 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 LI+P+ TL + L + A + + + + L Sbjct: 194 QGELKLILPEPTLEELGLSGAKA-----------GSSLAGGMGAMRAELSAILCKVRVPL 242 Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRIT 301 + K+G+V+P + G+ I LG++ +R+T Sbjct: 243 NEFSAWKVGEVLPLDQAFLYETDLIDIGGRSISKGRLGQLNGARAVRLT 291 >gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196] gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196] Length = 548 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 29/329 (8%), Positives = 102/329 (31%), Gaps = 28/329 (8%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 + I + ++ K + + + + + + ++ V IS Sbjct: 220 EEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTP 279 Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + ++ H + + + + + ++ +T+++ ++ + E P+ Sbjct: 280 NVEAINVRHYEGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKE 339 Query: 124 NRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFV 181 L K + + + + +++ + +P F + + ++ ++ + + Sbjct: 340 LSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGESMAVDEL 399 Query: 182 TTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------------- 218 I N+ I ++ S I+P + L Sbjct: 400 VQITFNLEIGDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQ 459 Query: 219 --KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + + + +N+ T++D+++L+ + + Sbjct: 460 PIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEPI 519 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304 + N + EL V + +++T + Sbjct: 520 QIYVNDVLVAYGELVNVDGFFGVKMTKSL 548 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 78/234 (33%), Gaps = 3/234 (1%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 I + + + ++ V I+ + + V + Sbjct: 28 DILGEIANISFGSASTVLSTILNRQVSITAPQVELVDLYDTSDVEIPHVVLNIHFTKGLD 87 Query: 93 SNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + ++ +++ + ++ + E + + ++ + + + +++ Sbjct: 88 MENLLVLQQDVALSIADLMMMGTGEVEEGKELGELELSAVQEAMNQMMGFAATSMSEFFQ 147 Query: 152 TTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 T + SP ++ + ++K + N V ++ + I+N V S V ++ E + Sbjct: 148 DTVDMSPPTIKVVQLTEEMEKISGINGNNMVVKVSFELKIDNLVNSQLVQVVSVEHAKRM 207 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 L + ++ + + + +V + +K L ++ + IG Sbjct: 208 INKLLQLSGGVAEEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGS 261 >gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis BI429] gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis BI429] Length = 370 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 40/335 (11%), Positives = 96/335 (28%), Gaps = 56/335 (16%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSS 90 + + +G + + VDI+ + + K I +N V S Sbjct: 32 KDMFGEIGNIIMGSGTTALSTLLGRKVDITVPAVEIKKLKEIREEVKGKNAVVSINFKGE 91 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + V + ++G + + + + + + L+ + Sbjct: 92 IEGLNALVLPQMAVARIANIMMGGDGNVETDEVDEISLSAVSEAMNQMMGAAATSLSDML 151 Query: 151 STTQESSPNLEDF--YDIDYLKKNTNRL-SNEFVTTINMNM---TIENVASSFVLIIPQE 204 T + +P + +D + +K ++ V +N + +E + P Sbjct: 152 KKTVDITPPTVELLDFDEEDVKFPPVVSNDDDIVAKVNFKLEIEGLEPADFFLTMSPPFV 211 Query: 205 TLL----------------------------------------------KTTLISLSSQN 218 L ++ + Q+ Sbjct: 212 KKLYRLLFGEEKKQASPQQQAQPSTPQQAPTTENENIQNVKMSENIQKNPVSVSPVQFQS 271 Query: 219 KSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + +N+ + K TLK V+ L +G +I Sbjct: 272 FESGGIVKSTSEIPERIKALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPV 331 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK I E+ + +N+ +RIT+ ++ ++ Sbjct: 332 DIIVNGKLIARGEVVVIDENFGVRITEIVSPQERF 366 >gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9] gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter italicus Ab9] Length = 375 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 42/348 (12%), Positives = 94/348 (27%), Gaps = 58/348 (16%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 + + + I +G + + V I+ + + F Sbjct: 25 QFRSGSELTEEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNI 84 Query: 80 NFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 ++ + V+ + + ++G E + + + Sbjct: 85 PYIGVEVEYTEGLKGRNLLILKKEDVLKMTDLMMGGEGEVEEGDITDLHLSAISEAMNQM 144 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSF 197 I + L+ ++ T SP D V I M + + S Sbjct: 145 IGSAATSLSTLLNMTINISPPKAFIVDFTVFLPTDISFPEGDVVKIAFKMEVGEIIDSEI 204 Query: 198 VLIIP--------QETLLKTTLISLSSQNKSENQS------------------------- 224 + ++P L K S + ++ EN S Sbjct: 205 MQLLPFDFAKELVHSVLSKNEEKSPQATSQEENASAIIESDEKSVETDNNILKEEKTTKK 264 Query: 225 ----------------------EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + + + I + K +KD++ L G Sbjct: 265 KQKVNASPVVFQSFDEEPSIEGKEEKENL-ELILDVPLTITVELGRTKKLIKDILELSEG 323 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +I + ANGK I E+ + +N+ +RI D ++ ++ Sbjct: 324 SIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371 >gi|189353517|ref|YP_001949144.1| type III secretion system apparatus protein [Burkholderia multivorans ATCC 17616] gi|189337539|dbj|BAG46608.1| type III secretion system apparatus protein [Burkholderia multivorans ATCC 17616] Length = 385 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 77/294 (26%), Gaps = 23/294 (7%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 L P+ G D I ++L L + V++ + H Sbjct: 100 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 158 Query: 73 IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 L W + + + + AS + + + Sbjct: 159 -----GSPSALR-FELRRADGAWRCHGAVLFDAPDALAV----FFASAPAARPDAHAAYA 208 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 + L + + +E ++ + R+ I Sbjct: 209 NLPVPLVFEIGRTELT-MAELADVVGGDIIAIERWHAHEQNLLCVGRVPAAPAWEITGRP 267 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + + + +P L T + + + + S L V++ + Sbjct: 268 SGSRLTVERIREMP---LEPTRTDTPPATGAAHDASPADAPR---ALDGLAVDLRFELPP 321 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 L ++ L+ G VI L ANG I + L VG+ +R+ Sbjct: 322 TSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 375 >gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 370 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 42/337 (12%), Positives = 93/337 (27%), Gaps = 57/337 (16%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV-FSQASL 88 + + +G + + V I+ + ++ F +V Sbjct: 32 EEQDVLGEIGNISFGTSATTLFTLLRNKVTITTPKVSIINWENLKKEFNIPYVGVEVEYT 91 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 N + V+ + + ++G T ++ LS + + + I S L+ Sbjct: 92 EGIKGNNLLILKEQDVLRITDLMMGGDGNVTEGEITELHLSAIGEA-MNQMIGSASTSLS 150 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETL 206 I + SP D + + +V I M + + S + +IP Sbjct: 151 TLIGESINISPPRAFVVDFNKGLPENISFPDGYVVKIAFKMVVGEIIDSEIMQLIPIAFA 210 Query: 207 LK-------------TTLISLSSQNKS--------------------------------- 220 + Q+ Sbjct: 211 KRLVEQVMSKNVENSPKESFQGVQDDDIIKTGTKGINNEFSDEVKSTVKHKAEKVDVKPV 270 Query: 221 -------ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 E++ + +N+ + K +KD++ L G +I Sbjct: 271 IFREFDDEDEPTTAEKENINLIMDIPLNVTVELGRTKKLIKDILELNEGSIIELDKLAGE 330 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK I E+ + +N+ +RI D + ++ Sbjct: 331 PVDILVNGKFIAKGEVVVIDENFGVRILDIVKQSKRI 367 >gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 422 Score = 99.3 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 36/360 (10%), Positives = 91/360 (25%), Gaps = 78/360 (21%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88 T + +G + ++ V I+ + ++ + F + V + L Sbjct: 62 TEKDTVGEIGNISMGTAATTLSVLLNQKVSITTPRVEVTDYATLREEFPKPHVAVEVEYL 121 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHE--TIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + ++G ++ LS V + + + S + Sbjct: 122 EGLEGINVLILKQEDAKMIANLMMGGDGTDIAEGEIEEFHLSAVGEA-MNQMMGSASTSM 180 Query: 147 NQCIST-----------------------------TQESSPNLEDFYDIDYLKKNTNRLS 177 + + D D + ++ + Sbjct: 181 SDMFDKTINISPPSVKMLDLGSEEALEELPKEPMIKVAFDLKIGDLIDSEIMQLIPFEFA 240 Query: 178 NEFVTTINMNMTIENVASSFVLII-------------------PQETLLKTTL------- 211 + V ++ + E A + P+ Sbjct: 241 KDMVVSLTGDSAEEVSAGQQEMAASSEGTAAAKPQAPTQTGPGPESGQSPEREVSTQGQP 300 Query: 212 ------ISLSSQNKSENQSEDLIDPFA-------------RKTYQLNVNIDTRINLKKTT 252 Q ++ P + + + + K Sbjct: 301 TGQGEQQMKQEQQPKKDYQPVEFSPLEGHQSAAKGENSNIELIMDVPLEVTVELGQTKKK 360 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 +++++ L G +I + NGK I E+ + +N+ IRIT+ I+ ++ K Sbjct: 361 IQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVVVIDENFGIRITEIISPVERINK 420 >gi|254454295|ref|ZP_05067732.1| Surface presentation of antigens protein [Octadecabacter antarcticus 238] gi|198268701|gb|EDY92971.1| Surface presentation of antigens protein [Octadecabacter antarcticus 238] Length = 330 Score = 98.9 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 88/303 (29%), Gaps = 15/303 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 ++PIL +L ++ ++ L + + L V + S + Sbjct: 3 AINPILAQKLGLTQAPPVAQGAQPATPMRQMRRALGRAADKAAGLSVSVLGISEEDMDAE 62 Query: 72 HIIHSFKENFVFSQASLSSWSS-NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +I E +V S + L L+E S P R ++ V Sbjct: 63 SLIEGGPEGWVVLGLRDGSLAGLTGLFLLDQPLRSALVEMQTMGSL-LPPSDDQRRVTRV 121 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNM 188 + + +Q+ A L + + P D ID L+ N + I + M Sbjct: 122 DAVMTLPFASQVLAELAEVGFGAADLEPAAYDIGPIDDLRTAGLVMVQGNYRICRITIQM 181 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 ++ + ++ S + +D + Sbjct: 182 GGGETQGEMLIAM--------RPKVSVVTAPVKDTSG-WSVALRDAVQEAPAELDAILTR 232 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITD-RINF 306 + + ++GQV+ L+ G I + LG+V +R+ R+ Sbjct: 233 MTMPIHKLEGFEVGQVLNLAGTTVGSVTLTGPGGIIITTARLGQVAGKRAVRVQHSRVEL 292 Query: 307 DQK 309 Sbjct: 293 QDD 295 >gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae 12198] gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae 12198] Length = 279 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 93/247 (37%), Gaps = 16/247 (6%) Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 S + + ++ + +L L + ++G E+ + + L +++ + Sbjct: 41 PPYVFISIEAKGDFGADLGMLMPIDLATALADTMVGGEGESKESVDDDDLDAIKE-INSN 99 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 +S LN + S + ++ I + ++F + ++ + S F Sbjct: 100 IFGALSTSLNSQ-KKLPKLSFSCKNVASITNEQDL-----SDFARVYDFAFSLNRIKSHF 153 Query: 198 VLIIPQETLLKTTLISLSSQN-KSENQSEDLIDPFARK-------TYQLNVNIDTRINLK 249 +L+ +E + + + ++E +++ + +N+ RI K Sbjct: 154 LLLCTKEFEENFSGKKEEASSPQTEEIDSAPGQNLSQEEMKNIGMLLDVKLNVKVRIGQK 213 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + LKDV ++ IG VI + + K I E+ V N+ I++T+ I ++ Sbjct: 214 RMLLKDVTSMDIGSVIELNQLANEPLEILIDDKVIAKGEVVIVDGNFGIQVTE-IGTKRQ 272 Query: 310 SLKNFLH 316 L+ Sbjct: 273 RLEQLRS 279 >gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter desulfuricans SSM1] gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter desulfuricans SSM1] Length = 292 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 L K+ + ++ DV+I T +G S + +F + F Sbjct: 15 EFVDLVKENFGSSLQTVINRDVEIEITEFFTGFISDVYENFDNPVCVKGVETE-SGNEFG 73 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 + + + L++ ++ E+ +L + K AK I QI + LN + + Sbjct: 74 LLFTIKDLTALVDYMMMGEGESKDELDDE-----TKDGAKELITQIVSSLNVPLKEKYDK 128 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSF---------VLIIPQETL 206 N +E ++ + + S F +I Sbjct: 129 KFNFTVVDI-----FTEMSEEDEKEYAAYKFSIKADKIDSEFIFFIDSAFNSIIETSSEK 183 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + + E S + + + +I K LKD++ L G++I Sbjct: 184 TDDVPDFVPFEEGFEQNSSYDSGGNIDLLLDVEIPVSVKIGSTKMYLKDILELGPGKIIE 243 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L N K I E+ V + +RI + ++ ++ K Sbjct: 244 LEEYADEPVELLVNNKVIARGEVVVVDGYFGLRIQEIVSKAERIKK 289 >gi|326386953|ref|ZP_08208566.1| flagellar switch protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208562|gb|EGD59366.1| flagellar switch protein [Novosphingobium nitrogenifigens DSM 19370] Length = 295 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/284 (13%), Positives = 87/284 (30%), Gaps = 12/284 (4%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKE 79 L +K + + + + L +++ + + + Sbjct: 20 LLRPGPEKADVLQALARAADRMARTLRGAMARLCGGYPPEVAIAAPREIGIEEFQS--EG 77 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 +S S+ V+ L++ G E + R L + + +R Sbjct: 78 LTAYSIYSVLPGLDRLASAIDGEAVLRLVDRTFGGPGEAP-RPMPRELPMSAELMVQRIE 136 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFV 198 +S L + + + P L + S + + + ++ + Sbjct: 137 TILSEELGRALGGSHAIRP----LRRDRDLAQLQPFASATRLALLEITISEGSREPWPIR 192 Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 L++P E L T + + ++ DP A + + + + + L+ V T Sbjct: 193 LVLPVEALSSLTGMGAQPATSTT-RAPAKGDPLAEPYGAMPLPVTALLVDTRVPLRTVST 251 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L +GQV+ L G+ + +G V I IT Sbjct: 252 LAVGQVLML--PIARSVPLVVGGQTVGHGAIGAVDDRVAIEITH 293 >gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267] gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267] Length = 277 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 90/241 (37%), Gaps = 8/241 (3%) Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 V + ++ + + L+ + E +LG N +LS E AK Sbjct: 42 PPLVVANVTVGGDVTAKMMLVATPVLMSAIGEWMLG----EEEISRNENLSEDELDAAKE 97 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 + I + + + + +++L ++ N + F ++ I +V+ Sbjct: 98 VFSNILGAFSTSLGAQKGMPKLNFEVAKVNFLDESANLDVSAFEKIYIYSVKIGDVSEHI 157 Query: 198 VLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLK 254 +++ + S+Q + +S+ + + + + + RI K+ LK Sbjct: 158 AVVLDFALVKFLNKDQKESAQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLK 217 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 DV+T+ IG VI + + K + E+ V N+ I+IT I ++ L+ Sbjct: 218 DVLTMDIGSVIELNQLANDPLEILISDKVVALGEVVIVDGNFGIQITQ-IGTKKERLEQL 276 Query: 315 L 315 Sbjct: 277 R 277 >gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11] gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11] Length = 372 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 39/339 (11%), Positives = 92/339 (27%), Gaps = 59/339 (17%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88 + + +G + + V I+ + + F +V + Sbjct: 32 EEQDVLGEIGNISFGTSATTLFTLLRNKVTITTPKVSIVNWESLKKEFNIPYVAVEVEYT 91 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 N + V+ + + ++G T ++ LS + + + I S L+ Sbjct: 92 EGIKGNNLLILKEQDVLRITDLMMGGDGNVTEGEITELHLSAIGEA-MNQMIGSASTSLS 150 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETL 206 I + SP D + + + M + ++ S + +IP Sbjct: 151 TLIGESINISPPKAFIVDFNKGLPGDISFPEGDIVKVAFKMVVGDIIDSEIMQLIPISFA 210 Query: 207 LKTTLISLSSQ-------------------NKSENQSEDLIDPFARK------------- 234 K +S + D + + Sbjct: 211 KKLVEQVMSKNVENSPKGSFQDVNDDDIINTGTAGIKNDFNEEIRHEEQISQPKSRKVDV 270 Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + + + + +KD++ L G +I Sbjct: 271 KPVVFKELDADEQTVSEKENINLIMDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLA 330 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK I E+ + +N+ +RI D + ++ Sbjct: 331 GEPVDILVNGKFIAKGEVVVIDENFGVRILDIVKQSKRI 369 >gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC BAA-430] gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC BAA-430] Length = 279 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 21/278 (7%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVIT 106 + + ++S+ Q GK S S SS F S + Sbjct: 14 TATIEGLLGQTPEVSHIEAQDGK----SDSINPPMAKIDISTDDGSSLAFF-ISPKVATA 68 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG E+ + L K + I ++ + +E +I Sbjct: 69 LADMMLGGEGESKETMEADDLDAT-----KEIASNIFGAISTSLGGQKELPKLSFSISNI 123 Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 +++ L N + I +V + + +S + + Sbjct: 124 NFIPDGDLGLGNYSGF-YTFSFNIGSVQDYLYFGFSSAFENHFNPNANQALEESSTGNGE 182 Query: 227 LIDPFA---------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + + RI KK LKDV+ + IG V+ + Sbjct: 183 AQAKVELNNAEMKNMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEV 242 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + K I E+ V N+ I+IT+ I + L + Sbjct: 243 LVDDKVIAKGEVVIVDGNFGIQITE-IAPKKDRLDQLM 279 >gi|57168741|ref|ZP_00367872.1| fliY protein (fliY) [Campylobacter coli RM2228] gi|305432517|ref|ZP_07401679.1| flagellar motor switch protein [Campylobacter coli JV20] gi|57019788|gb|EAL56471.1| fliY protein (fliY) [Campylobacter coli RM2228] gi|304444556|gb|EFM37207.1| flagellar motor switch protein [Campylobacter coli JV20] Length = 278 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 92/279 (32%), Gaps = 22/279 (7%) Query: 50 FKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104 F + ++ ++ S + ++ + K V++ ++ I L+ Sbjct: 9 FTNECTSTIEGLTGKSAEFSEYKEFDVSSQDTLKPPLVYAVFNIKE-GGKIGILAGAVLM 67 Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 + E ++G + K+ + I+ S L + + Sbjct: 68 SAIGEWMMGEEEISKNDQLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFEISSCE 126 Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224 + N +F ++ IE++ LI+ Q TL + + + S Sbjct: 127 FV-----AENVDFKDFTKLYFFDVKIEDLEEQISLIVDQ-TLHNILSGKAADDGHAHSSS 180 Query: 225 EDLIDPFA--------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 F + + + RI KK LKDV+T+ IG V+ Sbjct: 181 NSENKGFEISEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLE 240 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + K I E+ V N+ ++IT+ I ++ L+ Sbjct: 241 ILIGDKRIAYGEVVIVDGNFGVQITE-IGSKKERLEQLR 278 >gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC 49179] gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC 49179] Length = 292 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 86/301 (28%), Gaps = 32/301 (10%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + L+ + + I + I F E+ + Sbjct: 1 MIEDFLKLFVQECTSTLGGLLGKTPAIELKN--EISVGDFI--FIEHASVVVQVKPQTNV 56 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 + + L + ++G + L L + K + I L + Sbjct: 57 TITLAVPVPMATALADLMVGGEGTSKQTLEKDDLDAI-----KEIGSNIFGALTTALQAQ 111 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-------------I 200 + + + + + +E V SSF + + Sbjct: 112 EVIPKLSFEVSEAVDAQDASLLDPYSDGYE--FGFELEQVKSSFFIFCGGVFIDLFKKKV 169 Query: 201 IPQETLLK----TTLISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTL 253 PQ T + + L AR + +N+ RI KK L Sbjct: 170 APQNTSKPRNAPSMPNLPVVPTERTESDGHLEQLEARNINMLLDIKLNVRVRIGQKKMIL 229 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 KDVV++ IG VI + + K I E+ V N+ I+ITD I + L+ Sbjct: 230 KDVVSMDIGSVIELNQMVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGSKRDRLEQ 288 Query: 314 F 314 Sbjct: 289 L 289 >gi|157850891|gb|ABV90252.1| flagellar motor switch protein [Bacillus subtilis subsp. sadata] Length = 110 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 4/108 (3%) Query: 206 LLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 L Q+ + ++ + + + + T+++ ++L++G Sbjct: 1 LEPLIPKLSVHYWMQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVG 60 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309 I + K + + GRV + ++I D I +Q Sbjct: 61 DCITLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQAVQILDHDIRGEQD 108 >gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella aurantiaca DW4/3-1] gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella aurantiaca DW4/3-1] Length = 441 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 84/274 (30%), Gaps = 17/274 (6%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102 + L K D + ++ S Q F + + + + + + Sbjct: 61 AEPLYARLKALFDAESRVNLVSVQIRPFQELQRYLGDPSFLAVLAPGALKERVVLEVELP 120 Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 L L++ LLG ET + R L+ +E+ + + + L + + Sbjct: 121 LAHNLVDMLLGGVGET---VGLRPLTDIEEGVMSFVVLEALKALAPALDPSLPKLRLETV 177 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-LKTTLISLSSQNKSE 221 + + + V I++N ++ L+IP + + + + Sbjct: 178 ARGAE--EVADRLGEEDRVVVIHLNASLGPHTGLVRLVIPTGVVGAAELAQAAAERRSQV 235 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-------LHREKTC 274 N L + + I + +D+ +++ V+ E+ Sbjct: 236 NTDLQLNRWM---LSTVRTWLRAEIGQAEIASQDLAYIRVKDVVLLDALTARPDRGEEGT 292 Query: 275 AILSAN-GKEIYSCELGRVGKNYTIRITDRINFD 307 A+L G E+ Y R+T + + Sbjct: 293 AVLRVGMGSSRVEAEVFLEDGQYKARVTSIVIGE 326 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 SS+++ ++ + + + I + T +VV+L++G V+ Sbjct: 351 SSESEGQSLDTMNKSEGSDLLADIPLQIAVELARVPVTADEVVSLRVGHVLELHRSPGEP 410 Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300 LS NGK + EL V +R+ Sbjct: 411 VELSVNGKVVARGELVEVEGQLGVRV 436 >gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC 51449] gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449] Length = 278 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 20/274 (7%) Query: 50 FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLL 108 + M +S+T S + + + S + + + + L Sbjct: 16 IEGLMGKTPSVSHTQDDSVS----LENLPTPYAISYIQASGDGNGEIAMVIPVEMGTALA 71 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 + +LG E ++ + L +++ ++ +S LN + + + + I Sbjct: 72 DMMLGGEGEVKSEMSDDDLDAIKE-ISSNIFGAVSTSLNSQ-NELPKLNFTCSNIEFIT- 128 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228 N + F N T++++ S+F ++ + + + S+Q + Sbjct: 129 ----ENMDLSRFDKAYIFNFTLDSIQSNFTILANKSFVELFEGGNTSAQAAPAESAAQTN 184 Query: 229 DPFA-------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + + +N+ RI K+ LKDV+ + IG VI + + Sbjct: 185 PALSATEYKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEILVDD 244 Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 K I E+ V N+ I+ITD I + L+ Sbjct: 245 KVIAKGEVVIVDGNFGIQITD-IGTKRDRLEQLR 277 >gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM 1251] gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251] Length = 283 Score = 96.2 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 86/249 (34%), Gaps = 15/249 (6%) Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + +S+ + + LV +L + ++G + L K Sbjct: 41 VPPIVLLNVSVSGDTNSSAMLALTPRLVASLSDMMMGEDQSNREDVSEDDLDAA-----K 95 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + I ++ + +E + +I+Y+ +N + + + I S Sbjct: 96 EIASNIFGAISNSLGAQKELPKLSFNIDNIEYIDENKDVSLENYSKMFVYHFVIGETNSL 155 Query: 197 FVLIIPQ--ETLLKTTLISLSSQNKSENQSEDLIDPFARK-------TYQLNVNIDTRIN 247 +LI+ + +L +L K+E+ + + + + RI Sbjct: 156 LMLIMDENLSNILFQKDKTLGDDRKNESNKNSATVSLSSDEMSNIALIMDVKLPVKVRIG 215 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 KK LKDV+ + IG VI + + I E+ V N+ ++IT I Sbjct: 216 KKKMLLKDVLNMDIGSVIELNQLANDPLDILVDDNVIAEGEVVIVDGNFGVQITS-IGTK 274 Query: 308 QKSLKNFLH 316 ++ L Sbjct: 275 RERLNQLKS 283 >gi|57241941|ref|ZP_00369881.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195] gi|57017133|gb|EAL53914.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195] Length = 279 Score = 96.2 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 97/279 (34%), Gaps = 21/279 (7%) Query: 50 FKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104 F + ++ ++ S + ++ + K V+ +S I L+ Sbjct: 9 FTNECVSTIEGLTGKSAEFSEYKEFDVSASDTLKPPLVYVNFGVS-SGGRIGILAGAVLM 67 Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 + E ++G T K+ + I+ + L + +L Sbjct: 68 SAIGEWMMGEEKITKNDKLGADEMDAAKEAIQNIISAFTTSLG-AQKELPKMEFSLSSCE 126 Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSE 221 I+ + +FV N ++ I+ + L + +TL K+ + + Sbjct: 127 FIE-----ESIDLKDFVKLYNYDIKIDGLEEQISLAMDDKLYKTLTKSGDAKAQQKEGAI 181 Query: 222 NQSEDLI---DPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + E ++ + + + + RI KK LKDV+T+ IG V+ Sbjct: 182 SSGEAMMMLGEGLKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLE 241 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + K I E+ V N+ ++IT+ I ++ L+ Sbjct: 242 ILIGDKRIAYGEVVIVDGNFGVQITE-IGTKKERLEQLR 279 >gi|254477766|ref|ZP_05091152.1| Surface presentation of antigens protein [Ruegeria sp. R11] gi|214032009|gb|EEB72844.1| Surface presentation of antigens protein [Ruegeria sp. R11] Length = 448 Score = 96.2 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 17/291 (5%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 ++AR + K SS ++ + + + DL V + + + Sbjct: 16 VIARKLAATKEGKG-ALTSSLTLKALRRSIARAAADLCDLPVAVLAARQANRVPEDLAAH 74 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + LV L++ R + + + Sbjct: 75 LSDKHLLVVLD-GPAGRIGAATLDAPLVTALIQQQTMGQVLGKA-PSERHYTPTDAAMVA 132 Query: 137 RTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI--EN 192 + + + +S ++ ++ ++ L E I++ + + Sbjct: 133 DFLERTFGKVVSMLSGQKDEVIFSGYRFGAQVENVRSLVLGLEAEDYRLIDLTVDLACGA 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + + LI+P+ T N S+ + + + + Sbjct: 193 MQGNMTLILPEPTAEDL---------GKANGSQHAGPSLGSNLGAMRAELQAVLCKMRVP 243 Query: 253 LKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +L G ++P +++ +G+ I LG++ +R+TD Sbjct: 244 ANAFTSLAKGDLLPLDQAYLYETEMVAISGQVIAQGRLGQMNGARAVRLTD 294 >gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] Length = 278 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 20/286 (6%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + + M +++TS + ++ S + + QAS S + Sbjct: 4 FIDLIVQEATATIEGLMGKTPSVTHTSDSNVSLENL--SIPYSISYIQASGDG-SGELAM 60 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + L + +LG E+ P++ L +++ ++ IS LN + + Sbjct: 61 IIPVAMATALADMMLGGEGESKPEMSEDDLDAIKE-ISANIFGAISTSLNSQ-KELPKLN 118 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI--------IPQETLLKT 209 + + + + + F N +++++ S+F ++ Sbjct: 119 FSCSNIEFVT-----QSIELSRFDKAYIFNFSLDSIQSNFTILANASFVGLFEGGAATPV 173 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 S + S + +N+ RI K+ LKDV+ + IG VI Sbjct: 174 AHAESGSTPVAHALSPTEFKNINM-ILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQ 232 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + + K I E+ V N+ I+ITD I + L+ Sbjct: 233 LANDPLDILVDDKVIAKGEVVIVDGNFGIQITD-IGTKRDRLEQLR 277 >gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund 17B] gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str. Eklund 17B] Length = 385 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 31/346 (8%), Positives = 99/346 (28%), Gaps = 64/346 (18%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90 + + +G + + ++ +V+I+ + SF+ + Sbjct: 42 KDLLGEIGNISMGSASTALYQIINQNVNITTPVVSLTTLKDMKASFETPNIILDVEYTEG 101 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQC 149 + + + ++G + + + ++ + I + + Sbjct: 102 IIGRNILVMRTDDAAVIANLMMGGDGKVPENPELSEIEVSAVQEAMNQMIGSAATSMATM 161 Query: 150 ISTTQE---------------SSPNLEDFYDIDYLKK------------NTNRLSNEFVT 182 S + + L + +I + N Sbjct: 162 FSRRVDISPPTSKLWKEKDEPITETLSEDEEIVRVSFRLIIGDLVDSNIMQILPLNTAKK 221 Query: 183 TINMNMTIENVASSFV---------------------------------LIIPQETLLKT 209 +++ M E+ ++ + ++ + Sbjct: 222 IVSIMMGEEDASTEAIESAKVVEEKPRVQATNQKVNVHEQVQTTIKAKPIVEAPKVQEPI 281 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + + + + + ++I + K ++KD++ L G +I Sbjct: 282 EVHEAAFETLVPGDTSQVPKNI-DLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDK 340 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + + NGK+I E+ V +N+ +RIT ++ + + +K+ Sbjct: 341 LAEEPVEILVNGKKIAYGEVVVVDENFGVRITSIVS-NAERIKSLR 385 >gi|167464155|ref|ZP_02329244.1| flagellar motor switch protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382381|ref|ZP_08056288.1| flagellar motor switching and energizing phosphatase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153734|gb|EFX46109.1| flagellar motor switching and energizing phosphatase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 415 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 31/298 (10%), Positives = 78/298 (26%), Gaps = 48/298 (16%) Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 S++ + + + V+IS + S + + VF + S Sbjct: 144 LSAVQEAMNQMMGSSATSMSIIFNRLVNISPPGIDIMRLSEGEGNLPDEDVFIKISFRLT 203 Query: 92 SS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + ++ N+LG + E++ Sbjct: 204 IGDLIDSTIMQLLPVDFSKEMVSNMLG------------EGTQTEEET------------ 239 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 ++ E + + + + + + S L P Sbjct: 240 AAALTMEPELTSSASIPEEKEVQPPMPASQHDYT--QAPPARQQPHEGGSAYLASPAYKE 297 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFA------------RKTYQLNVNIDTRINLKKTTLK 254 S ++ N + + + + +K Sbjct: 298 EP--AASSGMMQRNVNVQPVQFSNLQAGGYAQADETNLNLLLDIPLKVTVELGRTNKMIK 355 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 D++ L+ G ++ + N K I E+ + +N+ +R+TD ++ + K Sbjct: 356 DILELQQGSIVELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVTDIVSQFDRIQK 413 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 71/230 (30%), Gaps = 15/230 (6%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + S P + L+G D +G + + V+I+ Sbjct: 29 EGGSSYSPAVEDFLSGLEQDA------LGEIGNITFGSAATALSTLLGKKVEITTPKVSV 82 Query: 68 GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 +++ F + + + + + + + ++G + Sbjct: 83 IAREDLVNEFSKPHVAVHVKYVDGFHGINLLVIKRSDAQVIADLMMGGDGHPETDELSEI 142 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV-TTIN 185 + ++ + + + ++ + SP D + + N L +E V I+ Sbjct: 143 HLSAVQEAMNQMMGSSATSMSIIFNRLVNISPPGIDIMRLSEGEGN---LPDEDVFIKIS 199 Query: 186 MNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +TI + + S+ + ++P + + + + + E+ + Sbjct: 200 FRLTIGDLIDSTIMQLLPVDF---SKEMVSNMLGEGTQTEEETAAALTME 246 >gi|114766080|ref|ZP_01445089.1| possible flagellar switch protein FliM [Pelagibaca bermudensis HTCC2601] gi|114541635|gb|EAU44676.1| possible flagellar switch protein FliM [Roseovarius sp. HTCC2601] Length = 396 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 31/298 (10%), Positives = 82/298 (27%), Gaps = 24/298 (8%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT--SCQSGKF 70 P + + + S+ K L + D+ D++ + Sbjct: 2 GDPARQDEVLAQKASAARRALEARSMSP--SKALRRALSRTADVLWDLALVTHGVEQAHL 59 Query: 71 SH--IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 ++ + + + ++ L+E +P + R L+ Sbjct: 60 DQDGVVAALGGDALLILLD-GPDGVPGVARIERPVMTGLIEVQTILQVTQMP-VEERPLT 117 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-----LSNEFVTT 183 + + + + + P + F ++ + S Sbjct: 118 QTDAAMMAPLLDSALERFERYLED-HPLQPQIAGFRFGAMVEDSRTAGLLLDASGYRAFR 176 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 +++++ + L +P + + + +K L V++D Sbjct: 177 VSLDLALGRRTGELALFLP----DRAEAAAADEAGDLGQEGPH-----EQKMKLLPVHMD 227 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN-GKEIYSCELGRVGKNYTIRI 300 ++ L L+ G +IP L A G + LG++ +R+ Sbjct: 228 AVLHRLVLPLSAAEKLQPGDLIPLPPEALDGVELLAGDGSGVAGGRLGQINGMRAVRL 285 >gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 398 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 39/354 (11%), Positives = 92/354 (25%), Gaps = 74/354 (20%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSS 90 + +G + + V I+ + + F+ + Sbjct: 44 KDTLGEVGNISMGTAATTLSTLLRKKVSITTPDVSVTNPEELQLLYPLPFLVVEVSYTQG 103 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIP--QLYNRSLSTVEKKLAKRT---------- 138 + + + + ++G + L + LS V + + + Sbjct: 104 VTGTNVLVIKEEDAAIIADLMMGGDGLSAEGKNLGDLELSAVGEAMNQMMGSATTSLSSM 163 Query: 139 ----------------IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN--EF 180 + + L+ + +E ++ + E Sbjct: 164 FNQRIDIAPPQLTVIDMGKEFLQLSTSFDDVVKIKFKME-IENLINSEIMQIIPMEAVEN 222 Query: 181 VTTINMNMTIENVASSFVLIIP----------------------------------QETL 206 + +I + T E ++ V+ P Q + Sbjct: 223 IMSILLGSTAEESSAEAVMEEPLVGMPLPETKAAAVAAPRQAETAISPPPQEPIYGQAFV 282 Query: 207 LKTTLISLSSQ--------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 +S Q + + + +++ + K T+ +++ Sbjct: 283 QSPREMSNRPQFAVQPVQFAPLQESNMLHSPQNLDLIMDVPLDVSVELGKTKKTIGEILE 342 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L G +I L NGK I E+ + +NY IRIT I+ + K Sbjct: 343 LNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDENYGIRITTIISPIDRMNK 396 >gi|153951920|ref|YP_001397324.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. doylei 269.97] gi|152939366|gb|ABS44107.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei 269.97] Length = 273 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 21/265 (7%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ +++ I L+ + E ++G T Sbjct: 17 SAEFSEYKEFDVNASDTLKAPLVYAIFDIAN-GGKIGILAGTVLMSAIGEWMMGEEEITK 75 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 76 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 129 Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234 F ++ I ++ L + Q +L + + N + + + Sbjct: 130 FKKLFLYDVKIGDLEEQISLAMDQTLHNILSGKPAETGNASADSNHNAEEKAIMLSEELK 189 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 190 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 249 Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 250 IVDGNFGVQITE-IGSKKERLEQLR 273 >gi|315123664|ref|YP_004065668.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017386|gb|ADT65479.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 280 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 21/265 (7%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ +++ I L+ + E ++G T Sbjct: 24 SAEFSEYKEFDVNTSDTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136 Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234 F ++ I ++ L + Q +L + + N + + + Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELK 196 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256 Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280 >gi|88597660|ref|ZP_01100893.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 84-25] gi|88189964|gb|EAQ93940.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 84-25] Length = 280 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ ++++ I L+ + E ++G T Sbjct: 24 SAEFSEYKEFDVNTSDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136 Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234 F ++ I ++ L + Q +L + + N + + + Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256 Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280 >gi|283955503|ref|ZP_06372998.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792964|gb|EFC31738.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] Length = 280 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 21/265 (7%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ +++ I L+ + E ++G T Sbjct: 24 SAEFSEYKEFDVNASDTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136 Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234 F ++ I ++ L + Q +L + + N + + + Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELK 196 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256 Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280 >gi|163736146|ref|ZP_02143565.1| surface presentation of antigens (SPOA) protein [Phaeobacter gallaeciensis BS107] gi|161390016|gb|EDQ14366.1| surface presentation of antigens (SPOA) protein [Phaeobacter gallaeciensis BS107] Length = 460 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 29/291 (9%), Positives = 85/291 (29%), Gaps = 16/291 (5%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 +LAR + K SS ++ + + + DL V + + + Sbjct: 16 VLARKLAATKEGKG-GLTSSLTLKALRRSIARAAADLCDLPVAVLAARQANRIPEDLPPH 74 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + V L++ R+ + + + Sbjct: 75 LSDKHLLVVLDGPNGR-IGAATLDAPTVTALIQQQTMGQVLGKA-PSERNYTPTDAAMVA 132 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIEN 192 + + A + ++ ++ + + + + V + +++ Sbjct: 133 DFLERTFAKVVSMLAQQKDEAIFSGYRFGAQVEDVRSLVLGLEAEDYRVIELTLDLACGA 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + LI+P+ + ++ + + + + K Sbjct: 193 MQGGLTLILPEPSPEDL--------GEAGQNAHQAGPSLGSNMGSMRAELRAVLCRMKVP 244 Query: 253 LKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + L+ G ++P ++S +G+ I LG++ +R+TD Sbjct: 245 ANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAVRLTD 295 >gi|163741324|ref|ZP_02148716.1| hypothetical protein RG210_17730 [Phaeobacter gallaeciensis 2.10] gi|161385677|gb|EDQ10054.1| hypothetical protein RG210_17730 [Phaeobacter gallaeciensis 2.10] Length = 460 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 29/291 (9%), Positives = 85/291 (29%), Gaps = 16/291 (5%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 +LAR + K SS ++ + + + DL V + + + Sbjct: 16 VLARKLAATKEGKG-GLTSSLTLKALRRSIARAAADLCDLPVAVLAARQANRIPEDLPPH 74 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + V L++ R+ + + + Sbjct: 75 LSDKHLLVVLDGPNGR-IGAATLDAPTVTALIQQQTMGQVLGKA-PSERNYTPTDAAMVA 132 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIEN 192 + + A + ++ ++ + + + + V + +++ Sbjct: 133 DFLERTFAKVVSMLAQQKDEAIFSGYRFGAQVEDVRSLVLGLEAEDYRVIELTLDLACGA 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + LI+P+ + ++ + + + + K Sbjct: 193 MQGGLTLILPEPSPEDL--------GEAGQNAHQAGPSLGSNMGSMRAELRAVLCRMKVP 244 Query: 253 LKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + L+ G ++P ++S +G+ I LG++ +R+TD Sbjct: 245 ANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAVRLTD 295 >gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92] gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein [Campylobacter curvus 525.92] Length = 286 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 104/289 (35%), Gaps = 28/289 (9%) Query: 46 LPKIFKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFS-QASLSSWSSNFFIGC 99 +F ++ V+ ++ + + G+ + + K V + ++ I C Sbjct: 5 FFNLFTNELKATVEGLTGRTPEVGERNDFDAPTQNGIKPPVVMASVMLSGDVNAKAEIVC 64 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + LV + E ++G N +L E AK + + + + + + P Sbjct: 65 TPVLVSAISEWMMG----EEEISRNEALGADELDAAKEIFSNLLSAFSTSLGAQKGM-PK 119 Query: 160 LEDFYDIDYLKKNTNRLSNEFVT---TINMNMTIENVASSFVLIIPQETL---LKTTLIS 213 + ++I + + +F ++ IE++ + + T + Sbjct: 120 IS--FEIVNVNFLDENSALDFSVYEKLFLFSVKIEDINEHIGFVCDHTLMKFFEPTKVGE 177 Query: 214 LSSQNKSE------NQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 SQ+ + ++SE + + + I RI K+ LKDV+++ IG VI Sbjct: 178 SESQSGDQAKATHGSRSEFSAEEMRNINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVI 237 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + K I E+ + N+ I+IT I ++ L+ Sbjct: 238 ELNQLANDPLEILIGDKVIALGEVVIIDGNFGIQITQ-IGSKRERLQQL 285 >gi|148926865|ref|ZP_01810543.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|167004760|ref|ZP_02270518.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356442|ref|ZP_03223206.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|145844442|gb|EDK21550.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205345629|gb|EDZ32268.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|315057500|gb|ADT71829.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni S3] Length = 280 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ ++++ I L+ + E ++G T Sbjct: 24 SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136 Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234 F ++ I ++ L + Q +L + + N + + + Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256 Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280 >gi|57237069|ref|YP_178081.1| flagellar motor switch protein FliY [Campylobacter jejuni RM1221] gi|121612924|ref|YP_999785.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 81-176] gi|57165873|gb|AAW34652.1| flagellar motor switch protein [Campylobacter jejuni RM1221] gi|121504209|gb|EAQ71980.2| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 273 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ ++++ I L+ + E ++G T Sbjct: 17 SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 75 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 76 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 129 Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234 F ++ I ++ L + Q +L + + N + + + Sbjct: 130 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 189 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 190 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 249 Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 250 IVDGNFGVQITE-IGSKKERLEQLR 273 >gi|86151260|ref|ZP_01069475.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841607|gb|EAQ58854.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 280 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 88/266 (33%), Gaps = 23/266 (8%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ +++ I L+ + E ++G T Sbjct: 24 SAEFSEYKEFDVNTSDTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP----FARK- 234 F ++ I ++ L + Q TL + + S + + + Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQ-TLHNILSGKPAETGNTSTDSNHNAEEKAIILSEEL 195 Query: 235 -----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 196 KNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEV 255 Query: 290 GRVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 256 VIVDGNFGVQITE-IGSKKERLEQLR 280 >gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1] gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5] gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5] gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1] Length = 293 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 38/303 (12%), Positives = 89/303 (29%), Gaps = 31/303 (10%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + L+ + + +++ S I F N + ++ + Sbjct: 1 MIDDFLKLFTQEFISTIGGLLGKVPEVALKS--EISVGDFI--FVNNASINV-HIADTNL 55 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 + + L + ++G ++ L L + K + + L + + Sbjct: 56 TITLAIPIPMATALADLMVGGEGKSKETLEPDDLDAI-----KEIGSNVFGALTTALKSQ 110 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF----VLIIPQETLLKT 209 + + + + + ++ + + I + Sbjct: 111 EVLPKLSFEIEGAVFAHDASLLDPYSDGFEFSFSLDQIQSSFFIFCGGLFIETFKKKEVI 170 Query: 210 TLISLSSQNKS--------------ENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTL 253 IS Q + + + +N+ RI KK L Sbjct: 171 KNISKPIQGPAMPNIPVVQHNNDHVDGDHPLEQTEIRNINMLLDIKLNVRVRIGQKKMIL 230 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 KDVV++ IG V+ + + K I E+ V N+ I+IT+ I ++ L+ Sbjct: 231 KDVVSMDIGSVVELNQMVNDPLEILVDDKVIAKGEVVIVDGNFGIQITE-IGTKKERLEQ 289 Query: 314 FLH 316 + Sbjct: 290 LKN 292 >gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277] gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277] Length = 277 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 89/241 (36%), Gaps = 8/241 (3%) Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 V + A ++ + + L+ + E +LG N +LS E AK Sbjct: 42 PPLAVANIAVSGDTTAKMILVATPVLMSAIGEWMLG----EEEISRNENLSEDELDAAKE 97 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 + I + + + + +++L ++ N N F ++ I +V+ Sbjct: 98 VFSNIMGAFSTSLGAQKGMPKLNFEVAKVNFLDESANFDLNAFEKIYVYSVKIGDVSEQI 157 Query: 198 VLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLK 254 +++ + +Q + + + I+ + + + RI K+ LK Sbjct: 158 AVVLDFALVKFLNKDHKEPAQQATPAKGDLSIEEMRNIGLIMDVCLPLHVRIGSKRMLLK 217 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 DV+T+ IG VI + + K + E+ V N+ I+IT I ++ L+ Sbjct: 218 DVLTMDIGSVIELNQLANDPLEILISDKVVALGEVVIVDGNFGIQITQ-IGTKKERLEQL 276 Query: 315 L 315 Sbjct: 277 R 277 >gi|315638333|ref|ZP_07893513.1| flagellar motor switch protein [Campylobacter upsaliensis JV21] gi|315481600|gb|EFU72224.1| flagellar motor switch protein [Campylobacter upsaliensis JV21] Length = 281 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 98/281 (34%), Gaps = 23/281 (8%) Query: 50 FKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104 F + ++ ++ S + ++ + K V+ +S I L+ Sbjct: 9 FTNECVSTIEGLTGKSAEFSEYKEFDVGASDTLKPPLVYVNFGVS-SGGRVGILAGAVLM 67 Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 + E ++G T K+ + I+ + L + +L Sbjct: 68 SAIGEWMMGEEEITKNDKLGADEMDAAKEAIQNIISAFTTSLG-AQKELPKMEFSLSSCE 126 Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSE 221 I+ + +FV N ++ IE++ L++ +TL K+ ++Q K Sbjct: 127 FIE-----ESIDLKDFVKLYNYDIKIEDLEEQISLVMDDKFYKTLTKSGDDEATTQQKEG 181 Query: 222 NQSEDLI-----DPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 S + + + + RI KK LKDV+T+ IG V+ Sbjct: 182 AVSSGEAMMTLGEGLKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDP 241 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + K I E+ V N+ ++IT+ I ++ L+ Sbjct: 242 LEILIGDKRIAYGEVVIVDGNFGVQITE-IGTKKERLEQLR 281 >gi|157414373|ref|YP_001481629.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 81116] gi|157385337|gb|ABV51652.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|315931623|gb|EFV10588.1| Flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 327] Length = 280 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ ++++ I L+ + E ++G T Sbjct: 24 SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136 Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234 F ++ I ++ L + Q +L + + N + + + Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELK 196 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256 Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280 >gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp. fetus 82-40] gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus 82-40] Length = 276 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 7/236 (2%) Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 V + + + L+ + + +LG N ++ E +K + Sbjct: 45 VVANINVSGDINGKIIFIATPLLITAINDLMLG----EEEPTKNLNIGDDELDASKEIFS 100 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 I + ++ ++ ++ + + YL +N + + +T+ ++ L+ Sbjct: 101 NILSAISTSLTAAKDMPKLSFEIQKVVYLDENQILDLSSYEKLFLCPVTMGDINEHIGLV 160 Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVT 258 I + + D+ + + + I RI KK LKDV++ Sbjct: 161 IDFAFNKYFNKSDEKHTKEIPHLKADITEEIKNIGLIMDVRLPIRVRIGSKKMLLKDVLS 220 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + IG VI + K++ E+ V N+ ++IT+ I ++ L+ Sbjct: 221 MDIGSVIELNQLANDPLEVLIGDKQVALGEVVIVDGNFGVQITE-IGTKKERLEQL 275 >gi|86149628|ref|ZP_01067858.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|218561744|ref|YP_002343523.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839896|gb|EAQ57155.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|112359450|emb|CAL34233.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925355|gb|ADC27707.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni IA3902] gi|315927742|gb|EFV07069.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929163|gb|EFV08388.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 305] Length = 280 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ ++++ I L+ + E ++G T Sbjct: 24 SAEFSEYKEFDVNTSDTLKAPLVYAIFNIAN-GGKIGILAGAILMSAIGEWMMGEEEITK 82 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136 Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234 F ++ I ++ L + Q +L + + N + + + Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256 Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280 >gi|221200569|ref|ZP_03573611.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2M] gi|221209244|ref|ZP_03582234.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2] gi|221170900|gb|EEE03357.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2] gi|221179910|gb|EEE12315.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2M] Length = 385 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 17/291 (5%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 L P+ G D I ++L L + V++ + H Sbjct: 100 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 158 Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 F W + + + + AS P + + Sbjct: 159 AS---PAALRFELRRADGAWRCHGALLFDAPDALAV----FFASAPAAPPDAAALYANLP 211 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 L + + +E ++ + R+ I + Sbjct: 212 VPLVFEIGRTELT-MAELADVVGGDIIAIERWHAHEQNLLCVARVPAAPAWEITGRPSGS 270 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + + +P L T + + + + S L V++ + Sbjct: 271 RLTVERIREMP---LEPTRTDTPPATGTAHDASPADAPR---ALDGLAVDLRFELPPTSM 324 Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 L ++ L+ G VI L ANG I + L VG+ +R+ Sbjct: 325 PLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 375 >gi|86154056|ref|ZP_01072257.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842470|gb|EAQ59684.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni HB93-13] Length = 280 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ ++++ I L+ + E ++G T Sbjct: 24 SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAILMSAIGEWMMGEEEITK 82 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136 Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234 F ++ I ++ L + Q +L + + N + + + Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256 Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280 >gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2] gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580] gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2] Length = 377 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 29/347 (8%), Positives = 89/347 (25%), Gaps = 59/347 (17%) Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVF 83 G + +G + ++ V+I+ + + SH+ F Sbjct: 29 SGLSLMEQDTIGEIGNISFGSSATALSTLLNQKVEITTPTVSVIEKSHLNDEFPHPYVSI 88 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + +S N + + + ++G + ++ + + + Sbjct: 89 GVSYTEGFSGNNLLVIKQEDAAIIADLMMGGDGTNADPSLGEIHLSAVQEAMNQMMGSAA 148 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP 202 ++ S + SP D D+ + + + ++ + + + + S + + P Sbjct: 149 TSMSTVFSKKIDISPPEVDLLDVKEGEGTEQIPKEDPLVKVSFRLKVGDLIDSHIMQLYP 208 Query: 203 QETLLKTTLISLSSQNKSENQSEDLID-------------------------------PF 231 + E + + Sbjct: 209 LTFAKDLIDELTNQDGGEEPVKTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKRQGTAKV 268 Query: 232 ARKTYQLNVNIDTRINLKK-------------TTLKDVVTLK-----IGQVIPF------ 267 + + + L V L + +V+ Sbjct: 269 SEPVQVAPAEFQSFAPQTEAQPHLQNLDMLMDIPLSVTVELGRTNRSVKEVLELSTGSII 328 Query: 268 --LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + N + + E+ + +N+ +R+TD ++ ++ K Sbjct: 329 ELDKLAGEPVDILVNQRVVAKGEVVVIDENFGVRVTDILSQAERISK 375 >gi|126732535|ref|ZP_01748333.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37] gi|126706981|gb|EBA06049.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37] Length = 368 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 28/268 (10%), Positives = 77/268 (28%), Gaps = 19/268 (7%) Query: 43 KKFLPKIFKEKMDLDVDISYTS----CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98 K L + D+ D++ + +S ++ + + Sbjct: 4 AKALRRALSRTADVMWDLALVTQSVTVESLDQDGVVEGLSAKDLLVLLD-GPDGTIGLAS 62 Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI--STTQES 156 ++ ++E +P +R L+ + + I + + S E Sbjct: 63 VDRQVMTGVVEVQTIQQVTQMPVDEDRVLTQTDAAMIAPLIDGTLHSMAGALADSPIGEM 122 Query: 157 SPNLEDFYDIDYLKKNTNR--LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214 ++ + + + +++ + I+P+ + Sbjct: 123 LQGFRFGAMLEDARSASLLLDAAGYRAFRAQVDLALGRRKGCLSFILPERKPVP----RS 178 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + Q ++ A ++ +D ++ L TLK G V+ Sbjct: 179 AEQGGADAAGPH-----AAILDRVPARLDAVLSRITLPLSRAQTLKPGDVLKLSKDALDR 233 Query: 275 AILSAN-GKEIYSCELGRVGKNYTIRIT 301 + A G + +G++ +R+T Sbjct: 234 VEIIAGRGHMVAKGRMGQLNGARAVRLT 261 >gi|187732543|ref|YP_001879724.1| flagellar motor switch protein FliM [Shigella boydii CDC 3083-94] gi|187429535|gb|ACD08809.1| flagellar motor switch protein FliM [Shigella boydii CDC 3083-94] Length = 122 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 3/108 (2%) Query: 200 IIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 +P + + ++ + S N+ ++ D R+ + + T L ++ Sbjct: 6 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVTNFADISLRLSQILK 65 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK G V+P I +G + + + G + Y +RI IN Sbjct: 66 LKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 111 >gi|283955446|ref|ZP_06372944.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] gi|283793073|gb|EFC31844.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] Length = 280 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 21/265 (7%) Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 S + ++ + K V++ ++++ I S L+ + E ++G T Sbjct: 24 SAEFSEYKEFDVNASDTLKAPLVYAIFNITN-GGKIGILASAVLMSAIGEWMMGEEEITK 82 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 K+ + I+ S L + ++E + + + Sbjct: 83 NDQLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136 Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234 F ++ I ++ L + Q +L L + N N++ + + Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKLAETGNANTDSNRNAEEKAIMLGEELK 196 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI KK LKDV+T+ IG V+ + K I E+ Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256 Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315 V N+ ++IT+ I ++ L+ Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280 >gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT 98-5491] gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491] gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491] Length = 285 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 80/248 (32%), Gaps = 21/248 (8%) Query: 83 FSQASLSSWSSNFF-IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 ++ + + + S + L + +LG T + + L ++ + Sbjct: 44 MARVDIEADNGAKLAFFISPKVATALADMMLGGEGSTKETMDDDDLDATKE-IVSNIFGA 102 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 +S L + S +L+D + I F + + + S L Sbjct: 103 VSTSLG-AQKELPKLSFSLKDIHFISETADLETDRFTNFY---TFSFNLGTIQDSLFLAF 158 Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK--------------TYQLNVNIDTRIN 247 +E S + ++ S + + + + RI Sbjct: 159 SEEFENLFKENSQETNQETPQPSIQNTNHQDNAALELNNAEMKNMAMLLDVRLQVKVRIG 218 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 KK LKDV+ + IG V+ + + K I E+ V N+ I+IT+ I Sbjct: 219 QKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVVIVDGNFGIQITE-IAPK 277 Query: 308 QKSLKNFL 315 + ++ + Sbjct: 278 KDRIEQLM 285 >gi|84686561|ref|ZP_01014454.1| possible flagellar switch protein FliM [Maritimibacter alkaliphilus HTCC2654] gi|84665474|gb|EAQ11951.1| possible flagellar switch protein FliM [Rhodobacterales bacterium HTCC2654] Length = 378 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 19/269 (7%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQS----GKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98 + L + + +S + Q + I+ E+ + + I Sbjct: 29 ARILRTAIMQAGEDVAALSIVAGQPEEMRTTLAPIVEGIGEHALMALIEGPEGR-YGLIL 87 Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ-CISTTQESS 157 + + L+E P R + + + I ++ +L + + Sbjct: 88 VDPDTLAALIEIQTTGRVVPRPATA-RPPTRTDAIMCADFIDRVLELLEDRTAEADIDIA 146 Query: 158 PNLEDFYDIDYLKKNTNRLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 P L F L + +++++ + +I+P Sbjct: 147 PALGGFRYALALSEARAIPMTLDDVPYRRFHVSLDLGRGAKQGTLDVILPFN------AA 200 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + A + V + ++ + L +V L +G VIP Sbjct: 201 PSGAAAATNADPAGFTQALAEVVGEAEVLLRGTLHRLQMPLAEVAGLSVGSVIPIPREAL 260 Query: 273 TCAILS-ANGKEIYSCELGRVGKNYTIRI 300 + NG+ + LG G + IRI Sbjct: 261 GQVAIEDINGRTVKHGRLGMSGGHRAIRI 289 >gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] Length = 269 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 34/256 (13%), Positives = 88/256 (34%), Gaps = 17/256 (6%) Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + + I F+ S+S + + L + +LG E + Sbjct: 24 PEVEIKQQGEKIVDIIPPFIKVNVSVSP-KGEIVFILTPEIATALGDMMLGGEGEARTDI 82 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 + L ++ + +++ L + + + +ED ++ + +++ Sbjct: 83 NDEDLDATKE-IVSNIFGSLTSTL-EAQDNMENLTFKVEDIAFVETNEDF-----SKYAY 135 Query: 183 TINMNMTIENVASSFVLIIPQETL----LKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 +++ + +V ++ ++ + S ++ + +D + Sbjct: 136 FLDLICKVASVEKECFVLFDKDFVSIFNNDIKDKISESSHELNKEIPSQLDML----MDV 191 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + RI K LKDV+++ IG ++ + K+I E+ V N+ I Sbjct: 192 KLQLRVRIGKKTMLLKDVISMDIGSIVELDQLANEPLDILIEDKKIGEGEVVIVDGNFGI 251 Query: 299 RITDRINFDQKSLKNF 314 +IT I L + Sbjct: 252 QITS-IGSKADRLNSM 266 >gi|311086395|gb|ADP66476.1| flagellar motor switch protein FliM [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 300 Score = 92.8 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82 G+ + KI + + K F + V++ S + G + Sbjct: 2 GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 61 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141 + + + FI N + +++ L G + R +++ E + K+ + Sbjct: 62 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 121 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 I+ ++ N + KK L+ F+ N I N F +I Sbjct: 122 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 180 Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 P+ L K S +N ++ + Y + VNI ++I + + Sbjct: 181 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 239 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L +G V+ + I+ R + I I + I+ + Sbjct: 240 YNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 290 >gi|219682014|ref|YP_002468398.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621747|gb|ACL29903.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 315 Score = 92.8 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82 G+ + KI + + K F + V++ S + G + Sbjct: 17 GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 76 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141 + + + FI N + +++ L G + R +++ E + K+ + Sbjct: 77 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 136 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 I+ ++ N + KK L+ F+ N I N F +I Sbjct: 137 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 195 Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 P+ L K S +N ++ + Y + VNI ++I + + Sbjct: 196 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 254 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L +G V+ + I+ R + I I + I+ + Sbjct: 255 YNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 305 >gi|257471133|ref|ZP_05635132.1| flagellar motor switch protein FliM [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] Length = 300 Score = 92.8 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82 G+ + KI + + K F + V++ S + G + Sbjct: 2 GESKNLHNEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 61 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141 + + + FI N + +++ L G + R +++ E + K+ + Sbjct: 62 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 121 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 I+ ++ N + KK L+ F+ N I N F +I Sbjct: 122 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 180 Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 P+ L K S +N ++ + Y + VNI ++I + + Sbjct: 181 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 239 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L +G V+ + I+ R + I I + I+ + Sbjct: 240 YNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 290 >gi|259416357|ref|ZP_05740277.1| surface presentation of antigens protein [Silicibacter sp. TrichCH4B] gi|259347796|gb|EEW59573.1| surface presentation of antigens protein [Silicibacter sp. TrichCH4B] Length = 432 Score = 92.4 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 25/290 (8%), Positives = 85/290 (29%), Gaps = 19/290 (6%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 LAR + T S ++ + + ++ +L + + + + Sbjct: 17 LARKLAASKE-GTAGTGGSLTLKALRRSVARAAEDLCELPMAVIAARQTNRVPEDLTGLL 75 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + V L++ + + R+ + + + Sbjct: 76 SDKHLLVVLDCPEGR-IGAATLDAAAVTALIQQQTMGTVLGMSG-DERNYTPTDAAMVAE 133 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENV 193 + ++ + + + + T + V +N+++ + Sbjct: 134 FLEKLFGKVTNLLEDQSDLRIFEGYRFGAQVEDVRTLVLGMEADDYRVINLNVDLATGKM 193 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 L++P+ ++ ++ + + + + + + L Sbjct: 194 QGEICLVLPEPSV-----------DEYDEANAVRGPRLGSSVGSMRAELSAVLCKMRIPL 242 Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302 + LK+G+++P ++ NG+ I LG++ +R+ Sbjct: 243 RQFSALKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQ 292 >gi|219681458|ref|YP_002467843.1| flagellar motor switch protein FliM [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219624301|gb|ACL30456.1| flagellar motor switch protein FliM [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 315 Score = 92.4 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 20/298 (6%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82 G+ + KI + + K F + V++ S + G + Sbjct: 17 GESKNLHNEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 76 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141 + + + FI N + +++ L G + R +++ E + K+ + Sbjct: 77 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 136 Query: 142 ISAVLNQCIST--TQESSPNLEDFYDID---YLKKNTNRLSNEFVTTINMNMTIENVASS 196 I+ ++ +E + + N L N N I N Sbjct: 137 ITNAFSEIYKKYFVKEINFFNTKIFFDFKKYNFDLNKLFLINC------FNFKINNTEIF 190 Query: 197 FVLIIPQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 F +IP+ L K S +N ++ + Y + VNI ++I Sbjct: 191 FNFLIPKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISV 249 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + L +G V+ + I+ R + I I + I+ + Sbjct: 250 SYDKIYNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 305 >gi|99081347|ref|YP_613501.1| surface presentation of antigens (SPOA) protein [Ruegeria sp. TM1040] gi|99037627|gb|ABF64239.1| hypothetical protein TM1040_1506 [Ruegeria sp. TM1040] Length = 420 Score = 92.4 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 28/290 (9%), Positives = 90/290 (31%), Gaps = 19/290 (6%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 LAR + T S ++ + + ++ +L + + + + Sbjct: 17 LARKLAASKE-GTAGTGGSLTLKALRRSVARAAEDLCELPMAVIAARQTNRVPEDLTGLL 75 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + V L++ + + R+ + + + Sbjct: 76 SDKHLLVVLDCPAGR-IGAATLDAAAVTALIQQQTMGTVLGMSG-DERNYTPTDAAMVAE 133 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENV 193 + ++ A ++ + + S + T + V +N+++ + Sbjct: 134 FLEKLFAKVSSLLEDQTDLSIFEGYRFGAQVEDVRTLVLGMEAEDYRVINLNVDLATGKM 193 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 L++P+ ++ ++ + + + + + + L Sbjct: 194 QGEICLVLPEPSV-----------DEYDEANAIRGPRLGSSVGSMRAELTAVLCKMRVPL 242 Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302 + TLK+G+++P ++ NG+ I LG++ +R+ Sbjct: 243 RQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQ 292 >gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH] gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH] Length = 270 Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 89/280 (31%), Gaps = 16/280 (5%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 L + + + + +IS S + K + + Sbjct: 3 EFKELLINEIKSTIEGLIGIAPEISILSETRD-----LGPTKPPYAKIVIRVKP-KGEIL 56 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 + L + +L +L + L +++ + + L Sbjct: 57 FLIPAEIATALGDLMLAGEGTPKTELNDDDLDAIKE-IISNVFGALKTTLG-AQDNMPNL 114 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216 + + + +D +E+ INM + +V ++ + + S Sbjct: 115 DFEIANVFAVD-----KEEDISEYAYAINMECKVNDVVKVCQVVFDESVYDILNPSTKSE 169 Query: 217 QNKSENQSEDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + + +++ +L + + + RI K LKDV+ + IG ++ K Sbjct: 170 GSSTPSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAKEP 229 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + K+I E+ V N+ I+IT I ++ L + Sbjct: 230 LDILIEDKKIGEGEVVIVDGNFGIQITS-IGSREERLNSL 268 >gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128] gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8] gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128] gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8] Length = 287 Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 96/285 (33%), Gaps = 27/285 (9%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + S + +++ S+ + +LV Sbjct: 14 STLEGLVGKAPSVGLEKEISSSDESFLKLISTPYARVKISAIEKEESSIELLAPVDLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125 Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225 + E + + +E + S ++++ E + Q + E ++ Sbjct: 126 TNAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTEAFEDQFKK--THQEEKEEATK 183 Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 I+ + +N+ RI KK LKDVV++ IG V+ Sbjct: 184 STIEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287 >gi|157373222|ref|YP_001471822.1| hypothetical protein Ssed_0081 [Shewanella sediminis HAW-EB3] gi|157315596|gb|ABV34694.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3] Length = 288 Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 89/297 (29%), Gaps = 28/297 (9%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + P+ L+ + ++ S L I ++ IS T Sbjct: 16 ERVRPV--ALIQEKLARSRLLIQVDACQRSFLEAANGVLNPIIRQGHHALSSISLTDSDQ 73 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 ++ + + + + L G S T+ + R+ Sbjct: 74 S----VVPDINNGWFLLRYQRLPLAWW---RIDKCTLDQLASGYYG-SLATLLKSPLRAP 125 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S E +LAK+ + VL P E + L+ N + + Sbjct: 126 SQSEFRLAKKLMLAALKVL-----------PTAELDENALELELVVNSTPIDSPVIWEIA 174 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 +E+ + + + + L +S Q + DL + + + Q+ + I + Sbjct: 175 FPVEHKVAPMLFCMT-----EHLLGLMSEQPSQYMATPDLAEKLSYRLRQIPIKILFELG 229 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + T + + L++G ++P + + ++ + ++ I Sbjct: 230 RQSTPVTSLHGLEVGDILPMNLHSRCPVT--VGKRPLFYAAIHTHDGQMVAKLAQDI 284 >gi|237751753|ref|ZP_04582233.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879] gi|229373119|gb|EEO23510.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879] Length = 283 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 105/283 (37%), Gaps = 12/283 (4%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 L+ + + M +++T ++ + V + + +S S Sbjct: 8 DFIELFIQEMVATIDGMMGRTAVVTHTGDTEVS-DSLLGTPFGKVVVNVSLGASQVSTLC 66 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 NL L + ++G +T + + +K K I+ L + ++ Sbjct: 67 FIMPENLATALPDLMMGGEGDTGKDMMD----DDDKDGLKEVFQSITGALATALGGHEKL 122 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLS 215 D+ ++ ++F T ++ I++V S +++ + L + Sbjct: 123 PHFSFAIADVSNVES--EGSLSDFDTASRFDVGIDSVKSELIMLTKNDLLTHVPKDLKAP 180 Query: 216 SQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + S N+ L D R + +++ RI K+ LKDV+++ IG V+ Sbjct: 181 ASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSVVELNQLAS 240 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + N K I E+ V N+ I+IT+ I ++ L++ Sbjct: 241 DPLEILVNDKIIGKGEVVVVDGNFAIQITE-IGTKKERLESLR 282 >gi|10802799|gb|AAG23621.1|AF244672_1 flagellar motor switch protein [Carboxydothermus hydrogenoformans] Length = 153 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 4/115 (3%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + ++ L G S + P++ R L+ +E + K+ ++ L Q + + P +E Sbjct: 1 EFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLAQAWAEIIKVEPEIE 58 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216 + + + NE V I I L +P E L +S Sbjct: 59 ALE--NNPRLHQVLSPNEIVAIITFTTEILGNNGLINLCLPFEVLDPLLAKLSAS 111 >gi|114798089|ref|YP_759234.1| SPOA domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114738263|gb|ABI76388.1| SPOA domain protein [Hyphomonas neptunium ATCC 15444] Length = 325 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 77/302 (25%), Gaps = 33/302 (10%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 P P L+ T + L + +E L S Sbjct: 40 TEPEAVPA-PKLVQEFTPA---PPAQGEAREEAARRISARLSRAMREHCGLAAAFSVKRV 95 Query: 66 QSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + E S + + L ++E G +P Sbjct: 96 SPASLAQAVSARDEPGQAIVCCSGADGDVAAMLVIGAGLAQIMIETACGG---PVPNGQP 152 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 ++LS ++ L + ++ L + + I Sbjct: 153 KALSPIDLALVEGLTRPLA----------PFIGRGLGFAGVETDPLFAASIAAPGVAYEI 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +++ L+ +LK L + + V + Sbjct: 203 TLSVRAGGADWPARLL-----VLKPFLAEAPEAEAAPTRGAHASGALT-------VLMTA 250 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE---IYSCELGRVGKNYTIRIT 301 R+ + + + +L+ G + L + G + ++GR G +RI+ Sbjct: 251 RVARVEMPISRLTSLRPGVTLLLGVPADQPVELLSGGLDGDVAAEAQIGRKGNRMALRIS 310 Query: 302 DR 303 R Sbjct: 311 KR 312 >gi|15616702|ref|NP_239914.1| flagellar motor switch protein FliM [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386787|sp|P57182|FLIM_BUCAI RecName: Full=Flagellar motor switch protein FliM gi|25403543|pir||H84938 flagellar motor switch protein fliM [imported] - Buchnera sp. (strain APS) gi|10038765|dbj|BAB12800.1| flagellar motor switch protein fliM [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 315 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82 G+ + KI + + K F + V++ S + G + Sbjct: 17 GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 76 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141 + + + FI N + +++ L G + R +++ E + K+ + Sbjct: 77 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 136 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 I+ ++ N + KK L+ F+ N I N F +I Sbjct: 137 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 195 Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 P+ L K S +N ++ + Y + VNI ++I + + Sbjct: 196 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 254 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L IG V+ + I+ R + I I + I+ + Sbjct: 255 YNLSIGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 305 >gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489] gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489] Length = 284 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 76/238 (31%), Gaps = 21/238 (8%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 +N + S + L + +LG + N L ++ + IS L Sbjct: 54 DANLALFISPKVATALADMMLGGEGTAKDTMDNDDLDATKE-ITSNIFGAISTSLG-AQK 111 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 + S L++ I + + F + ++ + K+ Sbjct: 112 ELPKLSFTLKNIQFITEDSELGLENFSGFY---TFAFNLGSIQDFLYFAF-SSSFEKSFN 167 Query: 212 ISLSSQNKSENQSEDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVV 257 + + + + + + + + + RI KK LKDV+ Sbjct: 168 PNTTEDSDNVALDANTQTEAEEEKFELNNAGLKNIAMLLDVRLQVKVRIGQKKMLLKDVI 227 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + IG V+ + + K I E+ V N+ I+IT+ I + ++ + Sbjct: 228 AMDIGSVVELNQLANDSLEVLVDDKVIAKGEVVIVDGNFGIQITE-IAPKKDRIEQLM 284 >gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein [Tepidanaerobacter sp. Re1] gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Tepidanaerobacter sp. Re1] Length = 376 Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 34/347 (9%), Positives = 90/347 (25%), Gaps = 65/347 (18%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQAS 87 + +G + + V I+ + ++ + Sbjct: 26 REEMDALGEIGNISIGTSATTLYSLLRNKVVITTPKVYITNIKKLKEAYPIPFISIEVSY 85 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + + + ++G + + + + + + + L+ Sbjct: 86 TKGLNGSTLMIMKEDDAKIIADLMMGGDGSNVDVELDDIRMSAVGEAMNQMMGSAATSLS 145 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN--MNMTIENVASSFVLI-IPQE 204 + SP ++ +E + TI+ M + + L+ IP Sbjct: 146 IMLKKDINISPPRVTRINLATDSLKGYFDEDEDIVTISFKMEVGDFLKSEIMQLMPIPFA 205 Query: 205 TLL--------------------------------------------------KTTLISL 214 L Sbjct: 206 KSLVEQLYTLSLSETTTNTDSINNEKINEEPKQIHSEQTSVRNITEQEAVLTMPQKEPLK 265 Query: 215 SSQNKSENQSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 S+QN F + + + + + + T+K+++ + G Sbjct: 266 SAQNAEVTVKPVEFHTFKEEPTAAQSSSLNLILDVPLEVTVELGRTEKTIKEILEISSGT 325 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +I A + NGK + E+ + +N+ +RIT+ IN + Sbjct: 326 IIELDKMAGEPADILVNGKLVAKGEVVVIDENFGVRITEIINSVDRV 372 >gi|110680043|ref|YP_683050.1| hypothetical protein RD1_2838 [Roseobacter denitrificans OCh 114] gi|109456159|gb|ABG32364.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 382 Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 26/260 (10%), Positives = 74/260 (28%), Gaps = 12/260 (4%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L K+ + + + + + + ++ +++ + NLV Sbjct: 30 LAKVADDAFHMALAVIGVTQERCAAENLSDKIEDDSLLVLLD-GPAGVTGGAVIGANLVN 88 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS----AVLNQCISTTQESSPNLE 161 L++ P +R L+ + L + + +L + Sbjct: 89 ALVQQQTMGRV-LPPTSASRPLTETDAALCAPVLDALFIRANGLLETPEDKRVLPAFKFG 147 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 D L V + ++++ S+ LI+P + ++SE Sbjct: 148 ARADSQRLFALALEEPEYTVLKLTIDVSGGITQSTLSLILPLPKAVPER-----QSSESE 202 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-AN 280 + + + + + +L ++ L+ G + L Sbjct: 203 TADPGSPATLEKSVMAVTAELSAVLCRVRVSLSEMSRLRPGHTLSIPANAFESVELLSIE 262 Query: 281 GKEIYSCELGRVGKNYTIRI 300 G + +G++ + + Sbjct: 263 GARVARGSMGQIDGKRALML 282 >gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16] Length = 287 Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 94/284 (33%), Gaps = 25/284 (8%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + S +++ S+ + LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEEAWESLISTPYARVVISAIEKEESSIELLAPVVLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L + + + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKFNFTTINAEIA 131 Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 L K ++ I + +E + S ++++ + + Q + E +++ Sbjct: 132 KELPKKE-----DYAKMIVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEEKTKS 184 Query: 227 LIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + +N+ RI KK LKDVV++ IG V+ Sbjct: 185 ATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 244 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 245 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|254440956|ref|ZP_05054449.1| Surface presentation of antigens protein [Octadecabacter antarcticus 307] gi|198251034|gb|EDY75349.1| Surface presentation of antigens protein [Octadecabacter antarcticus 307] Length = 330 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 81/287 (28%), Gaps = 19/287 (6%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R D + + L + + + L + + + +I S Sbjct: 14 LTRAIPPADDAAPATPMRQMR-----RALGRAADKAVGLSASVLGIAEEDLDSEGLIESG 68 Query: 78 KENFVFSQASLSSWSS-NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 E +V S + L L+E R ++ V+ ++ Sbjct: 69 PEGWVVLGLRDGSSAGLTGLFLMDQPLRSALVEMQTMGCL-LPAADEQRRVTRVDAVMSV 127 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL--SNEFVTTINMNMTIENVA 194 +Q+ A L + + P D ID L+ + N I + M + Sbjct: 128 PFASQLLAELAEVGFGAADFEPTAYDIGPIDDLRTAGLVMLQGNYRCWRITIQMGGGDAQ 187 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 ++ + S ++ S +D + + Sbjct: 188 GEMLIAL--------RPKVPVSSLPVKDTS-VWSMALRSAVQDAPAELDAVLTRMTLPIH 238 Query: 255 DVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRI 300 + ++G V+ L+ G+ I + LG+V +R+ Sbjct: 239 KIEAFEVGHVLNLAGTTVGLVTLTGPGGEIISTARLGQVAGKRAVRV 285 >gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM 1740] gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes] Length = 289 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 84/255 (32%), Gaps = 26/255 (10%) Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 + + S L L + +LG E+ ++ + K Sbjct: 42 PMALIYLNTTGEGSGKIAFLVPPALGTALADLMLGGEGESREEMSEDDVDAT-----KEI 96 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + I ++ +S +E D+++ + L + F + ++ + S Sbjct: 97 ASNIFGAISTALSAQKELPKLNFAPEKADFVQGGSIDL-SSFEKIFTFSFSLNTIRSELY 155 Query: 199 LIIPQETL---LK---------------TTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 L + + ++ S + N SE + + + Sbjct: 156 LAVDSSFVKIFEPKSAPSASASSYSESGSSFGGSYSGAPNVNLSEPEMKNIGM-LLDVKL 214 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + RI KK LKDV+++ IG V+ + + K I E+ V N+ I+I Sbjct: 215 QVKVRIGQKKMLLKDVISMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDGNFGIQI 274 Query: 301 TDRINFDQKSLKNFL 315 T+ I ++ L+ Sbjct: 275 TE-IGTKRERLEQLR 288 >gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor obsidiansis OB47] gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor obsidiansis OB47] Length = 375 Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 42/350 (12%), Positives = 97/350 (27%), Gaps = 68/350 (19%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 + + +G + ++ V+I+ K+ + F Sbjct: 27 SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSVLKWDELPKEFPVPYVAIKVV 86 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + V + + ++G + E QL LS +++ + + S Sbjct: 87 YKEGLDGINLLILKKEDVEIIADLMMGGTGQVEFTEQLTELQLSAIQEA-MNQMVGSAST 145 Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201 L+ ++ + +P + + + + + I MTI + + S + +I Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKIAFRMTIGDLIDSQIMQLI 205 Query: 202 P---------------------------------------QETLLKTTLISLSSQNKSEN 222 P Q T S Q+ + Sbjct: 206 PVDFAKQLVDAMFKNTFNASAQAETSAKSHSETVKEETLKQPASQPTNKQKTSPQSYTPP 265 Query: 223 QSEDLIDPF------------ARKTYQLNVNIDTRIN---LKKTTLKD-------VVTLK 260 ++ + + NI+ ++ L ++ Sbjct: 266 PKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFS 325 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +N+ +RITD +N + Sbjct: 326 TGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375 >gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180] gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180] Length = 287 Score = 89.7 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 94/283 (33%), Gaps = 23/283 (8%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + + S + +++ S + +LV Sbjct: 14 STLEGLVGKALSVGLEKEVSSSEESFLKLISVPYARVKISAIEKEESPIELLAPVDLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125 Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLL------KTTLISLSSQNK 219 + E + + +E + S ++++ ++++ Sbjct: 126 TNAEIAKEIPKKEDYAKAMVFSFKMEAIKESQIILLTTAAFEGQFEKNHKEEKEEATKSA 185 Query: 220 SENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 186 TEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 245 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 246 PLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287 >gi|163731544|ref|ZP_02138991.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149] gi|161394998|gb|EDQ19320.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149] Length = 382 Score = 89.7 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 27/268 (10%), Positives = 74/268 (27%), Gaps = 12/268 (4%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L K+ D+ + + + + + +E+ + LV Sbjct: 30 LAKVADTAFDMALAVIGVTQERCAAEDLPEKIEEDSLLILLD-GPAGVTGGAVVGAALVN 88 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS----AVLNQCISTTQESSPNLE 161 L++ R L+ + L + + +L + Sbjct: 89 ALVQQQTMGRVLPPA-PNARPLTATDAALCAPVLDALFIRANGLLETPEDKQILPAFKFG 147 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 D L V + ++++ S+ L++P + ++ E Sbjct: 148 ARADSQRLFSLALEEPEYTVLKLTIDVSGGIAQSTLTLVLPIPKAVPERHN-----SEGE 202 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-AN 280 + + + + + + +L ++ L+ G + + Sbjct: 203 SAAPGSPATLEHSVMAVTAELSAVLCRVRVSLSEMSRLRPGDTLSIPSNAFDSVEVLSIE 262 Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQ 308 G I +G+V + ++ + DQ Sbjct: 263 GARIARGAMGQVDGKRALMLSQTSSSDQ 290 >gi|221209605|ref|ZP_03582586.1| bcscQ [Burkholderia multivorans CGD1] gi|221170293|gb|EEE02759.1| bcscQ [Burkholderia multivorans CGD1] Length = 441 Score = 89.7 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 75/292 (25%), Gaps = 21/292 (7%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 L P+ G D I ++L L + V++ + H Sbjct: 158 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 216 Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 F W + + + + A+ P + + Sbjct: 217 AS---PSALRFELRRADGAWRCHGALLFDAPDALAV----FFATAPAAPPDAAALYANLP 269 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +E + + + I Sbjct: 270 VPLAFELGRTALTAAELA-DVVAGDIIAIEHWRAHEQDLLCVAYVRAAPAWEITGRPAGN 328 Query: 192 NVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 + + +P L + ++ + R L V++ + Sbjct: 329 RLTVQRIREMP---LEPPRTDSASAAAPDTPPADAP------RSLDGLAVDLRFELPPTS 379 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 L ++VTL+ G VI H L ANG I + +L VG+ +R+ Sbjct: 380 MPLGELVTLQPGAVIELPHGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 431 >gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10] gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10] Length = 287 Score = 89.3 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 94/286 (32%), Gaps = 29/286 (10%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSF--KENFVFSQASLSSWSSNFFIGCSNNLVI 105 + + + + S +++ S+ + LV Sbjct: 14 STLEGLVGKTPSVGLEK-EVSNSEEAWGSLISAPYARVVISAIEKEESSIELLAPVVLVT 72 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 73 ALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FT 124 Query: 166 IDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224 + E I + +E + S ++++ + Q + E + Sbjct: 125 TINAEIAKELPKKEDYAKMIAFSFKMEALKESQIILLTTAAFEHQFEK--THQEEKEETT 182 Query: 225 EDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + K + +N+ RI KK LKDVV++ IG V+ Sbjct: 183 KSATEEVKTKDESLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287 >gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori SouthAfrica7] Length = 282 Score = 89.3 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 16/277 (5%) Query: 48 KIFKEKMDLDVDISY-TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + + + + +I + + S S S+ + LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSNDEEADLISAPYARVMISAIDKSE--SHIELLAPVGLVTA 71 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L + + + Sbjct: 72 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTTNAEIA 129 Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 L K + M + +L+ T S + +++ Sbjct: 130 KDLPKKE---DYTKAMVFSFKMEALKESQMILLVTSAFESQFETKKEPESAESATEETKT 186 Query: 227 LIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + +N+ RI KK LKDVV++ IG V+ + Sbjct: 187 HDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILV 246 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 247 DDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 282 >gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57] Length = 287 Score = 89.3 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 93/285 (32%), Gaps = 27/285 (9%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106 + + + S + S S+ + +LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEEAWESLISVPYARVMISAIEKEESSIELLAPVDLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ + L ++ +A I+ L QE P L + Sbjct: 74 LSDLMLGGEGASKEEMDDDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125 Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225 + E I + +E + S ++++ + + Q + E ++ Sbjct: 126 INAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEETTK 183 Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + +N+ RI KK LKDVV++ IG V+ Sbjct: 184 SATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287 >gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli 95/1000] gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli 95/1000] Length = 348 Score = 89.3 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 94/294 (31%), Gaps = 40/294 (13%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-SNFFIGCSNNLVITL 107 V I+ + G S++ + ++ S + + N + +T+ Sbjct: 58 SLSSISTKTVSITNITTTVGDVSNLHQMLSGKVIEAKVSYTGSANGNVYYFMDEKEALTI 117 Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167 + G L+ + ++ K +Q+ V + +++ + Sbjct: 118 ASLMTG--------QAETDLNDMVAQVLKEAFSQMIGVSDSALTSKFGGNFTNAPVETSI 169 Query: 168 YLKKNTNRLSNEFVTT---INMNMTIENVASSFVLIIPQ-ETLLKTTLISLSSQNKSENQ 223 + ++ ++++ I+N F +P + +L + S+ NK+ Sbjct: 170 LDDSASISITGPLAIVSGSLSIDGEIDNAPYIFAFELPVLQAILSNASKTTSNANKTSAS 229 Query: 224 SEDLIDPFAR---------------------------KTYQLNVNIDTRINLKKTTLKDV 256 S + + +N+ + T+KD+ Sbjct: 230 SNNNTQANDNGKQLGVQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIKDI 289 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + L G +I L NGK I E+ + +N+ +R+TD I+ + Sbjct: 290 LGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIISPMDRL 343 >gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41] gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus C3-41] Length = 407 Score = 89.3 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 34/309 (11%), Positives = 80/309 (25%), Gaps = 38/309 (12%) Query: 14 HPILLAR-LTGKLGD---KKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A + G G E S++ + + + VDIS + Sbjct: 121 DAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTID 180 Query: 67 SGKFS--HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 S + E+ + + S N +NL+ L Sbjct: 181 LMNISQNEGRENIPEDDLLVKVSFRLKIGNL---IDSNLMQLL----------------- 220 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR--LSNEFVT 182 K ++ + + + ++ + V Sbjct: 221 ------PLKFSQNIVKSLLGETESIEEPVAATIAPEAPPITAPPVQTQAPVMPPPAQPVY 274 Query: 183 TI-NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 M P + + N + + Sbjct: 275 QQPEATMQQPVYQEPQQFAQPARAAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIPLQ 334 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + K ++K+++ L G +I + N + I E+ + +N+ +RIT Sbjct: 335 VTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVRIT 394 Query: 302 DRINFDQKS 310 D ++ ++ Sbjct: 395 DVLSQAERL 403 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 68/227 (29%), Gaps = 5/227 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLD 57 +RG+++ S + + +G + + Sbjct: 15 LRGETLEDKNSGTEASSIDETNDLRVEDYLDSFAQDALGEVGNISFGSSATALSALLGQK 74 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASH 116 VDI+ S + + F +V Q + + + + + + +LG Sbjct: 75 VDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMNLLVIKQSDAAIIADLMLGGDG 134 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + ++ + + + ++ + + SP D +I + N Sbjct: 135 LNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTIDLMNISQNEGRENIP 194 Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSEN 222 ++ + ++ + I N + S+ + ++P + L E Sbjct: 195 EDDLLVKVSFRLKIGNLIDSNLMQLLPLKFSQNIVKSLLGETESIEE 241 >gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7] Length = 290 Score = 89.3 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 26/286 (9%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106 + + + S + + S + + LV Sbjct: 14 STLEGLVGKAPSVGLEKEISSSDESFLKLISTPYARVMLSAIEKEEGSIELLAPVVLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAITTSLKS-----QELLPKLN--FTT 125 Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK--------TTLISLSSQ 217 + E T + + +E + S ++++ + ++ S Sbjct: 126 INAEIAKELPKKEDYTKAVVFSFKMEAIKESQIILLTTAAFERQFEKTHKEEKEETIKST 185 Query: 218 NKSENQSEDLIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 ++ + + + +N+ RI KK LKDVV++ IG V+ Sbjct: 186 TEATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 245 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 246 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290 >gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1] gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1] Length = 410 Score = 89.3 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 37/311 (11%), Positives = 85/311 (27%), Gaps = 39/311 (12%) Query: 14 HPILLAR-LTGKLGD---KKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A + G G E S++ + + + VDIS + Sbjct: 121 DAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTID 180 Query: 67 SG--KFSHIIHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119 + E+ + + S SN ++++LLG + Sbjct: 181 LMNISQDEGRENIPEDDLLVKVSFRLRIGNLIDSNLMQLLPLKFSQNIVKSLLGETGVF- 239 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 E+ +A + V + +P E + E Sbjct: 240 -----------EEPVAATIAPEAPPVTPPPVQQQIPVAPPSEQPVYQQQSAPMQQPIYQE 288 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 P + + + N + Sbjct: 289 P-------------QQFAQPARPAQPAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIP 335 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K ++K+++ L G +I + N + I E+ + +N+ +R Sbjct: 336 LQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVR 395 Query: 300 ITDRINFDQKS 310 ITD ++ ++ Sbjct: 396 ITDVLSQAERL 406 Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 68/227 (29%), Gaps = 5/227 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLD 57 +RG+++ + + + +G + + Sbjct: 15 LRGETLGDKNNDTDASTNEEINEIRVEDYLDSFAQDALGEVGNISFGSSATALSALLGQK 74 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASH 116 VDI+ S + + F +V Q + + + + + + +LG Sbjct: 75 VDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMNLLVIKQSDAAIIADLMLGGDG 134 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + ++ + + + ++ + + SP D +I + N Sbjct: 135 LNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTIDLMNISQDEGRENIP 194 Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSEN 222 ++ + ++ + I N + S+ + ++P + L E Sbjct: 195 EDDLLVKVSFRLRIGNLIDSNLMQLLPLKFSQNIVKSLLGETGVFEE 241 >gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d] Length = 287 Score = 88.9 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 25/284 (8%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106 + + + S + S S+ + LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEEAWESLISVPYARVMISAIEKKESSIELVAPVVLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L + + + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKFNFTTTNAEIA 131 Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 L K ++ + + +E + S ++++ + + Q + E ++ Sbjct: 132 KELPKKE-----DYAKMMVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEETTKS 184 Query: 227 LIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + +N+ RI KK LKDVV++ IG V+ Sbjct: 185 AAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 244 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 245 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|15606467|ref|NP_213847.1| hypothetical protein aq_1238 [Aquifex aeolicus VF5] gi|2983683|gb|AAC07248.1| putative protein [Aquifex aeolicus VF5] Length = 182 Score = 88.9 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 61/195 (31%), Gaps = 13/195 (6%) Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169 +LG +L + S +E + + + + + + ++ D + + Sbjct: 1 MMLGGE---PYELEGKPFSRLEMSMLTKLSESFCSTFREVWNEF--FTRDVTDCELSENV 55 Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID 229 + ++ + + E + S L P L + + Sbjct: 56 YELDL---DDDHYVAELGVENETLKRSLFLAFPLYLLKEIKEELS-----MRKPDPKERE 107 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 ++ VN++ + +K L VV + G VI + + G+ + L Sbjct: 108 ELLSALLKVPVNLEVLLFKRKDKLNKVVNMGKGFVILTGKTPQEEVEVLVQGRLKFLGIL 167 Query: 290 GRVGKNYTIRITDRI 304 G ++I+ + Sbjct: 168 GEKNGKRAVKISKIL 182 >gi|313672896|ref|YP_004051007.1| flagellar motor switch protein flin [Calditerrivibrio nitroreducens DSM 19672] gi|312939652|gb|ADR18844.1| flagellar motor switch protein FliN [Calditerrivibrio nitroreducens DSM 19672] Length = 289 Score = 88.9 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 86/274 (31%), Gaps = 20/274 (7%) Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLG 113 S G+ + I + + + L+ + + +L Sbjct: 25 GKSFQFQVESVSEGELNDIALEYMGQTLINIKESLNGIDGGIL--IDTLTITGFADLMLM 82 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 S E + +L + + K I Q + +N + + L ++ Sbjct: 83 GSGEGVQELNDDLKDAI-----KELINQTISAMNIPFNDEFKKKVAFGVISVDTLLDTSS 137 Query: 174 NRLSNEFVTTINMNMTIENVASSF-------VLIIPQETLLKTTLISLSSQNKS---ENQ 223 N + I+ + +NV LI+ + S + + Q Sbjct: 138 YVG-NILIFDISGSFDGKNVKFKIFFSSKLKNLIMVESAEDDDFDFSPEVTAVNPMPKQQ 196 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 + V + RI K LKD+V+L G ++ + ++ N K Sbjct: 197 KTTYGGKNIDLLLDVEVPVSIRIGSTKMFLKDIVSLSPGNIVELDEYAEEPVVVMVNNKP 256 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 I E+ V + +RI + I+ +++ +K K Sbjct: 257 IAKGEVVIVDGYFGVRIKEIISKEER-IKKLRDK 289 >gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30] Length = 287 Score = 88.9 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 29/286 (10%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSF--KENFVFSQASLSSWSSNFFIGCSNNLVI 105 + + + + S +++ S+ + LV Sbjct: 14 STLEGLVGKAPSVGLEK-EVSHSEEAWGSLISAPYARVVISAIEKEESSIELLAPVVLVT 72 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 73 ALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FT 124 Query: 166 IDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224 + E T I + +E + S ++++ + + Q + E + Sbjct: 125 TINAEIAKELPKKEDYTKMIAFSFKMEALKESQIILLTTVAFERQFEK--THQEEKEETT 182 Query: 225 EDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + +N+ RI KK LKDVV++ IG V+ Sbjct: 183 KSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287 >gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826] gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826] Length = 284 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 105/292 (35%), Gaps = 20/292 (6%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENFVFSQASLSS-W 91 +++ ++ L + +I + +F + K V + +LS Sbjct: 1 MTNEFFNIFSNELKATIEGLTGRTPEIG----ERNEFDAPAQNGIKPPVVMASVTLSGDI 56 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 ++ I C+ L+ + E ++G N +L + E AK + + + + + Sbjct: 57 NAKAEIACTPVLISAVSEWMMG----EEEISKNENLGSDELDAAKEIFSNLFSAFSTSLG 112 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL---LK 208 + + ++++L +N++ + F N+ IE++ + + Sbjct: 113 AQKGMPKISFEVINVNFLDENSSLDFSVFEKLFLFNIKIEDLNEHVAFVCDHTLMRFFEP 172 Query: 209 TT----LISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + ++ + E + + + + RI K+ LKDV+T+ IG Sbjct: 173 AKSEPVDAAKAAAAPHALKGEFSAEEMRNIGLIMDVRLPMRVRIGSKRMLLKDVLTMDIG 232 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 VI + K I E+ + N+ I+IT I ++ L+ Sbjct: 233 SVIELNQLANDPLEILIGDKVIALGEVVIIDGNFGIQITQ-IGSKRERLQQL 283 >gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51] Length = 287 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 93/285 (32%), Gaps = 27/285 (9%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + S +++ S+ + LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSHSEEAWGSLISVPYARVVISAIEKEESSIELLAPVVLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125 Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225 + E I + +E + S ++++ + Q + E +++ Sbjct: 126 INAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFEHQFEK--THQEEKEEKTK 183 Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + +N+ RI KK LKDVV++ IG V+ Sbjct: 184 SATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38] gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38] Length = 287 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 92/282 (32%), Gaps = 21/282 (7%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + S + +++ S+ + +LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEESFLKLISVPYARVKISAIEKEESSIELLAPVDLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLNFTTTN 127 Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL-----KTTLISLSSQNKSE 221 + K + + + + +E + S ++++ + + Sbjct: 128 AEIAKELPKKEDYTKAMV-FSFKMEAIKESQIILLTTAAFEGQFEKTHKEEKEETTQSAT 186 Query: 222 NQSEDLIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + + + +N+ RI KK LKDVV++ IG V+ Sbjct: 187 EEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDP 246 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 247 LEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287 >gi|307718612|ref|YP_003874144.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM 6192] gi|306532337|gb|ADN01871.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM 6192] gi|315186375|gb|EFU20135.1| flagellar motor switch protein FliN [Spirochaeta thermophila DSM 6578] Length = 350 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 35/322 (10%), Positives = 87/322 (27%), Gaps = 47/322 (14%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + +L V++ ++ + I E V Sbjct: 33 SPEELRKFRALLQNTVASQAANLSMLTGKQVEVQPPEVKAVQAETFIRGLPEQVVKVDIP 92 Query: 88 L-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + V TL+ LL N L+ + ++Q++ + Sbjct: 93 FTEGTRAAHGYVLDRE-VSTLIAGLLMGQ-------ENVELTEAAVSALQEGLSQMNGPV 144 Query: 147 NQCISTTQESSPNLEDFYDIDYLKK-----NTNRLSNEFVTTINMN----MTIENVASSF 197 + + ++ + ++ E+ I+ + +V Sbjct: 145 VTSLGDVSGMTILTAPAQGAEFSRDQLNLDVPEVVTAEYPVVIDGVGHKVIEFFDVPFVR 204 Query: 198 VLIIP--QETLLKTTLISLSSQNKSENQSEDL---------------------------I 228 L+ P S S+Q + QS+ Sbjct: 205 SLVNPSRPSPSQPANQASTSAQGATMAQSQGQPTVWGPGAPQVQQVQFPSFPEGALGPEQ 264 Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 + + + + K +K+++ + G +I + N K I E Sbjct: 265 QANISLLMDVYMELTVELGRTKKMVKEILAMGEGTIIELDKLAGEPVDILVNHKLIARGE 324 Query: 289 LGRVGKNYTIRITDRINFDQKS 310 + + +N+ +R+T+ I+ ++ Sbjct: 325 VVVIDENFGVRVTEIISPLERL 346 >gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A] Length = 287 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 94/285 (32%), Gaps = 27/285 (9%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + S +++ ++ + LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEEAWGSLISVPYARVVISAIEKEENSIELLAPVVLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125 Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225 + E I + +E + S ++++ + + Q + E +++ Sbjct: 126 INAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEEKTK 183 Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + +N+ RI KK LKDVV++ IG V+ Sbjct: 184 STTEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|310814876|ref|YP_003962840.1| possible flagellar switch protein FliM [Ketogulonicigenium vulgare Y25] gi|308753611|gb|ADO41540.1| possible flagellar switch protein FliM [Ketogulonicigenium vulgare Y25] Length = 340 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/292 (10%), Positives = 80/292 (27%), Gaps = 29/292 (9%) Query: 39 GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98 + ++ + E L ++ G I+ + + + + Sbjct: 24 QRVLRQSFARALTEVGGLRATLALPDVGEGVLDDILPALPDGMILFSLVCDG-DIVGLMA 82 Query: 99 CSNNLVITLLENLLGASH-----------ETIPQLYNRSLSTVEKKLAKRTIAQISAVL- 146 L + ++E + R ++V++ L + + L Sbjct: 83 FDAQLRMAVVEAQTLGEPYHASMPEPRGEPYHASMPERPRTSVDEVLCQPVADRCITDLI 142 Query: 147 NQCIST------TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVL 199 + ++ Q + + LS+ + + + I A S VL Sbjct: 143 AEALAAPTSGWSVQAWVEGVVCDRPFSGGRDAAFALSHGAYRQMRIGVGISAERAGSLVL 202 Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--------LIDPFARKTYQLNVNIDTRINLKKT 251 ++P E + ++ + R V++ ++ + Sbjct: 203 LLPVEGARAAVAQRRKLAEDAPARAVEASRSRHAGWSLSINRNVMGAAVDLQAVLHRMRL 262 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302 L + G V+ + + + +LG+ G IR+ + Sbjct: 263 PLSQIEGWAAGDVVMMPGASLAAVRLVGVADTPVGTGQLGKAGGMRAIRMKE 314 >gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88] gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88] Length = 416 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 40/354 (11%), Positives = 99/354 (27%), Gaps = 75/354 (21%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + + V+I+ + + + ++F+ V S Sbjct: 57 KDLLGEIGNISMGSASTALSNIIKQQVNITTPVVSATTLNKLKNTFEVPNIVLEVKYTSG 116 Query: 91 WSSNFFIGCSNNLVITLLENLLGASH-----------------ETIPQLYNRSLSTVEKK 133 + + ++G E + Q+ S +++ Sbjct: 117 ILGENLLVMKITDAAVVANLMMGGDGIVKDVTSLSEIEVSAVSEAMNQMIGSSATSMATM 176 Query: 134 LAKRT-----IAQISAVLNQCISTTQE---------SSPNLEDFYDIDYLKKNTNRLSNE 179 L + I++I L +S + N+ D ++ ++ + Sbjct: 177 LGREVNISPPISKIWDDLTSPLSENIDENETIIKVSFKLNIGTLVDSQIMQLLPMEMAKK 236 Query: 180 FVTTINMNMTIENVASSFVLIIPQETL--------------------------------- 206 V + E + + IPQ Sbjct: 237 IVAIMMGEDIQEEIGEEVMPEIPQVEETQHDLDITGGEELSKTQVEMQREQATYTNESPT 296 Query: 207 ----------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + Q + + + + ++I + K +K++ Sbjct: 297 YHRETPRVQEKPIEVQEAIFQPLQQTSKGEELPRNIDLIMDVPLDISVVLGRTKLNIKEI 356 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + L G +I + + NGK + E+ + +N+ +RITD +N +K Sbjct: 357 LNLGTGSLIELDKLAEEPVEILVNGKPVAFGEVVVIDENFGVRITDIVNNVEKI 410 >gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27] gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27] Length = 287 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 92/282 (32%), Gaps = 21/282 (7%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + S + +++ S + +LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEESFLKLISAPYARVKISAIEKEESLIELLAPVDLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L + + + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTTNAEIA 131 Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK-----TTLISLSSQNKSE 221 L K ++ + + +E + S ++++ E + + + Sbjct: 132 KELPKKE-----DYAKAMVFSFKMEAIKESQIILLTTEAFERQFEKTHKEEKEETTQSAT 186 Query: 222 NQSEDLIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + + + +N+ RI KK LKDVV++ IG V+ Sbjct: 187 EEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDP 246 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 247 LEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100] gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100] Length = 279 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 16/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 S V + S+++ + S L+ + E ++G + N K+ Sbjct: 39 DSMTPPLVSATFSVNNEMKIKILA-SAVLMSAIGEWMMGEEEISKNSELNEDEMDAAKEA 97 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 + I+ S L + +LE+ + + F N+ I ++ Sbjct: 98 IQNIISAFSTTLG-AQKEIPKMEFSLENCEFV-----ADSLELGGFHKLYLYNVKIADLE 151 Query: 195 SSFVL--------IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 L I+ + L + S + + + + I RI Sbjct: 152 EKISLVFDEKIYKILTKTDLEEIVAPSEDHTQDHKALANVEELRNIGLIMDVRLPIRVRI 211 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 KK LKDV+T+ IG VI + K+I E+ V N+ ++IT+ I Sbjct: 212 GSKKMLLKDVLTMDIGSVIELDQLANDPLEILIGDKKIAYGEVVIVDGNFGVQITE-IGS 270 Query: 307 DQKSLKNFL 315 ++ L+ Sbjct: 271 KKERLEQLR 279 >gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1] gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1] Length = 401 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 76/291 (26%), Gaps = 38/291 (13%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHSFKENFVFSQAS 87 + + ++ VDIS + + + ++ S Sbjct: 139 QVSAVQEAMNQ-MMGSAATSMSTVFSKKVDISPPRVDMLYLPEGEGADAIPHDDLLTKIS 197 Query: 88 LSS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142 S SN L++ L + + ++L Sbjct: 198 FSLKVGNLIDSNIMQLLPLGFAKQLVDELTNNNDASSTNSDIMEQGASHQEL-------- 249 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202 + + P+ + E + + Sbjct: 250 -----EPVQRVSPVQPSYSQQDTYRDN--TAQHVPQEKTQSQHFGNN------------- 289 Query: 203 QETLLKTTLISLSSQN-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 + + S N + + S+ + +N+ + ++KD++ L Sbjct: 290 KNVEQPVQVQPASFTNFEQPSMSKPESKNL-DMLLDIPLNVTVELGRTNRSVKDILELSS 348 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G +I + N + I E+ + +N+ +RITD ++ + K Sbjct: 349 GSIIELDKLAGEPVDVLVNSRLIAKGEVVVIDENFGVRITDIVSQSDRLKK 399 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 19/192 (9%), Positives = 60/192 (31%), Gaps = 2/192 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ + S I F Sbjct: 43 QDTLGEIGNISFGSSATALSTLLNQKVEITTPKVSIQERSRIEEDFPHPYVAIQVQYTEG 102 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 +S + + + + +LG + ++ + + + ++ Sbjct: 103 FSGANLLVIKQDDAAIIADLMLGGDGLNPSGDLGEIQVSAVQEAMNQMMGSAATSMSTVF 162 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 S + SP D + + ++ +T I+ ++ + N + S+ + ++P + Sbjct: 163 SKKVDISPPRVDMLYLPEGEGADAIPHDDLLTKISFSLKVGNLIDSNIMQLLPLGFAKQL 222 Query: 210 TLISLSSQNKSE 221 ++ + S Sbjct: 223 VDELTNNNDASS 234 >gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905] gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905] Length = 407 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 34/309 (11%), Positives = 81/309 (26%), Gaps = 38/309 (12%) Query: 14 HPILLAR-LTGKLGD---KKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A + G G E S++ + + + VDIS + Sbjct: 121 DAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTID 180 Query: 67 SGKFS--HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 S + E+ + + S N +NL+ L Sbjct: 181 LMNISQNEGRENIPEDDLLVKVSFRLRIGNL---IDSNLMQLL----------------- 220 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR--LSNEFVT 182 K ++ + + + +++ + V Sbjct: 221 ------PLKFSQNIVKSLLGETESIEEPVAATIAPEAPPIAAPPVQQQAPVMPPPAQPVY 274 Query: 183 TI-NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 M P + + N + + Sbjct: 275 QQPEATMQQPVYQEPQQFAQPARPAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIPLQ 334 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + K ++K+++ L G +I + N + I E+ + +N+ +RIT Sbjct: 335 VTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVRIT 394 Query: 302 DRINFDQKS 310 D ++ ++ Sbjct: 395 DVLSQAERL 403 Score = 72.7 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 68/227 (29%), Gaps = 5/227 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLD 57 +RG+++ S + + +G + + Sbjct: 15 LRGETLEDKNSGTEASSIDETNDIRVEDYLDSFAQDALGEVGNISFGSSATALSALLGQK 74 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASH 116 VDI+ S + + F +V Q + + + + + + +LG Sbjct: 75 VDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMNLLVIKQSDAAIIADLMLGGDG 134 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + ++ + + + ++ + + SP D +I + N Sbjct: 135 LNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTIDLMNISQNEGRENIP 194 Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSEN 222 ++ + ++ + I N + S+ + ++P + L E Sbjct: 195 EDDLLVKVSFRLRIGNLIDSNLMQLLPLKFSQNIVKSLLGETESIEE 241 >gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32] Length = 287 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 24/228 (10%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 LV L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 70 LVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKL-N 122 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN 222 F I+ ++ I + +E + S ++++ + Q + E Sbjct: 123 FTTINAEIAKELPKKKDYAKMIVFSFKMEALKESQIILLTTVAFEHQFEK--THQEEKEE 180 Query: 223 QSEDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 +++ + + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 KTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287 >gi|207110176|ref|ZP_03244338.1| flagellar motor switch protein FliM [Helicobacter pylori HPKX_438_CA4C1] Length = 125 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 2/125 (1%) Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARK 234 NE + + + I + + P ++ S N + Sbjct: 1 QNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQAL 60 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++V++ + + +LK+++ L +G I + + K+ Y +G G Sbjct: 61 LSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGY 120 Query: 295 NYTIR 299 TI+ Sbjct: 121 RKTIQ 125 >gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs] gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alkaliphilus oremlandii OhILAs] Length = 385 Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 36/352 (10%), Positives = 94/352 (26%), Gaps = 69/352 (19%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88 + +G + + V I+ Q + + +V Sbjct: 32 EEKDAIGEIGNISMGTAATTLSTLLGQKVTITTPRVQVLTIEELSKKYPLPYVAVDVKYK 91 Query: 89 SSWSSNFFIGCSNNLVIT----------------LLENLLGASHETIPQLYNRSLSTVEK 132 + + V L E L A E + Q+ S +++ + Sbjct: 92 EGLEGTNLLILKEDDVSIITDLMMGGNGEVGAVELTELHLSAIGEAMNQMVGSSATSLSE 151 Query: 133 KLAKRT-------------IAQISAVLNQCISTTQESSPNLEDFYDI--DYLKKNTNRLS 177 +K+ + + + + S + I + ++ + Sbjct: 152 IFSKKIDISPPDAFLLNLATDNLLELFKDNSQSLVQISFRMVIGELIDSEIMQLMPINFA 211 Query: 178 NEFVTTINMNMTIENVASSFV----------------LIIPQETL--------------- 206 E + + NM + + P+E Sbjct: 212 KEIIGGLFDNMAKGQEDKTVNDRNNTVPSNVKPAQKDTMHPREMSYDTPNYDHRANFSNE 271 Query: 207 ------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 + + Q ++ + ++ + + I + + +++ Sbjct: 272 AAATRNEPVNIRPVQFQAFDDDSVKGVMPENISLIQDVPLKITVELGRTVKKISEILEFG 331 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G +I + NG+ + + E+ + +NY IR+TD +N ++ K Sbjct: 332 PGTIIELDKLVGEPLDILVNGQYVANGEVVVIDENYGIRVTDIVNPAKRLSK 383 >gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori HPKX_438_AG0C1] Length = 290 Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 14/280 (5%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + S + +++ S+ + LV Sbjct: 14 STLEGLVGKAPSVGLEKEISSSDESFLKLISAPYARVKISAIEKEESSIELLAPVVLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ----------CISTTQES 156 L + +LG + ++ N L ++ +A I+ L I+ Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQELLPKLNFTTINAEIAK 132 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216 ++ Y + E + E+ +E T + Sbjct: 133 ELPKKEDYAKAMVFSFKMEAIKESQIILLTTTAFEHQFEKTHQEEKEEKEETTQSTAEEI 192 Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + I + + +N+ RI KK LKDVV++ IG V+ Sbjct: 193 KTHDASLENIEIRNISM-LLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLE 251 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 252 ILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 290 >gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514] gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X561] gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein [Thermoanaerobacter sp. X513] gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514] gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X561] gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X513] Length = 375 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/343 (10%), Positives = 95/343 (27%), Gaps = 56/343 (16%) Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV- 82 + + I +G + + V I+ + + F +V Sbjct: 29 GKELTEEEQDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNIPYVG 88 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENL----------------LGASHETIPQLYNRS 126 + + V+ + + + L A E + Q+ + Sbjct: 89 VEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEGKIEEGEITELHLSAIGEAMNQMIGSA 148 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN--RLSNEFVTTI 184 +++ L K + + + + + + K + +E + + Sbjct: 149 ATSLSTLLNKTINISPPKAFIVDFTASMPTDISFPEGDVVKIAFKMEVGEIIDSEIMQLL 208 Query: 185 NM-------------------------------------NMTIENVASSFVLIIPQETLL 207 N+ + S+ + ++ + Sbjct: 209 PFDFAKELVHSVLSKNEEKSPQATSQEESSSAIIESDEKNVETGSNISTRDKVTKKKQKV 268 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + S ++ + + I + K +KD++ L G +I Sbjct: 269 NVSPVVFQSFDEEPTSKSKEDKENLELILDVPLTITVELGKTKKLIKDILELSEGSIIEL 328 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + ANGK I E+ + +N+ +RITD ++ ++ Sbjct: 329 DKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHQSKRI 371 >gi|260544318|ref|ZP_05820139.1| flagellar motor switch protein FliM [Brucella abortus NCTC 8038] gi|260757052|ref|ZP_05869400.1| flagellar motor switch protein FliM [Brucella abortus bv. 6 str. 870] gi|260759577|ref|ZP_05871925.1| flagellar motor switch protein FliM [Brucella abortus bv. 4 str. 292] gi|260762821|ref|ZP_05875153.1| flagellar motor switch protein FliM [Brucella abortus bv. 2 str. 86/8/59] gi|260882862|ref|ZP_05894476.1| flagellar motor switch protein FliM [Brucella abortus bv. 9 str. C68] gi|261215633|ref|ZP_05929914.1| flagellar motor switch protein FliM [Brucella abortus bv. 3 str. Tulya] gi|260097589|gb|EEW81463.1| flagellar motor switch protein FliM [Brucella abortus NCTC 8038] gi|260669895|gb|EEX56835.1| flagellar motor switch protein FliM [Brucella abortus bv. 4 str. 292] gi|260673242|gb|EEX60063.1| flagellar motor switch protein FliM [Brucella abortus bv. 2 str. 86/8/59] gi|260677160|gb|EEX63981.1| flagellar motor switch protein FliM [Brucella abortus bv. 6 str. 870] gi|260872390|gb|EEX79459.1| flagellar motor switch protein FliM [Brucella abortus bv. 9 str. C68] gi|260917240|gb|EEX84101.1| flagellar motor switch protein FliM [Brucella abortus bv. 3 str. Tulya] Length = 233 Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 70/211 (33%), Gaps = 4/211 (1%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H + L R G GD ++ ++ F + K+ D S Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +S + F + + + W + ++ LV +++E + GA P + Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADH 124 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 VE+K+A ++ L++ +T+ P ID + + T Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS 216 + +T L++P+ T + + Sbjct: 184 IAVTAAGKTGQMHLLLPRSTQKRCRMQLPPF 214 >gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83] Length = 287 Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 29/286 (10%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSF--KENFVFSQASLSSWSSNFFIGCSNNLVI 105 + + + + S +++ S+ + LV Sbjct: 14 STLEGLVGKAPSVGLEK-EVSNSEEAWGSLISAPYARVVISAIEKEESSIELLTPVVLVT 72 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165 L + +LG + ++ N L ++ + I+ L QE P L + Sbjct: 73 ALSDLMLGGEGASKEEMDNDDLDAFKE-MTSNIFGAIATSLKS-----QELLPKLN--FT 124 Query: 166 IDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224 + E I + +E + S ++++ + Q + E ++ Sbjct: 125 TINAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTVAFEHQFEK--THQEEKEEKT 182 Query: 225 EDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + +N+ RI KK LKDVV++ IG V+ Sbjct: 183 KSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|254510732|ref|ZP_05122799.1| Surface presentation of antigens protein [Rhodobacteraceae bacterium KLH11] gi|221534443|gb|EEE37431.1| Surface presentation of antigens protein [Rhodobacteraceae bacterium KLH11] Length = 376 Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 34/293 (11%), Positives = 85/293 (29%), Gaps = 16/293 (5%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 L +L+ T + +L + + M L + + + Sbjct: 17 ALARKLSAGQSGADTPRSVLRALRLGLARAAGEG----MGLALSVIGARQAVRAQEDLGE 72 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 K+ ++ + V +++ A R + + + Sbjct: 73 RLKDGWLLLLFTSDQ-GGVAAACLDPGCVSAIVQQQTIAMV-IPDPPAERPFTDTDAAMV 130 Query: 136 KRTIAQISAVLNQCISTTQESSPN--LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 + + + + + + E + + L +E ++ + + Sbjct: 131 APLVEDTLGRALKLVESPADMTSLSGFEYASRAEDQRSLILALVDEAYRVFDLTVELAGG 190 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 A + I LL +S Q QS +D A + ++T I+ L Sbjct: 191 ARQGEVCI----LLPERPLSDGEQATDTAQSGLSLDQ-ASGVMRAE--LNTVISRMSVPL 243 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYS-CELGRVGKNYTIRITDRIN 305 + L +G ++P + + + + LG+ IRI + ++ Sbjct: 244 TALSNLSVGDILPLQGARVDRVEVLSIDRARATVGRLGQCSGMRAIRINETLS 296 >gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori Lithuania75] Length = 287 Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 89/285 (31%), Gaps = 27/285 (9%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN---FVFSQASLSSWSSNFFIGCSNNLV 104 + + + S + S S LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSHSEEAWESLISTPYARVMVSVIEKEESSIELLAPVD--LV 71 Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 72 TALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--F 123 Query: 165 DIDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK------TTLISLSSQ 217 + E + + +E + S ++++ + ++Q Sbjct: 124 TTINAEIAKELPKKEDYAKAMVFSFKMEAITESQIILLTTAAFERQFEKTHKEEKEETTQ 183 Query: 218 NKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 184 GAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287 >gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4] gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4] Length = 287 Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 24/228 (10%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 LV L + +LG + ++ N L ++ +A I+ L + + + Sbjct: 70 LVTALSDLMLGGEGASKEEMNNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTTN 127 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN 222 L K ++ + + +E + S ++++ + + Q + E Sbjct: 128 AEIAKELPKKE-----DYAKMMVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEE 180 Query: 223 QSEDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 ++ + + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 TTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287 >gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2] gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2] Length = 432 Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 35/316 (11%), Positives = 79/316 (25%), Gaps = 41/316 (12%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHS 76 A L G++ E ++ +G VDIS + Sbjct: 134 AELMGEIQLSAVQEAMNQMMG-----SAATSMSTIFGKKVDISPPAIDILDLPQGEGADR 188 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S + +N ++ LL G S + L + Sbjct: 189 VPADDMLIRISFRLKIGSL---IDSN-IMQLLPLEFGKSLVNELLNPGQDLPADSAVSGE 244 Query: 137 RTIAQISAVLNQC---ISTTQESS-----------------PNLEDFYDIDYLKKNTNRL 176 AQ + E P Sbjct: 245 NQAAQGQPDYQESQLPFDKKPEVQTGGLDKSYTQTGFSGEQPAYSQPVMNQASSPQNYIP 304 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 + + ++ + + + +D Sbjct: 305 AQNQAQ----------QSGPQHFGGSYANGVQPNVQPAAFSSFEPYHMQDHETKNLDMLL 354 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + + K ++K+++ L G +I + N + I E+ + +N+ Sbjct: 355 DIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNNRLIAQGEVVVIDENF 414 Query: 297 TIRITDRINFDQKSLK 312 +R+TD I+ + K Sbjct: 415 GVRVTDIISQSDRIKK 430 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 16/177 (9%), Positives = 55/177 (31%), Gaps = 2/177 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 + +G + ++ VDI+ + + F Sbjct: 41 SHMEQDALGEIGNISFGSSATALSTLLNQKVDITTPAVSVVLRQKLAEEFPHPYVAIQVN 100 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + + + + + +LG +L + ++ + + + + Sbjct: 101 YTEGFFGSNLLVIQQSDAAIIADLMLGGDGTNPAELMGEIQLSAVQEAMNQMMGSAATSM 160 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP 202 + + SP D D+ + +++ + I+ + I + + S+ + ++P Sbjct: 161 STIFGKKVDISPPAIDILDLPQGEGADRVPADDMLIRISFRLKIGSLIDSNIMQLLP 217 >gi|159043958|ref|YP_001532752.1| hypothetical protein Dshi_1409 [Dinoroseobacter shibae DFL 12] gi|157911718|gb|ABV93151.1| hypothetical protein Dshi_1409 [Dinoroseobacter shibae DFL 12] Length = 349 Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 71/247 (28%), Gaps = 9/247 (3%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + + + + + + F S+ + L+E + Sbjct: 61 SVQVVDTDGVAGLAEQMADVALLIPCNAPD-GAEGFAALSSGGMTGLVEKTTTGRI-SPG 118 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQ--CISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 + R S++++ L + I + + ++ + + + + Sbjct: 119 EPEPRDASSIDQLLCRGFIERFFEAWGELLAGTSHEAWLAGYAPTDGMMQPDVLSVSAPD 178 Query: 179 EFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 + + +F + +P + L + + + + + Sbjct: 179 IPYRLYLITAQFDGLREVAFSVALPVS---RPRPADLVETGDAARSTGEWAKDWRAAVLE 235 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNY 296 +D + + +L +V G + + L NG + + LG+ Sbjct: 236 SPAELDAVLCKLELSLDEVRRWAPGDRVSIPASALSSVSLGRRNGPSVATARLGQARGVR 295 Query: 297 TIRITDR 303 +R+ + Sbjct: 296 ALRLNEI 302 >gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium modesticaldum Ice1] gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium modesticaldum Ice1] Length = 375 Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + T++D++ L G VI + NGK I E+ + + Sbjct: 296 IMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAKGEVVVIDE 355 Query: 295 NYTIRITDRINFDQKS 310 N+ +RITD ++ ++ Sbjct: 356 NFGVRITDIVSPIERI 371 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 4/166 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLLENLL 112 M VDI+ + + + FV + N + + V +++ ++ Sbjct: 1 MGKKVDITTPRVYVTTKAALQKDYPSPFVVVDVTYTAGLEGNNVLIIRESDVAIIVDLMM 60 Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 G + P N + + + + + + + + SP + ID+ + Sbjct: 61 GGDGMSPPAELNEIHFSAISEAMNQMMGSAATSMATMLQKKIDISPPM--LNTIDFASEK 118 Query: 173 TNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQ 217 R + V ++ M IE V S + I P + + Sbjct: 119 LPRPDVDPVIKVSFRMVIEGLVDSELMQIYPIPFAKQLVSGLMGDM 164 >gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171] Length = 502 Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 33/315 (10%), Positives = 95/315 (30%), Gaps = 26/315 (8%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68 L RL G +K +++ ++ + + + ++ V + + + Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248 Query: 69 KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + + S+ S N + + + ++ + L Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307 Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + ++L + + + +++ + T + SP +E D + + Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230 + + + + P L+ + N + ++ + Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKANTQEMEPEMPLPIEEKETLSE 427 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + V ++ K L+ ++ VI +L NG I L Sbjct: 428 MEAILEDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKGILV 487 Query: 291 RVGKNYTIRITDRIN 305 RV ++ I++T+ + Sbjct: 488 RVDDHFGIQMTELVR 502 >gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] Length = 354 Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 45/326 (13%), Positives = 87/326 (26%), Gaps = 56/326 (17%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSN 94 L +L+ K + + D++IS + + E VF S + N Sbjct: 20 EELIHLHAKAAGESLSSILKADIEISSPEITEITVKEVEYGILEPAVFVKSCLTSGVAGN 79 Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTT 153 + + L L+G P ++ + +L + + + + + T Sbjct: 80 TVMILRQRDMQAFLNELMGIDDLPDPDFEFDEVAMSAAAELMNQMVHASVEAMAEYLGNT 139 Query: 154 QE-SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT-- 209 E S L L I+ + I++ V S F+ I Sbjct: 140 MESSDCQLILSDGRQNLSPAIGEAPESKTIVIHYRVKIKDMVESEFMECISITAADSIYQ 199 Query: 210 --------------------------------------TLISLSSQNKSENQS------- 224 S S Sbjct: 200 EIGARREAEKRAEAEAKAMEESLFVKPVQQGAAPAAAGRESLQSGMESRTANSVTADTGH 259 Query: 225 --EDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + +N+ I + LKDV+ G V+ + + Sbjct: 260 AVYQASPSINGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIV 319 Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305 NG+ I E+ + N+ +RI++ +N Sbjct: 320 NGQLIARGEVVVIDDNFGVRISEIVN 345 >gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12] gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12] Length = 287 Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 23/283 (8%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + + S + +++ + + LV Sbjct: 14 STLEGLVGKALSVGLEKEISSSDESFLKLISAPYARVKISAIEKEEGSIELLAPVVLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125 Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK---------TTLISLSS 216 + E + + +E + S ++++ E + + + Sbjct: 126 INAEIAKEFPKKEDYAKAMVFSFKMEAIKESQIILLTTEAFERQFEKMHKEEKEETTEGA 185 Query: 217 QNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + L + R + +N+ RI KK LKDVV++ IG V+ Sbjct: 186 TEEVKAHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 245 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 246 PLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str. Sheeba] gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] Length = 283 Score = 86.6 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 77/230 (33%), Gaps = 28/230 (12%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 LV TL + +LG + ++ N L ++ +A I+ L QE P L Sbjct: 67 GLVTTLSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN 120 Query: 162 DFYDIDYLKKNTNRLSNE---FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 + + E + M + +L+ T ++ Sbjct: 121 --FTTTNAEIAKELPKKEDYAKAVVFSFKMEALKESQMILLV----TTDFINQFETKKEH 174 Query: 219 KSENQSEDLIDPFARK------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 E D + +N+ RI KK LKDVV++ IG V+ Sbjct: 175 NEEGTKVVREDKIQDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVE 234 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 235 LDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 283 >gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067] Length = 502 Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 33/315 (10%), Positives = 94/315 (29%), Gaps = 26/315 (8%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68 L RL G +K +++ ++ + + + ++ V + + + Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248 Query: 69 KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + + S+ S N + + + ++ + L Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307 Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + ++L + + + +++ + T + SP +E D + + Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230 + + + + P L+ + N + ++ + Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADMQEIEPEMPLPIEEKETLSE 427 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + V ++ K L+ ++ VI L NG I L Sbjct: 428 MEAILEDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILV 487 Query: 291 RVGKNYTIRITDRIN 305 RV ++ I++T+ + Sbjct: 488 RVDDHFGIQMTELVR 502 >gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] Length = 502 Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 33/315 (10%), Positives = 94/315 (29%), Gaps = 26/315 (8%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68 L RL G +K +++ ++ + + + ++ V + + + Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248 Query: 69 KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + + S+ S N + + + ++ + L Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307 Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + ++L + + + +++ + T + SP +E D + + Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230 + + + + P L+ + N + ++ + Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADTQEMKPEMPLPIEEKETLSE 427 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + V ++ K L+ ++ VI L NG I L Sbjct: 428 MEAILEAIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILV 487 Query: 291 RVGKNYTIRITDRIN 305 RV ++ I++T+ + Sbjct: 488 RVNDHFGIQMTELVR 502 >gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61] gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC52] gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC61] gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC52] Length = 393 Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 38/313 (12%), Positives = 84/313 (26%), Gaps = 44/313 (14%) Query: 14 HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A L G D E S++ + + VDIS + Sbjct: 109 DAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFGKRVDISPPTLH 168 Query: 67 SGKFSHI--IHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + + S S+ + L+ LLG+ E Sbjct: 169 LLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKELVAQLLGSPLEEP 228 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 S+ + + P E Y + N +E Sbjct: 229 GAAEVNLKSSADAR------------------------PFSEPQPVPTYAQANGGAAVSE 264 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 + + + + + + + + Sbjct: 265 AASRSTDEPPAGRADKERD-----GATARHIQTADFVEFDAPPLAATEARNL-ELLFDVP 318 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K ++++++ L G +I + N K I E+ + +N+ +R Sbjct: 319 LQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENFGVR 378 Query: 300 ITDRINFDQKSLK 312 ITD I+ + K Sbjct: 379 ITDIISQSDRLTK 391 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/201 (9%), Positives = 58/201 (28%), Gaps = 2/201 (0%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ S + + + F + Sbjct: 37 QDALGEIGNISFGSSATALSMLLNQKVEITTPSVSIIERTSVADEFPQPYVAIQVNYTEG 96 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + +LG + ++ + + + ++ Sbjct: 97 LLGTNLLVIKQQDAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVF 156 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D+ K +F+ ++ + I + SS + ++P + + Sbjct: 157 GKRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKEL 216 Query: 210 TLISLSSQNKSENQSEDLIDP 230 L S + +E + Sbjct: 217 VAQLLGSPLEEPGAAEVNLKS 237 >gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695] gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695] Length = 287 Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 94/283 (33%), Gaps = 23/283 (8%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + S + +++ S+ + LV + Sbjct: 14 STLEGLVGKAPSVGLEKEISSSDESFLKLISTPYARVVISAIEKEESSIELLAPVVLVTS 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125 Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLL---------KTTLISLSS 216 + E + + +E + S ++++ + + Sbjct: 126 INAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTAAFEGQFEKTHKEEKEETTEGV 185 Query: 217 QNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + L + R + +N+ RI KK LKDVV++ IG V+ Sbjct: 186 AEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 245 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 246 PLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|89070387|ref|ZP_01157694.1| possible flagellar switch protein FliM [Oceanicola granulosus HTCC2516] gi|89044034|gb|EAR50209.1| possible flagellar switch protein FliM [Oceanicola granulosus HTCC2516] Length = 381 Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 78/293 (26%), Gaps = 32/293 (10%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 LAR G+ ++ + + + V + S + ++ Sbjct: 2 LARKARVGGEAAASGVVTPARALRLA--FARAVERVAGAQVAVVAVSEAALVLDEVVARL 59 Query: 78 K-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 ++ V + A S L L+E + P R +S + L + Sbjct: 60 GTDDLVLALAGAEGVSG--LAALDPELRSALVECQTTGAVSPEPAPE-RPVSVADAALTR 116 Query: 137 RTIAQISAVLNQC--------ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 + L ++ L+ + + + + +++ Sbjct: 117 PVVDAFLEELLAAAAPTALAGWGEGVATAGRLDGARGA----GLSLAEAGYRLVALTVDL 172 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 ++ +P + + D FAR + ++ Sbjct: 173 GAGTREGRLLVALPA-------------REAPAPTASDWSGQFARAVQAAPAELRAVLHR 219 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRI 300 + L+ L GQV+P L A + LG+ IR+ Sbjct: 220 FELPLERAEALAPGQVLPLEGVTVASVRLEGAERALVGHARLGQSAGLKAIRL 272 >gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 502 Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 33/315 (10%), Positives = 94/315 (29%), Gaps = 26/315 (8%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68 L RL G +K +++ ++ + + + ++ V + + + Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248 Query: 69 KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + + S+ S N + + + ++ + L Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307 Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + ++L + + + +++ + T + SP +E D + + Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230 + + + + P L+ + N + ++ + Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADMQEIEPEMPLPIEEKETLSE 427 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + V ++ K L+ ++ VI L NG I L Sbjct: 428 MEAILEDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILV 487 Query: 291 RVGKNYTIRITDRIN 305 RV ++ I++T+ + Sbjct: 488 RVDDHFGIQMTELVR 502 >gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] Length = 393 Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 37/313 (11%), Positives = 85/313 (27%), Gaps = 44/313 (14%) Query: 14 HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A L G D E S++ + + VDIS + Sbjct: 109 DAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFGKRVDISPPTLH 168 Query: 67 SGKFSHI--IHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + + S S+ + L+ LLG+ E Sbjct: 169 LLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKELVAQLLGSPLEEP 228 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 S+ + + P E Y + N +E Sbjct: 229 GAAEVNLKSSADAR------------------------PFSEPQPVPTYAQANGGAAVSE 264 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 + + + + + + + + + Sbjct: 265 AASRSTDEPSAGRADKDRD-----GATARHIQTADFVEFDAPPLAATEARNL-ELLFDVP 318 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K ++++++ L G +I + N K I E+ + +N+ +R Sbjct: 319 LQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENFGVR 378 Query: 300 ITDRINFDQKSLK 312 ITD I+ + + Sbjct: 379 ITDIISQSDRLTR 391 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/201 (9%), Positives = 58/201 (28%), Gaps = 2/201 (0%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ S + + + F + Sbjct: 37 QDALGEIGNISFGSSATALSMLLNQKVEITTPSVSMIERTSVADEFPQPYVAIQVNYTEG 96 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + +LG + ++ + + + ++ Sbjct: 97 LLGTNLLVIKQKDAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVF 156 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D+ K +F+ ++ + I + SS + ++P + + Sbjct: 157 GKRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKEL 216 Query: 210 TLISLSSQNKSENQSEDLIDP 230 L S + +E + Sbjct: 217 VAQLLGSPLEEPGAAEVNLKS 237 >gi|258516873|ref|YP_003193095.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans DSM 771] gi|257780578|gb|ACV64472.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans DSM 771] Length = 331 Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 82/293 (27%), Gaps = 19/293 (6%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +G + + ++ V I K + SF ++ S Sbjct: 31 SHHQLDTIGEVGNISMGTAATTLSQILNQRVTIGNPRVIVCKQEEVFKSFATPYLLVYVS 90 Query: 88 L-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAV 145 + + + N V T+ +LG P + L + ++ + I + Sbjct: 91 FKEGLTGFNVLIITENEVATIANLMLGGDGNIPPVVELSELEISAAQEAMNQMIGSVCTA 150 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLIIPQ 203 + + +P T + + V + + I N+ + ++ Sbjct: 151 MTDMFGIPIDITPPTITMVHDIKNASLTPLPTEQPVVVVRFDTFISNILKTTIMQILSVD 210 Query: 204 ETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQL------------NVNIDTRINLK 249 + + + +K + + + VN+ + Sbjct: 211 AAQEEANYLLQKAGYMDKEAEIVANNANSDNDQVAVASKLPNLTAALSLPVNLTVVLGKT 270 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +T++++ L+IG+ + C + A + +L + I Sbjct: 271 LSTVEELARLEIGKKLTLPLSA-ECVEIYAGDTLVGKGKLIDQKGKMQVEINQ 322 >gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] Length = 360 Score = 86.2 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +N+ + T++D++ L G +I L NGK I E+ + + Sbjct: 280 LMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE 339 Query: 295 NYTIRITDRINFDQKSLK 312 N+ +R+TD IN + Sbjct: 340 NFGVRVTDIINPMDRLTN 357 >gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum DSM 6946] gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum DSM 6946] Length = 286 Score = 85.8 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 84/279 (30%), Gaps = 17/279 (6%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 + + + +S + + + + ++ + Sbjct: 14 STIEGLTGIAPQVELNKEEST--ESKLRLSPPLARLDVSVGGDMHGRMRVTVATSIATAI 71 Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167 + +LG ++ L ++ + ++ S L + ++E ID Sbjct: 72 GDMMLGGEGLEKEEMDAEDLDATKE-IVSNILSSFSRSLASQ-KNMPKLEFDIESVEYID 129 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 + E + N+ + + + +F + L++ + + + Sbjct: 130 ANSEIEF-RGYEKLFIYNLAIHMSHDTIAFAISSELTPLVEDMPRMDTPKESIPESALIE 188 Query: 228 IDPF-----------ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + I RI KK LKDV+++ IG VI Sbjct: 189 PKKVVPSMSPEEISNIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLE 248 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + K I E+ V N+ ++I + I ++ L+ Sbjct: 249 ILVGDKVIAMGEVVIVDGNFGVQIGE-IGTKRERLEKLR 286 >gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM 12563] gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM 12563] Length = 359 Score = 85.8 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +N+ + T++D++ L G +I L NGK I E+ + + Sbjct: 279 LMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE 338 Query: 295 NYTIRITDRINFDQKSLK 312 N+ +R+TD IN + Sbjct: 339 NFGVRVTDIINPMDRLTN 356 >gi|255262288|ref|ZP_05341630.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255104623|gb|EET47297.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 326 Score = 85.8 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 26/269 (9%), Positives = 79/269 (29%), Gaps = 25/269 (9%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + + + V + + E + + + + C Sbjct: 28 DVLARAMRRAADFVVGMPVLLKGGEASEVSLVELAEQLNEQD-LTMMLIGRDGARAIMTC 86 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN---------QCI 150 +V L+E T R ++ + L + Q+ ++ + Sbjct: 87 DGPMVSALIEMSTIGHVTT-ANSAARRMTRTDVALITPFLGQVLVEVSGGDADVPVTSLM 145 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 S E + L+ + + V +++ + + +L +P+ Sbjct: 146 SGYDEMTRVLDVCTVELIMPQVQ-----YHVYDLSLELGQGSKTGRVMLCLPKRASQDEK 200 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + +++ +++ L +D ++ L +V +G +I Sbjct: 201 I--------AQDTAKNWKASVEATVLDLPSQLDAVLHTVSMPLSEVRAFAVGDMIKMAAS 252 Query: 271 EKTCAILS-ANGKEIYSCELGRVGKNYTI 298 + + + I + LG+V + Sbjct: 253 SLKTVQVRGLDSQTITTARLGQVHGTRAL 281 >gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3] gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. C56-T3] Length = 393 Score = 85.8 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 37/313 (11%), Positives = 84/313 (26%), Gaps = 44/313 (14%) Query: 14 HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A L G D E S++ + + VDIS + Sbjct: 109 DAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFGKRVDISPPTLH 168 Query: 67 SGKFSHI--IHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + + S S+ + L+ LLG+ E Sbjct: 169 LLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKELVAQLLGSPLEEP 228 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 S+ + + P E Y + N +E Sbjct: 229 GAAEVNLKSSADAR------------------------PFSEPQPVPTYAQANGGAAVSE 264 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 + + + + + + + + Sbjct: 265 AASRSTDEPPAGRADKERD-----GATARHIQTADFVEFDAPPLAATEARNL-ELLFDVP 318 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K ++++++ L G +I + N K I E+ + +N+ +R Sbjct: 319 LQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENFGVR 378 Query: 300 ITDRINFDQKSLK 312 ITD I+ + + Sbjct: 379 ITDIISQSDRLTR 391 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/201 (9%), Positives = 58/201 (28%), Gaps = 2/201 (0%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ S + + + F + Sbjct: 37 QDALGEIGNISFGSSATALSMLLNQKVEITTPSVSIIERTSVADEFPQPYVAIQVNYTEG 96 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + +LG + ++ + + + ++ Sbjct: 97 LLGTNLLVIKQQDAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVF 156 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D+ K +F+ ++ + I + SS + ++P + + Sbjct: 157 GKRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKEL 216 Query: 210 TLISLSSQNKSENQSEDLIDP 230 L S + +E + Sbjct: 217 VAQLLGSPLEEPGAAEVNLKS 237 >gi|307720639|ref|YP_003891779.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] gi|306978732|gb|ADN08767.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] Length = 294 Score = 85.8 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 92/285 (32%), Gaps = 26/285 (9%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITL 107 + + + Q II + V + +S ++ I NL +L Sbjct: 15 TIEALIGTAPSLELKEEQELS---IISNIVPPIVLVKIKVSGDVDADAMIALPPNLAASL 71 Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167 + ++G + L ++ + IS L S ++E+ + Sbjct: 72 SDMMMGEEASDREDVSEDDLDAAKE-IVSNIFGAISNTL-SAQKELPVLSFSIENIELVG 129 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSF-------VLIIPQET------LLKTTLISL 214 + + + N+ + F ++ P +T + + + Sbjct: 130 DDDEVSLEAFSRMYV-YKFNLESVHSLLMFIIDEKLKNVLFPSDTSSESAEIEENRSTAA 188 Query: 215 SSQNKSENQSED---LIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 +S + S N ED + + + + RI K+ LKDV+ + IG VI Sbjct: 189 ASSHISSNCEEDITLSNEEMKNIALIMDVKLPVRVRIGKKRMLLKDVLNMDIGSVIELNQ 248 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + + E+ V N+ I++T I ++ L Sbjct: 249 LANDPLEILVDNHVVAQGEVVIVDGNFGIQVT-TIGTKKERLTQL 292 >gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori Gambia94/24] Length = 285 Score = 85.5 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 20/232 (8%) Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI------ 150 + +LV L + +LG + ++ N L ++ +A I+ L Sbjct: 62 LLAPADLVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQELLPKLN 120 Query: 151 ------STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 +E + + + K ++ V E F +E Sbjct: 121 FTTTNAEIAKELPKKEDYAKAMVFSFKMEAIKESQIVLLTT-----EAFEGQFEKTHKEE 175 Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 T + ++ + I + + +N+ RI KK LKDVV++ IG V Sbjct: 176 KEETTKSATEETKTHDASLENIEIRNISM-LLDVKLNVKVRIGQKKMILKDVVSMDIGSV 234 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 235 VELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 285 >gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulovorans 743B] gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B] gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulovorans 743B] Length = 400 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 1/103 (0%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + Q ++ L + + +NI + + ++KD+++L G +I Sbjct: 294 PVEVSKATFQPLRTADTKSLPNNI-DLIMDVPLNISVVLGKTRKSIKDILSLNNGSLIEL 352 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NGK+I E+ V +N+ +RIT ++ + + Sbjct: 353 DKLAEEPVEILVNGKKIAYGEVVVVDENFGVRITSIVSSEDRI 395 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 58/194 (29%), Gaps = 2/194 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + + ++ V+I+ + + F +S Sbjct: 36 KDLLGEIGNISMGSASTALSQIINQPVNITTPVVTVTTLEKLKNEFTIPNIALDIKYISG 95 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + ++G + + + ++ + I + + + Sbjct: 96 IKGENLLVMKTIDASVIANLMMGGDGKVENIELSELEVSAVQEAMNQMIGSAATSMATML 155 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 S SP ++ + E + + MTI + V S+ + I P ET Sbjct: 156 SREINISPPDSKIWNDSNDSLSETIDEKEDIIKVAFKMTIGDLVDSTIMQIYPLETSKNI 215 Query: 210 TLISLSSQNKSENQ 223 I + + +Q Sbjct: 216 CSIMMGEADDDIDQ 229 >gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681] gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681] Length = 436 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 31/302 (10%), Positives = 74/302 (24%), Gaps = 25/302 (8%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHSFKENFVFSQASL 88 I + ++ + V+IS + S + S Sbjct: 138 ISAVQEAMNQ-MMGSSATSMSTMFNRFVNISPPGIDILDPMHGDGVSSLPDEETLITVSF 196 Query: 89 SSWSS-----NFFIGCSNNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQI 142 N ++ L+ G E PQ + ++ A + + Sbjct: 197 RLLIGDLIDSTLMQLLPVNFAKKMVSILMNGGEDEEQPQASAQQVAATAAPEASQQASVP 256 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202 ++ +D + +P Sbjct: 257 QQPPAPAYQQPPAAAQAPQDAGYGQQPP----MYPQDPGYGQQGAPGYGTPGYGMPAGVP 312 Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFA------------RKTYQLNVNIDTRINLKK 250 + T + ++ N + + + + + Sbjct: 313 PQAPYGTPHHYGAVPGRNVNVQPVQFSNLQSGAFAQVDENNLNLLMDIPLRVTVELGRTQ 372 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +KD++ L G +I + N K I E+ + +N+ +R+TD ++ + Sbjct: 373 KQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVTDIVSQWDRI 432 Query: 311 LK 312 K Sbjct: 433 QK 434 Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 21/200 (10%), Positives = 60/200 (30%), Gaps = 2/200 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + + VDI+ S +F + + Sbjct: 41 QDALGEIGNITFGSAATALSTLLGQKVDITTPKVSIITRSEFETAFPKPHVAVHVNYVDG 100 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + +LG + + N + ++ + + + ++ Sbjct: 101 FEGINSLVIKKRDAQVIADLMLGGEGNPVDEELNEIHISAVQEAMNQMMGSSATSMSTMF 160 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D D + ++ E + T++ + I + + S+ + ++P K Sbjct: 161 NRFVNISPPGIDILDPMHGDGVSSLPDEETLITVSFRLLIGDLIDSTLMQLLPVNFAKKM 220 Query: 210 TLISLSSQNKSENQSEDLID 229 I ++ E Sbjct: 221 VSILMNGGEDEEQPQASAQQ 240 >gi|206563882|ref|YP_002234645.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092661|gb|AAK50139.1| BcscQ [Burkholderia cenocepacia] gi|198039922|emb|CAR55899.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 366 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 75/295 (25%), Gaps = 27/295 (9%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P+ G D I ++L L + + V + Sbjct: 83 IDPVAETEWLGDAADPAVPAVIRAALLADLCAPLAAVLQAATRQRVALLPPP-------D 135 Query: 73 IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 ++ + L W + + + + A+ + + Sbjct: 136 GAPAWDAAPAALRFELRRADAAWRCHGALLFDAPDALAV----FFATAPAALADARATYA 191 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 ++ L +E + + RL I Sbjct: 192 SLPVPLVFEIGRTELTTAELA-DVVGGDIIAIERWQAHEQNLLCVARLPAAPAWEITGRP 250 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + + + +P L T + + + + R L V++ + Sbjct: 251 SGNRLTVERIREMP---LEPTRTDSAPPTTHDAPPGDAP------RSLDGLAVDLRFELP 301 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 L ++ L+ G VI L ANG I + L VG+ +R+ Sbjct: 302 PTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 356 >gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51] gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 421 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 T + + + + + + + K T+K+++ L G VI Sbjct: 312 PPTPVQPAQFVPLKPGDPLHGQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIEL 371 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + NGK + CE+ + + + IRITD + ++ K Sbjct: 372 DRLAGEPVDMIVNGKLVAKCEVVVINETFGIRITDIVQPSERMTKAI 418 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 7/217 (3%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 P + D + + + + + V+I+ I Sbjct: 22 DPPAQKEPAVEFSDMER--DAIGEIANISMGTAATTLSQLLGKKVEITTPKVDMASAEQI 79 Query: 74 IHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 + V + + S +++ ++G + E P + + Sbjct: 80 RKDYPIPSVIVDVRYKAGIEGSNLLILSQRDGAVIVDLMMGGTGENPPTELSELGISGIS 139 Query: 133 KLAKRTIAQISAVLNQCISTTQESSP---NLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 + + + + ++ ++ + +P L D D S+E + I+ M Sbjct: 140 EAMNQMMGSAATSMSTMFNSVVDITPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRMV 199 Query: 190 IENVASSFVL-IIPQETLLKTTLISLSSQNKSENQSE 225 +E+V S ++ +IP L + S ++ E Sbjct: 200 VEDVIDSILVQVIPIHVAKGMVGKLLGTMGGSGSKPE 236 >gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911] gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911] Length = 408 Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 38/307 (12%), Positives = 82/307 (26%), Gaps = 36/307 (11%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHS 76 A L G++ E ++ +G VDIS S Sbjct: 128 ADLLGEIQLSAVQEAMNQMMG-----SAATSMSTIFSKRVDISPPSIDFLDVQQGEGTDR 182 Query: 77 FKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLL--GASHETIPQLYNRS-LS 128 ++ + + S S+ L+E L+ GA E ++ Sbjct: 183 IPDDDMLVKVSFRLKIGDLIDSSIMQVVPLEFAKRLVEELMNPGAQAENPAADLSKPDPV 242 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 ++ + A+ + + + Sbjct: 243 QAQEPAFHQPPAEPVPDMAAAPPGYGQGTAQYSGMETQTQRPAAQAAPQ----------- 291 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 L + N Q ++ + + + + Sbjct: 292 ---------HLGAHYPGGQPPQVQPAVFSNFEPQQLQESETKNLNMLLDIPLQVTVELGR 342 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 K ++KD++ L G +I + N + I E+ + +N+ +R+TD I+ Sbjct: 343 TKRSVKDILELSAGSIIELDKLAGEPVDILVNSRLIAKGEVVVIEENFGVRVTDIISQSD 402 Query: 309 KSLKNFL 315 + +KN Sbjct: 403 R-IKNLR 408 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 23/200 (11%), Positives = 68/200 (34%), Gaps = 2/200 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ + + F + Sbjct: 39 QDALGEIGNISFGSSATALSTLLNQKVEITTPTVSVILKRKLQEEFPHPYVAIQVSYTEG 98 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 +S + + + + + +LG L + ++ + + + ++ Sbjct: 99 FSGSNLLVIKQSDAAIIADLMLGGDGLNPADLLGEIQLSAVQEAMNQMMGSAATSMSTIF 158 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 S + SP DF D+ + ++ + ++ + I + + SS + ++P E + Sbjct: 159 SKRVDISPPSIDFLDVQQGEGTDRIPDDDMLVKVSFRLKIGDLIDSSIMQVVPLEFAKRL 218 Query: 210 TLISLSSQNKSENQSEDLID 229 ++ ++EN + DL Sbjct: 219 VEELMNPGAQAENPAADLSK 238 >gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427] gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium lentocellum DSM 5427] Length = 403 Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 41/366 (11%), Positives = 105/366 (28%), Gaps = 77/366 (21%) Query: 22 TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KEN 80 +G + +G + ++ V I+ ++ + I++ + Sbjct: 38 SGTVTLSPEETDALGEIGNICMGTAATTLFTLLNHKVLITTPKVEALTWEQFINTITDDL 97 Query: 81 FVFSQASLSSWSSNFFIGC---SNNLVITLL-------------ENLLGASHETIPQLYN 124 S + + + ++ L+ + L A E++ Q+ Sbjct: 98 TAVSVDYTEGFRGSNLMILKDHDVKIIADLMMGGTGAYAEGPVTDLHLSAIAESMNQMIG 157 Query: 125 RSLSTVEKKLAKRT------IAQISAVLNQCIST---TQESSPNLEDFYDIDYLKKNTNR 175 S +++ + K+ ++ A L + S L+ +I + Sbjct: 158 SSSTSMAQIFNKKIDISPPQALKMEANLEDIFGPKGDIVKISFRLQIEENIIDSELMQVL 217 Query: 176 LSNEFVTTINMNMTIE-----------------NVASSF-------VLIIPQETLLKTTL 211 I + E V+SS ++ P+ L Sbjct: 218 PIQFAKELIAGLLNQEQIATEEVAAPQPIENKSEVSSSVVQTATQPTMVQPESKLPPIME 277 Query: 212 ISLSSQNKS---------------------------ENQSEDLIDPFARKTYQLNVNIDT 244 + + + +N+ + +++ + Sbjct: 278 QPYMTNDPNYYGETYHKSVNNIRADVDVQTPQFQSFDNRPKVYPKENMDLLMDVSLEVSV 337 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + +K+++ G +I + NGK + + E+ + +N+ IRITD I Sbjct: 338 ELGRTSRKIKEILEFGPGSIIELNRLVGEPVDVLVNGKFVATGEVVVIDENFGIRITDII 397 Query: 305 NFDQKS 310 N + + Sbjct: 398 NPEDRI 403 >gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetivibrio cellulolyticus CD2] gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetivibrio cellulolyticus CD2] Length = 410 Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 78/288 (27%), Gaps = 26/288 (9%) Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN------FVFSQ 85 S++G + + D VDIS F + + F Sbjct: 137 LSAIGEAMNQMIGSAATSMSSMFDKRVDISPPRAFCMTFDNQQEDVFQPEDRLVKIAFKM 196 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 S +L++NL+ A+ E + N + S K Sbjct: 197 VIGELVDSEIMQLIPLKFAKSLVDNLINANSEAVAPPQNNNSSASSVK------------ 244 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ-- 203 N P + ++ + + + + F PQ Sbjct: 245 -NTPQVQPPPQQPQQQYTEQYPQQQQYPQQQYQQQYPPQQYPPMQQGMGQPFYGQAPQEQ 303 Query: 204 -ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + Q + + + + + +KD++ G Sbjct: 304 GRFREPINVQPAQFQAFDDGMISFERKNI-GLIMDVPLQVTVELGRTNRLIKDILEFGPG 362 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +I + NGK I E+ + +++ +RITD I+ ++ Sbjct: 363 SIIELDKLAGEPVDILVNGKVIAKGEVVVIDESFGVRITDIIHPSKRL 410 >gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684] gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684] Length = 301 Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 75/289 (25%), Gaps = 21/289 (7%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDV---DISYTSCQSGKFSHIIHSFKENFV-FSQASL 88 LG + + K+ V D++ + + F + + V S A + Sbjct: 5 DALMRLGASTAEAIAKVLDSLCPDQVERGDVAVLNPDTNPF----ATLEAPAVAVSVAYV 60 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + +++G + P+ LS +E Q+ A Sbjct: 61 DGVTGANVFVMTAKGARRIAASMMG---QPPPEDDASELSVLELSAVAEAANQMMAAAAA 117 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV---TTINMNMTIEN------VASSFVL 199 I + + + + E + E V ++FV+ Sbjct: 118 AIGVVLGQDVEIAPPETRLFNSASEAIDAYEMAPHGARATFRVCDEPCRLVQLVPNAFVV 177 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + + + + V + + + L + Sbjct: 178 RMTRALDEMGVEHVSGGASDGGEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDM 237 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELG-RVGKNYTIRITDRINFD 307 G V+ + L NG S L + +R+ + D Sbjct: 238 PAGSVLELDRKADDPVDLYVNGLRFASGTLVLTDDGEWALRLAEVAGRD 286 >gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI] gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI] Length = 422 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 26/361 (7%), Positives = 84/361 (23%), Gaps = 82/361 (22%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS--FKENFVFSQAS 87 + +G + ++ V I+ + S ++ + + Sbjct: 59 EEKDALGEIGNICMGSAATTLSVLLNQTVSITSPRVTITTMEEFVKSFTIPHMTIYVRFT 118 Query: 88 LSSWSSNFFIGCSNNLVITL---------------------------LENLLGASHETIP 120 S + + + ++G + ++ Sbjct: 119 -EGLSGYNLLFMKLRDAAVMADLMMGGDGSQASEDLTEISISAASEAMNQMIGTASTSMA 177 Query: 121 QLYNRS--LSTVEKKLAKRTIA-QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 + R +S E ++ + ++ ++ + + + D ++ + Sbjct: 178 AMIGRPVNISPPETRIVNKDNEARVFDLVQEEHIVVVWFKMTIGNILDTQIMQVMGINTA 237 Query: 178 NEFV--TTINMNMTIE------------------NVASSFVLI---IPQETLLKTTLISL 214 E + + A + Sbjct: 238 KEEANFILNRF-LQVGSEEEPSLPEDYPSARPDAGEAGRIDEAGEDFAASLFEDFSRPEP 296 Query: 215 SSQNKSENQSEDLIDPFA-------------------------RKTYQLNVNIDTRINLK 249 + + + + + + Sbjct: 297 GKEAERLQGPPAWEQEIRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPLKVTVILGRT 356 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + +KD++ L G V+ + + NG + E+ V +N+ +RIT I +++ Sbjct: 357 RWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVVVNENFGVRITSIIGPEER 416 Query: 310 S 310 Sbjct: 417 L 417 >gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908] gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 285 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 16/225 (7%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV L + +LG + ++ N L ++ +A I+ L + + Sbjct: 67 DLVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTT 124 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI-------IPQETLLKTTLISL 214 + L K + + M + +LI + + + Sbjct: 125 NAEIAKDLPKKEDYA---KAVVFSFKMEAIKESQIVLLITSAFEGQFEKTHKEEKEETTK 181 Query: 215 SSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S+ +++ L + R + +N+ RI KK LKDVV++ IG V+ Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 242 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 285 >gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99] gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] Length = 285 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 20/227 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI----------- 150 +LV L + +LG + ++ N L ++ +A I+ L Sbjct: 67 DLVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQELLPKLNFTTTN 125 Query: 151 -STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 +E + + + K ++ V I F +E T Sbjct: 126 AEIAKELPKKEDYAKAMVFSFKMEAIKESQIVLLIT-----SAFEGQFEKTHKEEKEETT 180 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + ++ + I + + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 KSATEETKTHDASLENIEIRNISM-LLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQ 239 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 240 LVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 285 >gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] Length = 393 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 36/311 (11%), Positives = 84/311 (27%), Gaps = 43/311 (13%) Query: 14 HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A L G D E S++ + + + VDIS + Sbjct: 108 DAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIFNKRVDISPPTLH 167 Query: 67 SGKFSHI--IHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + F + S SN + L+ +LLG+S E Sbjct: 168 LLDLTEGKGLEYLPDEDFFIKVSFRLKIGALVDSNIMQLLPIDFAKELVTHLLGSSAEAA 227 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 L P+ + + Sbjct: 228 GTLEKEE----------------------------NIDPSSAGAVPREEPQPAPAYAHAS 259 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 + N + + + ++ + + + Sbjct: 260 DGVFSSAASRFTNETVGGRSKEEESVAERHIQAADFAEFDDPPLAATEARNL-ELLFDVP 318 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K ++++++ L G +I + N K I E+ + +N+ +R Sbjct: 319 LQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENFGVR 378 Query: 300 ITDRINFDQKS 310 ITD ++ + + Sbjct: 379 ITDIVSQNDRL 389 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 19/194 (9%), Positives = 56/194 (28%), Gaps = 2/194 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ S + + F Sbjct: 36 QDAIGEIGNISFGSSATALSTLLNQKVEITTPSVSVVERKRVADEFPRPYVAIQVNYTEG 95 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + +LG T + ++ + + + ++ Sbjct: 96 FLGTNLLVIEQQDAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIF 155 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + + SP D+ K +F ++ + I V S+ + ++P + + Sbjct: 156 NKRVDISPPTLHLLDLTEGKGLEYLPDEDFFIKVSFRLKIGALVDSNIMQLLPIDFAKEL 215 Query: 210 TLISLSSQNKSENQ 223 L S ++ Sbjct: 216 VTHLLGSSAEAAGT 229 >gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470] gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470] Length = 288 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 92/284 (32%), Gaps = 24/284 (8%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106 + + + S + S S+ + LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEEAWESLISAPYARVMVSAIEKEESSIELVAPVVLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125 Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK----------TTLISLS 215 + E I + +E + S ++++ + S Sbjct: 126 TNAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEKTHQEEKEEETKKS 185 Query: 216 SQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + + L + R + +N+ RI KK LKDVV++ IG V+ Sbjct: 186 ATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 245 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 246 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 288 >gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM 16841] gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM 16841] Length = 379 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 35/351 (9%), Positives = 92/351 (26%), Gaps = 75/351 (21%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASL 88 + +G + ++ VDIS +S I ++++ VF A Sbjct: 29 AEKDAIGEIGNISMGTAATTLFSLVNRKVDISTPVVSFATWSDICDAYEKPCVFIRIAYT 88 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGA------------SHETIPQLYNRSLSTVEKKLAK 136 + + + V + + ++G I + N+ + + L+ Sbjct: 89 VGLDGSNILVLKEHDVKVITDLMMGGDGTNTDGELGELHLSAISEAMNQMMGSAATSLSS 148 Query: 137 RTIAQI-----SAVLNQCISTTQE---------------SSPNLEDFYDIDYLKKNTNRL 176 I A L E + D D + ++ Sbjct: 149 MLNKTIDISPPVADLVDLHDNIDEGSIADFLSGSFVKISFKMEIGDLVDSEIMQLYPVSF 208 Query: 177 SNEFVTTIN----------------------------MNMTIENVASSFVLIIPQETL-- 206 + E +I M + ++ Q + Sbjct: 209 AKEMCASITKNMEADTNSTSNEAEKAVSAQPAAPQPQMEQPMGGQQVMGQPMMGQPMMGQ 268 Query: 207 ------------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 + Q + + ++ + + + + ++ Sbjct: 269 PMMAPNMNQMYAQPVNVQPAQFQAFNPSIAQVAGAENIGLIMDVPLEVTVELGRTTKSIH 328 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +++ G +I + NGK + E+ + +++ +RIT+ + Sbjct: 329 EILDFAPGTIIELNRIAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVK 379 >gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1] gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1] Length = 287 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 21/282 (7%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106 + + + S + S S+ + +LV Sbjct: 14 STLEGLVGKASSVGLEKEVSNSEEAWESLISAPYARVMVSAIEKEESSIELLAPVDLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLNFTTTN 127 Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL------KTTLISLSSQNKS 220 + K + + + + +E + S ++++ ++Q+ + Sbjct: 128 AEIAKELPKKEDYTKAMV-FSFKMEAIKESQIILLTTAAFECQFEKTHKEEKEETTQSAA 186 Query: 221 ENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 187 EEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDP 246 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 247 LEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfitobacterium hafniense DCB-2] gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfitobacterium hafniense DCB-2] Length = 417 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 39/105 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 T + + + + + + + K T+K+++ L G VI Sbjct: 308 PPTPVQPAQFVPLKPGDPLHGQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIEL 367 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NGK I CE+ + + + IRITD + ++ K Sbjct: 368 DRLAGEPVDMIVNGKLIAKCEVVVINETFGIRITDIVQPGERMTK 412 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 67/215 (31%), Gaps = 9/215 (4%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 P + D + + + + + V+I+ I Sbjct: 22 DPPAQKEPAVEFSDMER--DAIGEIANISMGTAATTLSQLLGKKVEITTPKVDMASAEQI 79 Query: 74 IHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131 + V + + S +++ ++G + E +L S+S + Sbjct: 80 RKDYPIPSVIVDVRYKAGIEGSNLLILSQRDGAVIVDLMMGGTGENPPTELSELSISGIS 139 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSP---NLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 + + + + ++ ++ + +P L D D S+E + I+ M Sbjct: 140 EA-MNQMMGSAATSMSTMFNSVVDITPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRM 198 Query: 189 TIENVASSFVL-IIPQETLLKTTLISLSSQNKSEN 222 +E+V S ++ +IP L + S + Sbjct: 199 VVEDVIDSILVQVIPIHVAKGMVGKLLGTMGGSGS 233 >gi|255589689|ref|XP_002535050.1| conserved hypothetical protein [Ricinus communis] gi|223524126|gb|EEF27332.1| conserved hypothetical protein [Ricinus communis] Length = 104 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 3/103 (2%) Query: 205 TLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + Q+ ++ E + +V ++ I K L+D++ L+ G Sbjct: 1 MIEPIRETLDAGMQSDVDDIDERWVRSLREDVMSASVVVNGTIAEKDVALRDIIDLEPGD 60 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 VIP +L+ANG I LG+ N ++I ++ + Sbjct: 61 VIPVDL--GEKIVLTANGVPIMYARLGQSRGNLALQILEKFDR 101 >gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804] gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii] Length = 181 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 97 DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 156 Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318 + Y IR+TD I ++ + ++R Sbjct: 157 EEKYGIRLTDIITPSER-INRLNNRR 181 >gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. G11MC16] gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. G11MC16] Length = 394 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 36/311 (11%), Positives = 84/311 (27%), Gaps = 43/311 (13%) Query: 14 HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A L G D E S++ + + + VDIS + Sbjct: 109 DAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIFNKRVDISPPTLH 168 Query: 67 SGKFSHI--IHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + F + S SN + L+ +LLG+S E Sbjct: 169 LLDLTEGKGLEYLPDEDFFIKVSFRLKIGALIDSNIMQLLPIDFAKELVTHLLGSSAEAA 228 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 L P+ + + Sbjct: 229 GTLEKEE----------------------------NIDPSSAGAVPREEPQPAPAYAHAS 260 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 + N + + + ++ + + + Sbjct: 261 DGVFSSAASRFTNETVGGRSKEEESVAERHIQAADFAEFDDPPLAATEARNL-ELLFDVP 319 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K ++++++ L G +I + N K I E+ + +N+ +R Sbjct: 320 LQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENFGVR 379 Query: 300 ITDRINFDQKS 310 ITD ++ + + Sbjct: 380 ITDIVSQNDRL 390 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 18/194 (9%), Positives = 56/194 (28%), Gaps = 2/194 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ S + + F Sbjct: 37 QDAIGEIGNISFGSSATALSTLLNQKVEITTPSVSVVERKRVADEFPRPYVAIQVNYTEG 96 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + +LG T + ++ + + + ++ Sbjct: 97 FLGTNLLVIEQQDAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIF 156 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + + SP D+ K +F ++ + I + S+ + ++P + + Sbjct: 157 NKRVDISPPTLHLLDLTEGKGLEYLPDEDFFIKVSFRLKIGALIDSNIMQLLPIDFAKEL 216 Query: 210 TLISLSSQNKSENQ 223 L S ++ Sbjct: 217 VTHLLGSSAEAAGT 230 >gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103] gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103] gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355] Length = 137 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 NDKYGVRITDIITPSERM 132 >gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10] gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulolyticum H10] Length = 402 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 3/156 (1%) Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214 + +P+ ++ + +M + PQ + Sbjct: 250 QMAPSFDNQNSYIEPPLQPVMQPQIPQPMMQQSMPNFGYDGVYQ--EPQRQRAPVNVQPA 307 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 Q + S + L + + + + +KD++ G VI Sbjct: 308 QFQAFDDGLSVTEKKNIS-LIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEP 366 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK I E+ + +++ +RITD I+ ++ Sbjct: 367 VDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKRL 402 >gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70] gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. WCH70] Length = 401 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 43/311 (13%), Positives = 100/311 (32%), Gaps = 37/311 (11%) Query: 14 HPILLAR-LTGKLGDKKTI---EKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A + G G T E S++ + + VDIS + Sbjct: 110 DAAIIADLMLGGDGKNTTDSLGEIQLSAVQEAMNQMMGSAATSMSTIFGKRVDISPPTVH 169 Query: 67 S--GKFSHIIHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119 K I + VF + S SN + L++ LL Sbjct: 170 LLDVKEGEGIEYLPDEDVFIKVSFRLKIGNLIDSNIMQLLPVDFAKELVQQLL------H 223 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 S S V++ + + + + + T ++SP+ E +Y+ T + Sbjct: 224 STSETDSSSGVKEAGKETVMQEAALSKQSVTAETIDTSPSYELPKTENYVTHETAPSHRD 283 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 N ++ + ++ + ++ + + + Sbjct: 284 T-----------NHFGTY-----ARAGERQIQSVDFAEFEPSPPADAEVKNLS-LLLDVP 326 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K +++++++L G +I + N K I E+ + +N+ +R Sbjct: 327 LQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVR 386 Query: 300 ITDRINFDQKS 310 +TD I+ + Sbjct: 387 VTDIISQSDRL 397 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 17/220 (7%), Positives = 63/220 (28%), Gaps = 2/220 (0%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ S + ++ F Sbjct: 38 QDALGEIGNISFGSSATTLSMLLNQKVEITTPSVSVIERKNVADEFPLPYVAIQVNYTDG 97 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + +LG + + ++ + + + ++ Sbjct: 98 LLGTNLLVIKQEDAAIIADLMLGGDGKNTTDSLGEIQLSAVQEAMNQMMGSAATSMSTIF 157 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D+ + + ++ + I N + S+ + ++P + + Sbjct: 158 GKRVDISPPTVHLLDVKEGEGIEYLPDEDVFIKVSFRLKIGNLIDSNIMQLLPVDFAKEL 217 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 L S +++++ S + ++ + Sbjct: 218 VQQLLHSTSETDSSSGVKEAGKETVMQEAALSKQSVTAET 257 >gi|119469992|ref|ZP_01612797.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7] gi|119446702|gb|EAW27975.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7] Length = 133 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 6/113 (5%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 G+ +T R+ + + + + M ++S Sbjct: 27 DGEDGGGSTLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114 Q KF +H+ + I LV L++N LG Sbjct: 81 INGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFLGG 133 >gi|213418731|ref|ZP_03351797.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 102 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S ++ ++ D R+ + + L ++ LK G V+P I Sbjct: 5 ENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIA 62 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 +G + + + G V Y +R+ IN Sbjct: 63 HVDGVPVLTSQYGTVNGQYALRVEHLINP 91 >gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB] gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB] Length = 135 Score = 83.5 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 53 DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 112 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 113 NDKYGVRITDIITPSERM 130 >gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC 27750] gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC 27750] Length = 437 Score = 83.5 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 27/289 (9%), Positives = 76/289 (26%), Gaps = 19/289 (6%) Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ-SGKFSHIIHSFKE----NFVFSQA 86 S++G + + + +DIS ++ + FV Sbjct: 150 LSAIGEAMNQMMGSAATSMSSMFNRKIDISPPVANLVETYNELDEGMPAFLNKPFVKVAF 209 Query: 87 SL---SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + S LL +S ++ + ++ Q Sbjct: 210 KMQIGDLIDSEIMQLYPKEFAQELLNMFTPSSDDSSNSQPQPEPQPASQAPVQQPAPQAQ 269 Query: 144 AVLNQCISTTQESSPNLEDFYD----IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 V P++ ++ + + + + Sbjct: 270 PVQQPAPQAQSVQQPDMNMQQAGMMGQAVPQQGMAMQQGMPMQGMPYGYGMP-MQGMMGQ 328 Query: 200 IIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +P + + Q + + + + + + + ++KD+ Sbjct: 329 PMPMQGYAQPQDVNVAPAAFQPFATDVNPISQKENIELIKDVPLEVTVELGRTTKSIKDI 388 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + G ++ + NGK + E+ + +++ +RIT+ I Sbjct: 389 LEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEESFGVRITEIIK 437 Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 64/200 (32%), Gaps = 6/200 (3%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SS 90 + + + + V+I+ + + + + V Q S Sbjct: 52 KDAVGEISNISMGTAATTLSSLLSQKVNITTPKVEVATWDDLSREYDRPCVMMQISYKEG 111 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS--LSTVEKKLAKRTIAQISAVLNQ 148 + N + N V + + ++G + P LS + + + + + ++ Sbjct: 112 LAGNNVLILKENDVKIITDLMMGGTGTANPDEPLSELHLSAIGEA-MNQMMGSAATSMSS 170 Query: 149 CISTTQESSPNLED-FYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL 206 + + SP + + + L + N+ + M I + + S + + P+E Sbjct: 171 MFNRKIDISPPVANLVETYNELDEGMPAFLNKPFVKVAFKMQIGDLIDSEIMQLYPKEFA 230 Query: 207 LKTTLISLSSQNKSENQSED 226 + + S + S N Sbjct: 231 QELLNMFTPSSDDSSNSQPQ 250 >gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043] gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043] Length = 175 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K ++ L G VI + NG I E+ V Sbjct: 93 DLIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVV 152 Query: 293 GKNYTIRITDRINFDQKSLK 312 Y IRIT+ I ++ K Sbjct: 153 DDKYGIRITEIITPSERVKK 172 >gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1] gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1] Length = 135 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 53 DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 112 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 113 NDKYGVRITDIITPSERM 130 >gi|254255041|ref|ZP_04948358.1| Flagellar motor switch protein [Burkholderia dolosa AUO158] gi|124899686|gb|EAY71529.1| Flagellar motor switch protein [Burkholderia dolosa AUO158] Length = 292 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 81/288 (28%), Gaps = 32/288 (11%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 L P L R LGD +L +L + + + +S ++ + Sbjct: 29 ALDPCTLGRPFHLLGDFHA------ALRRRIGTYLQDSYNHRCGARLIVSDSAIVPHRSG 82 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + ++ I L++ LL G E + + + E Sbjct: 83 EALAAWHG--------FGDDQGAIGIRIERGLLLLLLAYHYGDRAERLEADSLPAETRTE 134 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 ++ + + E P LE ++ + ++ + Sbjct: 135 QRF----------AMQTRRALLGELLPLLELDAGALTPQQFDGIGPGSQILSVIVRDESL 184 Query: 192 NVASSFVLIIPQETLLKTTLI-SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 +V + L + +D + V ++ I ++ Sbjct: 185 DVTGRIEFALDDAWLARLFATCVPRRVRDRAPSDDD--GALGARI---PVALNATIVTRE 239 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 L DV+ L G ++P A + +G +++ + G + Sbjct: 240 LLLGDVLDLNRGSILPIRLP--DAADVDVDGLKVFRAAVVEHGGKICL 285 >gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermincola sp. JR] gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermincola potens JR] Length = 412 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + I + K T+++++ L G V+ L NGK + E+ + Sbjct: 331 DLIMDVPLQITVELGKAKKTIREILNLAPGSVVELDKLAGEPVDLMVNGKLLAKGEVVVI 390 Query: 293 GKNYTIRITDRINFDQKSLK 312 +N+ IRITD ++ ++ Sbjct: 391 DENFGIRITDIVSPMERVTN 410 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 24/207 (11%), Positives = 68/207 (32%), Gaps = 5/207 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKT--IEKISSSLGYLYKKFLPKIFKEKMDLDV 58 +R + + + P G GD+ T + + + + V Sbjct: 15 LRSDAFQEAINASEPDTHQAAAGPTGDELTNMEKDAVGEVANMVMGSAATALSTLLGKKV 74 Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHE 117 +I+ + + + H + ++ ++ + + + +++ ++ Sbjct: 75 EITTPVVEITTPARLRHEYPLPYLLVNVEYVTGIKGSNVLIIKDGDAGVIVDLMMMGDGT 134 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK-NTNRL 176 + P + + + + S + I E SP D ++ + Sbjct: 135 SPPAQLEEMHLSAIAEAMNQMMGSASTAFSTIIKERVEISPPTVDLINLATDELKGRLAN 194 Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIP 202 +E + ++ MTIE+ V S + ++P Sbjct: 195 PDEPIVKVSFKMTIEDLVNSEMMQLMP 221 >gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464] Length = 290 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 25/230 (10%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 LV L + +LG + ++ N L ++ +A I+ L QE P L Sbjct: 70 LVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN- 122 Query: 163 FYDIDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLIS-------- 213 + + E + + +E + S ++++ + Sbjct: 123 -FTTINAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAAFERQFEKMHQEEKEEK 181 Query: 214 ----LSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 S+ + + L + R + +N+ RI KK LKDVV++ IG V+ Sbjct: 182 EETTKSTAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVE 241 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 242 LDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290 >gi|115358963|ref|YP_776101.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria AMMD] gi|115284251|gb|ABI89767.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria AMMD] Length = 381 Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 78/291 (26%), Gaps = 19/291 (6%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P+ G D I ++L L + V++ S Sbjct: 98 IDPLAENEWLGDAADPAVPAVIRAALLADLAAPLAAALQAATRQRVEL-LPPPASVPAW- 155 Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + F W + + + + A+ + + + Sbjct: 156 --RTAPAALRFELRRADGAWRCHGALLFDAPDALAV----FFATPVATRADTRAAYAGLP 209 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 L + + +E + + R+ I + Sbjct: 210 VPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNLLCVARVPAAPAWEITGRPSGN 268 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + + +P L T + S+ + + R L V++ + Sbjct: 269 RLTVERIREMP---LEPTRTDTPSATTHDASADDA-----PRSLDSLAVDLRFELPPTSI 320 Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 L ++ TL+ G VI L ANG I + +L VG+ +R+ Sbjct: 321 PLGELGTLQPGAVIELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 371 >gi|33592494|ref|NP_880138.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I] gi|33572140|emb|CAE41683.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I] gi|332381912|gb|AEE66759.1| flagellar motor switch protein FliN [Bordetella pertussis CS] Length = 166 Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 82 DLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 141 Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318 Y IR+TD I ++ + +R Sbjct: 142 DDKYGIRLTDIITPSER-INRLNSRR 166 >gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b] gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b] Length = 136 Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 54 DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 113 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 114 NDKYGVRITDIITPSERM 131 >gi|33601557|ref|NP_889117.1| flagellar motor switch protein [Bordetella bronchiseptica RB50] gi|33575993|emb|CAE33073.1| flagellar motor switch protein [Bordetella bronchiseptica RB50] Length = 172 Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 88 DLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 147 Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318 Y IR+TD I ++ + +R Sbjct: 148 DDKYGIRLTDIITPSER-INRLNSRR 172 >gi|260432994|ref|ZP_05786965.1| surface presentation of antigens protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416822|gb|EEX10081.1| surface presentation of antigens protein [Silicibacter lacuscaerulensis ITI-1157] Length = 331 Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 31/267 (11%), Positives = 82/267 (30%), Gaps = 16/267 (5%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L + E+ L + + QSG+ + + + + LV Sbjct: 3 LARAAVERFRLSASV-IGAKQSGRRQEAVTEGLDESRLFLLFAADEQRVACLAMDPGLVA 61 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN--LEDF 163 +++ + R + + + + ++ A Q + ++ + E Sbjct: 62 AVIQKQTIGEV-SPDPPPVRKFTDTDAAIVAPLVEEMLARGAQLVEEPEDKARLSGYEFL 120 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIEN--VASSFVLIIPQETLLKTTLISLSSQNKSE 221 L+ + L + ++ + +E L++P ++ + E Sbjct: 121 SRASGLRAVSLALVQDVYDVFDLTVELEGGVRQGVVSLLLPPQSAKP---------DSHE 171 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-AN 280 Q + A + L + I L ++ L G+V+P + + + Sbjct: 172 EQGAEGGAKLADASGVLRAELTAVIAQMHLPLSELSALTEGKVLPLSNARLDRIAMQAID 231 Query: 281 GKEIYSCELGRVGKNYTIRITDRINFD 307 + + LG+ G +R+ + Sbjct: 232 RTRVATGRLGQCGGMRAVRLNEAHASK 258 >gi|172063755|ref|YP_001811406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MC40-6] gi|171996272|gb|ACB67190.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MC40-6] Length = 381 Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 77/291 (26%), Gaps = 19/291 (6%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P+ G D I ++L L + V++ S Sbjct: 98 IDPLAEHEWLGDAADPAVPAVIRAALLADLAAPLTAALQAATRQRVEL-LPPPASVPAW- 155 Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + F W + + + + A+ + + + Sbjct: 156 --RTAPAALRFELRRADGAWRCHGALLFDAPDALAV----FFATPAATRADTRAAYAGLP 209 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 L + + +E + + R+ I + Sbjct: 210 VPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNLLCVARVPAAPAWEITGRPSGN 268 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + + +P L T + S + + R L V++ + Sbjct: 269 RLTVERIREMP---LEPTRTDTPSVTTHDASADDA-----PRSLDSLAVDLRFELPPTSI 320 Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 L ++ TL+ G VI L ANG I + +L VG+ +R+ Sbjct: 321 PLGELGTLQPGAVIELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 371 >gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus cellulosilyticus DSM 2522] gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus cellulosilyticus DSM 2522] Length = 398 Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 32/288 (11%), Positives = 82/288 (28%), Gaps = 40/288 (13%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH--SFKENFVFSQAS 87 I + ++ + + VDIS + +F ++ V Q S Sbjct: 141 QISAVQEAMNQ-MMGSASTSMSQIFNKRVDISPPDVEQLNLKEDPDKVTFPDDDVMLQIS 199 Query: 88 LSSWSSN-----FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142 S +++ LL + E I + + + + + + Q Sbjct: 200 FDLKVGTLIDSKIMQLVSVEFAKDMVDQLL--NPEPIEDITEKDANVNTQPVEETVTQQA 257 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202 + + + + + S +P Sbjct: 258 F-------------------PQTNEQPQ----MDATNQHQSARQEPQFVSNGSR----LP 290 Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + + + N Q + + + + + K ++KD++ L G Sbjct: 291 DRSAE---VQPAAFSNFETPQLGNNEAKNLDMLLDIPLEVTVELGRTKRSIKDILELTQG 347 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +I + N + I E+ + +N+ +R+TD ++ ++ Sbjct: 348 SIIELDKLAGEPVDILVNQRLIAKGEVVVIDENFGVRVTDIVSKRERL 395 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 49/165 (29%), Gaps = 1/165 (0%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 + +G + ++ VDI+ K S + F + S Sbjct: 41 SSIEQDALGEIGNISFGSSATALSTLLNQKVDITTPRVSIVKSSELDQQFPKPHIAVSVQ 100 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + N + + +LG + + ++ + + S + Sbjct: 101 YTVGFEGMNLLVIKNTDAAIIADLMLGNDGTNAGEELGEMQISAVQEAMNQMMGSASTSM 160 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +Q + + SP + ++ ++ + I+ ++ + Sbjct: 161 SQIFNKRVDISPPDVEQLNLKEDPDKVTFPDDDVMLQISFDLKVG 205 >gi|254485678|ref|ZP_05098883.1| Surface presentation of antigens protein [Roseobacter sp. GAI101] gi|214042547|gb|EEB83185.1| Surface presentation of antigens protein [Roseobacter sp. GAI101] Length = 413 Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 65/222 (29%), Gaps = 12/222 (5%) Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + LV L++ P + R ++ + LA I + + + T + Sbjct: 83 GAVMIDPALVGGLIQQQTMGKVLDAPAGFVRPMTGTDAALAAPLIDALLERAAKLVETDE 142 Query: 155 E----SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + + L + + + ++M VL +P Sbjct: 143 DRAVLTGYRFGAKSHNVRLLMLSLDAPEFHIIRMTVDMAQGARQGELVLCLPV----PPR 198 Query: 211 LISLSSQNKSENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + + QL + + +++D L +GQV+P Sbjct: 199 HAVAAPTSPDAGSAAADPVAPRTLSASVLQLKAELMVSLAQVTMSIRDAGGLHVGQVLPL 258 Query: 268 LHREKTCAILSA-NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + +G+ + LG+ +R+ R+ Sbjct: 259 GSVSFDAAQVRTKDGRILGVGSLGQSDGMRAMRLKHRVKTRD 300 >gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus silvestris StLB046] Length = 422 Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 36/311 (11%), Positives = 86/311 (27%), Gaps = 23/311 (7%) Query: 14 HPILLAR-LTGKLG---DKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A + G G + E S++ + + + VDIS + Sbjct: 117 DAAIIADLMLGGDGINPRPELSEIQLSAVQEAMNQMMGSAATSMSTVFNQKVDISPPTID 176 Query: 67 S--GKFSHIIHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + + + S SN ++++L+G + E + Sbjct: 177 LLNISQNEGTDTIPTDELLVKISFRLRIGELIDSNLMQLLPLKFSKKIVKSLMGETDEPL 236 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 V+ + Q + P E + + E Sbjct: 237 TATTTVEPPPVQPTQQQPMQQAQQPTAQQSMFEQPVQQPMYEQP----VPQPVYQQPIYE 292 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 + V P T + + + Sbjct: 293 QPVQQQAYQQQQPVYEQ-----PAYTAPPANVQQAQFASFESANITQSEARNLNMLLDIP 347 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K ++K+++ L G +I + N + I E+ + +N+ +R Sbjct: 348 LQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVR 407 Query: 300 ITDRINFDQKS 310 ITD ++ + Sbjct: 408 ITDILSQADRL 418 Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 21/190 (11%), Positives = 61/190 (32%), Gaps = 2/190 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90 +G + + VDI+ S + + F +V Q + Sbjct: 45 IDALGEVGNISFGSSATALSSLLGQKVDITTPSISMINRNRLEQEFPHPYVAVQVEYTTG 104 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 S + + + + +LG + + ++ + + + ++ Sbjct: 105 LSGMNLLVIKQSDAAIIADLMLGGDGINPRPELSEIQLSAVQEAMNQMMGSAATSMSTVF 164 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + + SP D +I + ++E + I+ + I + S+ + ++P + K Sbjct: 165 NQKVDISPPTIDLLNISQNEGTDTIPTDELLVKISFRLRIGELIDSNLMQLLPLKFSKKI 224 Query: 210 TLISLSSQNK 219 + ++ Sbjct: 225 VKSLMGETDE 234 >gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium sticklandii DSM 519] gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium sticklandii] Length = 383 Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 87/305 (28%), Gaps = 50/305 (16%) Query: 21 LTGKLGDKKTIEKI----SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHI 73 + G G E++ S++ + + E + +DI+ FS Sbjct: 111 MLGGDGKSDIPEELNEIHLSAISEAMNQMIGSSSTSLSEMLAKKIDITPPIVSKVNFSDS 170 Query: 74 -----IHSFKENFVFSQASL---SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + S E + + S + L+ +L E Q+ Sbjct: 171 QLDPELLSADEPIICISFRMTVGDLIDSTIMQILPIDFARALVNRMLYGESEEEEQVTET 230 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 V K++ + S + ++ + + +KN F + + Sbjct: 231 IEPQVAKQVEPQVQEDYSDDIEDDEYYEEDDDDSYYEPQKPPKKQKNVKVKPAAFASFDS 290 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 N NV + L + + + Sbjct: 291 PNKRTGNVPENIDL-----------------------------------IKDVLLKVTVE 315 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + D++ G ++ + NGK++ E+ + +NY IRITD I Sbjct: 316 LGRTTKPIDDILQFTPGSILELDRLVGEPLDIMVNGKKVAKGEVVVIDENYGIRITDIIK 375 Query: 306 FDQKS 310 +++ Sbjct: 376 AEKRL 380 >gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83] Length = 137 Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 115 ADKYGVRITDIITPSERMHR 134 >gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74] Length = 134 Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111 Query: 293 GKNYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 112 ADKYGVRITDIITPSERMHR 131 >gi|157959917|ref|YP_001499951.1| hypothetical protein Spea_0087 [Shewanella pealeana ATCC 700345] gi|157844917|gb|ABV85416.1| conserved hypothetical protein [Shewanella pealeana ATCC 700345] Length = 293 Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 84/294 (28%), Gaps = 28/294 (9%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 P+ L+ + +++ + + L I ++ +S T Sbjct: 17 EVRPV--ALIKEKLARSRLLAQLDQCLRPIMDAVNELLHPIIRQGHHGLSQVSLT----T 70 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K S + + + + + L GA T + RS S Sbjct: 71 KTSSYVPELHHAWFLLSYNRIALGWW---RIDKCTLDQLASGYYGAFASTP-KSPLRSPS 126 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E +L KR + L P E D L+ +N + ++ Sbjct: 127 QSEFRLVKRLMIAAIKRL-----------PITEIDEDALELELLSNETPIKAPVCCELSF 175 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + + + + L + Q L + A + Q+ + + + Sbjct: 176 PAAHSGPPMLFFMSEYLLGLMAELPSQYQ-----ADPALSEKLAHRLRQIPLRVLLELGH 230 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T+L + L +G V+P + + ++ + ++T Sbjct: 231 QSTSLTSLQNLAVGDVLPMNLHSRCPVT--VGKRPLFYATVHTHEGQMVAKLTQ 282 >gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146] gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella ictaluri 93-146] Length = 137 Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 + +RITD I ++ Sbjct: 115 NDKFGVRITDIITPSERM 132 >gi|332702323|ref|ZP_08422411.1| flagellar motor switch protein FliN [Desulfovibrio africanus str. Walvis Bay] gi|332552472|gb|EGJ49516.1| flagellar motor switch protein FliN [Desulfovibrio africanus str. Walvis Bay] Length = 181 Score = 82.4 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 37/93 (39%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +++++ + + + + + K + +++ L G V+ + Sbjct: 85 HEAKSPRPEQTKRDLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEI 144 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK + E + + + IR+TD I+ ++ Sbjct: 145 YVNGKLVARGEAVVINEKFGIRLTDIISPIERV 177 >gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a] Length = 414 Score = 82.4 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 90/304 (29%), Gaps = 25/304 (8%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK---FSHIIHSFKENFV 82 D+ I +S + E + + +DIS + + + ++++ + Sbjct: 105 FDELNISAVSEVMNQ-MMGASSTALSEFLGMGIDISTPTPYILSEINIAD-LQNYEQTDM 162 Query: 83 FSQASLSSW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + S F +L TL + ++G + P + + + + + + Sbjct: 163 VAAINFDLTIDGVIKSEFISVLDIDLAATLADRMIGGATSPEPIVTEPAPAPAPQPVPQA 222 Query: 138 TIAQISAVLNQC--------ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN-- 187 Q +A + Q + + ++ + Sbjct: 223 EPVQQAAPVQQATPVPQATPMPQVAPVQQAAPVPQAAPMPQVAPVPQADMYAQQGYYGYP 282 Query: 188 ---MTIENVASSFVLII-PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 M ++ PQ + ++ + + + + I Sbjct: 283 NPAMNPAMYGQPVQPVMQPQPAVNYRNAQLAQFESFEAPLGSEQKENLQ-LLMDVPLQIS 341 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 I K +KD++ G +I + + NG I ++ + N+ +RIT+ Sbjct: 342 VEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAVRITEI 401 Query: 304 INFD 307 + Sbjct: 402 VKSK 405 >gi|134298951|ref|YP_001112447.1| MCP methylation inhibitor CheC [Desulfotomaculum reducens MI-1] gi|134051651|gb|ABO49622.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1] Length = 333 Score = 82.4 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 34/295 (11%), Positives = 87/295 (29%), Gaps = 24/295 (8%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88 I +G + + + V I Y + + SF ++ + Sbjct: 34 QELDIIGEIGNICMGTAATTLSQLLSQRVIIGYPKIIVCQQDEVFGSFSTPYLIIEVQFK 93 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + + + + + ++G + + + LS + + I + + Sbjct: 94 EGLNGFNVLVINEEEIAIIADIMMGGNGQVTKPVMITEMELSASTEA-MNQMIGSSATAM 152 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---- 202 + +P + +T +++ V +TI ++ + + I Sbjct: 153 ADLFGIGIDIAPPKATMVEDLLNASHTPLPTDKPVVVARFEITIGDIIKTTFMQITNVDA 212 Query: 203 ----QETLLKTTLISLSSQNKSENQSEDLIDPFARK-----------TYQLNVNIDTRIN 247 LL + + + E +I F + + V+++ + Sbjct: 213 ARDQANYLLMKAGACDAENTEEKASDETVIQNFTQTKAPFDLPNLAGALAIPVDLEFSLG 272 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T D+ LK G + L G + EL + I+I+ Sbjct: 273 KIRCTAGDLAKLKKGDTLAIP-FSSQQIKLLVGGIPVALGELQTHAEETKIKISR 326 >gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7] gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7] Length = 188 Score = 82.4 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 104 DMIMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 163 Query: 293 GKNYTIRITDRINFDQKS 310 + Y IR+TD I + Sbjct: 164 DEKYGIRVTDIITPSDRI 181 >gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227] gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227] Length = 137 Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 115 ADKYGVRITDIITPSERMHR 134 >gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602] gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602] Length = 138 Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 DMILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 116 ADKYGVRITDIITPSERM 133 >gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus thermoglucosidasius C56-YS93] Length = 395 Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 85/290 (29%), Gaps = 42/290 (14%) Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSH--IIHSFKENFVFSQASLS 89 S++ + + VDIS + I VF + S Sbjct: 134 LSAVQEAMNQMMGSSATSMSTIFGKRVDISPPTLHLLNVREEKGIEYLPNEDVFIKVSFR 193 Query: 90 S-----WSSNFFIGCSNNLVITLLENLLGASHETIPQL--YNRSLSTVEKKLAKRTIAQI 142 SN + L++ LL +S E+ + N + ++ + Sbjct: 194 LKIGDLIDSNIMQLLPVDFAKELVKQLLHSSGESSGEPTSSNSAPEAEKEAAVQEAAVSQ 253 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202 +V + I P+ ++ + + +++ Sbjct: 254 PSVTAEAIGAQPSYEPSKTAAHETANHFGANAKSGERQIQSVDF---------------- 297 Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 S + ++ + + + + + K ++++++ L G Sbjct: 298 -AEFEP-----------SPSADTEVKNL--SLLLDVPLQVTVELGRTKRSVQEILQLSSG 343 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 +I + N K I E+ + +N+ +R+TD I+ + K Sbjct: 344 SIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVTDIISQSDRLKK 393 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 16/194 (8%), Positives = 57/194 (29%), Gaps = 2/194 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ S + ++ F Sbjct: 37 QDALGEIGNISFGSSATALSVLLNQKVEITTPSVSIIQRKNVDSEFPLPYVAIQVNYTDG 96 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + +LG + ++ + + + ++ Sbjct: 97 FLGTNLLVIKQEDAAIIADLMLGGDGTNTADELGEIQLSAVQEAMNQMMGSSATSMSTIF 156 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP ++ K + + ++ + I + + S+ + ++P + + Sbjct: 157 GKRVDISPPTLHLLNVREEKGIEYLPNEDVFIKVSFRLKIGDLIDSNIMQLLPVDFAKEL 216 Query: 210 TLISLSSQNKSENQ 223 L S +S + Sbjct: 217 VKQLLHSSGESSGE 230 >gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8] gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8] Length = 179 Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 95 DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 154 Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318 Y IR+TD I ++ + ++R Sbjct: 155 EDKYGIRLTDIITPSER-INRLNNRR 179 >gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52] Length = 290 Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 25/230 (10%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 LV L + +LG + ++ N L ++ +A I+ L QE P L Sbjct: 70 LVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN- 122 Query: 163 FYDIDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK------------T 209 + + E I + +E + S ++++ + Sbjct: 123 -FTTINAEIAKELPKKEDYAKMIVFSFKMEALQESQIILLTTVAFERQFKKTHQEEKEEK 181 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + S+ + + L + R + +N+ RI KK LKDVV++ IG V+ Sbjct: 182 EETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVE 241 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 242 LDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290 >gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium papyrosolvens DSM 2782] gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium papyrosolvens DSM 2782] Length = 400 Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 1/110 (0%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 PQ ++ + Q + S + L + + + + +KD++ Sbjct: 292 EPQRQRSPVSVQPVQFQAFDDGLSATEKKNIS-LIMDLPLQVTVELGRTQKLIKDILEFG 350 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G VI + NGK I E+ + +++ +RITD I+ ++ Sbjct: 351 SGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKRL 400 >gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC 824] gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain [Clostridium acetobutylicum ATCC 824] Length = 413 Score = 82.0 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + I + K +KD++ L G +I + + NGK++ E+ V Sbjct: 331 DLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVV 390 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +RIT +N +++ Sbjct: 391 DENFGVRITSIVNSEERI 408 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 59/201 (29%), Gaps = 2/201 (0%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + + V+I+ + +F+ +S Sbjct: 43 KDLLGEIGNISMGSASTALSTIIGQKVNITTPIVSVTTLETLKKNFEVPNVALDVKYVSG 102 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 S + + ++G + + + + + + I + + + Sbjct: 103 ISGENLLVMKVTDAAVIANLMMGGDGKVESKTLSEIELSAVSEAMNQMIGSAATSMATML 162 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 SP + +D N +E + + +TI + V S + I+P +T K Sbjct: 163 LREVNISPPVSKIWDSKTDVLTDNIKEDENIVQVAFKLTIGDLVDSQIMQILPIDTSRKM 222 Query: 210 TLISLSSQNKSENQSEDLIDP 230 I + + E Sbjct: 223 IDIMMGGSSNKEEPEVQQSAA 243 >gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein [Edwardsiella tarda EIB202] gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein [Edwardsiella tarda EIB202] gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60] Length = 137 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 + +RITD I ++ Sbjct: 115 NDKFGVRITDIITPSERM 132 >gi|255026112|ref|ZP_05298098.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003] Length = 515 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 28/286 (9%), Positives = 84/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V +S + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLSVPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + V ++ K L+ ++ Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515 >gi|21672365|ref|NP_660432.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008471|sp|Q8KA39|FLIM_BUCAP RecName: Full=Flagellar motor switch protein FliM gi|21622970|gb|AAM67643.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 311 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 29/269 (10%), Positives = 91/269 (33%), Gaps = 10/269 (3%) Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF 83 + K + + + + IF + ++++++ + + +++ +F ++ Sbjct: 26 DRFLDQNEMKKLEKINKKFIQKIIMIFSSFIKSNIELNFYTVKINSYTNDDKNF-KHLYA 84 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY-NRSLSTVEKKLAKRTIAQI 142 + + + FI S N + ++ L G +I ++ + ++ E + K+ + I Sbjct: 85 NSLKIETLEKKSFIFFSPNFLSVFIDFLFGGKGNSIIRMDIKKEITYTEHVINKKIVGFI 144 Query: 143 SAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 + DF I +N+ T + + + ++I Sbjct: 145 IDAYCESCKDFFYIDIKFLDFNIIKLNKHFF---YTNDLFITNYFSFNLNGIKIFLSILI 201 Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P + + ++ +K+ + ++ F + +++ + + L Sbjct: 202 PVSIIKEKNKKIINFLDKNIFSKKTILKENFFIENLSNIELDVTVELIPSYISKHTFDNL 261 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCE 288 + G VI + K I+ + Sbjct: 262 REGDVITIEDP--GKVTVCIEKKPIFLGK 288 >gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus curdlanolyticus YK9] gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus curdlanolyticus YK9] Length = 411 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 34/311 (10%), Positives = 81/311 (26%), Gaps = 45/311 (14%) Query: 21 LTGKLGD--KKTIEKI-SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKF--SH 72 + G G+ + +I S++ + + + V+IS Sbjct: 125 MLGGEGEVMPAELNEIHISAVQEAMNQMMGSSATSMSTIFNRFVNISPPGINILDVENGD 184 Query: 73 IIHSFKENFVFSQASLSSWSS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 +++ + VF S + ++ L+G E + Sbjct: 185 GVNTLPDEDVFINVSFRLMIGDLIDSTIMQLLPVSFAKQMVATLMGGMDEPAAPAPVAAA 244 Query: 128 STVEKKLAKRTIAQISAV------LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 A ++ A + + P + N Sbjct: 245 VETAAPAAPAQVSAPPAAAYTPPPMQEA-PPMYAQQPMYAQQPMYAQPPQGPN------- 296 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 T V + + + +L + + Sbjct: 297 -------TYGQVPGR------NVNVQPVQFANFQGAPYVQADDTNL-----NLLLDIPLK 338 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + +KD++ L G +I + N K I E+ + +N+ +R+T Sbjct: 339 VTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVT 398 Query: 302 DRINFDQKSLK 312 D ++ + K Sbjct: 399 DIVSQWDRMQK 409 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 67/218 (30%), Gaps = 3/218 (1%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 QS +T + P + + +G + + VDI+ Sbjct: 18 QSSDDDTDSVAPSAETAVIAD-FLNNIEQDALGEIGNITFGSAATALSTLLGKKVDITTP 76 Query: 64 SCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 K S + F + S + + + + + + +LG E +P Sbjct: 77 QVTLVKRSELKDVFPKPHVAVSVQYVDGFQGINSLVIKTHDAQVIADLMLGGEGEVMPAE 136 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 N + ++ + + + ++ + SP + D++ + Sbjct: 137 LNEIHISAVQEAMNQMMGSSATSMSTIFNRFVNISPPGINILDVENGDGVNTLPDEDVFI 196 Query: 183 TINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNK 219 ++ + I + + S+ + ++P + + ++ Sbjct: 197 NVSFRLMIGDLIDSTIMQLLPVSFAKQMVATLMGGMDE 234 >gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C] gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C] Length = 97 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 ++ D + + ++ + + T++D++ L G VI Sbjct: 1 MEAQTPRNGDSTRRL-DLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLD 59 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG+ + E V + +RITD ++ ++ Sbjct: 60 ILVNGRLVARGEAVVVNDKFGVRITDIVSPQERI 93 >gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20] Length = 290 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 94/286 (32%), Gaps = 26/286 (9%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106 + + + S +++ S+ + LV Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEESWESLISVPYARVVISAIEKEESSIELLAPVVLVTA 73 Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 L + +LG + ++ N L ++ +A I+ L QE P L + Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125 Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK------------TTLIS 213 + E + + +E + S ++++ + + Sbjct: 126 INAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAVFERQFEKTHQEEKEEKEETT 185 Query: 214 LSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 S+ + + L + R + +N+ RI KK LKDVV++ IG V+ Sbjct: 186 KSAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 245 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 246 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290 >gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018] Length = 395 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + I + K +KD++ L G +I + + NGK++ E+ V Sbjct: 313 DLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVV 372 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +RIT +N +++ Sbjct: 373 DENFGVRITSIVNSEERI 390 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 59/201 (29%), Gaps = 2/201 (0%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + + +G + + V+I+ + +F+ +S Sbjct: 43 KDLLGEIGNISMGSASTALSTIIGQKVNITTPIVSVTTLETLKKNFEVPNVALDVKYVSG 102 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 S + + ++G + + + + + + I + + + Sbjct: 103 ISGENLLVMKVTDAAVIANLMMGGDGKVESKTLSEIELSAVSEAMNQMIGSAATSMATML 162 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 SP + +D N +E + + +TI + V S + I+P +T K Sbjct: 163 LREVNISPPVSKIWDSKTDVLTDNIKEDENIVQVAFKLTIGDLVDSQIMQILPIDTSRKM 222 Query: 210 TLISLSSQNKSENQSEDLIDP 230 I + + E Sbjct: 223 IDIMMGGSSNKEEPEVQQSAA 243 >gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein [Paenibacillus polymyxa SC2] gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus polymyxa SC2] Length = 437 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + +KD++ L G +I + N K I E+ + Sbjct: 356 NLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMVNNKLIAKGEVVVI 415 Query: 293 GKNYTIRITDRINFDQKSLK 312 +N+ +R+TD ++ + K Sbjct: 416 DENFGVRVTDIVSQWDRIQK 435 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 65/225 (28%), Gaps = 5/225 (2%) Query: 1 MRGQSIH---KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57 + + I K + A T + +G + + Sbjct: 7 LSQEEIDALLKQSEAGTDSTPAGKTVDDFLTSLEQDALGEIGNITFGSAATALSTLLGQK 66 Query: 58 VDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 VDI+ S +F + + + + + + +LG Sbjct: 67 VDITTPKVSIITRSEFETAFPKPHVAVHVNYVDGFEGINSLVIKKRDAQVIADLMLGGEG 126 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + N + ++ + + + ++ + SP D D + ++ Sbjct: 127 NPADEELNEIHISAVQEAMNQMMGSSATSMSTMFNRFVNISPPGIDILDPLHGDGVSSLP 186 Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKS 220 E + T++ + I + + S+ + ++P K I ++ Sbjct: 187 DEETLITVSFRLLIGDLIDSTLMQLLPVNFAKKMVSILMNGGEDD 231 >gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ] gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ] Length = 155 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K ++ L G V+ + NG I E+ V Sbjct: 73 DMIMDIPVKLSVELGRTRITIKQLLELAQGSVVELDGLAGEPMDILINGYLIAQGEVVVV 132 Query: 293 GKNYTIRITDRINFDQKSLK 312 Y IRIT+ I ++ K Sbjct: 133 DDKYGIRITEIITPSERVQK 152 >gi|119384526|ref|YP_915582.1| surface presentation of antigens (SPOA) protein [Paracoccus denitrificans PD1222] gi|119374293|gb|ABL69886.1| surface presentation of antigens (SPOA) protein [Paracoccus denitrificans PD1222] Length = 392 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 29/260 (11%), Positives = 77/260 (29%), Gaps = 13/260 (5%) Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114 L V + + + E + + + + +L+ L+E Sbjct: 74 GLPVFVEKVERAGMVLAELPELLPERALLAVVGGRR-DALGVVAICPDLLAALIEMQAIG 132 Query: 115 SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ--CISTTQESSPNLEDFYDIDYLKKN 172 + P R + + ++ + + A L + +D + Sbjct: 133 RVTSRPAPPRRP-TRTDAAISADFVNALLAELGRECAARDGCPDFGAYRYATFMDDPRPL 191 Query: 173 TNRLSNEFVTTINMNMTIE---NVASSFVLIIPQETLLKT--TLISLSSQNK---SENQS 224 + L + +T ++ I ++ +P +Q++ + + Sbjct: 192 SLLLEDGEMTRLDFRFRIGTGGQRDGRLMIALPARVGAPPDAVPAIAGNQSRLPVAPSAD 251 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKE 283 + A + + + + ++ +L + L G ++P A L G+ Sbjct: 252 PPVAPSLAEAVQEAPIRLAGILCRRRLSLHQLRGLATGSLLPLPQNVLDEARLETPQGQL 311 Query: 284 IYSCELGRVGKNYTIRITDR 303 + LG + IR+ D Sbjct: 312 LARGRLGEKDGFHAIRLRDI 331 >gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685] gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685] Length = 137 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDVLINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 + +RITD I ++ Sbjct: 115 NDKFGVRITDIITPSERM 132 >gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 416 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 34/306 (11%), Positives = 81/306 (26%), Gaps = 35/306 (11%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSGKF--S 71 + G G E ++ + + E + +DI+ F Sbjct: 127 MLGGDGVSDLPEDLTEMHLSAISEAMNQMMGAASTSLSEMLGGKIDITPPKVSRVNFKGD 186 Query: 72 HIIHSFKENF---VFSQASLS---SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + + + S L++ ++G + + + Sbjct: 187 RLDPDIIDPAQEIMCTSFRMRVGNLIDSEIMQILPIEFARKLIDKIMGNTGVSEEVVEQE 246 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+ Q + P E + + Sbjct: 247 APPVQEQ-------------------PQQAAPPIQEVPQAPPVMPPQEQYQAPPPQYYQA 287 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQN-KSENQSEDLIDPFARKTYQLNVNIDT 244 + + + + S S + + + I Sbjct: 288 PPPQYYQAPPMPMQYEQMPSQQSVRVQQAQFSSFDSLAMSNIQVPENMDLIKDVMLQITV 347 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + +++ K G V+ + ANGK+I + E+ + +NY IRITD + Sbjct: 348 ELGKTVKPINEILDFKPGSVLELDKVVGESLDILANGKKIATGEVVVIDENYGIRITDIV 407 Query: 305 NFDQKS 310 D++ Sbjct: 408 KPDKRL 413 >gi|74101638|gb|AAZ99728.1| FliML [Aeromonas hydrophila] Length = 291 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 31/307 (10%), Positives = 81/307 (26%), Gaps = 43/307 (14%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K + + R K + + + ++F C+ Sbjct: 20 KTLPHYDLLGVER--ADREQLKQVNAQLGTFSLQAAGCMAQLFNS----------ADCE- 66 Query: 68 GKFSHIIH--SFKENFVFSQASLS-SWSSN--FFIGCSNNLVITLLENLLGASHETIPQL 122 + I S +++ + + S +++ L G S + Sbjct: 67 LTYQEFIAVSSPEDDDGLIWIEARSPLDTQRVVYFSISPSVIYRLAVLFFGGSLRNQEET 126 Query: 123 YN--RSLSTVEKKLAKRTIAQISAVLNQCIS-TTQESSPNLEDFYDIDYLKKNTNRLSNE 179 + + L+ E++L R + + C+ E L + + Sbjct: 127 VSHSKGLTDTEQRLVLRLCQYQVDIWSSCLGLGDLEWQLTLITCDALPVSRL-------- 178 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 ++ + + + L+ P +T + + + Sbjct: 179 WMAAATLTVGSFSHGWQLWLVPPA---ERTGPAVGHTLQD---------GALEQALAHIP 226 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + TL D+ LK+G V+ E A + +S + + + Sbjct: 227 ARLRVVMGQLSMTLADLECLKVGDVLSLDLPEVVPA--LIGNRPCFSGRIAEHKGSLVYQ 284 Query: 300 ITDRINF 306 + + Sbjct: 285 VATVVEE 291 >gi|313620056|gb|EFR91570.1| flagellar motor switch protein [Listeria innocua FSL S4-378] Length = 398 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/284 (9%), Positives = 83/284 (29%), Gaps = 26/284 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 116 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 174 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 175 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 234 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 235 NFGDTMIQKNIAEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 294 Query: 223 ---------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 + ++ + + + V ++ K L+ ++ Sbjct: 295 EATPVEIMAHETKEPAQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCE 354 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 355 KDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 398 >gi|16799783|ref|NP_470051.1| flagellar motor switch protein [Listeria innocua Clip11262] gi|16413160|emb|CAC95940.1| lin0708 [Listeria innocua Clip11262] Length = 513 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/284 (9%), Positives = 83/284 (29%), Gaps = 26/284 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIAEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409 Query: 223 ---------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 + ++ + + + V ++ K L+ ++ Sbjct: 410 EATPVEIKEHETKEPAQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCE 469 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 KDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 513 >gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis DSM 12885] gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis DSM 12885] Length = 287 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 35/78 (44%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + T+++++ + G V+ L NG+ I E+ + Sbjct: 206 DLVLDVPLQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVI 265 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ IRITD ++ ++ Sbjct: 266 DENFGIRITDIVSPGERL 283 >gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K] gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans 2CP-1] gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K] gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans 2CP-1] Length = 97 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 ++ D + + ++ + + T++D++ L G VI Sbjct: 1 MEAQTPRNGDSTRRL-DMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLD 59 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG+ + E V + +RITD ++ ++ Sbjct: 60 ILVNGRLVARGEAVVVNDKFGVRITDIVSPQERI 93 >gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon 786 str. D14] gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon 786 str. D14] Length = 415 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + +KD++ L G +I + N K I E+ + Sbjct: 334 NLLMDIPLKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVI 393 Query: 293 GKNYTIRITDRINFDQKSLK 312 +N+ +R+TD ++ + K Sbjct: 394 DENFGVRVTDIVSQWDRIQK 413 Score = 73.5 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 18/194 (9%), Positives = 60/194 (30%), Gaps = 2/194 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ VDI+ S F + + Sbjct: 38 QDALGEIGNITFGSAATALSTLLNKKVDITTPKVSVITRSQFEAEFPKPHVAIHVQYVDG 97 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + +LG + + N + ++ + + + ++ Sbjct: 98 FEGMNSLVIKTRDAQVIADLMLGGEGDPAEEELNEIHISAVQEAMNQMMGSSATSMSTIF 157 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D ++ ++ ++ + I+ +TI + + S+ + ++ + + Sbjct: 158 NRFVNISPPGVDILNMSNGNGLSSLPESDPLIKISFRLTIGDLIDSTIMQLLTVKFAKEM 217 Query: 210 TLISLSSQNKSENQ 223 +S N Sbjct: 218 VDSLISGSTAETNA 231 >gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio acidaminovorans DSM 6589] Length = 375 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V I + + T+ +++ + G V+ + NGK I E+ + Sbjct: 293 DLISDIPVRITVELGRTRKTIGEILNMSPGSVVELNRMAGEPVDVLVNGKLIARGEVVVI 352 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +R+T+ ++ ++ Sbjct: 353 DENFGVRVTEIVSRAERI 370 >gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073] gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972] gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1] gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1] gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073] gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972] gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1] gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1] gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972] gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1] Length = 137 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G] gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180] gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357] Length = 134 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 112 ADKYGVRITDIITPSERM 129 >gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 134 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 112 ADKYGVRITDIITPSERM 129 >gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae] Length = 139 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K ++ L G V+ + NG I E+ V Sbjct: 59 IMDIPVKLTVELGRTKMTIKKLLNLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 118 Query: 295 NYTIRITDRINFDQKS 310 Y IRITD I ++ Sbjct: 119 KYGIRITDIITPSERM 134 >gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda] Length = 134 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 52 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVV 111 Query: 293 GKNYTIRITDRINFDQKS 310 + +RITD I ++ Sbjct: 112 NDKFGVRITDIITPSERM 129 >gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536] gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11] gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str. E2348/69] gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39] gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026] gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412] gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354] gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli FVEC1302] gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1] gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101] gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75] gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536] gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11] gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN [Escherichia coli O127:H6 str. E2348/69] gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia coli IAI39] gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia coli UMN026] gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82] gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412] gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354] gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli FVEC1302] gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1] gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101] gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75] gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str. NRG 857C] gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3] gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327] gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2] gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1] Length = 137 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739] gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739] Length = 137 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A] gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5] gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A] gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5] Length = 137 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|317051534|ref|YP_004112650.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] gi|316946618|gb|ADU66094.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] Length = 330 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 34/329 (10%), Positives = 92/329 (27%), Gaps = 43/329 (13%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 + +GD + S + L ++ +++ + + + Sbjct: 1 MLNMVGDSEDDGPDLSDFSRIVVSNLSSSMGTSINNPLEMQVAGEGMVS-GDALGAEPQV 59 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 + + F+ ++ ++ ++ + L L + + Sbjct: 60 ILSRVPFEEGATGTMFLVAPISMASIFVDLMMMGEGTAKDSMEEDDLDAYS-DLLNTSFS 118 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI-ENVASSFVL 199 LN+ + D + L +E + + +++ V + L Sbjct: 119 SCVVPLNEAAQGV-KFRFASVSSSVFDQDSLAS-ALGDESLYRLEISVNAPGKVDGTLQL 176 Query: 200 IIPQETLLKTTLISLSSQNKSENQS----------------------------------- 224 +IPQ + + ++ S+ Sbjct: 177 LIPQTLAQEISSAFSEQESASDGDDLFDFSDVDLENLAADDSSADFGGFDSGGGGGGAGS 236 Query: 225 -EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + +++ + RI K LKD++ L G ++ + L N Sbjct: 237 SSLNKEQMRNIEMLLDIDLAVIIRIGSTKIYLKDLLKLGSGSIVELDKKAGDPVELVVNK 296 Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKS 310 K I E+ + N+ +RI + ++ + Sbjct: 297 KVIARGEVVVIDANFGLRINEILSKRDRL 325 >gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99] gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99] Length = 133 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 51 DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 111 ADKYGVRITDIITPSERM 128 >gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1] gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1] Length = 164 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 43/101 (42%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 Q + +E I + + +N++ + +++++ L G V+ Sbjct: 53 EAPPQEQVAEKKVTERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELDRE 112 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + NGK I EL VG+ + +RIT+ + ++KS+ Sbjct: 113 TTEPVDIKVNGKLIAKGELVVVGEKFGVRITEIYSEERKSV 153 >gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863] gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509] gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v] Length = 137 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163] Length = 138 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 116 ADKYGVRITDIITPTERM 133 >gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702] gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702] Length = 419 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/309 (10%), Positives = 81/309 (26%), Gaps = 30/309 (9%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK---FSHIIHSFKENFV 82 D+ I +S + E + + +DIS + + + ++++ + Sbjct: 105 FDELNISAVSEVMNQ-MMGASSTALSEFLGMGIDISTPTPYILSEINIAD-LQNYEQTDM 162 Query: 83 FSQASLSSW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + S F +L TL + ++G + P + + Sbjct: 163 VAAINFDLTIDGVIKSEFISVLDIDLAATLADRMIGGATSPEPIATEPAPAPAPAPQPVP 222 Query: 138 TIAQISAVL----------NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + + + + V +M Sbjct: 223 QAEPVPQAATVQQAAPVQQATPMPQVAPVQQAAAPVPQATPMPQVAPVPQVAPVPQADMY 282 Query: 188 MTIENVASSFVLII---------PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 + PQ + +N + + + Sbjct: 283 AQQGYYGYPNPAMYGQPVQPVMQPQPAVNYRNAQLAQFENFEAPLGSEQKENLQ-LLMDV 341 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + I I K +KD++ G +I + + NG I ++ + N+ + Sbjct: 342 PLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAV 401 Query: 299 RITDRINFD 307 RIT+ + Sbjct: 402 RITEIVKSK 410 >gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89] gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1] gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88] gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA] gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89] gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1] gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia coli S88] gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA] gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034] gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146] gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3] gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252] gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263] Length = 137 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421] gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421] Length = 377 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + +KD++ + G +I + N K I E+ + + Sbjct: 299 IMDVYMEVTVELGRTRMIIKDILGMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVIDE 358 Query: 295 NYTIRITDRINFDQKSLK 312 N+ +R+T+ ++ ++ Sbjct: 359 NFGVRVTEILSPVERIAD 376 >gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185] gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont] Length = 136 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 54 DLIMDIPVKLTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQGEVVVV 113 Query: 293 GKNYTIRITDRINFDQ 308 Y +RITD I + Sbjct: 114 NDKYGVRITDIITPSE 129 >gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC 35316] gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC 35316] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 134 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 112 ADKYGVRITDIITPSERM 129 >gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC BAA-895] gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|313624702|gb|EFR94658.1| flagellar motor switch protein [Listeria innocua FSL J1-023] Length = 398 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 27/284 (9%), Positives = 83/284 (29%), Gaps = 26/284 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 116 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 174 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 175 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 234 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 235 NFGDTMIQKNIAEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 294 Query: 223 ---------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 + ++ + + + V ++ K L+ ++ Sbjct: 295 EATPVEIMEHETKEPEQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCE 354 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 355 KDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 398 >gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605] gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206] gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15] gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86] gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605] gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10] gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar Microtus str. 91001] gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua] gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125] gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1] gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92] gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A] gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. India 195] gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10] gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar Microtus str. 91001] gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua] gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92] gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125] gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. India 195] gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A] gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004] gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038] gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 138 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 116 ADKYGVRITDIITSSERM 133 >gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617] Length = 133 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 51 DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 111 ADKYGVRITDIITPTERM 128 >gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96] gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96] Length = 133 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 51 DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 111 ADKYGVRITDIITPTERM 128 >gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1] gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1] Length = 136 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 54 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 113 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 114 ADKYGVRITDIITPSERM 131 >gi|38639350|gb|AAR25816.1| BcscQ [Burkholderia multivorans E243] Length = 383 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 75/291 (25%), Gaps = 19/291 (6%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 L P+ G D I ++L L + V++ + H Sbjct: 100 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 158 Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 F W + + + + AS P + + Sbjct: 159 AS---PAALRFELRRADGAWRCHGALLFDGPDALAV----FFASAPAAPPDAAALYANLP 211 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +E + + + I Sbjct: 212 VPLAFELGRTALTAAELA-DVVAGDIIAIEHWRAHEQDLLCVAYVRAAPAWEITGRPAGN 270 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + + +P L S S+ ++ R L V++ + Sbjct: 271 RLTVQRIREMP---LEPPRTDSASAAAPDAPPADT-----PRSLDGLAVDLRFELPPTSM 322 Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 L ++ TL+ G VI H L ANG I + +L VG+ +R+ Sbjct: 323 PLGELGTLQPGAVIELSHGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 373 >gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 EDL933] gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. Sakai] gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS] gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4113] gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4401] gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4501] gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4486] gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4196] gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4076] gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC869] gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC508] gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94] gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A] gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22] gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019] gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171] gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1] gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4024] gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4206] gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4045] gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4042] gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4115] gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11] gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14588] gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1] gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a] gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989] gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14359] gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B] gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN [Escherichia coli O103:H2 str. 12009] gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN [Escherichia coli O26:H11 str. 11368] gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN [Escherichia coli O111:H- str. 11128] gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. FRIK2000] gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN [Escherichia coli O157:H7 str. FRIK966] gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str. CB9615] gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088] gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7] gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1] gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1] gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1] gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1] gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1] gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1] gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1] gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1] gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1] gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W] gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7] gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143] gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271] gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280] gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591] gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299] gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction [Escherichia coli O157:H7 str. EDL933] gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. Sakai] gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS] gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94] gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4196] gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4113] gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4076] gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4401] gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4486] gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4501] gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC869] gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC508] gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A] gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22] gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019] gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171] gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1] gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4206] gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4045] gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4042] gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4115] gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli] gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11] gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14588] gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia coli 55989] gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia coli IAI1] gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia coli ED1a] gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. TW14359] gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN [Escherichia coli O26:H11 str. 11368] gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN [Escherichia coli O103:H2 str. 12009] gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN [Escherichia coli O111:H- str. 11128] gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042] gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str. CB9615] gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088] gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1] gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1] gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1] gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1] gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1] gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1] gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1] gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7] gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1] gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1] gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W] gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7] gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407] gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia coli W] gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1] gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC 74-1112] gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC1212] gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B] gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. G5101] gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str. USDA 5905] gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. LSU-61] gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14] gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010] gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68] gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11] gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520] gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482] gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120] gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489] gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007] gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3] gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167] gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. 1044] gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. 1125] gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143] gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271] gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280] gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591] gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299] gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82] gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi] gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252] gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252] Length = 293 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 33/296 (11%), Positives = 89/296 (30%), Gaps = 33/296 (11%) Query: 39 GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98 ++ L + + ++ ++ + + + ++ + V AS ++ IG Sbjct: 10 LEATREALQQFLQTLLNQELTLELGTPATITTDQ-LNELAGDRVLIWASSEPFA----IG 64 Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158 + + + L + +LG + + + L +A + + L E S Sbjct: 65 LTPDWIPLLSQAMLGEALNPGDEGTDDLLGE----VAAQGYGTLRNALAAEGVRLPEVSF 120 Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET------------- 205 ++ + + + + I + +++P Sbjct: 121 VVQQPGSGAAQPPVEL---PDSLLQLPFTLQIGDTRHEGFILLPPSVTQQPTSRAPKATA 177 Query: 206 -------LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 ++ S + + + I + ++ L DV+ Sbjct: 178 AGAAEQAAVEVRPASFGELGPERIGDGGVKGNL-ELLADVELEIVVELGRRRLPLADVLR 236 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 L G +I + ANG+ I E + + + +RIT + ++ K Sbjct: 237 LTTGSIIELEKLVGEPLEIYANGRLIAEGEAVVIDEQFGVRITSLVTGSRQREKAL 292 >gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131] gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131] Length = 138 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 56 DMIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 NY IRITD I ++ Sbjct: 116 SDNYGIRITDIITPSERM 133 >gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004] gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus bovienii SS-2004] Length = 135 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K ++ L G V+P + NG I E+ V Sbjct: 53 DLIMDIPVKLSVELGRTKMTIKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVVVV 112 Query: 293 GKNYTIRITDRINFDQKS 310 Y IRITD I ++ Sbjct: 113 SDKYGIRITDIITPSERM 130 >gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70] gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70] Length = 134 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 112 ADKYGVRITDIITPSERM 129 >gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168] gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2] gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM 6725] gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor bescii DSM 6725] Length = 378 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 82/293 (27%), Gaps = 55/293 (18%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF----SHIIHSFKENFVFSQ 85 + I ++ ++L +DI+ F +I K + Sbjct: 129 QLSAIQEAMNQ-MVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVK 187 Query: 86 ASLSSWSS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE---KKLAKR 137 + + L++ +L + T Q + + E +++ ++ Sbjct: 188 VAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETVKEEVLRQ 247 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 T +Q + + P + ++ N Sbjct: 248 TSSQTTKSQKKASQP-----PYTPPPQRKEQPQQVYNVSP-------------------- 282 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 + ++ E + + + + I + + +++++ Sbjct: 283 ----------------VQFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREIL 325 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +N+ +RITD +N + Sbjct: 326 EFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 378 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 17/236 (7%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 TSP P + + + +G + ++ V+I+ Sbjct: 18 SETSPSSPTI----------SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSI 67 Query: 68 GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYN 124 K+ + F + V + + ++G + E +L Sbjct: 68 LKWDELPKEFPVPYVAIKVVYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTDELTE 127 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVT 182 LS +++ + + S L+ ++ + +P + + + + + Sbjct: 128 LQLSAIQEA-MNQMVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIV 186 Query: 183 TINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 + MTI + + S + +IP + + L + + QSE + Sbjct: 187 KVAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETVKE 242 >gi|145297435|ref|YP_001140276.1| lateral flagellar motor switch protein, LfiM [Aeromonas salmonicida subsp. salmonicida A449] gi|142850207|gb|ABO88528.1| lateral flagellar motor switch protein, LfiM [Aeromonas salmonicida subsp. salmonicida A449] Length = 236 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 30/247 (12%) Query: 68 GKFSHIIH--SFKENFVFSQASLSSW---SSNFFIGCSNNLVITLLENLLGASHETIPQL 122 + I S + + S + S +++ L G S + Sbjct: 12 LTYQEFIAVSSPEHDDGLIWVEARSLLDTQRVAYFSISPSVIYRLAVLFFGGSLRNQGET 71 Query: 123 YN--RSLSTVEKKLAKRTIAQISAVLNQCIS-TTQESSPNLEDFYDIDYLKKNTNRLSNE 179 + + L+ E++L R + + C+ E L + + Sbjct: 72 ASHSKGLTDTEQRLVLRLCQYQVDIWSSCLGLGDLEWQLTLITRDVLPVSRL-------- 123 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 ++ + + + L+ P E+ +L + + Sbjct: 124 WMAAATLTVGSFSHGWQLWLVPPAESTGPAAGHALQ------------DGTLEQALTHIP 171 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + TL D+ LK+G V+ E A + +S + + + Sbjct: 172 TRLRVVMGQLSMTLADLECLKVGDVLSLDLPELVPA--LIGNRPCFSGRIAEHKGSLVYQ 229 Query: 300 ITDRINF 306 + + Sbjct: 230 VATVVEE 236 >gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans SRS30216] gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans SRS30216] Length = 249 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 16/185 (8%) Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFY-----------DIDYLKKNTNRLSNEFVT 182 + + T+ + + P LE + +++++ V Sbjct: 67 VGEETLNTLLMSPEGALDPVDALRPALETVVHALGQCTLEAGVEGDPAQALSQIADGAVA 126 Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 I+ + + P T + + + +++ Sbjct: 127 VIDAGGETLALIGLTLTAQPDTTPAPMPSFAPAGTPAPAGP-----RRTMDLLRDVQMDV 181 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + T++D++ L G V+ + A + NG+ I E+ V ++Y IRIT+ Sbjct: 182 TVELGRTSMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVVVVDEDYAIRITE 241 Query: 303 RINFD 307 + + Sbjct: 242 IVTPE 246 >gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70] gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71] Length = 134 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 112 ADKYGVRITDIITPSERM 129 >gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM 2489] gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM 2489] Length = 408 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + K T+KD++ L G +I + N K I E+ + Sbjct: 327 NLIMDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVNHKPIAKGEVVVI 386 Query: 293 GKNYTIRITDRIN 305 +N+ +R+T+ + Sbjct: 387 DENFGVRVTEILP 399 >gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827] gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827] Length = 138 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 56 NLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 NY IRITD I ++ Sbjct: 116 SDNYGIRITDIITPSERM 133 >gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638] gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|239909253|ref|YP_002955995.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1] gi|239799120|dbj|BAH78109.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1] Length = 186 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 38/101 (37%) Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 +++ Q D I + +++ + K + +++ L G VI Sbjct: 82 KAKFKDMTPEAKAQRPDNIRRDLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNK 141 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK + E + + + +R+TD I+ ++ Sbjct: 142 LAGEPLEIYVNGKLVARGEAVVINEKFGVRLTDIISPIERV 182 >gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli] gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str. 493-89] gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str. H 2687] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM 20603] gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM 20603] Length = 259 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 6/107 (5%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P T + + + R Y + + + I K ++ V+ L Sbjct: 156 PSPTEPEIRPFTPPMMGSGTGDDKL------RLLYDVEMTLTVEIGRAKLPVRQVLDLTP 209 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G ++ A L NG + E+ V ++Y +R+T+ I+ + Sbjct: 210 GSIVELDRVAGAPADLLVNGHLVARGEVVVVDEDYGLRVTEIIDTTE 256 >gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. W3110] gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli] gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia coli str. K12 substr. W3110] gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1] gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 137 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|325981183|ref|YP_004293585.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212] gi|325530702|gb|ADZ25423.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212] Length = 180 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 98 DLILDIPVQMTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 157 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 158 NDKFGIRLTDIITPSERIRK 177 >gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1] gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1] Length = 137 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC BAA-2158] Length = 133 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 51 DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 111 ADKYGVRITDIITPTERM 128 >gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 137 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718] gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718] Length = 137 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|301165894|emb|CBW25467.1| flagellar motor switch protein FliN [Bacteriovorax marinus SJ] Length = 131 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVV 257 P + +S + +D ++ + + + + + + +KD++ Sbjct: 15 PMANVEDINTARVSQLSDEIKAGDDALNKLKVQNLDFILDIPLKVTVELGRTEVMIKDLL 74 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L G V+ + NGK + E+ V + + IR+TD I+ ++ Sbjct: 75 QLGQGSVLELDKLAGEPLEILVNGKLVAKGEVVVVNEKFGIRLTDIISPIERI 127 >gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74] Length = 134 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 112 ADKYGVRITDIITPSERM 129 >gi|146282918|ref|YP_001173071.1| flagellar motor switch protein [Pseudomonas stutzeri A1501] gi|145571123|gb|ABP80229.1| flagellar motor switch protein FliN [Pseudomonas stutzeri A1501] Length = 193 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + + ++++++ L G V+ + NG I E+ V + Sbjct: 114 ILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVVVVNE 173 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 174 KFGIRLTDVISPTERIKK 191 >gi|258511385|ref|YP_003184819.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478111|gb|ACV58430.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 381 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 37/346 (10%), Positives = 91/346 (26%), Gaps = 68/346 (19%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + +G + + VDI+ S + F +V Q Sbjct: 36 ADEIDVLGEIGNICFGSAATSLSSLLGRRVDITTPVVSILPRSEVESRFPTPYVLVQVDF 95 Query: 89 -SSWSSNFFIGC---SNNLVITLL-------------ENLLGASHETIPQLYNRSLSTVE 131 + + L+ E L A E + Q+ + + + Sbjct: 96 TEGLQGTNALAIEIEDARRIADLMMGREPSESTGELGELELSAVGEAMNQMMGSAATAMS 155 Query: 132 KKLAK---------RTIAQISAVLNQCISTTQESSPNLEDFYDID-----YLKKNTNRLS 177 + + R + +E + + ++ + Sbjct: 156 QLFGRYINISPPSVRVVTFTPDEAQAAFGPAEELVNVEFRLHVHELIDSHIMQLMPIPFA 215 Query: 178 NEFVTTINMNMT---------IENVASSFVLIIPQETLLKTTLI---------------- 212 E V ++ ++ E P + Sbjct: 216 RELVRSMQVHTDAIVPEPREGDERRDGDA----PVSAGAEARGKNRDDAQAANRGREDEG 271 Query: 213 ------SLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + E + P A Y + +N+ + K +++++ L G + Sbjct: 272 PSVAVRRPAFPDFDEGVTPRDARPVANLSLLYDVPLNVTVELGRAKKLIREILELAPGSI 331 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + N K+I E+ + +N+ +R+TD + D++ Sbjct: 332 LELDKLAGEPVDIYVNQKKIAIGEVVVIDENFGVRVTDIVQADKRI 377 >gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301] gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 2457T] gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401] gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301] gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 2457T] gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401] gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017] gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str. 2457T] gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71] gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671] gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218] gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272] gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304] gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227] Length = 137 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032] gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032] Length = 154 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 72 NLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 132 ADKYGVRITDIITPSERM 149 >gi|283853449|ref|ZP_06370693.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B] gi|283571169|gb|EFC19185.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B] Length = 190 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 37/93 (39%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +++ + + + +++ + K + +++ L G VI + Sbjct: 94 QEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEI 153 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK + E + + + +R+TD I+ ++ Sbjct: 154 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 186 >gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC 27405] gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC 27405] Length = 406 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 32/303 (10%), Positives = 82/303 (27%), Gaps = 25/303 (8%) Query: 21 LTGKLGDKKTIEKI---SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII 74 + G G K E S++ + + + +DIS + Sbjct: 116 MMGGDGSNKEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAV 175 Query: 75 HSFKEN-------FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + F S + ++ N++ + E + + Sbjct: 176 PEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEEVAA 235 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S V++ +A + Q Q + Y Y + + + Sbjct: 236 SAVQEPVAGQHNEQYYHAQPSQQPYQQPPQQPYQQPYQQPYHQPYQQQYQQYYQPYEQPP 295 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + + + + + + + + + + Sbjct: 296 RQNDGYRNPINV------------QPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELG 343 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +KD++ G +I + NGK I E+ + +++ +RITD ++ Sbjct: 344 RTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPS 403 Query: 308 QKS 310 ++ Sbjct: 404 KRL 406 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 19/228 (8%), Positives = 59/228 (25%), Gaps = 11/228 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G S N + +G + + V I Sbjct: 14 LNGSSSEGN---------EENSANEELTSQEIDALGEIGNISMGTSATTLNSLLGQRVVI 64 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + + ++V + + + + + ++G Sbjct: 65 TTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKEDDAKVITDLMMGGDGSNK 124 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 + + + I + ++ + + SP +D + Sbjct: 125 EGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAVPEAEFPRGD 184 Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 + + M I + S + ++P + K ++S+ + E+ Sbjct: 185 KIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEE 232 >gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM 4541] gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM 4541] Length = 138 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 56 DLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 NY IRITD I ++ Sbjct: 116 SDNYGIRITDIITPSERM 133 >gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 32953] gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 32953] gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] Length = 138 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 116 ADKYGVRITDIITPSERM 133 >gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans C54] Length = 100 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 16 DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 75 Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318 Y IR+TD I ++ + ++R Sbjct: 76 EDKYGIRLTDIITPSER-INRLNNRR 100 >gi|224498782|ref|ZP_03667131.1| flagellar motor switch protein [Listeria monocytogenes Finland 1988] Length = 515 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + V ++ K L+ ++ Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515 >gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC 35469] gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia fergusonii ATCC 35469] gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253] gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227] Length = 137 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC BAA-894] gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894] Length = 154 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 72 NLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 132 ADKYGVRITDIITPSERM 149 >gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kronotskyensis 2002] Length = 378 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 30/293 (10%), Positives = 82/293 (27%), Gaps = 55/293 (18%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF----SHIIHSFKENFVFSQ 85 + I ++ ++L +DI+ F +I K + Sbjct: 129 QLSAIQEAMNQ-MVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVK 187 Query: 86 ASLSSWSS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE---KKLAKR 137 + + L++ +L + T Q + + E +++ ++ Sbjct: 188 VAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETLKEEVLRQ 247 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 T +Q + + + + ++ N Sbjct: 248 TFSQTTKSQKKASQPSY-----TPPPQRTEQPQQVYNVSP-------------------- 282 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 + ++ E + + + + I + + +++++ Sbjct: 283 ----------------VQFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREIL 325 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +N+ +RITD +N + Sbjct: 326 EFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 378 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 17/236 (7%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 TSP P + + + +G + ++ V+I+ Sbjct: 18 SETSPSSPTI----------SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSI 67 Query: 68 GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYN 124 K+ + F + V + + ++G + E +L Sbjct: 68 LKWDELPREFPVPYVAIKVVYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTDELTE 127 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVT 182 LS +++ + + S L+ ++ + +P + + + + + Sbjct: 128 LQLSAIQEA-MNQMVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIV 186 Query: 183 TINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 + MTI + + S + +IP + + L + + QSE + Sbjct: 187 KVAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETLKE 242 >gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012] gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012] Length = 137 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|303246796|ref|ZP_07333073.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans JJ] gi|302491813|gb|EFL51693.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans JJ] Length = 202 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 37/93 (39%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +++ + + + +++ + K + +++ L G VI + Sbjct: 106 QEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEI 165 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK + E + + + +R+TD I+ ++ Sbjct: 166 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 198 >gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. enterocolitica 8081] gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica W22703] Length = 138 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 116 ADKYGVRITDIITPSERM 133 >gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F] gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F] Length = 138 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 116 ADKYGVRITDIITSSERM 133 >gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum SCRI1043] gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum SCRI1043] Length = 137 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 SDKYGVRITDIITPSERM 132 >gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium carboxidivorans P7] gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans P7] gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium carboxidivorans P7] gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans P7] Length = 406 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++I + K +KD++ L G +I + + NGK + E+ V Sbjct: 325 DLILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAYGEVVVV 384 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +RIT I+ +++ Sbjct: 385 DENFGVRITSIISSEERI 402 Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 62/225 (27%), Gaps = 9/225 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S TS P + + +G + ++ V+I+ Sbjct: 27 SEETKTSEETPETSNE-SELPALTDIERDLLGEIGNISMGSASTALSTIINQQVNITTPI 85 Query: 65 CQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123 + + F+ +S + + ++G Sbjct: 86 VTITRLKDLKDQFEVPNVALEVKYVSGIVGENLLVMKITDAAVIANLMMGGDGNVEG--D 143 Query: 124 NRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 + LS +E + I + + SP + ++ +E Sbjct: 144 PKELSEIELSAVSEAMNQMIGSAATSMATMFMREVNISPPVSTIWNDLKSPVAKGISEDE 203 Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQ 223 + ++ ++ I + V S+ + I+P T K I + ++ Sbjct: 204 PIIKVSFSLAIGDLVDSTIMQILPIATAKKIVSIMMGQESPEGEA 248 >gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905] Length = 137 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Coprothermobacter proteolyticus DSM 5265] gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Coprothermobacter proteolyticus DSM 5265] Length = 287 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + VN+ + + ++KD+++L G +I + NGK I E+ + Sbjct: 206 ELLLDVKVNVSVELGRSRVSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVI 265 Query: 293 GKNYTIRITDRINFDQKSLKNF 314 +++ +RI D I ++ Sbjct: 266 DESFGVRILDIIAPKERLKAEL 287 >gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484] gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484] Length = 125 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 40/95 (42%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 ++ + R+ ++ + ++ I L +++ L G V+ + ++ Sbjct: 27 GRHGEGQGDSQDLSEKVRRFLEIPLELEVVIGRTTLKLGELLHLGPGSVVELDNHVESPV 86 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK + E+ V + +RITD I +++ Sbjct: 87 DILVNGKLVAKGEIVVVEDKFGVRITDIIAREERI 121 >gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110] gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110] Length = 155 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + + T+K ++ L G V+ + NG I E+ V Sbjct: 72 ERILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAGQPLDVLINGYLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKSLK 312 + Y IR+TD + ++ K Sbjct: 132 NEKYGIRLTDIVTPSERMQK 151 >gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627] gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627] Length = 137 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|260222422|emb|CBA31970.1| Flagellar motor switch protein fliN [Curvibacter putative symbiont of Hydra magnipapillata] Length = 162 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 81 VLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 140 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 141 KFGIRLTDVVTPSERL 156 >gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum BKT015925] gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum BKT015925] Length = 417 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 37/78 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + I + K ++KDV+ L G +I + + NGK+I E+ V Sbjct: 335 DLILDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVV 394 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +RI + ++ +++ Sbjct: 395 DENFGVRIVNIVSGEERV 412 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 73/232 (31%), Gaps = 12/232 (5%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLDVDI 60 +SI +NT L + + K + + +G + + V+I Sbjct: 35 ESIEENTQVLENTENVENIEESSEDKITDIEMDLLGEIGNISMGSASTALSTIIGSAVNI 94 Query: 61 SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + +F+ S + + ++G Sbjct: 95 TTPQVRVTTLKELRDTFEVPNIALEVKYTSGIIGGNLLVMKIPDAAVIANLMMGGDGRIE 154 Query: 120 PQLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 + L+ +E+ + I + + S SP + + + + Sbjct: 155 EKS---ELTEIEESAVSEAMNQMIGSAATSMATMFSREVNISPPVSKIWKDNSMPLCETI 211 Query: 176 LSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 +E + ++ +TI + V S+ + I+P +T K I + + K E + Sbjct: 212 KEDEDIIEVSFKLTIGDLVDSNIMQILPIKTAKKIVSIMMGQEEKGEAVEQS 263 >gi|187478202|ref|YP_786226.1| flagellar motor switch protein [Bordetella avium 197N] gi|115422788|emb|CAJ49316.1| flagellar motor switch protein [Bordetella avium 197N] Length = 172 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 88 DLVMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 147 Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318 + Y IR+TD I ++ + ++R Sbjct: 148 EEKYGIRLTDIITPSER-INRLNNRR 172 >gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937] gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937] Length = 138 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 116 SDKYGVRITDIITPSERM 133 >gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003] gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003] Length = 124 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 42 DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 101 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 102 ADKYGVRITDIITSSERM 119 >gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 137 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 SDKYGVRITDIITPSERM 132 >gi|220934502|ref|YP_002513401.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7] gi|219995812|gb|ACL72414.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7] Length = 154 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I I + +++++ L G V+ + NG I E+ V + Sbjct: 75 VLDIPVTISMEIGRTRMPIRNLLQLNQGSVVELDRLAGEPLDVYVNGTLIAHGEVVVVNE 134 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 135 KFGIRLTDVISPTERVKK 152 >gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198] gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198] Length = 136 Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 54 NLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 113 Query: 293 GKNYTIRITDRINFDQKS 310 Y IRITD I ++ Sbjct: 114 SDKYGIRITDIITPSERM 131 >gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] Length = 504 Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 26/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 279 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT------------- 210 D + + + + + + P Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398 Query: 211 -----------LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 +++ + ++ + + + V ++ K L+ ++ Sbjct: 399 EATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 459 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 504 >gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586] gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586] Length = 138 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 116 SDKYGVRITDIITPSERM 133 >gi|290893997|ref|ZP_06556972.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|290556443|gb|EFD89982.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] Length = 504 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 279 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + V ++ K L+ ++ Sbjct: 399 EATTPAEIIEPEKSAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 459 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 504 >gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] Length = 504 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 279 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + V ++ K L+ ++ Sbjct: 399 EATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 459 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 504 >gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus nematophila ATCC 19061] gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus nematophila ATCC 19061] Length = 135 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K ++ L G V+ + NG I E+ V Sbjct: 53 DLIMDIPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 112 Query: 293 GKNYTIRITDRINFDQKS 310 Y IRITD I ++ Sbjct: 113 SDKYGIRITDIITPSERM 130 >gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8] Length = 154 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + TLK V+ + G +I + NGK I E+ + Sbjct: 72 ELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVI 131 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +RIT+ ++ ++ Sbjct: 132 DENFGVRITEIVSPKERL 149 >gi|47095266|ref|ZP_00232877.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|47016337|gb|EAL07259.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] Length = 504 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 279 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + V ++ K L+ ++ Sbjct: 399 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 459 CEKDVIILKESMNEPLVLALNGVMIGKGILVRVDDHFGIQMTELVR 504 >gi|293605020|ref|ZP_06687415.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii ATCC 43553] gi|292816589|gb|EFF75675.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii ATCC 43553] Length = 101 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 17 DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 76 Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318 Y IR+TD I ++ + ++R Sbjct: 77 EDKYGIRLTDIITPSER-INRLNNRR 101 >gi|254830309|ref|ZP_05234964.1| flagellar motor switch protein [Listeria monocytogenes 10403S] Length = 515 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGMVQNDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + V ++ K L+ ++ Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515 >gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y4.1MC1] gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y4.1MC1] Length = 395 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K ++++++ L G +I + N K I E+ + + Sbjct: 316 LLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE 375 Query: 295 NYTIRITDRINFDQKSLK 312 N+ +R+TD I+ + K Sbjct: 376 NFGVRVTDIISQSDRLKK 393 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 16/194 (8%), Positives = 57/194 (29%), Gaps = 2/194 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V+I+ S + ++ F Sbjct: 37 QDALGEIGNISFGSSATALSVLLNQKVEITTPSVSIIQRKNVDSEFPLPYVAIQVNYTDG 96 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + +LG + ++ + + + ++ Sbjct: 97 FLGTNLLVIKQEDAAIIADLMLGGDGTNTADELGEIQLSAVQEAMNQMMGSAATSMSTIF 156 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP ++ K + + ++ + I + + S+ + ++P + + Sbjct: 157 GKRVDISPPTLHLLNVREEKGIEYLPNEDVFIKVSFRLKIGDLIDSNIMQLLPVDFAKEL 216 Query: 210 TLISLSSQNKSENQ 223 L S +S + Sbjct: 217 VKQLLHSSGESSGE 230 >gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703] gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703] Length = 136 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 54 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 113 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 114 ADKYGVRITDIITPSERM 131 >gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120] gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120] Length = 514 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 27/285 (9%), Positives = 83/285 (29%), Gaps = 27/285 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLAIQAKEVAEK 409 Query: 223 ----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 + ++ + + + V ++ K L+ ++ Sbjct: 410 ATPPAEIIEPEKPAEPVQPIVVEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWC 469 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 EKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 514 >gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp. MED105] gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp. MED105] Length = 149 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K ++ L G VI + NG I E+ V Sbjct: 67 DMILDIPVQLTVELGRTKIPIKHILQLAQGSVIELDGLAGEPMDVLVNGYLIAQGEVVVV 126 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 127 NDKFGIRLTDIITPSERLRK 146 >gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica Y11] gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 124 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 42 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 101 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 102 ADKYGVRITDIITPSERM 119 >gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes Clip81459] gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175] gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816] Length = 515 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 26/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT------------- 210 D + + + + + + P Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409 Query: 211 -----------LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 +++ + ++ + + + V ++ K L+ ++ Sbjct: 410 EATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515 >gi|254900064|ref|ZP_05259988.1| flagellar motor switch protein [Listeria monocytogenes J0161] gi|254911383|ref|ZP_05261395.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] gi|254935710|ref|ZP_05267407.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|258608293|gb|EEW20901.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|293589320|gb|EFF97654.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] Length = 515 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + V ++ K L+ ++ Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 CEKDVIILKESMNEPLVLALNGVMIGKGILVRVDDHFGIQMTELVR 515 >gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99] gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220] gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 515 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + V ++ K L+ ++ Sbjct: 410 EATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515 >gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6] gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6] Length = 153 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + +K+++ L G V+ + NG I E+ V Sbjct: 69 NLILDIPVQLTVELGRTRIPIKNILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 128 Query: 293 GKNYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 129 NDKFGIRLTDIVTPSERM 146 >gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 156 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 Q ++ D + V + + + +++++ L G V+ + Sbjct: 62 QAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 121 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NG I E+ + + IR+TD ++ ++ Sbjct: 122 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 152 >gi|292493589|ref|YP_003529028.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4] gi|291582184|gb|ADE16641.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4] Length = 152 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + I + +++D++ L G V+ + NG I E+ V Sbjct: 71 DLILDIPVTMAMEIGRTRISIRDLLKLNRGSVVELERLAGEPLDVLVNGCLIAHGEVVVV 130 Query: 293 GKNYTIRITDRINFDQKSLK 312 + + IR+TD I+ ++ K Sbjct: 131 NEKFGIRLTDVISTTERVRK 150 >gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM 12168] gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM 12168] Length = 396 Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K +K+++ + G +I + N K I E+ + + Sbjct: 319 IMDVYMEMTVELGRTKKQIKEILGMGEGTIIELDKLAGEPVDILVNHKPIAKGEVVVIDE 378 Query: 295 NYTIRITDRINFDQKS 310 N+ +R+T+ ++ ++ Sbjct: 379 NFGVRVTEILSPIERV 394 >gi|153840527|ref|ZP_01993194.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] gi|149745811|gb|EDM56941.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] Length = 168 Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 10/100 (10%), Positives = 23/100 (23%), Gaps = 6/100 (6%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 R+ + + + + + ++S Q KF Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112 ++ + I LV L++ L Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVDKFL 130 >gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] Length = 126 Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + +L++++ + G V+ L NG+ + E+ +G+ Sbjct: 49 LADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGE 108 Query: 295 NYTIRITDRINFD 307 NY IRIT+ IN + Sbjct: 109 NYGIRITELINPE 121 >gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591] gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591] Length = 138 Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 116 SDKYGVRITDIITPSERM 133 >gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] Length = 515 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + V ++ K L+ ++ Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515 >gi|269836615|ref|YP_003318843.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM 20745] gi|269785878|gb|ACZ38021.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM 20745] Length = 144 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 30/76 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +K ++ L+ G V+ + N I E+ V + Sbjct: 66 LRDVEVELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDE 125 Query: 295 NYTIRITDRINFDQKS 310 + +R+ + + +++ Sbjct: 126 KFAVRVVEIVPPERRL 141 >gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561] gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28] gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e] gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] Length = 515 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + V ++ K L+ ++ Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515 >gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320] gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320] gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] Length = 136 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 54 NLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 113 Query: 293 GKNYTIRITDRINFDQKS 310 Y IRITD I ++ Sbjct: 114 SDKYGIRITDIITPSERM 131 >gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM 30120] gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM 30120] Length = 138 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 56 DMIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 NY IRITD I ++ Sbjct: 116 SDNYGIRITDIITPSERM 133 >gi|218887303|ref|YP_002436624.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758257|gb|ACL09156.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 180 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 37/93 (39%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++++ D + +++ + + + +++ L G V+ + Sbjct: 84 EEAKSPRPDSGRRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEV 143 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK + E + + + +R+TD I+ ++ Sbjct: 144 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 176 >gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] Length = 124 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 42 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 101 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 102 ADKYGVRITDIITPSERM 119 >gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656] gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656] gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1] Length = 404 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 28/291 (9%), Positives = 84/291 (28%), Gaps = 40/291 (13%) Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 S++ + + ++ +DIS + + ++ E Sbjct: 129 LSAISEAMNQMMGSSATSLSSMLNRTIDISPPIAEVV---DLKNTLNEG----------- 174 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + L ++ E + + + K +S + Sbjct: 175 ------EIDSFLSEEFVKISF--HMEIGDLVDSEIMQLYPPAFVKEMCKGVSQNMELDTQ 226 Query: 152 TTQESSPNLEDFYD-------------IDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + E P + ++ N+ + NE + NMN Sbjct: 227 SVTEDVPQSSNTATQAAPIQQPQDSGSMNNASANSQGMINENMMNSNMNSQNMMNQGMMN 286 Query: 199 LIIPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + + ++ + + + ++ + + + + K ++ ++ Sbjct: 287 QNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVELGRTKKSISEI 346 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G++I + NGK + E+ + +++ +RIT+ +N Sbjct: 347 LDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNSK 397 >gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis 11-1] gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis 11-1] Length = 109 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G VI + NG I E+ + Sbjct: 30 ILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIELERGAGEPLDVYVNGTLIAHGEVVVIND 89 Query: 295 NYTIRITDRINFDQKS 310 + +R+TD ++ ++ Sbjct: 90 RFGVRLTDVVSPSERI 105 >gi|315648126|ref|ZP_07901227.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus vortex V453] gi|315276772|gb|EFU40115.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus vortex V453] Length = 419 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 33/80 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + +KD++ + G +I + N K I E+ + Sbjct: 338 NLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVI 397 Query: 293 GKNYTIRITDRINFDQKSLK 312 +N+ +R+TD ++ + K Sbjct: 398 DENFGVRVTDIVSQWDRIQK 417 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 20/210 (9%), Positives = 61/210 (29%), Gaps = 2/210 (0%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + + VDI+ K S F + + Sbjct: 42 QDALGEIGNITFGSAATALSTLLGKKVDITTPKVSIIKRSQFEEEFPKPHVAVHVTYVDG 101 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + +LG + + N + ++ + + + ++ Sbjct: 102 FEGINSLVIKTRDAQVIADLMLGGEGNPVEEELNEIHISAVQEAMNQMMGSSATSMSTIF 161 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D D+ + N +E + I+ + I + S+ + ++P Sbjct: 162 NRFVNISPPGIDILDMANGEGVNNLPQDETLIKISFRLIIGELIDSTIMQLLPVHFSKDM 221 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLN 239 + ++ + + ++ Sbjct: 222 VHMLINGTEEPQPAKQEAAPTVEAPVNTQE 251 >gi|238025699|ref|YP_002909930.1| flagellar motor switch protein FliN [Burkholderia glumae BGR1] gi|237874893|gb|ACR27226.1| Flagellar motor switch protein FliN [Burkholderia glumae BGR1] Length = 144 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 62 DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 121 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 122 NDKFGIRLTDIITPSERIRK 141 >gi|149908776|ref|ZP_01897436.1| hypothetical protein PE36_21284 [Moritella sp. PE36] gi|149808050|gb|EDM67991.1| hypothetical protein PE36_21284 [Moritella sp. PE36] Length = 306 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 88/288 (30%), Gaps = 26/288 (9%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYK---KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LG+++ + + + + + + + Y ++ Sbjct: 39 EKYDLLGERRQWTDCLEVINSDLSLAHREIERRLSQLFN---EYEYRITLQKFTHERVNP 95 Query: 77 FKENFVFSQASLSSWSS-NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + + +N ++ TL E LGA+ + + S E +L Sbjct: 96 VDLGTNIIWLQAQNNVGLKVLLSINNAMLYTLTEIFLGAT-KPSNKDNLAQPSDSEYRLL 154 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 KR + L+ +S E + N + +EF + ++ TI+ S Sbjct: 155 KRILTIQLDALDNQLSHHHEWT----------ISHTNQPTIGDEF-ISSTIDCTIKEYLS 203 Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 S+ + P+E + +T + + + ++ + NI+ + + L Sbjct: 204 SWRIWYPKEFINQTLSSNRTKPDYELLAAKLANAA-----TNIPTNINVILAKTQLNLVQ 258 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + LK G I I + +++TD Sbjct: 259 LTQLKSGDFIMMDLP--EIVSACTGNHVIAHGRVVVQSGRLVMQVTDT 304 >gi|330814982|ref|YP_004358687.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3] gi|327367375|gb|AEA58731.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3] Length = 149 Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 67 DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 126 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 127 NDKFGIRLTDIITPSERIRK 146 >gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus DSM 13965] gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus DSM 13965] Length = 132 Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 35/78 (44%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + T+++++ + G V+ L NG+ I E+ + Sbjct: 51 DLLLDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVI 110 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ IRITD ++ ++ Sbjct: 111 DENFGIRITDIVSPGERL 128 >gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio peptidovorans DSM 11002] Length = 384 Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + ++ +V++ G VI + NGK I E+ + + Sbjct: 304 IADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDE 363 Query: 295 NYTIRITDRINFDQKS 310 N+ +R+T+ +N +K Sbjct: 364 NFGVRVTEILNVGEKI 379 >gi|54308124|ref|YP_129144.1| flagellar motor switch protein [Photobacterium profundum SS9] gi|46912550|emb|CAG19342.1| putative polar flagellar switch protein FliN [Photobacterium profundum SS9] Length = 129 Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 ++S S+D + V I + + ++++++ L G V+ Sbjct: 29 LEELVDESTPISDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 88 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127 >gi|313610118|gb|EFR85441.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208] Length = 515 Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 27/286 (9%), Positives = 84/286 (29%), Gaps = 28/286 (9%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + ++ V ++ K L+ ++ Sbjct: 410 ETTTPAEIIEPEKPAESVHQAVIEEKETLSEMEQILEEIPVTLEVVFGTAKVKLEKFISW 469 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI +L+ NG I L RV ++ I++T+ + Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515 >gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 127 Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 2/124 (1%) Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + N + S + + + + + + V + + Sbjct: 3 DMNNSSGSEDKSMDNLWGEALNEQNAAGSTEQTAV-PQFSEEM-NLILDIPVKMTVELGR 60 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 K T+K+++ L G V+ + NG I E+ V + IRITD I + Sbjct: 61 TKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSDKFGIRITDIITPSE 120 Query: 309 KSLK 312 + + Sbjct: 121 RMHR 124 >gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum 5521] gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum 5521] gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4 str. BoNT E BL5262] Length = 412 Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 38/78 (48%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++I + K +++D++ L G +I + + NGK+I E+ V Sbjct: 331 DLIMDVPLDISVVLGRTKKSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALGEVVVV 390 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +RIT+ ++ ++ Sbjct: 391 DENFGVRITNIVSNVERL 408 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 75/248 (30%), Gaps = 5/248 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G+S+ + + + + T + + +G + + ++ V+I Sbjct: 15 LSGESMDSEDRNVSSSSNENMEDAITE--TDKDLLGEIGNISMGSASTALYQLINQQVNI 72 Query: 61 SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + I F+ V ++ + + + ++G + Sbjct: 73 TTPVVSVTTLKEIKEGFETPNIVLDIEYIAGIVGRNILIIKTYDGLVISNLMMGGDGKIT 132 Query: 120 PQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 L + + + I + + + SP + + + + Sbjct: 133 DVHELSELEISAVSEAMNQMIGSAATSMATMFGRKVDISPPTSRVVTDEGTPISESIPED 192 Query: 179 EFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 + + ++ MTI + V S+ + I P +T I +N+ +L + + Sbjct: 193 QPIVKVSFKMTIGDIVDSNIMQIFPIKTAKNIVAIMTGEDVADDNKVGELEEQKDKLIVN 252 Query: 238 LNVNIDTR 245 ++ Sbjct: 253 KEIHTQPE 260 >gi|212637765|ref|YP_002314290.1| hypothetical protein swp_5088 [Shewanella piezotolerans WP3] gi|212559249|gb|ACJ31703.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 308 Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 85/309 (27%), Gaps = 28/309 (9%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + QS + P+ LL + + + + L I ++ + Sbjct: 24 LVKQSNNVEVRPV--ALLKEKLARSRLLIQLTHCQRPMMDAVNELLNPIIRQGHHALSQV 81 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S K I + + L G S + Sbjct: 82 ----VMSAKSDAITPELHHAWFLLSYQRIELGWW---KIDKCTLDQLASGYYG-SFTSAA 133 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R+ S E +L KR + L P + D L+ TN + Sbjct: 134 KSPLRAPSQSEFRLVKRLMLAAINTL-----------PVADIDTDELELELITNTTPIKA 182 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 +N I ++ + + L ++ Q DL D A+ QL Sbjct: 183 PVCCELNFPIAHIGPGIRFYMAEYLL-----GLMAEQPSQYQADPDLNDKLAKSLKQLPF 237 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + + + + LK+G ++P + + I+ + ++ Sbjct: 238 RVMLELGQQSIPVTGLQQLKVGDILPMNLHSRCPVT--VGKRPIFYATVHAHEGQMVAKL 295 Query: 301 TDRINFDQK 309 T ++ Sbjct: 296 TQEAFQTEE 304 >gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629] Length = 404 Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 28/291 (9%), Positives = 84/291 (28%), Gaps = 40/291 (13%) Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 S++ + + ++ +DIS + + ++ E Sbjct: 129 LSAISEAMNQMMGSSATSLSSMLNRTIDISPPIAEVV---DLKNTLNEG----------- 174 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + L ++ E + + + K +S + Sbjct: 175 ------EIDSFLSEEFVKISF--HMEIGELVDSEIMQLYPPAFVKEMCKGVSQNMELDTQ 226 Query: 152 TTQESSPNLEDFYD-------------IDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + E P + ++ N+ + NE + NMN Sbjct: 227 SVTEDVPQSSNTATQAAPIQQPQDSGSMNNASANSQGMINENMMNSNMNSQNMMNQGMMN 286 Query: 199 LIIPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + + ++ + + + ++ + + + + K ++ ++ Sbjct: 287 QNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVELGRTKKSISEI 346 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G++I + NGK + E+ + +++ +RIT+ +N Sbjct: 347 LDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNSK 397 >gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Thermomicrobium roseum DSM 5159] gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Thermomicrobium roseum DSM 5159] Length = 128 Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 34/79 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +K ++ L+ G V+ L+ N I E+ V + Sbjct: 47 LRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDE 106 Query: 295 NYTIRITDRINFDQKSLKN 313 + +RIT+ ++ +++ + Sbjct: 107 KFAVRITEIVSPEKRLAEG 125 >gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046] gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046] Length = 137 Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Syntrophothermus lipocalidus DSM 12680] gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Syntrophothermus lipocalidus DSM 12680] Length = 400 Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +N+ + + T+K+++ L G ++ + NGK I E+ + + Sbjct: 321 IMDVPLNVSVELGRTRKTIKEILDLGPGSIVQLEKLAGEPVDILVNGKLIAKGEVVVIDE 380 Query: 295 NYTIRITDRINFDQKSLK 312 NY +R+T I+ + K Sbjct: 381 NYGVRVTAIISPMDRVSK 398 >gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str. Paris] gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str. Paris] Length = 111 Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 2/104 (1%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + +Q N + V++ I K T+++++ L G ++ Sbjct: 6 ETSAEQLNQNQGNPLNPDSGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVA 63 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG + E+ V + +R+TD ++ ++ Sbjct: 64 LDRLAGDPLDVLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 107 >gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4] gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4] Length = 420 Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 20/198 (10%), Positives = 56/198 (28%), Gaps = 18/198 (9%) Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 ++ + + + L + + I + N V + M Sbjct: 220 IDSNIMQLVTVTFAKRLVDDLMNPAPIDGDFLGEEVIPEMPANEPPAEKSEVHSRRSEMP 279 Query: 190 IENVASSFVLIIPQETLLKTTLI--SLSSQNKSENQS---------------EDLIDPFA 232 + + Q +T S + + Sbjct: 280 QNDRSHHVDQSFEQPIHERTREQQHIGSGMHGGREVDVQPAAFSHFEPQPLSNHESKNLS 339 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + K ++K+++ L G +I + N K I E+ + Sbjct: 340 M-LLDIPLQVTVELGRTKRSIKEILELGQGSIIELDKLAGEPVDILVNQKLIAKGEVVVI 398 Query: 293 GKNYTIRITDRINFDQKS 310 +++ +R+TD ++ + + Sbjct: 399 EESFGVRVTDIVSQEDRI 416 Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 14/167 (8%), Positives = 49/167 (29%), Gaps = 1/167 (0%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 + +G + ++ V+I+ + + + F + Sbjct: 53 SDIEQDALGEIGNISFGSAATALSTLLNQKVEITTPTLSLVESKELPAEFPQPHVAVHVE 112 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + + + +LG + + ++ + + S + Sbjct: 113 YTEGFEGMNLLVIKTGDAAIIADLMLGGDGTNPASDLSDMHVSAVQEAMNQMMGSASTSM 172 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 + + + SP D D+ + +N ++ + I+ + I + Sbjct: 173 STVFNKRVDISPPGIDLMDLKHNVGTSNVPEDQILVKISFRLKIGEL 219 >gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661] gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661] Length = 133 Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 51 DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLEGLAGEPLDILINGYLIAQGEVVVV 110 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 111 ADKYGVRITDIITPTERM 128 >gi|134095085|ref|YP_001100160.1| motor switch protein [Herminiimonas arsenicoxydans] gi|55977143|gb|AAV68364.1| FliN [Herminiimonas arsenicoxydans] gi|133738988|emb|CAL62036.1| Flagellar motor switch protein FliN [Herminiimonas arsenicoxydans] Length = 141 Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 61 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 120 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 121 KFGIRLTDIITPSERIRK 138 >gi|329929333|ref|ZP_08283086.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5] gi|328936702|gb|EGG33145.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5] Length = 420 Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 33/80 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + +KD++ + G +I + N K I E+ + Sbjct: 339 NLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVI 398 Query: 293 GKNYTIRITDRINFDQKSLK 312 +N+ +R+TD ++ + K Sbjct: 399 DENFGVRVTDIVSQWDRIQK 418 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 19/196 (9%), Positives = 60/196 (30%), Gaps = 2/196 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + + VDI+ K S F + + Sbjct: 42 QDALGEIGNITFGSAATALSTLLGKKVDITTPRVSIIKRSEFEEEFPKPHVAVHVKYVDG 101 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + +LG + + N + ++ + + + ++ Sbjct: 102 FEGINSLVIKTRDAQVIADLMLGGEGNPVEEELNEIHISAVQEAMNQMMGSSATSMSTIF 161 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D ++ + N +E + I+ + I + S+ + ++P Sbjct: 162 NRFVNISPPGIDILNMANGEGVNNLPPDETLIKISFRLIIGELIDSTIMQLLPVHFSKDM 221 Query: 210 TLISLSSQNKSENQSE 225 + ++ + + + Sbjct: 222 VHMLINGTEEPQPAKQ 237 >gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. JDR-2] gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. JDR-2] Length = 421 Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + +KD++ L G +I + N K I E+ + Sbjct: 340 NLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVI 399 Query: 293 GKNYTIRITDRINFDQKSLK 312 +N+ +R+TD ++ + K Sbjct: 400 DENFGVRVTDIVSQWDRIQK 419 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 60/191 (31%), Gaps = 2/191 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + + VDI+ K + + F + S + Sbjct: 44 QDALGEIGNITFGSAATALSTLLGKKVDITTPQVTFIKREDLANEFPKPHVAVSVQYVDG 103 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + +LG + Q N + ++ + + + ++ Sbjct: 104 FQGINSLVIKTKDAQVIADLMLGGEGDVTLQELNEIHISAVQEAMNQMMGSSATSMSTIF 163 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D D+D + + I+ +TI + + S+ + ++P + Sbjct: 164 NRFVNISPPGIDILDVDSGGGMGQLPTEDVFIKISFRLTIGDLIDSTIMQLLPVPFAKQM 223 Query: 210 TLISLSSQNKS 220 I + + Sbjct: 224 VAILMGDVEEE 234 >gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 2360] gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 2360] gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 1313] Length = 406 Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 32/303 (10%), Positives = 82/303 (27%), Gaps = 25/303 (8%) Query: 21 LTGKLGDKKTIEKI---SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII 74 + G G K E S++ + + + +DIS + Sbjct: 116 MMGGDGSNKEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKAFPMTLDAAV 175 Query: 75 HSFKEN-------FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + F S + ++ N++ + E + + Sbjct: 176 PEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEEVAA 235 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S V++ +A + Q Q + Y Y + + + Sbjct: 236 SAVQEPVAGQHNEQYYHAQPSQQPYQQPPQQPYQQPYQQPYHQPYQQQYQQYYQPYEQPP 295 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + + + + + + + + + + Sbjct: 296 RQNDGYRNPINV------------QPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELG 343 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +KD++ G +I + NGK I E+ + +++ +RITD ++ Sbjct: 344 RTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPS 403 Query: 308 QKS 310 ++ Sbjct: 404 KRL 406 Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 19/228 (8%), Positives = 59/228 (25%), Gaps = 11/228 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G S N + +G + + V I Sbjct: 14 LNGSSSEGN---------EENSANEELTSQEIDALGEIGNISMGTSATTLNSLLGQRVVI 64 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + + ++V + + + + + ++G Sbjct: 65 TTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKEDDAKVITDLMMGGDGSNK 124 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 + + + I + ++ + + SP +D + Sbjct: 125 EGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKAFPMTLDAAVPEAEFPRGD 184 Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 + + M I + S + ++P + K ++S+ + E+ Sbjct: 185 KIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEE 232 >gi|94314218|ref|YP_587427.1| flagellar motor switch FliN [Cupriavidus metallidurans CH34] gi|93358070|gb|ABF12158.1| Flagellar motor switch FliN [Cupriavidus metallidurans CH34] Length = 156 Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 76 ILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVND 135 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 136 KFGIRLTDIITPSERIRK 153 >gi|261407971|ref|YP_003244212.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. Y412MC10] gi|261284434|gb|ACX66405.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. Y412MC10] Length = 420 Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 33/80 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + +KD++ + G +I + N K I E+ + Sbjct: 339 NLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVI 398 Query: 293 GKNYTIRITDRINFDQKSLK 312 +N+ +R+TD ++ + K Sbjct: 399 DENFGVRVTDIVSQWDRIQK 418 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 19/196 (9%), Positives = 60/196 (30%), Gaps = 2/196 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + + VDI+ K S F + + Sbjct: 42 QDALGEIGNITFGSAATALSTLLGKKVDITTPRVSIIKRSEFEEEFPKPHVAVHVKYVDG 101 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + +LG + + N + ++ + + + ++ Sbjct: 102 FEGINSLVIKTRDAQVIADLMLGGEGNPMEEELNEIHISAVQEAMNQMMGSSATSMSTIF 161 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + SP D ++ + N +E + I+ + I + S+ + ++P Sbjct: 162 NRFVNISPPGIDILNMANGEGVNNLPPDETLIKISFRLIIGELIDSTIMQLLPVHFSKDM 221 Query: 210 TLISLSSQNKSENQSE 225 + ++ + + + Sbjct: 222 VHMLINGTEEPQPAKQ 237 >gi|27904579|ref|NP_777705.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395831|sp|Q89AZ4|FLIM_BUCBP RecName: Full=Flagellar motor switch protein FliM gi|27903976|gb|AAO26810.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 331 Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 85/273 (31%), Gaps = 13/273 (4%) Query: 35 SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94 ++ + K K E D+D IS+ KF +I + K N + +S + Sbjct: 44 LENMHECFLKQFTKHISEYSDVDCKISFYKFIIQKFKNIKKNIKNNSISDCFEISPYKKL 103 Query: 95 FFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I S+N+ L+E L G + + L+ + K+ I + Sbjct: 104 GIIFVSDNISDYLIEYLFGGCELKNSSNGLFKKLTLSTINIVKKMFKIILEQYYFLWNKV 163 Query: 154 --QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL---LK 208 + L +++ + S + T + I N + +P Sbjct: 164 SLCKMKLILNRLQNLNEISNVNFINSKDTFVTFLFRLRIANKFGMLGICLPTSLSFQCNN 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQL-----NVNIDTRINLKKTTLKDVVTLKIGQ 263 ++ + + ++ +Q+ + + + TL ++ K+G Sbjct: 224 EADVNSVHNVSHISYDNVVNTEIRKRLFQVIVYNCKIVLKIVLIENYITLSKIIAFKVGD 283 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++P + + + I + Y Sbjct: 284 ILPIHMLDN--VVAYSENVPILIGKYKMFKNKY 314 >gi|317151985|ref|YP_004120033.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis Aspo-2] gi|316942236|gb|ADU61287.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis Aspo-2] Length = 174 Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K + +++ L G V+ + NGK + E + + Sbjct: 95 ILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE 154 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 155 KFGIRLTDIISPIERV 170 >gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC 35580] gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC 35580] Length = 382 Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + +K+++++ G +I + N K I E+ + + Sbjct: 304 IMDVFMEMTVELGRTRKMIKEILSMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVIDE 363 Query: 295 NYTIRITDRINFDQKSLK 312 N+ +R+T+ ++ ++ Sbjct: 364 NFGVRVTEILSPAERISD 381 >gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC 43243] gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC 43243] Length = 197 Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 36/100 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + Q + + S + + + + T+KD++ G +I Sbjct: 98 DVNVQPAAFQPFAGDLSALSQKENIDLIMDVPLEVTVELGRTSKTIKDILEFAPGTIIEL 157 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + NGK + E+ + +N+ +RIT+ I Sbjct: 158 NKIAGESVDVLVNGKNVAKGEVVVIEENFGVRITEIIKEQ 197 >gi|116872089|ref|YP_848870.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740967|emb|CAK20087.1| flagellar motor switch domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 512 Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 26/283 (9%), Positives = 83/283 (29%), Gaps = 25/283 (8%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L+ + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAKEVAEK 409 Query: 223 --------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + ++ + + + V ++ K L+ ++ Sbjct: 410 EEATTLTAAVEPEKPVEPVVEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEK 469 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 V+ +L+ NG I L RV ++ I++T+ + Sbjct: 470 DVVILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 512 >gi|220903654|ref|YP_002478966.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867953|gb|ACL48288.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 190 Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ + + + +++ L G V+ + NGK + E + + Sbjct: 111 ILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVVINE 170 Query: 295 NYTIRITDRINFDQKS 310 + +R+TD I+ ++ Sbjct: 171 KFGVRLTDIISPIERV 186 >gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae WPP163] gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae WPP163] Length = 137 Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD + ++ Sbjct: 115 SDKYGVRITDIMTPSERM 132 >gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica] Length = 144 Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K ++ L G V+ + NG I E+ V Sbjct: 62 DLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 121 Query: 293 GKNYTIRITDRINFDQKS 310 Y IRITD I ++ Sbjct: 122 SDKYGIRITDIITPSERM 139 >gi|323700137|ref|ZP_08112049.1| flagellar motor switch protein FliN [Desulfovibrio sp. ND132] gi|323460069|gb|EGB15934.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans ND132] Length = 183 Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K + +++ L G V+ + NGK + E + + Sbjct: 104 ILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE 163 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 164 KFGIRLTDIISPIERV 179 >gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1] gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1] Length = 137 Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + ++++++ L G VI + NG I E+ V + Sbjct: 58 ILDIPVTLSMEVGSTNISIRNLLQLNQGSVIELDRLAGEPLDVMVNGTLIAHGEVVVVNE 117 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 118 KFGIRLTDVISPQERIKK 135 >gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens subsp. laumondii TTO1] Length = 139 Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K ++ L G V+ + NG I E+ V Sbjct: 57 DLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 116 Query: 293 GKNYTIRITDRINFDQKS 310 Y IRITD I ++ Sbjct: 117 SDKYGIRITDIITPSERM 134 >gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2] Length = 151 Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + ++++++ L G VI + NG I E+ V + Sbjct: 72 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 131 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 132 KFGIRLTDVISPSERIKK 149 >gi|53723901|ref|YP_104281.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 23344] gi|52427324|gb|AAU47917.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 23344] Length = 124 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 42 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 101 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 102 NDKFGIRLTDIITPSERIRK 121 >gi|83949668|ref|ZP_00958401.1| hypothetical protein ISM_01200 [Roseovarius nubinhibens ISM] gi|83837567|gb|EAP76863.1| hypothetical protein ISM_01200 [Roseovarius nubinhibens ISM] Length = 339 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 26/297 (8%), Positives = 72/297 (24%), Gaps = 16/297 (5%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSL--GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70 + + + + + ++ + L K + L + +S Sbjct: 1 MDSVATDTVKHRKARAAREGFDARAMSPAKALRVGLGKAADGTLGLALSVSTVEQSRLSQ 60 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 + + + + ++E + R L+ Sbjct: 61 KDLPEVLAGTGLTCLVEDDRGR-RGAVRLDFPALSAVIEIQTIGRVAEREVVE-RPLTRT 118 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY--DIDYLKKNTNRLSNEFVTTINMNM 188 + L + + + + + + L + + + Sbjct: 119 DAALCAPLLDAVFEAFETGAEDLPDGQSWQGYRFGAMAEDAHSLSLALEADHYHLFRVGV 178 Query: 189 TIEN--VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + A + L++P + + + D + V + + Sbjct: 179 MLGEAKRAGVYELLLPVMD-------APQVSKEKPGRPRDEPRALSPVVMGAPVTLQAIL 231 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRITD 302 L+ ++LK G + L A G + LG+V IR+ Sbjct: 232 ARHSIPLEKALSLKAGDQLIVPGSGAMALRLEAPGGHLVSDGRLGQVNGMRAIRLRK 288 >gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium 9_2_54FAA] Length = 145 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 63 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 122 Query: 293 GKNYTIRITDRINFDQKS 310 + +RITD I ++ Sbjct: 123 ADKFGVRITDIITPSERM 140 >gi|149908449|ref|ZP_01897112.1| putative polar flagellar switch protein FliN [Moritella sp. PE36] gi|149808612|gb|EDM68547.1| putative polar flagellar switch protein FliN [Moritella sp. PE36] Length = 127 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 N S + + V I + K ++++++ L G V+ Sbjct: 27 LEDFSNDDNAFSPEQQHKL-DSILDIPVVISMEVGRSKISIRNLLQLNQGSVVELDRIAG 85 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 86 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125 >gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6] Length = 137 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 115 ADKYGVRITDIITPSERM 132 >gi|161523222|ref|YP_001578234.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC 17616] gi|189348921|ref|YP_001944549.1| flagellar motor switch protein [Burkholderia multivorans ATCC 17616] gi|221214538|ref|ZP_03587508.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1] gi|160340651|gb|ABX13737.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC 17616] gi|189332943|dbj|BAG42013.1| flagellar motor switch protein [Burkholderia multivorans ATCC 17616] gi|221165428|gb|EED97904.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1] Length = 159 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 77 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 136 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 137 NDKFGIRLTDIITPSERIRK 156 >gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName: Full=Flagellar motor switch protein MopA Length = 106 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 24 DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 83 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 84 SDKYGVRITDIITPSERM 101 >gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121] gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121] Length = 150 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V + + +++++ L G V+ + NG I E+ Sbjct: 68 MDLIMDIPVTLSMELGSTSIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVV 127 Query: 292 VGKNYTIRITDRINFDQKS 310 V Y IR+TD ++ ++ Sbjct: 128 VNDKYGIRLTDVVSPSERI 146 >gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 127 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V + + K T+K+++ L G V+ + NG I E+ Sbjct: 44 MNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVV 103 Query: 292 VGKNYTIRITDRINFDQKSLK 312 V + IRITD I ++ + Sbjct: 104 VSDKFGIRITDIITPSERMHR 124 >gi|256830497|ref|YP_003159225.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM 4028] gi|256579673|gb|ACU90809.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM 4028] Length = 188 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + ++ K + +++ L G VI + NGK + E + + Sbjct: 109 ILDIPLEVSAQLGSTKLLINELLQLGQGSVIELNKLAGEPLEILVNGKLVARGEAVVINE 168 Query: 295 NYTIRITDRINFDQKS 310 + +R+TD I+ ++ Sbjct: 169 KFGVRLTDIISPIERV 184 >gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Halanaerobium praevalens DSM 2228] Length = 417 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 33/81 (40%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + + R+ ++D++ L G +I L NGK + E+ Sbjct: 336 MELIKDVPLEVTVRLGKTVMKIRDILDLGDGSIIELDKLAGEPVDLLVNGKLVAKGEVVV 395 Query: 292 VGKNYTIRITDRINFDQKSLK 312 + +N+ R+ D I+ ++ K Sbjct: 396 IDENFGFRVKDIISPAERLSK 416 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 13/172 (7%), Positives = 46/172 (26%), Gaps = 9/172 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS- 87 + + + +D V+I+ + F +I + + V + Sbjct: 45 SEEIDVIGEVNNIAMGSSATALSTLLDEKVEITTPEVEVQTFKQLIEEYDKPCVLVKVEY 104 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + ++G + + L+ + + Q+ + Sbjct: 105 VEGIEGLSLLVIDTKDAAVIADLMMGGDG--LEGMDQEMLNEISISAVGEAMNQMMGAAS 162 Query: 148 QCISTTQESSPNLEDFYDI------DYLKKNTNRLSNEFVTTINMNMTIENV 193 +S + N+ + E + + + + +V Sbjct: 163 TAMSNILDVLVNISPPTAEFIDLDDVIEEGRDWFDPAEEIVVTSFKLKVGDV 214 >gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum JW20] gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum JW20] Length = 398 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 30/303 (9%), Positives = 77/303 (25%), Gaps = 33/303 (10%) Query: 21 LTGKLGDKKTIEKI---SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII 74 + G G K E S++ + + + +DIS + Sbjct: 116 MMGGDGSNKEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAV 175 Query: 75 HSFKEN-------FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + F S + ++ N++ + E + + Sbjct: 176 PEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEEVAA 235 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S V++ +A + Q P + + + Sbjct: 236 SAVQEPVAGQHNEQYYHA-------QPSQQPYQQPYQQPYHQPYQQQYQQYYQPYEQPPR 288 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + + + + + + + + Sbjct: 289 QNDGYR-------------NPINVQPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELG 335 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +KD++ G +I + NGK I E+ + +++ +RITD ++ Sbjct: 336 RTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPS 395 Query: 308 QKS 310 ++ Sbjct: 396 KRL 398 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 19/228 (8%), Positives = 59/228 (25%), Gaps = 11/228 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G S N + +G + + V I Sbjct: 14 LNGSSSEGN---------EENSANEELTSQEIDALGEIGNISMGTSATTLNSLLGQRVVI 64 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + + + ++V + + + + + ++G Sbjct: 65 TTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKEDDAKVITDLMMGGDGSNK 124 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 + + + I + ++ + + SP +D + Sbjct: 125 EGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAVPEAEFPRGD 184 Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 + + M I + S + ++P + K ++S+ + E+ Sbjct: 185 KIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEE 232 >gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] Length = 518 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 34/283 (12%), Positives = 85/283 (30%), Gaps = 32/283 (11%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V ++ + Q + + + S+ S + Sbjct: 238 STVLSKLLNRKVTLAIPTAQVIDSKEF-DYPERPCIVTTVEFVEGLKSSNTFIISKQAAL 296 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS----AVLNQCISTTQESSPNL- 160 + +LG + E + L+ +E + + Q+ +++ + + SP + Sbjct: 297 VMANLMLGGTGE---VDEDAELTELELSAMQEVMNQMMGYSATAMSEMLGKKIDISPPIV 353 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 E D + + + + + + P+ + LS Q + Sbjct: 354 EVCNVGDAMIQKDIDGGKTVEVIFPLEVESLIKTPMYQIFNPELAKE-IAHMMLSVQEEV 412 Query: 221 ENQSEDLI---------------------DPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + ++ K L D +T Sbjct: 413 QAETPVEEVVETPPAEPIQVEKATPQISTTETEAVIDSIPITLEVIFGTAKVKLADFITW 472 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ + L ANG I S L RV ++ I+IT+ Sbjct: 473 CEKDIVILKESYEQPLSLLANGIHIGSGTLVRVNDHFGIKITE 515 >gi|119899014|ref|YP_934227.1| flagellar motor switch FliN [Azoarcus sp. BH72] gi|119671427|emb|CAL95340.1| flagellar motor switch FliN [Azoarcus sp. BH72] Length = 159 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K ++++++ L G V+ + NG I E+ V Sbjct: 77 DMILDIPVQLTVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQGEVVVV 136 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 137 NDKFGIRLTDIITPAERMRK 156 >gi|329901243|ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium IMCC9480] gi|327549175|gb|EGF33767.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium IMCC9480] Length = 137 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 57 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 116 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 117 KFGIRLTDIISPAERIKK 134 >gi|303326579|ref|ZP_07357022.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3] gi|302864495|gb|EFL87426.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3] Length = 194 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + L + +++ + + + +++ L G V+ + Sbjct: 100 SRQPRDNKLKREL-DFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVY 158 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK + E + + + +R+TD I+ ++ Sbjct: 159 VNGKLVARGEAVVINEKFGVRLTDIISPIERV 190 >gi|332533118|ref|ZP_08408987.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis ANT/505] gi|332037400|gb|EGI73854.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis ANT/505] Length = 132 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 1/111 (0%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P ++ + S D + V I + K +++++ L Sbjct: 21 PDDSGEAHVAELDELSDSKHEMSGDEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQ 79 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 80 GSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130 >gi|46578463|ref|YP_009271.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. Hildenborough] gi|120603953|ref|YP_968353.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4] gi|46447874|gb|AAS94530.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. Hildenborough] gi|120564182|gb|ABM29926.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4] gi|311232391|gb|ADP85245.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris RCH1] Length = 170 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 35/93 (37%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +S D + +++ + + + +++ L G V+ + Sbjct: 74 EESRAPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEV 133 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK + E + + + +R+TD I+ ++ Sbjct: 134 FVNGKLVARGEAVVINEKFGVRLTDIISPIERV 166 >gi|288942629|ref|YP_003444869.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM 180] gi|288898001|gb|ADC63837.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM 180] Length = 148 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I I + +++++ L G V+ + NG I E+ V + Sbjct: 69 VLDVPVTISMEIGRTRIPIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVVVVNE 128 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 129 KFGIRLTDVISPSERVRK 146 >gi|85707184|ref|ZP_01038271.1| possible flagellar switch protein FliM [Roseovarius sp. 217] gi|85668343|gb|EAQ23217.1| possible flagellar switch protein FliM [Roseovarius sp. 217] Length = 342 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 24/261 (9%), Positives = 76/261 (29%), Gaps = 14/261 (5%) Query: 45 FLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104 L ++ L + ++ + + + + ++ + + + Sbjct: 39 ALARVADSLFGLGITVATVEQMRLPLAEVAQHVSDEGLLVHLDGAA-GTRGALCLDPQFL 97 Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE--SSPNLED 162 L+E + R+ + + + I + A + ++ E + Sbjct: 98 AGLIEVQTTGAVR-PAVARPRAATRTDAAMVAPLIDAVMAEFDSQMTAEVEGYLARGFSF 156 Query: 163 FYDIDYLKKNTNR--LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ ++ + + + + +++ LL + Sbjct: 157 GDLVEDMRALSLVLLAPDYDLLRLTVDLGPGAKTGHLD-------LLLPVVPLPVRAAPG 209 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSA 279 D P + V +D + + L+DV K G ++P ++ Sbjct: 210 VGALGDGSAPLDQVVRTAPVVLDAVMGRLRLPLRDVWAFKPGDLVPIPREALGETQLVGT 269 Query: 280 NGKEIYSCELGRVGKNYTIRI 300 G + +LG++ +R+ Sbjct: 270 KGHIVAIAQLGQMNGWRALRL 290 >gi|73539703|ref|YP_300070.1| Type III secretion system outer membrane O protein [Ralstonia eutropha JMP134] gi|72123040|gb|AAZ65226.1| Type III secretion system outer membrane O protein [Ralstonia eutropha JMP134] Length = 142 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 60 EMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 119 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 120 NDKFGIRLTDIITPSERIRK 139 >gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568] gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568] Length = 137 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 + +RITD I ++ Sbjct: 115 ADKFGVRITDIITPSERM 132 >gi|206561842|ref|YP_002232607.1| flagellar motor switch protein FliN [Burkholderia cenocepacia J2315] gi|198037884|emb|CAR53828.1| flagellar motor switch protein FliN [Burkholderia cenocepacia J2315] Length = 151 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 69 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 128 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 129 NDKFGIRLTDIITPAERIRK 148 >gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1] gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58] gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719] gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192] gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1] gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016] gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1] gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa UCBPP-PA14] gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719] gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192] gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58] gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016] Length = 157 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + ++++++ L G VI + NG I E+ V + Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 138 KFGIRLTDVISPSERIKK 155 >gi|167585019|ref|ZP_02377407.1| flagellar motor switch protein FliN [Burkholderia ubonensis Bu] Length = 163 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 81 DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 140 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 141 NDKFGIRLTDIITPSERIRK 160 >gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7] gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7] Length = 157 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + ++++++ L G VI + NG I E+ V + Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 138 KFGIRLTDVISPSERIKK 155 >gi|167560938|ref|ZP_02353854.1| flagellar motor switch protein FliN [Burkholderia oklahomensis EO147] gi|167568198|ref|ZP_02361072.1| flagellar motor switch protein FliN [Burkholderia oklahomensis C6786] Length = 162 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 80 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 139 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 140 NDKFGIRLTDIITPSERIRK 159 >gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582] gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582] Length = 138 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 115 Query: 293 GKNYTIRITDRINFDQKS 310 + +RITD I ++ Sbjct: 116 ADKFGVRITDIITPSERM 133 >gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa] Length = 157 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + ++++++ L G VI + NG I E+ V + Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 138 KFGIRLTDVISPSERIKK 155 >gi|237653570|ref|YP_002889884.1| flagellar motor switch protein FliN [Thauera sp. MZ1T] gi|237624817|gb|ACR01507.1| flagellar motor switch protein FliN [Thauera sp. MZ1T] Length = 155 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V I + K ++++++ L G V+ + NG I E+ V Sbjct: 73 DMILDIPVQITVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQGEVVVV 132 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 133 NDKFGIRLTDIITPAERMRK 152 >gi|221201777|ref|ZP_03574814.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2M] gi|221207718|ref|ZP_03580726.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2] gi|221172564|gb|EEE05003.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2] gi|221178197|gb|EEE10607.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2M] Length = 159 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 77 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 136 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 137 NDKFGIRLTDIITPSERIRK 156 >gi|77165629|ref|YP_344154.1| surface presentation of antigens (SPOA) protein [Nitrosococcus oceani ATCC 19707] gi|254434523|ref|ZP_05048031.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27] gi|76883943|gb|ABA58624.1| Surface presentation of antigens (SPOA) protein [Nitrosococcus oceani ATCC 19707] gi|207090856|gb|EDZ68127.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27] Length = 143 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + I + ++++++ L G V+ + NG I EL V Sbjct: 62 ELILDIPVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVV 121 Query: 293 GKNYTIRITDRINFDQKS 310 + + IR+TD I+ ++ Sbjct: 122 NEKFGIRLTDVISASERV 139 >gi|116694516|ref|YP_728727.1| flagellar motor switch protein/type III secretory pathway protein [Ralstonia eutropha H16] gi|113529015|emb|CAJ95362.1| flagellar motor switch protein/type III secretory pathway protein [Ralstonia eutropha H16] Length = 149 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 67 EMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 126 Query: 293 GKNYTIRITDRINFDQKS 310 + IR+TD I ++ Sbjct: 127 NDKFGIRLTDIITPSERI 144 >gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13] gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13] Length = 137 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 + +RITD I ++ Sbjct: 115 ADKFGVRITDIITPSERM 132 >gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor lactoaceticus 6A] Length = 375 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++ E + + + + I + + +++++ G +I Sbjct: 281 QFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 339 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK I E+ + +N+ +RITD +N + Sbjct: 340 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 7/216 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 + + +G + ++ V+I+ K+ + F Sbjct: 27 SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPIVSILKWEELPKEFPVPYVAIKVV 86 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + V + + ++G + E +L LS +++ + + S Sbjct: 87 YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEA-MNQMVGSAST 145 Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201 L+ ++ + +P + + + + + + MTI + + S + +I Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQLI 205 Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 P + + L + + Q E + Sbjct: 206 PVDFAKQLVDAMLKNTLGTPAQIEVSAQKQQEAAKE 241 >gi|78358624|ref|YP_390073.1| surface presentation of antigens (SPOA) protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221029|gb|ABB40378.1| Surface presentation of antigens (SPOA) protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 175 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 37/93 (39%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++++ D + +++ + + + +++ L G V+ + Sbjct: 79 EEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEI 138 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK + E + + + +R+TD I+ ++ Sbjct: 139 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 171 >gi|67641903|ref|ZP_00440668.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse 4] gi|121599067|ref|YP_994774.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1] gi|124384349|ref|YP_001027841.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10229] gi|126449143|ref|YP_001082211.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10247] gi|167000455|ref|ZP_02266269.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20] gi|167717396|ref|ZP_02400632.1| flagellar motor switch protein FliN [Burkholderia pseudomallei DM98] gi|167736439|ref|ZP_02409213.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 14] gi|167813513|ref|ZP_02445193.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 91] gi|167822055|ref|ZP_02453526.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 9] gi|167843668|ref|ZP_02469176.1| flagellar motor switch protein FliN [Burkholderia pseudomallei B7210] gi|167900651|ref|ZP_02487856.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC 13177] gi|167908871|ref|ZP_02495962.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 112] gi|167916910|ref|ZP_02504001.1| flagellar motor switch protein FliN [Burkholderia pseudomallei BCC215] gi|226193338|ref|ZP_03788948.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pakistan 9] gi|121227877|gb|ABM50395.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1] gi|124292369|gb|ABN01638.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10229] gi|126242013|gb|ABO05106.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10247] gi|225934938|gb|EEH30915.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pakistan 9] gi|238522916|gb|EEP86358.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse 4] gi|243063643|gb|EES45829.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20] Length = 162 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 80 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 139 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 140 NDKFGIRLTDIITPSERIRK 159 >gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Selenomonas sputigena ATCC 35185] gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Selenomonas sputigena ATCC 35185] Length = 394 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 35/75 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K T+KD++ L G ++ + NGK + E+ + + Sbjct: 315 ILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVVVIDE 374 Query: 295 NYTIRITDRINFDQK 309 N+ +RITD ++ ++ Sbjct: 375 NFGVRITDIVSPAER 389 >gi|269961628|ref|ZP_06175990.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833669|gb|EEZ87766.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 136 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + + + V I + + ++++++ L Sbjct: 24 PSIDVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|254251032|ref|ZP_04944350.1| flagellar motor switch protein [Burkholderia dolosa AUO158] gi|124893641|gb|EAY67521.1| flagellar motor switch protein [Burkholderia dolosa AUO158] Length = 166 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 84 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 143 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 144 NDKFGIRLTDIITPAERIRK 163 >gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1] gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1] Length = 154 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + VNI + + +++++ L G VI + NG I E+ V + Sbjct: 75 ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 134 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 135 KFGIRLTDVISPSERIKK 152 >gi|170698079|ref|ZP_02889160.1| flagellar motor switch protein FliN [Burkholderia ambifaria IOP40-10] gi|170137040|gb|EDT05287.1| flagellar motor switch protein FliN [Burkholderia ambifaria IOP40-10] Length = 163 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 81 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 140 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 141 NDKFGIRLTDIITPAERIRK 160 >gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 375 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++ E + + + + I + + +++++ G +I Sbjct: 281 QFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 339 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK I E+ + +N+ +RITD +N + Sbjct: 340 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 7/216 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 + + +G + ++ V+I+ K+ + F Sbjct: 27 SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPIVSILKWEELPKEFPVPYVAIKVV 86 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + V + + ++G + E +L LS +++ + + S Sbjct: 87 YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEA-MNQMVGSAST 145 Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201 L+ ++ + +P + + + + + + MTI + + S + +I Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQLI 205 Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 P + + L + + Q E + Sbjct: 206 PVDFAKQLVDAMLKNTLGTPAQIEVSAQKQQEAAKE 241 >gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. spizizenii str. W23] Length = 379 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 2/196 (1%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91 +G + ++ VDI+ S S I +F E + Sbjct: 39 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVIPKSKISDAFPEPYVAIEVNYTEGF 98 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 S + + N + + ++G + + ++ + + + ++ S Sbjct: 99 SGSNLLVVEQNDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 158 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210 + SP + D+ K +E + ++ N+ + + SS + + P Sbjct: 159 KKIDISPPRVELLDVTEKKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDLI 218 Query: 211 LISLSSQNKSENQSED 226 +++ N E + Sbjct: 219 SSLMNTGNAEEETTPQ 234 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 40/103 (38%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + N++ + ++I + K ++K+++ L G +I Sbjct: 273 PVQVSPVEFSAFDPNEASQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIEL 332 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + + E+ + +N+ +R+TD ++ ++ Sbjct: 333 DKLAGEPVDILVNQRIVAKGEVVVIEENFGVRVTDILSQAERI 375 >gi|90577377|ref|ZP_01233188.1| putative flagellar motor switch protein [Vibrio angustum S14] gi|90440463|gb|EAS65643.1| putative flagellar motor switch protein [Vibrio angustum S14] Length = 257 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 90/287 (31%), Gaps = 44/287 (15%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDL--------DVDISYTSCQSGKFSHIIHSFKENFV 82 + K + L D ++ +S TS ++ Sbjct: 6 LGKPIHIIKDELANILNNSLLGLTDQIQKWVKTHELTMSVTSIDFQSPKQ-----GQHAA 60 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142 F+ CS L+I L + + + +++++T + +L +R Sbjct: 61 FTVLHNDG--GMMNFRCSAPLLIALADRFYHSPVNRLNSTKSQTITTSDLRLQERIGRLF 118 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202 SA + D + N LS++ I +++T E ++ I Sbjct: 119 SAQIAP-----------------EDMWQPCDNSLSDDIGLFIQLSVTCEETIGDIIICID 161 Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + T + + +L F+++ V ++T + K+ L V+ LK G Sbjct: 162 SALIQTLTSVIG------LQPTSELNALFSQQLESTKVKLNTVLCEKQMPLDQVLQLKPG 215 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + + + +++ + + IN + Sbjct: 216 DIFDIDLLQSSPISI--GQEHLFNGHVAEQNGQLVL----IINTSKD 256 >gi|307824487|ref|ZP_07654712.1| flagellar motor switch protein FliN [Methylobacter tundripaludum SV96] gi|307734471|gb|EFO05323.1| flagellar motor switch protein FliN [Methylobacter tundripaludum SV96] Length = 126 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I I + +++++ L G V+ + NG I E+ + Sbjct: 47 ILDVPVTISMEIGRTQINIRNLLQLNQGSVVELERFAGEPLDVLVNGTLIAHGEVVVIND 106 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 107 KFGIRLTDVISPSERV 122 >gi|297584048|ref|YP_003699828.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus selenitireducens MLS10] gi|297142505|gb|ADH99262.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus selenitireducens MLS10] Length = 412 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 11/99 (11%), Positives = 37/99 (37%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + + + + + + K ++K+++ L G ++ Sbjct: 310 QPAAFSSFETPSLNENEQRNLDLLMDIPLEVTVELGRTKRSIKEILELGQGSIVELDKLA 369 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + I E+ + +N+ +R+TD ++ ++ Sbjct: 370 GEPVDILVNQRLIAKGEVVVIDENFGVRVTDIVSQAERL 408 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 21/207 (10%), Positives = 59/207 (28%), Gaps = 2/207 (0%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 +G + ++ VDI+ + S + F + S Sbjct: 51 SDIEIDALGEIGNISFGSSATALSTLLNQKVDITTPKVSVVRKSDLEKEFPKPHVAISVT 110 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + + + + ++G P+ + ++ + + S + Sbjct: 111 YTAGFEGLNLLVIKTKDASIIADLMMGNDGTNAPEEMGDMELSAVQEAMNQMMGSASTSM 170 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + + + SP D D+ + + I+ N+ I + + S + ++ Sbjct: 171 STIFNKKVDISPPGIDMMDLAENPDAIEIPGEDVLVQISFNLKIGDLIDSRIMQLLTVSF 230 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFA 232 ++ + DP A Sbjct: 231 AKDMVDQLMNPGGDDDVMDAVQEDPLA 257 >gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 112 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 34/91 (37%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 ++ D + V + + + +++++ L G V+ + Sbjct: 18 QAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NG I E+ V + IR+TD ++ ++ Sbjct: 78 NGTLIAHGEVVVVNDRFGIRLTDVVSPSERI 108 >gi|91223553|ref|ZP_01258818.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269965695|ref|ZP_06179808.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91191639|gb|EAS77903.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269829763|gb|EEZ83999.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 136 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 40/111 (36%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + + + + V I + + ++++++ L Sbjct: 24 PSVDVDEVLAAPLEELKDTSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC 35185] gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC 35185] Length = 398 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 35/75 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K T+KD++ L G ++ + NGK + E+ + + Sbjct: 319 ILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVVVIDE 378 Query: 295 NYTIRITDRINFDQK 309 N+ +RITD ++ ++ Sbjct: 379 NFGVRITDIVSPAER 393 >gi|260772331|ref|ZP_05881247.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP 69.14] gi|260611470|gb|EEX36673.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP 69.14] Length = 136 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + + + V I + K ++++++ L Sbjct: 24 PDVDVDEILAAPLDELKDTSPPITEDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1] gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1] Length = 174 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + I + +++ ++ L G V+ + NG I E+ V + Sbjct: 95 ILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNE 154 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 155 RFGIRLTDVISPAERVKK 172 >gi|153834118|ref|ZP_01986785.1| flagellar motor switch protein [Vibrio harveyi HY01] gi|156975422|ref|YP_001446329.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116] gi|148869488|gb|EDL68486.1| flagellar motor switch protein [Vibrio harveyi HY01] gi|156527016|gb|ABU72102.1| hypothetical protein VIBHAR_03153 [Vibrio harveyi ATCC BAA-1116] Length = 136 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + + D + V I + + ++++++ L Sbjct: 24 PSIDVDEVLAAPLEELKDTSSPITDDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|163801853|ref|ZP_02195750.1| flagellar motor switch protein [Vibrio sp. AND4] gi|159174361|gb|EDP59165.1| flagellar motor switch protein [Vibrio sp. AND4] Length = 136 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + + D + V I + + ++++++ L Sbjct: 24 PSIDVDEVLAAPLEELKDTSSPITDDERRKLDSIMDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|172059106|ref|YP_001806758.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6] gi|171991623|gb|ACB62542.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6] Length = 163 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 81 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 140 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 141 NDKFGIRLTDIITPAERIRK 160 >gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii MLHE-1] gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii MLHE-1] Length = 226 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + I + +++ ++ L G V+ + NG I E+ V + Sbjct: 147 IMDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNE 206 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 207 RFGIRLTDVISAAERVKK 224 >gi|262393596|ref|YP_003285450.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] gi|262337190|gb|ACY50985.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] Length = 136 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 40/111 (36%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + + + + V I + + ++++++ L Sbjct: 24 PSVDVDEVLAAPLEELKDTSSPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. campestris str. B100] gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. campestris] Length = 112 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 38/97 (39%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + ++ + +D D + V + + + +++++ L G V+ Sbjct: 12 ATFESLHAERDQDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGE 71 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ + + IR+TD ++ ++ Sbjct: 72 PLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108 >gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides] gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides] Length = 152 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 38/103 (36%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L + + ++ L R + V + + + T++D++ L G V+ Sbjct: 46 LPPFPTGARMTDATRPLADRLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVE 105 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + NG I E+ VG+ + IR I +++ Sbjct: 106 LDRLAGDPLDVLVNGTPIAKGEVVMVGERFGIRFGQIIEPEKR 148 >gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] Length = 142 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +K ++ L G V+ + NG I E+ V Sbjct: 60 ILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 119 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 120 KFGIRLTDIVTPSERM 135 >gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13] Length = 410 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 40/313 (12%), Positives = 86/313 (27%), Gaps = 32/313 (10%) Query: 14 HPILLAR-LTGKLGDKKT---IEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66 ++A + G G+ E S++ + + +DIS S Sbjct: 114 DAAIIADLMLGGTGENPQNEFDEIHLSAVHEAMNQMMGSAATSMSTVFAKKIDISPPSVM 173 Query: 67 SGKF--SHIIHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119 F E+ + + + S+ L+E LL Sbjct: 174 LIDFKAGDGTSEMPEDELLIKVAFSIKIGKLIDSSIMQILPYPFAKKLVEELL------- 226 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 E I + +Q ++ E + DY ++ R E Sbjct: 227 -------HRDDETNQVSEVIQETEKPTSQANESSYEQRNQEQTASTADYYQREEERSVTE 279 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 + T + + E+ + Sbjct: 280 API--REHAYAGGHERPSNPA--PRTQQAVNVQPAVFSSFETTTVEESEPNNLNMLLDIP 335 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K ++KD++ L G +I + N K I E+ + +++ +R Sbjct: 336 LQVTVELGRTKRSVKDILELSTGSIIELDKLAGEPVDILVNNKLIAQGEVVVIDESFGVR 395 Query: 300 ITDRINFDQKSLK 312 +TD ++ + K Sbjct: 396 VTDIVSQTDRIRK 408 Score = 70.4 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 62/196 (31%), Gaps = 2/196 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + ++ V I+ + S + F + + Sbjct: 42 QDALGEIGNISFGSSATALSTLLNQKVQITTPKVTLVEKSRLESEFPDPYVAIRVSYTEG 101 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 +S + + + + +LG + E ++ + + + + + ++ Sbjct: 102 FSGSNILVVEQKDAAIIADLMLGGTGENPQNEFDEIHLSAVHEAMNQMMGSAATSMSTVF 161 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + + SP D + +E + + ++ I + SS + I+P K Sbjct: 162 AKKIDISPPSVMLIDFKAGDGTSEMPEDELLIKVAFSIKIGKLIDSSIMQILPYPFAKKL 221 Query: 210 TLISLSSQNKSENQSE 225 L +++ SE Sbjct: 222 VEELLHRDDETNQVSE 237 >gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1] gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1] Length = 153 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 6/123 (4%) Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 E + + + ++ + + S DL + V + + Sbjct: 32 DSEGIEDEWAAAMSEQKVEPVKLETLTNPSVPSGGVGSDL-----DLIMDIPVVLSMELG 86 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + +++++ L G V+ + NG I E+ V Y IR+TD ++ Sbjct: 87 NTEIAIRNLMQLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVVVVNDKYGIRLTDVVSPS 146 Query: 308 QKS 310 ++ Sbjct: 147 ERI 149 >gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct] Length = 158 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + ++++++ L G VI + NG I E+ V + Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVAVNE 137 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 138 KFGIRLTDVISPSERIKK 155 >gi|260767698|ref|ZP_05876633.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|260617207|gb|EEX42391.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|315179470|gb|ADT86384.1| flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 136 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + + D + V I + K ++++++ L Sbjct: 24 PDIDVDEVLAAPLDELKDTTSPISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|53717667|ref|YP_106653.1| flagellar motor switch protein [Burkholderia pseudomallei K96243] gi|126440526|ref|YP_001057085.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668] gi|126454703|ref|YP_001064315.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106a] gi|134281531|ref|ZP_01768239.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305] gi|167892139|ref|ZP_02479541.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 7894] gi|217423854|ref|ZP_03455354.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576] gi|237814423|ref|YP_002898874.1| flagellar motor switch protein FliN [Burkholderia pseudomallei MSHR346] gi|242314847|ref|ZP_04813863.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106b] gi|254174650|ref|ZP_04881311.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 10399] gi|254184093|ref|ZP_04890684.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1655] gi|254186559|ref|ZP_04893076.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pasteur 52237] gi|254201358|ref|ZP_04907722.1| flagellar motor switch protein FliN [Burkholderia mallei FMH] gi|254206700|ref|ZP_04913051.1| flagellar motor switch protein FliN [Burkholderia mallei JHU] gi|254260996|ref|ZP_04952050.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710a] gi|254298639|ref|ZP_04966090.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 406e] gi|254357363|ref|ZP_04973637.1| flagellar motor switch protein FliN [Burkholderia mallei 2002721280] gi|52208081|emb|CAH34011.1| probable flagellar motor switch protein [Burkholderia pseudomallei K96243] gi|126220019|gb|ABN83525.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668] gi|126228345|gb|ABN91885.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106a] gi|134247198|gb|EBA47284.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305] gi|147747252|gb|EDK54328.1| flagellar motor switch protein FliN [Burkholderia mallei FMH] gi|147752242|gb|EDK59308.1| flagellar motor switch protein FliN [Burkholderia mallei JHU] gi|148026427|gb|EDK84512.1| flagellar motor switch protein FliN [Burkholderia mallei 2002721280] gi|157808697|gb|EDO85867.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 406e] gi|157934244|gb|EDO89914.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pasteur 52237] gi|160695695|gb|EDP85665.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 10399] gi|184214625|gb|EDU11668.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1655] gi|217392917|gb|EEC32939.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576] gi|237504588|gb|ACQ96906.1| flagellar motor switch protein FliN [Burkholderia pseudomallei MSHR346] gi|242138086|gb|EES24488.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106b] gi|254219685|gb|EET09069.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710a] Length = 165 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 83 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 142 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 143 NDKFGIRLTDIITPSERIRK 162 >gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor hydrothermalis 108] gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor hydrothermalis 108] Length = 376 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++ E + + + + I + + +++++ G +I Sbjct: 282 QFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 340 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK I E+ + +N+ +RITD +N + Sbjct: 341 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 376 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 7/216 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 + + +G + ++ V+I+ K+ + F Sbjct: 27 SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPIVSVLKWEELPKEFPVPYVAIKVV 86 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + V + + ++G + E +L LS +++ + + S Sbjct: 87 YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEA-MNQMVGSAST 145 Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201 L+ ++ + +P + + + + + + MTI + + S + +I Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQLI 205 Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 P + + L + + Q E + Sbjct: 206 PVDFAKQLVDAMLKNALGTPAQIETSAQSQQESVKE 241 >gi|167834867|ref|ZP_02461750.1| flagellar motor switch protein FliN [Burkholderia thailandensis MSMB43] Length = 130 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 48 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 107 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 108 NDKFGIRLTDIITPSERIRK 127 >gi|160880834|ref|YP_001559802.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium phytofermentans ISDg] gi|160429500|gb|ABX43063.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium phytofermentans ISDg] Length = 401 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/287 (9%), Positives = 77/287 (26%), Gaps = 34/287 (11%) Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 S++ + + ++ VDI+ +I Sbjct: 133 LSAISEAMNQMMGSASTSLSSMLEKKVDITPPVASIVDIPEVID---------------- 176 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC-- 149 + + V + ++ + ++L ++ + N Sbjct: 177 GGDIAEFLKSRFV-KVSFRMVIGDLVDSELMQLYPF-DFARELYEQFMKYTETETNAADG 234 Query: 150 -ISTTQESSPNLEDFYDIDYLKKNTNRLSN----------EFVTTINMNMTIENVASSFV 198 +E + + + + N + M++ + + Sbjct: 235 YSKPKKEKTVTPDPVETSNNNSFTQDIGKNMNMQTPQMQPQMAQMQGMSLQGMAMPGMSM 294 Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 +PQ + + Q S L + + + + ++++++ Sbjct: 295 QQVPQGMVQNVNIAPAQFQPFVNTGSPLLQTENIDLLLDVPLEVTVELGRTSKSIREILD 354 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 G ++ + NGK + E+ + + + IR+TD I Sbjct: 355 FAPGTIVELNRLAGEPIDVLVNGKYVAKGEVVVIEEAFGIRVTDIIK 401 Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 25/244 (10%), Positives = 68/244 (27%), Gaps = 12/244 (4%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTI----EKISSSLGYLYKKFLPKIFKEKMDL 56 M G + + L + D +++ + + ++ Sbjct: 1 MDGMLSQEEINALLNGMGTENVETAADLESLTDSEIDALGEMSNISMGTAATTLSSLVNQ 60 Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLLENLLGAS 115 V I+ ++ ++ ++ VF N + V + + ++G Sbjct: 61 KVTITTPKVCYAEWEDLLSAYDRPCVFIQIYYKDGLDGNNILVLKEKDVKIITDLMMGGD 120 Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 + + + + S L+ + + +P +D + Sbjct: 121 GLNSEGDLTELHLSAISEAMNQMMGSASTSLSSMLEKKVDITP--PVASIVDIPEVIDGG 178 Query: 176 LSNEFV----TTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP 230 EF+ ++ M I + V S + + P + + + N ++ P Sbjct: 179 DIAEFLKSRFVKVSFRMVIGDLVDSELMQLYPFDFARELYEQFMKYTETETNAADGYSKP 238 Query: 231 FARK 234 K Sbjct: 239 KKEK 242 >gi|76810554|ref|YP_331657.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710b] gi|76580007|gb|ABA49482.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710b] Length = 143 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 61 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 120 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 121 NDKFGIRLTDIITPSERIRK 140 >gi|188592198|ref|YP_001796796.1| flim: flagellar motor switching and energizing component. flin/mopa/spao family. [Cupriavidus taiwanensis LMG 19424] gi|170938572|emb|CAP63559.1| FliM: flagellar motor switching and energizing component. fliN/mopA/spaO family [Cupriavidus taiwanensis LMG 19424] Length = 148 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 66 EMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 125 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 126 NDKFGIRLTDIITPSERIRK 145 >gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae EF01-2] gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae EF01-2] Length = 163 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 80 NRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 139 Query: 293 GKNYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 140 NDKFGIRLTDVVTPSERL 157 >gi|88813209|ref|ZP_01128449.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] gi|88789531|gb|EAR20658.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] Length = 138 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G V+ + NG + E+ V + Sbjct: 59 ILDVPVTLSMELGRTQIDIRNLLQLNQGSVVELDRLAGEPLDVMVNGTLVAHGEVVVVNE 118 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD ++ ++ K Sbjct: 119 RFGIRLTDVVSQGERVRK 136 >gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1] gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1] Length = 288 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 22/236 (9%) Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 + + NL +L + ++G + + +K I+ I ++ +S Sbjct: 58 TAMVALTPNLAASLSDMMMGEDASDRDDVS-----DDDLDASKEIISNIFGAISNSLSAQ 112 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---------- 203 +E I+++ ++++ ++ I ++ S F+ I+ + Sbjct: 113 KEIPVLSFKIDSIEFVGEDSDVSLEDYSKMYVYKFMIGDLTSLFMFILDENLNNSLEGNT 172 Query: 204 -----ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 +++ + S + S + ++ + + + + RI KK LKDV+ Sbjct: 173 KDNSHDSMSPSMSSVSSDYTSNVKLSGEEMNNIS-LIMDVKLPVRVRIGKKKMLLKDVLN 231 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + IG VI + + I E+ V N+ ++IT I ++ L Sbjct: 232 MDIGSVIELNQLANDPLDILVDNHVIAQGEVVIVDGNFGVQITS-IGSKRERLTQL 286 >gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein [Janthinobacterium sp. Marseille] gi|151280202|gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein [Janthinobacterium sp. Marseille] Length = 139 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 59 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 118 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 119 KFGIRLTDIITPAERIRK 136 >gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12] gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12] Length = 106 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 38/94 (40%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q K ++ + V++ I K T+++++ L G ++P Sbjct: 9 QPKQTTLPQEADSEKMDLILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDRLAGDPLD 68 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG + E+ V + +R+TD ++ ++ Sbjct: 69 VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 102 >gi|86146128|ref|ZP_01064454.1| flagellar motor switch protein [Vibrio sp. MED222] gi|148976421|ref|ZP_01813127.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] gi|218708831|ref|YP_002416452.1| flagellar motor switch protein [Vibrio splendidus LGP32] gi|85836075|gb|EAQ54207.1| flagellar motor switch protein [Vibrio sp. MED222] gi|145964244|gb|EDK29500.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] gi|218321850|emb|CAV17825.1| Flagellar motor switch protein fliN [Vibrio splendidus LGP32] Length = 136 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + L S + + + V I + + ++++++ L Sbjct: 24 PSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] Length = 129 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 47 DLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVV 106 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IRITD I ++ + Sbjct: 107 SDKFGIRITDIITPSERMYR 126 >gi|308048760|ref|YP_003912326.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] gi|307630950|gb|ADN75252.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] Length = 129 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 38/110 (34%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 L + Q + + + V I + + ++++++ L G Sbjct: 18 AAALEEQAETVELEQFDAPMGGDSEQQRKLDAILDIPVTISMEVGRSQISIRNLLQLNQG 77 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 V+ + NG + E+ V + IR+TD I+ ++ K Sbjct: 78 SVVELDRVAGEPLDVMVNGTLVAHGEVVVVNDKFGIRLTDVISQTERIKK 127 >gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 112 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 37/97 (38%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + ++ ++ D + V + + + +++++ L G V+ Sbjct: 12 ATFESLQAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGE 71 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ + + IR+TD ++ ++ Sbjct: 72 PLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108 >gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC 43970] gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC 43970] Length = 129 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 47 DLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVV 106 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IRITD I ++ + Sbjct: 107 SDKFGIRITDIITPSERMYR 126 >gi|90411031|ref|ZP_01219045.1| flagellar motor switch protein [Photobacterium profundum 3TCK] gi|90328244|gb|EAS44555.1| flagellar motor switch protein [Photobacterium profundum 3TCK] Length = 129 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 ++S S+D + V I + + ++++++ L G V+ Sbjct: 29 LEELVDESTPISDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 88 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127 >gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC 35937] gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC 35937] Length = 112 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 34/91 (37%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 ++ D + V + + + +++++ L G V+ + Sbjct: 18 QAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NG I E+ + + IR+TD ++ ++ Sbjct: 78 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108 >gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402] Length = 393 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K +K+++ + G +I + N K I E+ + + Sbjct: 315 IMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEE 374 Query: 295 NYTIRITDRINFDQKSLK 312 ++ +RIT+ ++ ++ Sbjct: 375 SFGVRITEILSPAERISD 392 >gi|289208345|ref|YP_003460411.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix] gi|288943976|gb|ADC71675.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix] Length = 203 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 5/111 (4%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P L++ + +L + + V I I + +++++ L Sbjct: 96 PDPEAEPLKPEELAASAGMSAEDINL-----QMVLDVPVTISMEIGRSRIPIRNLLQLNQ 150 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + + IR+TD I+ ++ K Sbjct: 151 GSVVELDRLAGEALDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIRK 201 >gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2143] gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2143] Length = 152 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + + ++++++ L G VI + NG I E+ V + Sbjct: 73 IMDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 133 KFGIRMTDVISPSERIKK 150 >gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC 35405] gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola] gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC 35405] Length = 393 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K +K+++ + G +I + N K I E+ + + Sbjct: 315 IMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEE 374 Query: 295 NYTIRITDRINFDQKSLK 312 ++ +RIT+ ++ ++ Sbjct: 375 SFGVRITEILSPAERISD 392 >gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118] gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118] Length = 112 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 Q ++ D + V + + + +++++ L G V+ + Sbjct: 18 QAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NG I E+ + + IR+TD ++ ++ Sbjct: 78 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108 >gi|90579935|ref|ZP_01235743.1| flagellar motor switch protein [Vibrio angustum S14] gi|90438820|gb|EAS64003.1| flagellar motor switch protein [Vibrio angustum S14] Length = 129 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + ++D + V I + + ++++++ L G V+ Sbjct: 29 LEELTDDTVAITDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 88 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127 >gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118] gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118] Length = 139 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 55 NRVLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 114 Query: 293 GKNYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 115 NDKFGIRLTDVVTPSERL 132 >gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 112 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 34/91 (37%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 ++ D + V + + + +++++ L G V+ + Sbjct: 18 QAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NG I E+ + + IR+TD ++ ++ Sbjct: 78 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108 >gi|209522294|ref|ZP_03270921.1| flagellar motor switch protein FliN [Burkholderia sp. H160] gi|209497270|gb|EDZ97498.1| flagellar motor switch protein FliN [Burkholderia sp. H160] Length = 153 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 71 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 130 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 131 NDKFGIRLTDIITPSERIRK 150 >gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira defluvii] gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira defluvii] Length = 124 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + +I + +++++ L G VI + N K + E+ V + Sbjct: 45 VLDIPLQVTVQIGSTRMLIRELLQLGQGSVIELNKLAGEPMEVLVNNKLVARGEVVVVNE 104 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD ++ +Q+ Sbjct: 105 KFGIRLTDVVSPNQRI 120 >gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus AHT2] gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus AHT2] Length = 134 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 30/103 (29%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + + + + + + ++ L G VI Sbjct: 28 PDFDELSADAGSPAPSTASTGSQNLDFLLDVPLEVSVELGRTSMIINKMLQLTQGSVIEL 87 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K + E+ V + + IR+T+ I+ + Sbjct: 88 DKAAGEPVEIFVNQKLMGKGEVVVVNERFGIRVTEIISQADRI 130 >gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] Length = 389 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + K ++ D++ L G +I + N K + E+ + Sbjct: 307 DMLLDVPLKVTVELGRTKQSISDILDLSAGSIIELDKLAGEPVDILVNEKLVAEGEVVVI 366 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +R+TD I+ + Sbjct: 367 EENFGVRVTDIISQTDRI 384 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 22/198 (11%), Positives = 58/198 (29%), Gaps = 4/198 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQA 86 +G + ++ V+I+ S + + + I + E Sbjct: 36 SSIEIDALGEIGNISFGSSATTLSTLLNQKVEITTPSVEVIEKADIDNEVTFEPVSVQVN 95 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + +S + + +LG T + N + ++ + + + + Sbjct: 96 YIDGFSGKNVFVIKARDAAIIADIMLGGDGTTPDETLNDIHLSAVQETMNQMMGAAATSM 155 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + + SP D NT + + +T+ N + S+ + +IP Sbjct: 156 STVFDMKVDISPPEIINGIEDN--ANTVVFDEDVYVKVFFRLTVGNLIDSNMMQLIPLSF 213 Query: 206 LLKTTLISLSSQNKSENQ 223 + L + + Sbjct: 214 ARQLVDQLLHAPTEEAAV 231 >gi|84388119|ref|ZP_00991015.1| flagellar motor switch protein [Vibrio splendidus 12B01] gi|84377186|gb|EAP94056.1| flagellar motor switch protein [Vibrio splendidus 12B01] Length = 136 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + L S + + + V I + + ++++++ L Sbjct: 24 PSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17] gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17] Length = 172 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + +++++ L G VI + NG I E+ V Sbjct: 92 IMDIPVTISMEVGNTMIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVND 151 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD ++ ++ Sbjct: 152 KFGIRLTDVMSPGERI 167 >gi|253996307|ref|YP_003048371.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8] gi|253982986|gb|ACT47844.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8] Length = 157 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 77 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 136 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 137 KFGIRLTDIITPAERIRK 154 >gi|78064700|ref|YP_367469.1| Type III secretion system outer membrane O protein [Burkholderia sp. 383] gi|77965445|gb|ABB06825.1| Type III secretion system outer membrane O protein [Burkholderia sp. 383] Length = 163 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 81 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 140 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 141 NDKFGIRLTDIITPAERIRK 160 >gi|330445374|ref|ZP_08309026.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489565|dbj|GAA03523.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 129 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 ++S ++D + V I + + ++++++ L G V+ Sbjct: 29 LEELTDESTPITDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 88 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127 >gi|297538202|ref|YP_003673971.1| flagellar motor switch protein FliN [Methylotenera sp. 301] gi|297257549|gb|ADI29394.1| flagellar motor switch protein FliN [Methylotenera sp. 301] Length = 157 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 77 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 136 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 137 KFGIRLTDIITPAERIRK 154 >gi|115350087|ref|YP_771926.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD] gi|115280075|gb|ABI85592.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD] Length = 161 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 79 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 138 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 139 NDKFGIRLTDIITPAERIRK 158 >gi|54294678|ref|YP_127093.1| flagellar motor switch protein FliN [Legionella pneumophila str. Lens] gi|53754510|emb|CAH15994.1| Flagellar motor switch protein FliN [Legionella pneumophila str. Lens] Length = 109 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q N + V++ I K T+++++ L G ++ Sbjct: 14 QGNPLNPDPGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 71 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG + E+ V + +R+TD ++ ++ Sbjct: 72 VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 105 >gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 381 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + + + I + K +KD++ L G +I + Sbjct: 285 DEEPSIEGKEEKENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDI 344 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 ANGK I E+ + +N+ +RI D ++ ++ Sbjct: 345 LANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 377 >gi|237799246|ref|ZP_04587707.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022101|gb|EGI02158.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 153 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 74 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 133 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 134 KFGIRLTDVISPSERIKK 151 >gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus degradans 2-40] gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40] Length = 135 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + T+++++ L G VI + NG I E+ V + Sbjct: 56 ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 115 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 116 KFGIRMTDVISPSERIKK 133 >gi|26991046|ref|NP_746471.1| flagellar motor switch protein [Pseudomonas putida KT2440] gi|24986078|gb|AAN69935.1|AE016632_6 flagellar motor switch protein FliN [Pseudomonas putida KT2440] Length = 161 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + VNI + + +++++ L G VI + NG I E+ V + Sbjct: 82 ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 141 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 142 KFGIRLTDVISPSERIKK 159 >gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB 8052] gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB 8052] Length = 398 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 38/78 (48%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++I + K +++D++ L G +I + + NGK+I E+ V Sbjct: 317 DLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALGEVVVV 376 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ IRIT+ ++ ++ Sbjct: 377 DENFGIRITNIVSSVERI 394 >gi|226941270|ref|YP_002796344.1| FliN [Laribacter hongkongensis HLHK9] gi|226716197|gb|ACO75335.1| FliN [Laribacter hongkongensis HLHK9] Length = 141 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + VN+ + K +++++ L G V+ + NG I E+ V Sbjct: 59 DMILDIPVNMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 118 Query: 293 GKNYTIRITDRINFDQKS 310 + IR+TD I ++ Sbjct: 119 NDKFGIRLTDIITPAERL 136 >gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum sp. MED92] gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum sp. MED92] Length = 144 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++ L G VI + NG I E+ V Sbjct: 65 ILDIPVTLSMEVGQTDIPISNLLQLNQGSVIELDRVAGEPLDVMVNGTLIAHGEVVVVND 124 Query: 295 NYTIRITDRINFDQKS 310 Y IR+TD I+ ++ Sbjct: 125 RYGIRLTDVISPQERI 140 >gi|330961231|gb|EGH61491.1| flagellar motor switch protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 153 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 74 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 133 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 134 KFGIRLTDVISPSERIKK 151 >gi|302338091|ref|YP_003803297.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM 11293] gi|301635276|gb|ADK80703.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM 11293] Length = 375 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K +KD++ + G +I + N K I E+ + + Sbjct: 296 LMDVYMEMTVELGRTKRLIKDILGMGEGTIIELDKLAGEPVDILVNHKLIAKGEVVVIDE 355 Query: 295 NYTIRITDRINFDQKS 310 N+ +R+T+ ++ + Sbjct: 356 NFGVRVTEIVSPMDRV 371 >gi|170737014|ref|YP_001778274.1| surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia MC0-3] gi|169819202|gb|ACA93784.1| surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia MC0-3] Length = 290 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 82/298 (27%), Gaps = 41/298 (13%) Query: 13 LHPILLARLTGKLGDKKTIE--KISSSLGYLYKKFLPKIFKEKMDLDV-DISYTSCQSGK 69 L P L R L D +I SL + + V +IS + +S Sbjct: 31 LDPCTLGRPYHLLEDVLQDIKRRIDHSLHERF------NLRRGTSFVVTEISVAAMRSR- 83 Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 V+ + + C L++ LL G S + + Sbjct: 84 ---------NAAVWRTYAC--TRGQISVRCDRELLLALLACHYGTSLDEAVPTAPAPETG 132 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E++ + + + + L D + + V + ++ Sbjct: 133 AERRFSAQQHTALLTAFASAM---------LGDQAEPFSPNGDMLPGPGVRVLRMTISDR 183 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + V + + L L +Q+ + + V I + K Sbjct: 184 LRKVGGDVEFALD-DMWLDHLFARLDAQHLRPAPDSAQANV------SIPVTISVHVLSK 236 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L +++ ++ G V+P + N +Y L + IT + Sbjct: 237 NMRLDELLRMRPGDVLPVRLP--ETVDVLVNNVRLYRAALAEHQG--ALWITSFEPVE 290 >gi|107021593|ref|YP_619920.1| flagellar motor switch FliN [Burkholderia cenocepacia AU 1054] gi|116688063|ref|YP_833686.1| flagellar motor switch protein FliN [Burkholderia cenocepacia HI2424] gi|170731413|ref|YP_001763360.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] gi|105891782|gb|ABF74947.1| Flagellar motor switch FliN [Burkholderia cenocepacia AU 1054] gi|116646152|gb|ABK06793.1| flagellar motor switch protein FliN [Burkholderia cenocepacia HI2424] gi|169814655|gb|ACA89238.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] Length = 162 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 80 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 139 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 140 NDKFGIRLTDIITPAERIRK 159 >gi|83721171|ref|YP_440588.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|83654996|gb|ABC39059.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] Length = 143 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 61 DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 120 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 121 NDKFGIRLTDIITPSERIRK 140 >gi|77457774|ref|YP_347279.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] gi|77381777|gb|ABA73290.1| putative flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] Length = 152 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 1/147 (0%) Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE- 225 D ++ L++E+ + +L T L + +N Sbjct: 4 DMNTQDDQALADEWAAALEETGEAGQADIDALLAADAGTSSSNRLPMEEFGSVPKNNDPV 63 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 L P + V+I + +++++ L G VI + NG I Sbjct: 64 TLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 123 Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312 E+ V + + IR+TD I+ ++ K Sbjct: 124 HGEVVVVNEKFGIRLTDVISPSERIKK 150 >gi|134294172|ref|YP_001117907.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4] gi|134137329|gb|ABO53072.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4] Length = 169 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG + E+ V Sbjct: 87 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLLAQGEVVVV 146 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 147 NDKFGIRLTDIITPAERIRK 166 >gi|5921671|gb|AAD56295.1| FliN [Pseudomonas putida] gi|313497807|gb|ADR59173.1| FliN [Pseudomonas putida BIRD-1] Length = 160 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + VNI + + +++++ L G VI + NG I E+ V + Sbjct: 81 ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 140 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 141 KFGIRLTDVISPSERIKK 158 >gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor owensensis OL] gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor owensensis OL] Length = 376 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++ E + + + + I + + +++++ G +I Sbjct: 282 QFESFDEEEERKYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 340 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK I E+ + +N+ +RITD +N + Sbjct: 341 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 376 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 63/201 (31%), Gaps = 7/201 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86 + + +G + ++ V+I+ K+ + F Sbjct: 27 SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSVLKWDELPKEFPVPYVAIKVV 86 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + V + + ++G + E QL LS +++ + + S Sbjct: 87 YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEQLTELQLSAIQEA-MNQMVGSAST 145 Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201 L+ ++ + +P + + + + + I MTI + + S + +I Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKIAFRMTIGDLIDSQIMQLI 205 Query: 202 PQETLLKTTLISLSSQNKSEN 222 P + + L + + + Sbjct: 206 PVDFAKQLVDAMLRNTLGTSD 226 >gi|296135699|ref|YP_003642941.1| flagellar motor switch protein FliN [Thiomonas intermedia K12] gi|295795821|gb|ADG30611.1| flagellar motor switch protein FliN [Thiomonas intermedia K12] Length = 144 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 63 DLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEVVLV 122 Query: 293 GKNYTIRITDRINFDQK 309 + IR+TD ++ ++ Sbjct: 123 NDKFGIRLTDIVSPTER 139 >gi|167579275|ref|ZP_02372149.1| flagellar motor switch protein FliN [Burkholderia thailandensis TXDOH] gi|167617381|ref|ZP_02386012.1| flagellar motor switch protein FliN [Burkholderia thailandensis Bt4] Length = 165 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 83 DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 142 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 143 NDKFGIRLTDIITPSERIRK 162 >gi|254491664|ref|ZP_05104843.1| flagellar motor switch protein FliN [Methylophaga thiooxidans DMS010] gi|224463142|gb|EEF79412.1| flagellar motor switch protein FliN [Methylophaga thiooxydans DMS010] Length = 155 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V I I + ++++++ L G V+ + N I E+ V Sbjct: 74 DMVMDIPVTISMEIGRTRISIRNLLQLSQGSVVELDRLAGEPMDVLVNDTLIAHGEVVVV 133 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 134 NDKFGIRLTDVISASERIKK 153 >gi|91776322|ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus flagellatus KT] gi|91710309|gb|ABE50237.1| Flagellar motor switch FliN [Methylobacillus flagellatus KT] Length = 142 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 62 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 121 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 122 KFGIRLTDIITPAERIRK 139 >gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM 12260] gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM 12260] Length = 374 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V I + + T+ +V+ + G V+ + NGK + E+ + Sbjct: 292 DLIVDIPVRITVELGRARKTIGEVLGMGPGSVVELNRMAGEPVDVLVNGKLMARGEVVVI 351 Query: 293 GKNYTIRITDRINFDQKS 310 +++ IR+T+ ++ ++ Sbjct: 352 DESFGIRVTEIVSRAERI 369 >gi|52842018|ref|YP_095817.1| flagellar motor switch protein FliN [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|296107382|ref|YP_003619082.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila 2300/99 Alcoy] gi|52629129|gb|AAU27870.1| flagellar motor switch protein FliN [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|295649283|gb|ADG25130.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila 2300/99 Alcoy] gi|307610491|emb|CBX00063.1| flagellar motor switch protein FliN [Legionella pneumophila 130b] Length = 109 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q N + V++ I K T+++++ L G ++ Sbjct: 14 QGNPLNPDPGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 71 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG + E+ V + +R+TD ++ ++ Sbjct: 72 VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 105 >gi|171316889|ref|ZP_02906098.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5] gi|171097970|gb|EDT42788.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5] Length = 172 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 90 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 149 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 150 NDKFGIRLTDIITPAERIRK 169 >gi|257095346|ref|YP_003168987.1| flagellar motor switch protein FliN [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047870|gb|ACV37058.1| flagellar motor switch protein FliN [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 145 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 63 DMILDIPVQLAVELGRTRITIKNLLQLAHGSVVELDAMAGEPLNVFVNGTLIAQGEVVVV 122 Query: 293 GKNYTIRITDRINFDQK 309 + IR+TD + ++ Sbjct: 123 NDKFGIRLTDIVTPAER 139 >gi|294339870|emb|CAZ88233.1| Flagellar motor switch protein fliN [Thiomonas sp. 3As] Length = 144 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 63 DLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEVVLV 122 Query: 293 GKNYTIRITDRINFDQK 309 + IR+TD ++ ++ Sbjct: 123 NDKFGIRLTDIVSPTER 139 >gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2] gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2] Length = 133 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 4/112 (3%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVT 258 Q L L++ +S + D + + +++ I + L++V+ Sbjct: 17 QPELSPDELMAQQFAQESYGSETEEEDRIEKSKFSILLDVPLDVIVEIGSTQMPLEEVLK 76 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L V+ L NGK I EL V N+ ++IT + +++ Sbjct: 77 LNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTVKNNFGLKITHVVTPEERL 128 >gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str. Corby] gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str. Corby] Length = 109 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q N + V++ I K T+++++ L G ++ Sbjct: 14 QGNPLNPDPGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 71 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG + E+ V + +R+TD ++ ++ Sbjct: 72 VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 105 >gi|330808226|ref|YP_004352688.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376334|gb|AEA67684.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 152 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 133 KFGIRLTDVISPSERIKK 150 >gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea MMB-1] gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea MMB-1] Length = 150 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + VN+ + +++++ L G V+ + NG I E+ V Sbjct: 69 DLIMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVVV 128 Query: 293 GKNYTIRITDRINFDQKS 310 Y IR+TD ++ ++ Sbjct: 129 NDKYGIRLTDVVSPSERI 146 >gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91] gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91] Length = 157 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 IP E L K + + + + V + + + +K+++ L Sbjct: 46 IPDEDLTKPSSVFEQFSRNNVLNDTRNDIDM---ILDIPVQLTVELGRTRIAIKNLLQLA 102 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G VI + NG I E+ V + + IR+TD I ++ K Sbjct: 103 QGSVIELDGMAGEPMDVLVNGCLIAQGEVVVVNEKFGIRLTDIITPSERIRK 154 >gi|254194758|ref|ZP_04901189.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13] gi|169651508|gb|EDS84201.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13] Length = 165 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 83 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLINGCLIAQGEVVVV 142 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 143 NDKFGIRLTDIITPSERIRK 162 >gi|187925748|ref|YP_001897390.1| flagellar motor switch protein FliN [Burkholderia phytofirmans PsJN] gi|187716942|gb|ACD18166.1| flagellar motor switch protein FliN [Burkholderia phytofirmans PsJN] Length = 154 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 72 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 132 NDKFGIRLTDIITPSERIRK 151 >gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermodesulfobium narugense DSM 14796] gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermodesulfobium narugense DSM 14796] Length = 386 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + K TLKDV+ L+ G VI + N + I E+ + Sbjct: 306 ENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMINDELIARGEVVVI 365 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ IRIT+ I+ ++ Sbjct: 366 DENFGIRITEIISPRERL 383 >gi|254246640|ref|ZP_04939961.1| Surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia PC184] gi|124871416|gb|EAY63132.1| Surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia PC184] Length = 164 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 82 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 141 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 142 NDKFGIRLTDIITPAERIRK 161 >gi|291613060|ref|YP_003523217.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus ES-1] gi|291583172|gb|ADE10830.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus ES-1] Length = 135 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 53 DMILDIPVKLTVELGHTKMPIKNLLQLAQGSVVELAGLAGEPLDVLINGFLIAQGEVVVV 112 Query: 293 GKNYTIRITDRINFDQKS 310 IR+TD I ++ Sbjct: 113 NDKLGIRLTDIITPSERL 130 >gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901] gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901] Length = 147 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + T+++++ L G VI + NG I E+ V + Sbjct: 68 ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 127 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 128 KFGIRMTDVISPSERIKK 145 >gi|170694406|ref|ZP_02885560.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M] gi|170140829|gb|EDT09003.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M] Length = 155 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 73 DMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 132 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 133 NDKFGIRLTDIITPSERIRK 152 >gi|89075521|ref|ZP_01161932.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89048793|gb|EAR54364.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 129 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +++ ++D + V I + + ++++++ L G V+ Sbjct: 29 LEELTDETVPITDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 88 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127 >gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9] gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9] Length = 261 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 79/265 (29%), Gaps = 22/265 (8%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + L K F + ++ S + + + ++ +F S F + Sbjct: 16 FCGALAKPFSDACTSTWHLAL-STEPVPTA---PALEDAVIFRCTFSGEVSGQGFALLRH 71 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 V+TL + L Q +S + +E Sbjct: 72 AEVVTL--------GLQDMLDDTDAFGDEHAMALSSIFEASCNELCQHLSQKSPVTVQVE 123 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 + + + E +++ + L TT + S+Q S Sbjct: 124 RMSAPELP----------TDRLAELFLEAEGTKIRVSILLFFDQQLVTTYQNASAQTFSF 173 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + + +N+ R ++ +L++V+ L G V+ + L +G Sbjct: 174 PEVTGTSTSNLNLVLDVELNVTLRFGQRQLSLREVLDLTSGSVVELDRQVDEPVELVLDG 233 Query: 282 KEIYSCELGRVGKNYTIRITDRINF 306 K + E + NY +RIT + Sbjct: 234 KVVARGEAVIIDGNYGMRITQVLQQ 258 >gi|28899015|ref|NP_798620.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836941|ref|ZP_01989608.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|260365239|ref|ZP_05777796.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030] gi|260878789|ref|ZP_05891144.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AN-5034] gi|260897384|ref|ZP_05905880.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus Peru-466] gi|260899943|ref|ZP_05908338.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AQ4037] gi|4322005|gb|AAD15908.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus] gi|28807234|dbj|BAC60504.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus RIMD 2210633] gi|149749714|gb|EDM60459.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|308088279|gb|EFO37974.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus Peru-466] gi|308094260|gb|EFO43955.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AN-5034] gi|308107230|gb|EFO44770.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AQ4037] gi|308115407|gb|EFO52947.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030] gi|328474448|gb|EGF45253.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329] Length = 136 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + D + V I + + ++++++ L Sbjct: 24 PSIDVDEVLAAPLEELKDTSRPITDDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|269103168|ref|ZP_06155865.1| flagellar motor switch protein FliN [Photobacterium damselae subsp. damselae CIP 102761] gi|268163066|gb|EEZ41562.1| flagellar motor switch protein FliN [Photobacterium damselae subsp. damselae CIP 102761] Length = 128 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + S S+D + V I + + ++++++ L G V+ Sbjct: 28 LEELTDDSAPVSDDERRKL-DSILDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRVAG 86 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 87 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 126 >gi|149188093|ref|ZP_01866388.1| flagellar motor switch protein [Vibrio shilonii AK1] gi|148838081|gb|EDL55023.1| flagellar motor switch protein [Vibrio shilonii AK1] Length = 136 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P+ + + L S + + V I + + ++++++ L Sbjct: 24 PEIDVDEVLAAPLDELQDSPAPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|332531131|ref|ZP_08407045.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624] gi|332039416|gb|EGI75828.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624] Length = 122 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 7/106 (6%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + ++S S++ + + V + + K +K ++ L G V Sbjct: 17 AVEPGGVLSESARGDAPAAD-------INMVLDIPVQLSVELGRTKVPIKHILQLGQGSV 69 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NG I E+ V + IR+TD + ++ Sbjct: 70 VELDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERL 115 >gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018] gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018] Length = 289 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 93/287 (32%), Gaps = 19/287 (6%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 ++S L + K L ++ + + S + K + E + + SS Sbjct: 1 MASDLSNILKSELANTLEQLLSKKTKVD--SVEKFKNDTNLTQLIE--CNVKLDMKGLSS 56 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL-NQCIST 152 +LG E + + + + + + S ++ Q +S Sbjct: 57 RIHFYIPAVSATKFEYLMLGGMGELKESIDDETTDAINE-IISNICGSFSTLVNAQGLSD 115 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN------------MTIENVASSFVLI 200 ++ ++ + + EF +++ + + + Sbjct: 116 VGSIKSEIKSTIKVENSVLSAKDDAYEFTISLDDEKYKLMVVFDKLLLPYFSAITGIYQE 175 Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 P+ + +T +S ++ + + + Y + + + R+ K LKD++ Sbjct: 176 EPKVQVTPSTPVSNNTGSSNNSSVTPTSKNL-ELLYNVKLKLSVRLGTKIVLLKDILRWD 234 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G++I + NG +I E V + ++I IN D Sbjct: 235 VGEIIELEQMVNEPLEILINGVKIGEGEAVIVEGKFGLKIKRIINED 281 >gi|186477686|ref|YP_001859156.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815] gi|184194145|gb|ACC72110.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815] Length = 154 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 72 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 132 NDKFGIRLTDIITPSERIRK 151 >gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893] gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893] Length = 172 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG I E+ V + Sbjct: 92 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 151 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 152 KFGIRLTDVISPGERI 167 >gi|71733965|ref|YP_275530.1| flagellar motor switch protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484905|ref|ZP_05638946.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629022|ref|ZP_06461976.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651612|ref|ZP_06482955.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487823|ref|ZP_07005863.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554518|gb|AAZ33729.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157548|gb|EFH98628.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325125|gb|EFW81194.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329384|gb|EFW85377.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330866456|gb|EGH01165.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889049|gb|EGH21710.1| flagellar motor switch protein [Pseudomonas syringae pv. mori str. 301020] gi|330986500|gb|EGH84603.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011075|gb|EGH91131.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 152 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 133 KFGIRLTDVISPSERIKK 150 >gi|330972447|gb|EGH72513.1| flagellar motor switch protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 152 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 133 KFGIRLTDVISPSERIKK 150 >gi|170722846|ref|YP_001750534.1| flagellar motor switch protein [Pseudomonas putida W619] gi|169760849|gb|ACA74165.1| flagellar motor switch protein FliN [Pseudomonas putida W619] Length = 154 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 1/147 (0%) Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE- 225 + L++E+ + +L + L + + Sbjct: 6 EITSPEDQALADEWAAALEETGDAGQADIDALLGGDGGSAGAGRLPMEEFASSPRPKENV 65 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 L P + VNI + + +++++ L G VI + NG I Sbjct: 66 SLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 125 Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312 E+ V + + IR+TD I+ ++ K Sbjct: 126 HGEVVVVNEKFGIRLTDVISPSERIKK 152 >gi|28869174|ref|NP_791793.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato str. DC3000] gi|213967549|ref|ZP_03395697.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato T1] gi|301382886|ref|ZP_07231304.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato Max13] gi|302061096|ref|ZP_07252637.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato K40] gi|302131288|ref|ZP_07257278.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852414|gb|AAO55488.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato str. DC3000] gi|213927850|gb|EEB61397.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato T1] gi|330876027|gb|EGH10176.1| flagellar motor switch protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964685|gb|EGH64945.1| flagellar motor switch protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 152 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 133 KFGIRLTDVISPSERIKK 150 >gi|77359749|ref|YP_339324.1| flagellar motor switch protein [Pseudoalteromonas haloplanktis TAC125] gi|76874660|emb|CAI85881.1| flagellar biosynthesis; component of motor switch and energizing [Pseudoalteromonas haloplanktis TAC125] Length = 132 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + S D + V I + K +++++ L G V+ Sbjct: 32 LDELSDAKHEISGDEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAG 90 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 91 EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130 >gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis] gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis] Length = 150 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + T+++++ L G VI + NG I E+ V + Sbjct: 71 ILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 130 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 131 KFGIRMTDVISPSERIKK 148 >gi|330953759|gb|EGH54019.1| flagellar motor switch protein [Pseudomonas syringae Cit 7] Length = 152 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 133 KFGIRLTDVISPSERIKK 150 >gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus c2] gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus c2] Length = 139 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + I ++ ++ L G ++ + NG I E+ + Sbjct: 58 EVLMDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRLAGEPLDVLVNGTLIARGEVVVI 117 Query: 293 GKNYTIRITDRINFDQKSLK 312 + + IR+TD I+ ++ K Sbjct: 118 NEKFGIRLTDVISPAERLRK 137 >gi|212634375|ref|YP_002310900.1| flagellar motor switch protein [Shewanella piezotolerans WP3] gi|212555859|gb|ACJ28313.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] Length = 126 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + SE+ + V I + +++++ L G V+ Sbjct: 26 LDEFSSDAAPLSEEEASKL-DAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAG 84 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 85 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 124 >gi|66046675|ref|YP_236516.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae B728a] gi|289678974|ref|ZP_06499864.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae FF5] gi|63257382|gb|AAY38478.1| Surface presentation of antigens (SPOA) protein [Pseudomonas syringae pv. syringae B728a] gi|330899438|gb|EGH30857.1| flagellar motor switch protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940698|gb|EGH43709.1| flagellar motor switch protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330976006|gb|EGH76072.1| flagellar motor switch protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 152 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 133 KFGIRLTDVISPSERIKK 150 >gi|323527700|ref|YP_004229853.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001] gi|323384702|gb|ADX56793.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001] Length = 155 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 73 DMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 132 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 133 NDKFGIRLTDIITPSERIRK 152 >gi|242281270|ref|YP_002993399.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM 2638] gi|242124164|gb|ACS81860.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM 2638] Length = 229 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ + K + +++ L G V+ + NGK + E + + Sbjct: 150 ILDIPLDVSAELGRAKMLINELLQLGTGSVVELTKLAGEPLEIYVNGKLVARGEAVVINE 209 Query: 295 NYTIRITDRINFDQKSLKNF 314 + IR+TD I+ ++ +K+ Sbjct: 210 KFGIRLTDIISPIER-VKHL 228 >gi|71906404|ref|YP_283991.1| Type III secretion system outer membrane O protein [Dechloromonas aromatica RCB] gi|71846025|gb|AAZ45521.1| Type III secretion system outer membrane O protein [Dechloromonas aromatica RCB] Length = 147 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V I + K T+K+++ L G V+ + NG I E+ V Sbjct: 65 DMILDIPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVVV 124 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 125 NDKFGIRLTDIITPSERMRK 144 >gi|331016993|gb|EGH97049.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 152 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 133 KFGIRLTDVISPSERIKK 150 >gi|312962265|ref|ZP_07776757.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens WH6] gi|311283602|gb|EFQ62191.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens WH6] Length = 155 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 76 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 136 KFGIRLTDVISPSERIKK 153 >gi|295678045|ref|YP_003606569.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002] gi|295437888|gb|ADG17058.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002] Length = 154 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 72 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 132 NDKFGIRLTDIITPSERIRK 151 >gi|56460300|ref|YP_155581.1| flagellar motor switch protein [Idiomarina loihiensis L2TR] gi|56179310|gb|AAV82032.1| Flagellar motor switch [Idiomarina loihiensis L2TR] Length = 151 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + L ++ + +E+ + V I + + ++++++ L G Sbjct: 41 HSGMDNVQTAELEELSEDKPVTEEEKRKL-DAILDIPVTISMEVGRSQISIRNLLQLNQG 99 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 100 SVVELERVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIRK 149 >gi|226313057|ref|YP_002772951.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC 100599] gi|226096005|dbj|BAH44447.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC 100599] Length = 455 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 34/80 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + K +++++ L G +I + N K I E+ + Sbjct: 374 NLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAKGEVVVI 433 Query: 293 GKNYTIRITDRINFDQKSLK 312 +N+ +R+TD I+ + K Sbjct: 434 DENFGVRVTDIISQIDRVQK 453 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 10/188 (5%), Positives = 48/188 (25%), Gaps = 6/188 (3%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90 + +G + + VDI+ + + F Sbjct: 44 QDALGEIGNISFGSAATALSTLLSQKVDITTPTVSVVNVDELESEFPIPHVAVHVEYTDG 103 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + ++G + + ++ + + + ++ Sbjct: 104 FKGINLLVIRMEDAAVIADLMMGGDGRPASTEMSELHISAVQEAMNQMMGSAATSMSTIF 163 Query: 151 STTQESSPN-LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA----SSFVLIIPQET 205 + +P ++ ++ + + ++ + + S+ + ++P Sbjct: 164 NQFINITPPGIDVMDLAQGKGGDSFSDDDSPLVKVSFRLKVGEHGELIDSNIMQLLPLSF 223 Query: 206 LLKTTLIS 213 K Sbjct: 224 AKKMIDRL 231 >gi|167034914|ref|YP_001670145.1| flagellar motor switch protein [Pseudomonas putida GB-1] gi|166861402|gb|ABY99809.1| flagellar motor switch protein FliN [Pseudomonas putida GB-1] Length = 154 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 1/147 (0%) Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSE 225 + L++E+ + + +L + L + N++ Sbjct: 6 EITSAEDQALADEWAAALEETGSAGQADIDALLGGDAGSSGSGRLPMEEFASSPKPNENV 65 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 L P + VNI + + +++++ L G VI + NG I Sbjct: 66 SLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 125 Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312 E+ V + + IR+TD I+ ++ K Sbjct: 126 HGEVVVVNEKFGIRLTDVISPSERIKK 152 >gi|302185373|ref|ZP_07262046.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae 642] Length = 152 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 133 KFGIRLTDVISPSERIKK 150 >gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42] gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY] gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42] gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY] Length = 149 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 68 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 127 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 128 KFGIRLTDVVTPSERL 143 >gi|259907614|ref|YP_002647970.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96] gi|224963236|emb|CAX54720.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96] gi|283477456|emb|CAY73372.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163] gi|310764880|gb|ADP09830.1| Flagellar motor switch protein FliN [Erwinia sp. Ejp617] Length = 124 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 42 NLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 101 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IRITD I ++ + Sbjct: 102 SDKFGIRITDIITPSERMHR 121 >gi|163750542|ref|ZP_02157780.1| flagellar motor switch protein [Shewanella benthica KT99] gi|161329697|gb|EDQ00686.1| flagellar motor switch protein [Shewanella benthica KT99] Length = 127 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 42/122 (34%) Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 E+ + + ++ + + + L + V I + Sbjct: 4 EDTGDDWAAAMAEQAIEEAQAVELDELTDESQVFPADEAVKFDTIMDIPVTISMEVGRSF 63 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 ++++++ L G V+ + NG I E+ V + IR+TD I+ ++ Sbjct: 64 ISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI 123 Query: 311 LK 312 K Sbjct: 124 KK 125 >gi|83647848|ref|YP_436283.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396] gi|83635891|gb|ABC31858.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396] Length = 172 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG I E+ V + Sbjct: 92 ILDIPVTISMEVGNTQIAIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 151 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 152 KFGIRLTDVISPSERIKK 169 >gi|30248479|ref|NP_840549.1| flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718] gi|30138365|emb|CAD84374.1| possible flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718] Length = 157 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + +K+++ L G V+ + NG I E+ V Sbjct: 75 DMILDIPVQLTVELGRTRIAIKNLLQLAQGSVVELNGMAGEPMDVLVNGCLIAQGEVVVV 134 Query: 293 GKNYTIRITDRINFDQKSLK 312 + + IR+TD I ++ K Sbjct: 135 NEKFGIRLTDIITPSERIRK 154 >gi|292489154|ref|YP_003532041.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|292900272|ref|YP_003539641.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291200120|emb|CBJ47246.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291554588|emb|CBA22222.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] Length = 124 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 42 NLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 101 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IRITD I ++ + Sbjct: 102 SDKFGIRITDIITPSERMHR 121 >gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 83 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 1 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 60 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RITD I ++ Sbjct: 61 ADKYGVRITDIITPSERM 78 >gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter carbinolicus DSM 2380] gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter carbinolicus DSM 2380] Length = 103 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + I + +KD++ L+ G +I L N + I E V Sbjct: 24 LLDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGEPLDLYVNSRLIARGEAVMVKD 83 Query: 295 NYTIRITDRINFDQKS 310 Y +R+TD ++ ++ Sbjct: 84 RYGLRLTDVVSPAERL 99 >gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8] gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8] Length = 166 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG I E+ V + Sbjct: 86 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 145 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 146 KFGIRLTDVISPGERI 161 >gi|300311367|ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum seropedicae SmR1] gi|300074152|gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 71 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 130 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 131 KFGIRLTDIITPAERIRK 148 >gi|300113611|ref|YP_003760186.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113] gi|299539548|gb|ADJ27865.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113] Length = 153 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + I + ++++++ L G V+ + NG I EL V Sbjct: 72 ELILDIPVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVV 131 Query: 293 GKNYTIRITDRINFDQKS 310 + + IR+TD I+ ++ Sbjct: 132 NEKFGIRLTDVISAPERV 149 >gi|300696947|ref|YP_003747608.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum CFBP2957] gi|299073671|emb|CBJ53191.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum CFBP2957] Length = 163 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 81 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 140 Query: 293 GKNYTIRITDRINFDQKS 310 + + IR+TD I ++ Sbjct: 141 NEKFGIRLTDIITPSERI 158 >gi|147674715|ref|YP_001217647.1| flagellar motor switch protein [Vibrio cholerae O395] gi|146316598|gb|ABQ21137.1| flagellar motor switch protein FliN [Vibrio cholerae O395] gi|227014021|gb|ACP10231.1| flagellar motor switch protein FliN [Vibrio cholerae O395] Length = 138 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + D + V I + K ++++++ L Sbjct: 26 PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 85 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 86 GSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 136 >gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01] gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01] Length = 155 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + T+++++ L G VI + NG I E+ V + Sbjct: 76 ILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 136 KFGIRLTDVISPSERIKK 153 >gi|262167484|ref|ZP_06035190.1| flagellar motor switch protein FliN [Vibrio cholerae RC27] gi|262024056|gb|EEY42751.1| flagellar motor switch protein FliN [Vibrio cholerae RC27] Length = 136 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + D + V I + K ++++++ L Sbjct: 24 PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|212704407|ref|ZP_03312535.1| hypothetical protein DESPIG_02462 [Desulfovibrio piger ATCC 29098] gi|212672128|gb|EEB32611.1| hypothetical protein DESPIG_02462 [Desulfovibrio piger ATCC 29098] Length = 234 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 7/178 (3%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 +E+ ++++ + F + +E L + V +LL Sbjct: 54 SMEEQRGRLLELTPLPVRRRPFGSVADGIREASCCCAVDLEGLEEPALLVLDRAFVFSLL 113 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 E GA + R L+ +E LA++ + A + P + + Sbjct: 114 EEFFGAGG--FERPGRRPLTALETMLARKFADRFLAAFDLAGKP-SSWHPRCG--HSLSL 168 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP--QETLLKTTLISLSSQNKSENQS 224 + + V + + + L +P T L K Sbjct: 169 PRLAVLVPDEQPVWHLAFRSLLGGRPGALHLCLPEDFSTHLAVRSALPGPGRKKNIPD 226 >gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa] gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa] Length = 284 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + R+ + +KD++ L G V+ + N K + E+ V Sbjct: 206 LLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEVVMVND 265 Query: 295 NYTIRITDRINFDQKS 310 Y +R+TD ++ ++ Sbjct: 266 KYGVRLTDIVSPIERI 281 >gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter hydrocarbonoclasticus] Length = 166 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG I E+ V + Sbjct: 86 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 145 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 146 KFGIRLTDVISPGERI 161 >gi|239997092|ref|ZP_04717616.1| flagellar motor switch protein [Alteromonas macleodii ATCC 27126] Length = 135 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 1/106 (0%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + L +++ + V I + + ++++++ L G V+ Sbjct: 29 EDVQVAELDELTDDAPITQEEKKKL-DTILDIPVTISMEVGRSQISIRNLLQLNQGSVVE 87 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 88 LDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 133 >gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107] gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107] Length = 133 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + T+++++ L G VI + NG I E+ V + Sbjct: 54 ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 113 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 114 KFGIRMTDVISPAERIKK 131 >gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC3088] gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC3088] Length = 102 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + VNI + K +KD++ LK G V+ L N + E+ V Sbjct: 22 EVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNNTVVAQGEVVLV 81 Query: 293 GKNYTIRITDRINFDQKS 310 + Y +R+T+ I + + Sbjct: 82 NERYGVRLTNVIPSEDRI 99 >gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum GMI1000] gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia solanacearum GMI1000] Length = 156 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 74 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 133 Query: 293 GKNYTIRITDRINFDQKSLK 312 + + IR+TD I ++ K Sbjct: 134 NEKFGIRLTDIITPSERIRK 153 >gi|218461631|ref|ZP_03501722.1| flagellar C-ring motor switch protein [Rhizobium etli Kim 5] Length = 98 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 49/87 (56%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G + Sbjct: 12 AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIG 98 H+I N A+L +WS N + Sbjct: 72 HLIDDLSANVTLVDATLRNWSQNVTLA 98 >gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073] gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073] Length = 124 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 31/77 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ + + + + + T+K+++ LK G VI L N + E+ + Sbjct: 45 KRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGEVVVI 104 Query: 293 GKNYTIRITDRINFDQK 309 + +RI +++ Sbjct: 105 NDAFGVRINSLAAVEEE 121 >gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium yellowstonense SS-5] gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium yellowstonense SS-5] Length = 173 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I I K +++++ L VI L NG + EL +V Sbjct: 89 LLDIPITITVEIGSKSMPIEEILKLAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQVDD 148 Query: 295 NYTIRITDRINFDQKS 310 N+ I+IT+ + +++ Sbjct: 149 NFAIKITEILTKEERV 164 >gi|74317626|ref|YP_315366.1| flagellar motor switch/type III secretory pathway protein FliN [Thiobacillus denitrificans ATCC 25259] gi|74057121|gb|AAZ97561.1| flagellar motor switch/type III secretory pathway protein FliN [Thiobacillus denitrificans ATCC 25259] Length = 132 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 52 ILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 111 Query: 295 NYTIRITDRINFDQKSLK 312 + +R+TD I ++ K Sbjct: 112 KFGVRLTDIITPAERIRK 129 >gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC1989] gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC1989] Length = 150 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 3/97 (3%) Query: 219 KSENQSEDLIDPFA---RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + + + V I + T+++++ L G VI Sbjct: 52 EEFDNDPTAGKAISPELDLILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPL 111 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + + IR+TD I+ ++ K Sbjct: 112 NVLVNGTLIAHGEVVVVNEKFGIRMTDVISPAERIKK 148 >gi|42524696|ref|NP_970076.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus HD100] gi|39576906|emb|CAE78135.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus HD100] Length = 122 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K + +++ L G VI + N K I E V + Sbjct: 43 ILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAVVVNE 102 Query: 295 NYTIRITDRINFDQKS 310 + +R+TD I+ ++ Sbjct: 103 KFGVRLTDIISPAERV 118 >gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 250 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 40/107 (37%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P+ + + + + + Y + + + I K + DV+ L Sbjct: 137 PKSAPAEEAKAAPEGPITQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSP 196 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G VI + A + NG+ I E+ V + Y IRIT+ ++ Sbjct: 197 GSVIELDRSAGSAADVMVNGRLIARGEIVVVDEEYGIRITEIVSLAD 243 >gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC 19865] gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC 19865] Length = 112 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 34/91 (37%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + D + V + + + +++++ L G V+ + Sbjct: 18 QPERDLNATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NG I E+ + + IR+TD ++ ++ Sbjct: 78 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108 >gi|119469994|ref|ZP_01612799.1| flagellar motor switch protein [Alteromonadales bacterium TW-7] gi|119446704|gb|EAW27977.1| flagellar motor switch protein [Alteromonadales bacterium TW-7] Length = 132 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 ++ + + + V I + K +++++ L G V+ Sbjct: 32 LDELSDEKSEITGEEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAG 90 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 91 EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130 >gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp] gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] Length = 155 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + T+++++ L G VI + NG I E+ V + Sbjct: 76 ILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 136 KFGIRLTDVISPSERIKK 153 >gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans BC] gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans BC] Length = 151 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 70 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 129 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 130 KFGIRLTDVVTPSERL 145 >gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 377 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + +S + + E + + I + + +++++ G +I Sbjct: 274 ERVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGSIIE 333 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK I E+ + +++ +RITD +N + Sbjct: 334 LDKLAGEPVDILVNGKVIAKGEVVVIDESFGVRITDIVNPSNRL 377 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 65/206 (31%), Gaps = 7/206 (3%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFS 84 + + +G + ++ V I+ K+ + F Sbjct: 25 AISDQDKDVLGEIGNISMGTAATTLSILLNQKVSITTPIVSVLKWDELPKEFPVPYVAIK 84 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQI 142 + V + + ++G S E +L LS +++ + + Sbjct: 85 VVYKEGLDGVNLLVLKKEDVEIIADLMMGGSGSIEFSEELSELQLSAIQEA-MNQMVGSA 143 Query: 143 SAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVL 199 S L+ ++ + SP + + + S + + + MTI + + S + Sbjct: 144 STSLSSMLNLKIDISPPEAFVIDFAQNAEEMIPELKSADEIVKVAFRMTIGDLIDSQIMQ 203 Query: 200 IIPQETLLKTTLISLSSQNKSENQSE 225 +IP + + L+S + + E Sbjct: 204 LIPVDFAKQLVNAMLNSTLSTSSVQE 229 >gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC2047] Length = 132 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + T+++++ L G VI + NG I E+ V + Sbjct: 53 ILDIPVTVSMEVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGEVVVVNE 112 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD ++ ++ K Sbjct: 113 KFGIRLTDVVSPSERIQK 130 >gi|157961197|ref|YP_001501231.1| flagellar motor switch protein [Shewanella pealeana ATCC 700345] gi|157846197|gb|ABV86696.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] Length = 126 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 40/113 (35%) Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + + L N + + V I + +++++ L Sbjct: 12 AMAEQAIEEAKAVELDEFNSDGAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQL 71 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 72 NQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 124 >gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399] gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399] Length = 395 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 36/75 (48%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + ++ + K ++KD++ L G ++ + NGK + E+ + + Sbjct: 316 ILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 375 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ ++ ++ Sbjct: 376 NFGVRITEIVSPLER 390 >gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137 str. F0430] gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137 str. F0430] Length = 399 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 36/75 (48%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + ++ + K ++KD++ L G ++ + NGK + E+ + + Sbjct: 320 ILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 379 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ ++ ++ Sbjct: 380 NFGVRITEIVSPLER 394 >gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp. avenae ATCC 19860] Length = 148 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 67 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 126 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 127 KFGIRLTDVVTPSERL 142 >gi|229591842|ref|YP_002873961.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25] gi|229363708|emb|CAY51093.1| probable flagellar motor switch protein [Pseudomonas fluorescens SBW25] Length = 155 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 76 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 136 KFGIRLTDVISPSERIKK 153 >gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC 51333] gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC 51333] Length = 250 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 1/102 (0%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + +S E + Y + + + I K + DV+ L G VI Sbjct: 143 EEAKTAPEGPITQSTATPEQRAESMK-LLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 201 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + A + NG+ I E+ V + Y IRIT+ ++ Sbjct: 202 LDRSAGSAADVMVNGRLIARGEIVVVDEEYGIRITEIVSLAD 243 >gi|253998476|ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4] gi|313200551|ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688] gi|253985155|gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4] gi|312439867|gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688] Length = 145 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 65 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 124 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 125 KFGIRLTDIITPAERIRK 142 >gi|300693351|ref|YP_003749324.1| flagellar motor switching and energizing component. flin/mopa/spao family [Ralstonia solanacearum PSI07] gi|299075388|emb|CBJ34683.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum PSI07] Length = 169 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 1/95 (1%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + S+ S + + V + + K +K+++ L G V+ + Sbjct: 73 DDSKKPSPTQRNDI-DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDV 131 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 NG I E+ V + + IR+TD I ++ K Sbjct: 132 LVNGYLIAQGEVVVVNEKFGIRLTDIITPSERIRK 166 >gi|104782810|ref|YP_609308.1| flagellar motor switch protein [Pseudomonas entomophila L48] gi|95111797|emb|CAK16521.1| flagellar motor switch protein FliN [Pseudomonas entomophila L48] Length = 154 Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 1/147 (0%) Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSE 225 + L++E+ + +L L + N++ Sbjct: 6 EISSPEEQALADEWAAALEETGDAGQADIDALLGGDAGHAGGDRLPMEEFASSPKLNENV 65 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 L P + V+I + + +++++ L G VI + NG I Sbjct: 66 SLEGPNLDVILDIPVSISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 125 Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312 E+ V + + IR+TD I+ ++ K Sbjct: 126 HGEVVVVNEKFGIRLTDVISPSERIKK 152 >gi|70729041|ref|YP_258775.1| flagellar motor switch protein [Pseudomonas fluorescens Pf-5] gi|68343340|gb|AAY90946.1| flagellar motor switch protein FliN [Pseudomonas fluorescens Pf-5] Length = 153 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + +++++ L G VI + NG I E+ V + Sbjct: 74 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 133 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 134 KFGIRLTDVISPSERIKK 151 >gi|119775424|ref|YP_928164.1| flagellar motor switch protein [Shewanella amazonensis SB2B] gi|119767924|gb|ABM00495.1| flagellar motor switch protein FliN [Shewanella amazonensis SB2B] Length = 124 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 1/96 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +++++ S + + V I + ++++++ L G V+ Sbjct: 28 KDETKPLSSEEAAKL-DAILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLD 86 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 87 VMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122 >gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1] gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2] gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44] gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1] gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2] gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44] Length = 144 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 63 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 122 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 123 KFGIRLTDVVTPSERL 138 >gi|330826723|ref|YP_004390026.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans K601] gi|329312095|gb|AEB86510.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans K601] Length = 151 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 70 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 129 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 130 KFGIRLTDVVTPSERL 145 >gi|27365288|ref|NP_760816.1| flagellar motor switch protein [Vibrio vulnificus CMCP6] gi|37680657|ref|NP_935266.1| flagellar motor switch protein [Vibrio vulnificus YJ016] gi|320155672|ref|YP_004188051.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O] gi|27361435|gb|AAO10343.1| Flagellar motor switch protein fliN [Vibrio vulnificus CMCP6] gi|37199406|dbj|BAC95237.1| polar flagellar switch protein FliN [Vibrio vulnificus YJ016] gi|319930984|gb|ADV85848.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O] Length = 136 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P+ + + L + + V I + + ++++++ L Sbjct: 24 PEIDVDEVLAAPLEELKDTSAPITADERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|91785620|ref|YP_560826.1| flagellar motor switch protein FliN [Burkholderia xenovorans LB400] gi|91689574|gb|ABE32774.1| Flagellar motor switch protein FliN [Burkholderia xenovorans LB400] Length = 154 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 72 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 132 NDKFGIRLTDIITPSERIRK 151 >gi|327481258|gb|AEA84568.1| flagellar motor switch protein [Pseudomonas stutzeri DSM 4166] Length = 160 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + + ++++++ L G V+ + NG I E+ V + Sbjct: 81 ILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVVVVNE 140 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 141 KFGIRLTDVISPTERIKK 158 >gi|90406811|ref|ZP_01215003.1| flagellar motor switch protein [Psychromonas sp. CNPT3] gi|90312048|gb|EAS40141.1| flagellar motor switch protein [Psychromonas sp. CNPT3] Length = 129 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V I + + +++++ L G V+ + NG I E+ V Sbjct: 48 DSIMDIPVTISMEVGRSRINIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVV 107 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I+ +++ K Sbjct: 108 NDKFGIRLTDVISQNERIRK 127 >gi|167623387|ref|YP_001673681.1| flagellar motor switch protein [Shewanella halifaxensis HAW-EB4] gi|167353409|gb|ABZ76022.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] Length = 125 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 N+S SED + + V I + +++++ L G V+ Sbjct: 26 DEFSNESAPLSEDEVSKL-DAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRIAGE 84 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 85 PLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 123 >gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4] Length = 392 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 34/97 (35%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + Q + + + + + + ++K+++ G +I Sbjct: 296 VNVQPAQFQAFTGAVPGNFQPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELN 355 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + NGK + E+ + ++Y IRIT+ I Sbjct: 356 RIAGEPIDVLVNGKFVAKGEVVVIEESYGIRITEIIK 392 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 67/211 (31%), Gaps = 8/211 (3%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASL 88 + + + ++ V+IS +S I ++++ VF A Sbjct: 31 QEKDAIGEISNISMGTAATTLFSLVNRKVEISTPVVAFANWSDICDAYEKPCVFIRIAYT 90 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + V + + ++G + + + + + L+ Sbjct: 91 VGLDGSNILVLKEHDVKVITDLMMGGDGTNTDGELGELHLSAISEAMNQMMGSAATSLSS 150 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV----TTINMNMTIEN-VASSFVLIIPQ 203 ++ + SP D D+ + +EF+ I+ + I + V S + + P Sbjct: 151 MLNKVIDISPPSADLIDLQ--QTIDESQIDEFLAGEFVKISFRLEIGDLVDSEIMQLYPV 208 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 + S+ + N + + + + Sbjct: 209 SFAKEMCANVTSNMEEDSNSTAGMSEKENTQ 239 >gi|309779461|ref|ZP_07674222.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA] gi|308921702|gb|EFP67338.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA] Length = 151 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 46/144 (31%) Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228 N +++ + M + A+ P S + + + Sbjct: 5 PTMNPEANADDIDVEMTMEEAMALEAAQRAAANPPAAAPAAAESSPVFKPLTADGLGGAQ 64 Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 + V + + K +K+++ L G V+ + NG I E Sbjct: 65 RNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGE 124 Query: 289 LGRVGKNYTIRITDRINFDQKSLK 312 + V + + IR+TD I ++ K Sbjct: 125 VVVVNEKFGIRLTDIITPSERIRK 148 >gi|260776476|ref|ZP_05885371.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] gi|260607699|gb|EEX33964.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] Length = 136 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 41/111 (36%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P+ + + L + + + + V I + + ++++++ L Sbjct: 24 PEVDVDEVMAAQLDELQDTGSPISEDERRKLDTILDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis L1-82] gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis L1-82] gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1] Length = 392 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 34/97 (35%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + Q + + + + + + ++K+++ G +I Sbjct: 296 VNVQPAQFQAFTGAVPGNFQPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELN 355 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + NGK + E+ + ++Y IRIT+ I Sbjct: 356 RIAGEPIDVLVNGKFVAKGEVVVIEESYGIRITEIIK 392 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 66/211 (31%), Gaps = 8/211 (3%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASL 88 + + + ++ V+IS +S I ++++ VF A Sbjct: 31 QEKDAIGEISNISMGTAATTLFSLVNRKVEISTPVVAFANWSDICDAYEKPCVFIRIAYT 90 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + V + + ++G + + + + + L+ Sbjct: 91 VGLDGSNILVLKEHDVKVITDLMMGGDGTNTDGELGELHLSAISEAMNQMMGSAATSLSS 150 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV----TTINMNMTIEN-VASSFVLIIPQ 203 + + SP D D+ + +EF+ I+ + I + V S + + P Sbjct: 151 MLDKVIDISPPSADLIDLQ--QTIDESQIDEFLAGEFVKISFRLEIGDLVDSEIMQLYPV 208 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 + S+ + N + + + + Sbjct: 209 SFAKEMCANVTSNMEEDSNSTAGMSEKENTQ 239 >gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp. YO3AOP1] gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp. YO3AOP1] Length = 194 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 1/103 (0%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 E S ++++ + + I + K ++++++ L VI Sbjct: 84 PLKESEKKESFTKEEFSPEILNKL-DILLDIPITITVEVGSKSMSIEEILKLAPSSVIDL 142 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L NG + EL +V N+ I+IT+ + +++ Sbjct: 143 DKYLNEPIDLKVNGVLVAKGELYQVDDNFAIKITEILTKEERV 185 >gi|296157440|ref|ZP_06840275.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1] gi|295892212|gb|EFG71995.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1] Length = 154 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 72 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 132 NDKFGIRLTDIITPSERIRK 151 >gi|254506934|ref|ZP_05119073.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus 16] gi|323491453|ref|ZP_08096637.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546] gi|323496547|ref|ZP_08101601.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326] gi|219550219|gb|EED27205.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus 16] gi|323314322|gb|EGA67402.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546] gi|323318391|gb|EGA71348.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326] Length = 136 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 41/111 (36%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P+ + + L + + D + V I + + ++++++ L Sbjct: 24 PEIDVDEVMSAQLDELEDTSSPISDDERRKLDTILDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|207728360|ref|YP_002256754.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2] gi|206591606|emb|CAQ57218.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2] Length = 154 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 72 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKS 310 + + IR+TD I ++ Sbjct: 132 NEKFGIRLTDIITPSERI 149 >gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC 43541] gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC 43541] Length = 393 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 36/75 (48%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + ++ + K ++KD++ L G ++ + NGK + E+ + + Sbjct: 314 ILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 373 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ ++ ++ Sbjct: 374 NFGVRITEIVSPLER 388 >gi|94987083|ref|YP_595016.1| flagellar motor switch/type III secretory pathway protein [Lawsonia intracellularis PHE/MN1-00] gi|94731332|emb|CAJ54695.1| Flagellar motor switch/type III secretory pathway protein [Lawsonia intracellularis PHE/MN1-00] Length = 164 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ + + + +++ L G V+ + NGK + E + + Sbjct: 85 ILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVARGEAVVINE 144 Query: 295 NYTIRITDRINFDQKS 310 + +R+TD I+ ++ Sbjct: 145 KFGVRLTDIISPIERV 160 >gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 250 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + Y + + + I K + DV+ L G VI + A + Sbjct: 155 QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMV 214 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 NG+ I E+ V + Y IRIT+ ++ Sbjct: 215 NGRLIARGEIVVVDEEYGIRITEIVSLAD 243 >gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC 43063] gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC 43063] Length = 250 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + Y + + + I K + DV+ L G VI + A + Sbjct: 155 QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMV 214 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 NG+ I E+ V + Y IRIT+ ++ Sbjct: 215 NGRLIARGEIVVVDEEYGIRITEIVSLAD 243 >gi|15642124|ref|NP_231756.1| flagellar motor switch protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727203|ref|ZP_01680370.1| flagellar motor switch protein FliN [Vibrio cholerae V52] gi|153213272|ref|ZP_01948684.1| flagellar motor switch protein FliN [Vibrio cholerae 1587] gi|153803022|ref|ZP_01957608.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3] gi|153818985|ref|ZP_01971652.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457] gi|153822883|ref|ZP_01975550.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|153828628|ref|ZP_01981295.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39] gi|227082250|ref|YP_002810801.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2] gi|254291361|ref|ZP_04962154.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226] gi|254849210|ref|ZP_05238560.1| flagellar motor switch protein FliN [Vibrio cholerae MO10] gi|297582023|ref|ZP_06943942.1| flagellar motor switch protein FliN [Vibrio cholerae RC385] gi|298497853|ref|ZP_07007660.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757] gi|9656675|gb|AAF95270.1| flagellar motor switch protein FliN [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630448|gb|EAX62841.1| flagellar motor switch protein FliN [Vibrio cholerae V52] gi|124116072|gb|EAY34892.1| flagellar motor switch protein FliN [Vibrio cholerae 1587] gi|124121420|gb|EAY40163.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3] gi|126510480|gb|EAZ73074.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457] gi|126519579|gb|EAZ76802.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|148875899|gb|EDL74034.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39] gi|150422691|gb|EDN14645.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226] gi|227010138|gb|ACP06350.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2] gi|254844915|gb|EET23329.1| flagellar motor switch protein FliN [Vibrio cholerae MO10] gi|297533718|gb|EFH72560.1| flagellar motor switch protein FliN [Vibrio cholerae RC385] gi|297542186|gb|EFH78236.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757] Length = 138 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + D + V I + K ++++++ L Sbjct: 26 PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 85 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 86 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 136 >gi|258621112|ref|ZP_05716146.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573] gi|261209861|ref|ZP_05924162.1| flagellar motor switch protein FliN [Vibrio sp. RC341] gi|262166226|ref|ZP_06033963.1| flagellar motor switch protein FliN [Vibrio mimicus VM223] gi|262170888|ref|ZP_06038566.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] gi|258586500|gb|EEW11215.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573] gi|260841047|gb|EEX67572.1| flagellar motor switch protein FliN [Vibrio sp. RC341] gi|261891964|gb|EEY37950.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] gi|262025942|gb|EEY44610.1| flagellar motor switch protein FliN [Vibrio mimicus VM223] Length = 136 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + D + V I + K ++++++ L Sbjct: 24 PDIDVDEILAAPLEELKNTAPPISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|83747641|ref|ZP_00944677.1| FliN [Ralstonia solanacearum UW551] gi|207739722|ref|YP_002258115.1| flagellar motor switch protein flin [Ralstonia solanacearum IPO1609] gi|83725693|gb|EAP72835.1| FliN [Ralstonia solanacearum UW551] gi|206593104|emb|CAQ60010.1| flagellar motor switch protein flin [Ralstonia solanacearum IPO1609] Length = 154 Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 72 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKSLK 312 + + IR+TD I ++ K Sbjct: 132 NEKFGIRLTDIITPSERIRK 151 >gi|299068764|emb|CBJ40004.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum CMR15] Length = 158 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 76 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 135 Query: 293 GKNYTIRITDRINFDQKSLK 312 + + IR+TD I ++ K Sbjct: 136 NEKFGIRLTDIITPSERIRK 155 >gi|307731350|ref|YP_003908574.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003] gi|307585885|gb|ADN59283.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003] Length = 155 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 73 DMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 132 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 133 NDKFGIRLTDIITPSERIRK 152 >gi|121586780|ref|ZP_01676562.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80] gi|153825567|ref|ZP_01978234.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2] gi|229507790|ref|ZP_04397295.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286] gi|229511973|ref|ZP_04401452.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|229513776|ref|ZP_04403238.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21] gi|229519109|ref|ZP_04408552.1| flagellar motor switch protein FliN [Vibrio cholerae RC9] gi|229522078|ref|ZP_04411495.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80] gi|229524127|ref|ZP_04413532.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis VL426] gi|229528863|ref|ZP_04418253.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)] gi|229607335|ref|YP_002877983.1| flagellar motor switch protein [Vibrio cholerae MJ-1236] gi|255745136|ref|ZP_05419085.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101] gi|262153474|ref|ZP_06028604.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1] gi|262191374|ref|ZP_06049564.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93] gi|121548947|gb|EAX58986.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80] gi|149740718|gb|EDM54817.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2] gi|229332637|gb|EEN98123.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)] gi|229337708|gb|EEO02725.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis VL426] gi|229341003|gb|EEO06008.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80] gi|229343798|gb|EEO08773.1| flagellar motor switch protein FliN [Vibrio cholerae RC9] gi|229348957|gb|EEO13914.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21] gi|229351938|gb|EEO16879.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|229355295|gb|EEO20216.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286] gi|229369990|gb|ACQ60413.1| flagellar motor switch protein FliN [Vibrio cholerae MJ-1236] gi|255736966|gb|EET92362.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101] gi|262030711|gb|EEY49345.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1] gi|262032749|gb|EEY51297.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93] gi|327484653|gb|AEA79060.1| Flagellar motor switch protein FliN [Vibrio cholerae LMA3894-4] Length = 136 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + D + V I + K ++++++ L Sbjct: 24 PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetohalobium arabaticum DSM 5501] gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetohalobium arabaticum DSM 5501] Length = 408 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 40/106 (37%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 ++ + ++ + + + + R+ K +KD++ L G VI Sbjct: 302 EESVDVQSVEFSQLGEGQTEQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELGNGSVIE 361 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L NGK I E+ + +N+ R+TD ++ ++ Sbjct: 362 LDKLAGESVDLLVNGKLIAKGEVVVIDENFGFRVTDIVSPMERITN 407 Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 61/203 (30%), Gaps = 4/203 (1%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90 + +G + +D V+I+ + F +I ++ V + Sbjct: 48 KDAIGEIGNISMGSAATALYSLLDETVEITAPEVELVTFQKLIQEYERPCVVVDVEYIEG 107 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + + ++G N + + + + S ++ + Sbjct: 108 LEGSNLLIIEQQDAAIISDLMMGGDGNNPDAELNELHLSAVSEAMNQMMGSASTSMSTIM 167 Query: 151 S-TTQESSPNLEDFYDIDYLK-KNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLL 207 SP + ++ + K+ + ++ V ++ ++TI V S + ++P + Sbjct: 168 QGDKVNISPPNAELLTLNTDEIKSRSFQPDDEVVKVSFDLTIGEVIDSEILQLMPLDFAK 227 Query: 208 KTTLISLSSQNKSENQSEDLIDP 230 + + Sbjct: 228 ELVAYLTDPDPSERAEEPQESGE 250 >gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22] gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22] Length = 288 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 94/287 (32%), Gaps = 20/287 (6%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 ++S L + K L ++ + + S + K + E + + SS Sbjct: 1 MASDLSNILKSELANTLEQLLSKKTKVD--SVEKFKNDTNLTQLIE--CNVKLDMKGLSS 56 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL-NQCIST 152 +LG E + + + ++ S ++ Q +S Sbjct: 57 RIHFYIPAVSATKFEYLMLGGMGELKETIDD-ETTDAVNEIVSNICGSFSTLVNAQGLSD 115 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN------------MTIENVASSFVLI 200 ++ ++ + + EF +++ + + + Sbjct: 116 VGSIKSEIKSTIKVENSVLSAKDDAYEFTISLDDEKYRLMVVFDKLLLPYFSAITGIYQE 175 Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 P+ ++ + +S ++ + + + + + Y + + + R+ K LKD++ Sbjct: 176 EPKVQVVPSAPVSNNTGSSNSSVTPTSKNL--ELLYNVKLKLSVRLGTKIVLLKDILRWD 233 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G++I + NG +I E V + ++I IN D Sbjct: 234 VGEIIELEQMVNEPLEILINGVKIGEGEAVIVEGKFGLKIKRIINED 280 >gi|332140590|ref|YP_004426328.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550612|gb|AEA97330.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 135 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 1/106 (0%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + L +++ + V I + + ++++++ L G V+ Sbjct: 29 EDVQVAELDELTDDAPITQEEKKKL-DTILDIPVTISMEVGRSQISIRNLLQLNQGSVVE 87 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 88 LDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 133 >gi|261252330|ref|ZP_05944903.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891] gi|260935721|gb|EEX91710.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891] Length = 136 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 40/111 (36%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + + + + V I + + ++++++ L Sbjct: 24 PSIDVDEVMNAQLDELEDTSSPISEDERRKLDTILDIPVTISMEVGRSQISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|170725981|ref|YP_001760007.1| flagellar motor switch protein [Shewanella woodyi ATCC 51908] gi|169811328|gb|ACA85912.1| flagellar motor switch protein FliN [Shewanella woodyi ATCC 51908] Length = 129 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V I + +++++ L G V+ + NG I E+ V Sbjct: 48 DAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVV 107 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 108 NDKFGIRLTDVISQTERIKK 127 >gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1] gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1] Length = 148 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 9/104 (8%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 S S++ + + + V + + K +K ++ L G V+ Sbjct: 48 EPVRPFSSSNEAPVNDINM---------VLDIPVQLSVELGRTKVPIKYILQLAQGSVVE 98 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ V + IR+TD + ++ Sbjct: 99 LDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERL 142 >gi|262404471|ref|ZP_06081026.1| flagellar motor switch protein FliN [Vibrio sp. RC586] gi|262349503|gb|EEY98641.1| flagellar motor switch protein FliN [Vibrio sp. RC586] Length = 136 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + L + D + V I + K ++++++ L Sbjct: 24 PDIDVDEILAAPLEELKNTAPAISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134 >gi|241763647|ref|ZP_04761697.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN] gi|241367122|gb|EER61488.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN] Length = 145 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 64 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 123 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 124 KFGIRLTDVVTPSERL 139 >gi|89072282|ref|ZP_01158861.1| putative flagellar motor switch protein [Photobacterium sp. SKA34] gi|89051814|gb|EAR57266.1| putative flagellar motor switch protein [Photobacterium sp. SKA34] Length = 257 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 91/287 (31%), Gaps = 44/287 (15%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDL--------DVDISYTSCQSGKFSHIIHSFKENFV 82 + K + L D ++ +S TS ++ Sbjct: 6 LGKPIHIIKDELANILSDSLLGLTDQIQKWVKTHELTMSVTSIDFQSPKQ-----GQHTA 60 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142 F+ A CS L+I L + + + + ++ ++ + +L +R Sbjct: 61 FTVAHNDG--GMMNFRCSAPLLIALADRFYHSPVNRLNSVKSQVITKSDLRLQERIGQLF 118 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202 SA + + + + LS++ I +++T E ++ I Sbjct: 119 SAQVAP-----------------EEMWQACDSSLSDDIGLVIQLSVTCEETIGDIIICID 161 Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + T + + +L F+++ V ++T + K+ L V+ LK G Sbjct: 162 SALIQTLTSVIG------LQPTSELNALFSQQLESTKVKLNTVLCEKQMPLDQVLQLKPG 215 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + +S + +++ + + IN + Sbjct: 216 DIFDIDLMQSS--TISIGQEYLFNGHVAEQNGQLVL----IINTSKD 256 >gi|312173312|emb|CBX81567.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC BAA-2158] Length = 93 Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 11 NLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 70 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IRITD I ++ + Sbjct: 71 SDKFGIRITDIITPSERMHR 90 >gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484] gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484] Length = 238 Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 L S + +Q Y + + + I + ++ V+ L G V+ Sbjct: 134 LRLRSPKVATPTTSQVPTPRANLRM-LYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELD 192 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + A + NG+ + E+ V + Y IR+T+ + + Sbjct: 193 RTAGSPADVLVNGRLVARGEVVVVDEVYGIRVTEIVAGND 232 >gi|82702482|ref|YP_412048.1| surface presentation of antigens (SPOA) protein [Nitrosospira multiformis ATCC 25196] gi|82410547|gb|ABB74656.1| Surface presentation of antigens (SPOA) protein [Nitrosospira multiformis ATCC 25196] Length = 151 Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + ++ K +K+++ L G V+ + NG I E+ V Sbjct: 69 DLVMDIPVQLTVQLGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 128 Query: 293 GKNYTIRITDRINFDQKSLK 312 + + IR+TD I ++ K Sbjct: 129 NEKFGIRLTDIITPSERIRK 148 >gi|113969633|ref|YP_733426.1| flagellar motor switch protein [Shewanella sp. MR-4] gi|114046863|ref|YP_737413.1| flagellar motor switch protein [Shewanella sp. MR-7] gi|113884317|gb|ABI38369.1| flagellar motor switch protein FliN [Shewanella sp. MR-4] gi|113888305|gb|ABI42356.1| flagellar motor switch protein FliN [Shewanella sp. MR-7] Length = 124 Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + S+ S+ + V I + ++++++ L G V+ Sbjct: 24 LDELVDDSQPISKAEAAKL-DTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAG 82 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 83 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122 >gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium HP15] Length = 163 Score = 75.4 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG I E+ V + Sbjct: 83 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 142 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 143 KFGIRLTDVISPGERI 158 >gi|295696125|ref|YP_003589363.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus tusciae DSM 2912] gi|295411727|gb|ADG06219.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus tusciae DSM 2912] Length = 395 Score = 75.4 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 34/78 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 +++ + + ++++V++ +G V+ + N K I E+ + Sbjct: 311 DLLLDVSLTVSVELGRTHQSVREVLSWSLGSVVELDRLAGEPVDIYVNQKLIAKGEVVVI 370 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +R+TD ++ + Sbjct: 371 DENFGVRVTDIVHPRDRM 388 >gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684] gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684] Length = 130 Score = 75.4 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + + V + I + T+ + + L+ G ++ L NG I E+ + Sbjct: 28 RLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEVVVID 87 Query: 294 KNYTIRITDRIN 305 + + +RITD + Sbjct: 88 EEFGLRITDVLG 99 >gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65] gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65] Length = 185 Score = 75.4 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + + +++++ L G VI + NG I E+ V Sbjct: 106 ILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVND 165 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 166 KFGIRLTDVISQAERIQK 183 >gi|332524238|ref|ZP_08400464.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2] gi|332107573|gb|EGJ08797.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2] Length = 144 Score = 75.4 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +K ++ L G V+ + NG I E+ V Sbjct: 63 ILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 122 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 123 KFGIRLTDIVTPSERM 138 >gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens 16/4] Length = 394 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 3/117 (2%) Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + +PQ T + S + +++ + Sbjct: 281 MAGQQMPPYMYMPQPT---INVQPAQFTPFGPGFSAQFAQENIDLILDVPLDVTVELGRT 337 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 T++D++ G +I + NGK + E+ + +++ +RIT+ I Sbjct: 338 NKTIQDILDFAPGTIIELNKIAGEPIDVLVNGKYVAKGEVVVIEESFGVRITEIIKE 394 >gi|302878291|ref|YP_003846855.1| flagellar motor switch protein FliN [Gallionella capsiferriformans ES-2] gi|302581080|gb|ADL55091.1| flagellar motor switch protein FliN [Gallionella capsiferriformans ES-2] Length = 148 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 66 DMILDIPVQLTVELGRTKMPIKNLLQLAQGSVVELSGMAGEPLDVMINGFLIAQGEVVVV 125 Query: 293 GKNYTIRITDRINFDQKS 310 IR+TD ++ Sbjct: 126 NDKLGIRLTDITTPSERL 143 >gi|127512305|ref|YP_001093502.1| flagellar motor switch protein [Shewanella loihica PV-4] gi|126637600|gb|ABO23243.1| flagellar motor switch protein FliN [Shewanella loihica PV-4] Length = 127 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 43/122 (35%) Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 E+ + + ++ L + + L S + + V I + Sbjct: 4 EDTGDDWAAAMAEQALEEAQAVELDELADSSKPLTEEEAAKLDTIMDIPVTISMEVGRSF 63 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +++++ L G V+ + NG I E+ V + IR+TD I+ ++ Sbjct: 64 INIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI 123 Query: 311 LK 312 K Sbjct: 124 KK 125 >gi|120598258|ref|YP_962832.1| flagellar motor switch protein [Shewanella sp. W3-18-1] gi|146293664|ref|YP_001184088.1| flagellar motor switch protein [Shewanella putrefaciens CN-32] gi|120558351|gb|ABM24278.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] gi|145565354|gb|ABP76289.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] gi|319427063|gb|ADV55137.1| flagellar motor switch protein FliN [Shewanella putrefaciens 200] Length = 127 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 1/110 (0%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 Q + + S+ S+ + V I + ++++++ L G Sbjct: 17 QALEEANAVALDELVDDSQPISKADAAKL-DTILDIPVTISMEVGRSFISIRNLLQLNQG 75 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 76 SVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125 >gi|187926921|ref|YP_001893266.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J] gi|241665250|ref|YP_002983609.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D] gi|187728675|gb|ACD29839.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J] gi|240867277|gb|ACS64937.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D] Length = 150 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +K+++ L G V+ + NG I E+ V Sbjct: 68 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 127 Query: 293 GKNYTIRITDRINFDQKSLK 312 + + IR+TD I ++ K Sbjct: 128 NEKFGIRLTDIITPSERIRK 147 >gi|109899344|ref|YP_662599.1| flagellar motor switch protein [Pseudoalteromonas atlantica T6c] gi|109701625|gb|ABG41545.1| flagellar motor switch protein FliN [Pseudoalteromonas atlantica T6c] Length = 131 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 1/95 (1%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + S + V I + ++++++ L G V+ + Sbjct: 36 EEDKEISPAEKRKL-DTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDV 94 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 NG I E+ V + IR+TD I+ ++ K Sbjct: 95 LVNGTLIAHGEVVVVNDKFGIRLTDVISQLERIKK 129 >gi|85060032|ref|YP_455734.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] gi|84780552|dbj|BAE75329.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] Length = 132 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 51 DLIMDIPVKMTVELGRTKMTIKELLRLAQGSVVALDGLAGEPLDILINGYLIAQGEV-VV 109 Query: 293 GKNYTIRITDRINFDQKS 310 Y +RIT I ++ Sbjct: 110 ADKYGVRITSIITPSERM 127 >gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM 2876] gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM 2876] Length = 426 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 8/73 (10%), Positives = 30/73 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + ++K+++ G ++ + NGK + E+ + Sbjct: 354 DLIMDVPLEVTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEVVVI 413 Query: 293 GKNYTIRITDRIN 305 +++ ++IT+ + Sbjct: 414 EESFGVKITEIVK 426 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 18/190 (9%), Positives = 57/190 (30%), Gaps = 13/190 (6%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82 G+ + + + ++ V+I+ + + S+ + V Sbjct: 34 GEETLTDEQKDAIGEISNISMGTAATTLSTLLNQTVNITTPKVTYMNWQELADSYDKPCV 93 Query: 83 -FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 + S N + V + + ++G + + + + + Sbjct: 94 FLQISYTSGLDGNNVLVLKERDVKIITDLMMGGPGNVSDEPIGELHLSAIGEAMNQMMGS 153 Query: 142 ISAVLNQCISTTQESSPNLEDFYDID------YLKKNTNRLSNEFVTTINMNMTIEN-VA 194 + ++ + + SP + + D++ + R ++ MTI + Sbjct: 154 AATSMSSMLGKKIDISPPIANLVDLNDNNKKDIPEFLQKRF-----VKVSFRMTIGTLID 208 Query: 195 SSFVLIIPQE 204 S + + P + Sbjct: 209 SEIMQLYPFD 218 >gi|218288307|ref|ZP_03492606.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius LAA1] gi|218241666|gb|EED08839.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius LAA1] Length = 381 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + + + Y + +N+ + K +++++ L G ++ Sbjct: 278 RPAFPDFDEGATPRDARPVANLS-LLYDVPLNVTVELGRAKKLIREILELAPGSILELDK 336 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K+I E+ + +N+ +R+TD + D++ Sbjct: 337 LAGEPVDIYVNQKKIAIGEVVVIDENFGVRVTDIVQADKRI 377 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 19/219 (8%), Positives = 55/219 (25%), Gaps = 5/219 (2%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + +G + + VDI+ S + F +V Q Sbjct: 36 ADEIDVLGEIGNICFGSAATSLSSLLGRRVDITTPVVSIIPRSEVESRFPTPYVLVQVDF 95 Query: 89 -SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + ++G + + + + + ++ Sbjct: 96 TEGLQGTNALAIEIEDARRIADLMMGREPSESTGELGELELSAVGEAMNQMMGSAATAMS 155 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL 206 Q SP + E + + + + + S + ++P Sbjct: 156 QLFGRYINISPPSVRVVTFTPDEAQAAFGLAEELVNVEFRLHVHELIDSHIMQLMPIPFA 215 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + S Q ++ + + + R+ V+ Sbjct: 216 ---RELVRSMQVHTDAIAPEPREGDERRDGDAPVSAGAE 251 >gi|285018172|ref|YP_003375883.1| flagellar motor switch/type III secretory pathway protein flin [Xanthomonas albilineans GPE PC73] gi|283473390|emb|CBA15895.1| probable flagellar motor switch/type III secretory pathway protein flin [Xanthomonas albilineans] Length = 112 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + +++++ L G V+ + NG I E+ + Sbjct: 33 ILDVPITLSLEVGRSRIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVTIND 92 Query: 295 NYTIRITDRINFDQKS 310 + +R+TD ++ ++ Sbjct: 93 RFGVRLTDVVSPSERI 108 >gi|332994113|gb|AEF04168.1| flagellar motor switch protein [Alteromonas sp. SN2] Length = 133 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 1/95 (1%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +++ + V I + + ++++++ L G V+ + Sbjct: 38 TDDTPITQEEKKKL-DTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDV 96 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 NG I E+ V + IR+TD I+ ++ K Sbjct: 97 LVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 131 >gi|24374732|ref|NP_718775.1| flagellar motor switch protein [Shewanella oneidensis MR-1] gi|24349392|gb|AAN56219.1|AE015759_11 flagellar motor switch protein FliN [Shewanella oneidensis MR-1] Length = 124 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + S+ S+ + V I + ++++++ L G V+ Sbjct: 24 LDELVDDSQPISKAEAAKL-DTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAG 82 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 83 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122 >gi|117919798|ref|YP_868990.1| flagellar motor switch protein [Shewanella sp. ANA-3] gi|117612130|gb|ABK47584.1| flagellar motor switch protein FliN [Shewanella sp. ANA-3] Length = 124 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 ++S+ S+ + V I + ++++++ L G V+ Sbjct: 24 LDELVDESQPISKAEAAKL-DTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAG 82 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 83 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122 >gi|255021380|ref|ZP_05293428.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] gi|254969243|gb|EET26757.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] Length = 150 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + VN+ + K +++++ L G V+ + NG I E+ V Sbjct: 69 DMILDIPVNLSVELGRTKIQIRNLLQLAQGSVVELERLAGEPMDVLVNGYLIAQGEVVLV 128 Query: 293 GKNYTIRITDRINFDQK 309 + IR+TD I+ ++ Sbjct: 129 NDKFGIRLTDIISPAER 145 >gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297] gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297] Length = 165 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG+ I E+ V + Sbjct: 86 ILDIPVTISMEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVVMVNE 145 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD ++ ++ Sbjct: 146 KFGIRLTDVVSQQERV 161 >gi|224370776|ref|YP_002604940.1| FliN [Desulfobacterium autotrophicum HRM2] gi|223693493|gb|ACN16776.1| FliN [Desulfobacterium autotrophicum HRM2] Length = 113 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 33/99 (33%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S + + + +++ + + + D++ L G ++ Sbjct: 10 SSQHGSDDEFDHEGQQTGRELDFILDIPLDLSVELGRARMLVNDLLQLGQGSIVELNKLA 69 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K I E+ V + + +R+TD I + Sbjct: 70 GEPLEVYINRKLIARGEVVVVNEKFGVRLTDIITPMDRV 108 >gi|294678113|ref|YP_003578728.1| surface presentation of antigens protein family [Rhodobacter capsulatus SB 1003] gi|294476933|gb|ADE86321.1| surface presentation of antigens protein family [Rhodobacter capsulatus SB 1003] Length = 418 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 26/282 (9%), Positives = 83/282 (29%), Gaps = 15/282 (5%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + K+ ++ L + S + + + + + S I Sbjct: 30 RAIVQAVSKVAQDMFQLPAQVLQVSEGRRTLADLPEAIDPFSLIAIIEGPE-ESMGIIAL 88 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE--SS 157 + L+E + P + ++ + + A++ + + T+ + Sbjct: 89 PPETLSVLIEVQTTGNLGKGPPPPRKPT-RIDASMVVDFLDTTLAMIEESLVETEAVIWA 147 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE---NVASSFVLIIPQE----TLLKTT 210 +D + L + + + + +P +L + Sbjct: 148 GGFRYASYLDDPRPLGLLLEDMGYRLWQLEIGFGVGFERKGKLIWAVPVNGRGHSLRRLP 207 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 ++ + ++ + + +D ++ L V+ L+ G IP Sbjct: 208 GLADEGPISPDREAAEWAHRLENSVMGASAQLDAVLHRVTLPLAAVMRLRAGMDIPIPSD 267 Query: 271 EKTCAILS-ANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + +++ + LG+ +R+ I +++ L Sbjct: 268 ALENLTVEGVGRRKLSAARLGQHRGLRAVRL---IEHEEEEL 306 >gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC 43531] gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC 43531] Length = 396 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 36/75 (48%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + ++ + K ++K+++ L G ++ + NGK + E+ + + Sbjct: 317 ILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 376 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ ++ ++ Sbjct: 377 NFGVRITEIVSPLER 391 >gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ZM4] gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ZM4] gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 103 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 1/98 (1%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 S+ S++ + + V + + +L +++ L G V+ + Sbjct: 4 ESTAKGSKSAKSNRTKDL-GLLSDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANE 62 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + NGK I E+ V + +RI D ++ + S+ Sbjct: 63 LLDVVVNGKLIAKGEVVTVNGRFGVRIVDVVSNENNSV 100 >gi|114562368|ref|YP_749881.1| flagellar motor switch protein [Shewanella frigidimarina NCIMB 400] gi|114333661|gb|ABI71043.1| flagellar motor switch protein FliN [Shewanella frigidimarina NCIMB 400] Length = 127 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 Q + + S +++ + V I + ++++++ L G Sbjct: 17 QALEEAEHVELDELVDDSRPITKEEAAKL-DGILDIPVTISMEVGRSFISIRNLLQLNQG 75 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 76 SVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125 >gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC 35243] gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC 35239] gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC 35243] gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC 35239] Length = 248 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 42/103 (40%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + + + + Y + + + I K + DV+ L G VI Sbjct: 146 ESATTPPASQASATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRS 205 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + A + NG+ I E+ V + Y IRIT+ ++ ++ + Sbjct: 206 AGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAEQQNRQ 248 >gi|294140211|ref|YP_003556189.1| flagellar motor switch protein FliN [Shewanella violacea DSS12] gi|293326680|dbj|BAJ01411.1| flagellar motor switch protein FliN [Shewanella violacea DSS12] Length = 127 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V I + ++++++ L G V+ + NG I E+ V Sbjct: 46 DTIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVV 105 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 106 NDKFGIRLTDVISQTERIKK 125 >gi|255022968|ref|ZP_05294954.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J1-208] Length = 115 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 40/103 (38%) Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + +P ++ + + + ++ + ++ +Q+ R+ KTT K++ Sbjct: 1 MRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKEL 60 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 L++G V+ + K + C +G+ G ++ Sbjct: 61 NKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 103 >gi|302343740|ref|YP_003808269.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM 2075] gi|301640353|gb|ADK85675.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM 2075] Length = 117 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 30/76 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + D++ L G V+ + N K I E+ V + Sbjct: 38 ILDIPLEVTVELGRTSMLINDLLQLGQGSVVELNKLAGEPLEILVNRKLIARGEVVVVNE 97 Query: 295 NYTIRITDRINFDQKS 310 + +R+TD ++ ++ Sbjct: 98 KFGVRLTDIVSPIERV 113 >gi|157376190|ref|YP_001474790.1| flagellar motor switch protein [Shewanella sediminis HAW-EB3] gi|157318564|gb|ABV37662.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] Length = 127 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 44/122 (36%) Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 E+ + + ++ + + + L + + + V I + Sbjct: 4 EDTGDDWAEAMAEQAIEEAQAVELDELTDTAAALSEEDVAKLDSIMDIPVTISMEVGRSF 63 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 ++++++ L G V+ + NG I E+ V + IR+TD I+ ++ Sbjct: 64 ISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI 123 Query: 311 LK 312 K Sbjct: 124 KK 125 >gi|298530626|ref|ZP_07018028.1| flagellar motor switch protein FliN [Desulfonatronospira thiodismutans ASO3-1] gi|298510000|gb|EFI33904.1| flagellar motor switch protein FliN [Desulfonatronospira thiodismutans ASO3-1] Length = 187 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + ++ + + +++ L G VI + NGK + E + + Sbjct: 108 ILDIPLTVTAQLGGTQLLINELLQLGQGSVIELNKLAGEPMEVLVNGKLVARGEAVVINE 167 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 168 KFGIRLTDIISPVERI 183 >gi|126175120|ref|YP_001051269.1| flagellar motor switch protein [Shewanella baltica OS155] gi|153001444|ref|YP_001367125.1| flagellar motor switch protein [Shewanella baltica OS185] gi|160876169|ref|YP_001555485.1| flagellar motor switch protein [Shewanella baltica OS195] gi|217972624|ref|YP_002357375.1| flagellar motor switch protein [Shewanella baltica OS223] gi|304409951|ref|ZP_07391570.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|307302336|ref|ZP_07582094.1| flagellar motor switch protein FliN [Shewanella baltica BA175] gi|125998325|gb|ABN62400.1| flagellar motor switch protein FliN [Shewanella baltica OS155] gi|151366062|gb|ABS09062.1| flagellar motor switch protein FliN [Shewanella baltica OS185] gi|160861691|gb|ABX50225.1| flagellar motor switch protein FliN [Shewanella baltica OS195] gi|217497759|gb|ACK45952.1| flagellar motor switch protein FliN [Shewanella baltica OS223] gi|304351360|gb|EFM15759.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|306914374|gb|EFN44795.1| flagellar motor switch protein FliN [Shewanella baltica BA175] gi|315268365|gb|ADT95218.1| flagellar motor switch protein FliN [Shewanella baltica OS678] Length = 126 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + S ++ + V I + ++++++ L G V+ Sbjct: 26 LDELVDDSRPITKAEAAKL-DTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAG 84 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 85 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 124 >gi|91792692|ref|YP_562343.1| flagellar motor switch protein [Shewanella denitrificans OS217] gi|91714694|gb|ABE54620.1| Flagellar motor switch FliN [Shewanella denitrificans OS217] Length = 127 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 Q + + S +++ + V I + ++++++ L G Sbjct: 17 QAIEEAQQIELDELVDDSRPITKEEAAKL-DSILDIPVTISMEVGRSFISIRNLLQLNQG 75 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 76 SVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125 >gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 368 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +N+ I + LKDV+ G V+ + + NG+ I E+ + Sbjct: 289 IMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD 348 Query: 295 NYTIRITDRINF 306 N+ +RIT+ +N Sbjct: 349 NFGVRITEIVNT 360 >gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. SMY] gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName: Full=CheY-P phosphatase FliY; AltName: Full=Flagellar motor switch protein FliY gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis] gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. subtilis str. 168] Length = 378 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 64/194 (32%), Gaps = 2/194 (1%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91 +G + ++ VDI+ S S I +F E + Sbjct: 39 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVIPRSKISDAFPEPYVAIEVNYTEGF 98 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 S + + + + + ++G + + ++ + + + ++ S Sbjct: 99 SGSNLLVVEQSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 158 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210 + SP + D+ K +E + ++ N+ + + SS + + P Sbjct: 159 KKIDISPPRVELLDVTEEKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDLI 218 Query: 211 LISLSSQNKSENQS 224 ++S++ E ++ Sbjct: 219 SSLMNSESAEEEET 232 Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 35/78 (44%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++I + K ++K+++ L G +I + N + + E+ + Sbjct: 297 DMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVI 356 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +R+TD ++ ++ Sbjct: 357 EENFGVRVTDILSQAERI 374 >gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5] gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto BEST195] gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5] Length = 378 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 64/194 (32%), Gaps = 2/194 (1%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91 +G + ++ VDI+ S S I +F E + Sbjct: 39 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVIPRSKISDAFPEPYVAIEVNYTEGF 98 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 S + + + + + ++G + + ++ + + + ++ S Sbjct: 99 SGSNLLVVEQSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 158 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210 + SP + D+ K +E + ++ N+ + + SS + + P Sbjct: 159 KKIDISPPRVELLDVTEEKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDLI 218 Query: 211 LISLSSQNKSENQS 224 ++S++ E ++ Sbjct: 219 SSLMNSESAEEEET 232 Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 35/78 (44%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++I + K ++K+++ L G +I + N + + E+ + Sbjct: 297 DMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVI 356 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +R+TD ++ ++ Sbjct: 357 EENFGVRVTDILSQAERI 374 >gi|149184185|ref|ZP_01862503.1| hypothetical protein ED21_25743 [Erythrobacter sp. SD-21] gi|148831505|gb|EDL49938.1| hypothetical protein ED21_25743 [Erythrobacter sp. SD-21] Length = 298 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 32/286 (11%), Positives = 80/286 (27%), Gaps = 10/286 (3%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSF 77 L + ++ + + + E D + S + + Sbjct: 18 DELLSRAATPPELDIEFARFVSGFAENAQLQLAELCDDRGIATSVVATELLPVGDWYEQM 77 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 S SL S + ++ E +LG S E +L L + A + Sbjct: 78 GNARRHSYFSLGQESRGILVSVGIGELVAQFERILGGSGEVDERLG--ILPASAARFAHQ 135 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 ++ + + S +E S + D + TI ++ + + Sbjct: 136 FDDRVCEAMRRT-SDRREISASAIGDEAEDVAPFA--LGEKVWTATIAISSSKSDRPWQV 192 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 L Q + + + + + ++ +++ + + ++ + Sbjct: 193 RLAACQSMIAELVEKRAA--SPATGRTIGARGIGGSAIADVDLPLRAVLVDVPMSIARLA 250 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 +L+ G VI L I +G + + +T Sbjct: 251 SLEPGAVI--QVAVNRSVPLQIGQLTIAHGCVGELDDRVALELTHT 294 >gi|145298354|ref|YP_001141195.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp. salmonicida A449] gi|142851126|gb|ABO89447.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp. salmonicida A449] Length = 121 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 1/113 (0%) Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + L S + + V I + + ++++++ L Sbjct: 8 ALEEQVIAEAKPAPLEELTDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQL 66 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 67 NQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 119 >gi|325273550|ref|ZP_08139780.1| flagellar motor switch protein [Pseudomonas sp. TJI-51] gi|324101310|gb|EGB98926.1| flagellar motor switch protein [Pseudomonas sp. TJI-51] Length = 82 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + VNI + + +++++ L G VI + NG I E+ V + Sbjct: 3 ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 62 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 63 KFGIRLTDVISPSERIKK 80 >gi|160896095|ref|YP_001561677.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1] gi|160361679|gb|ABX33292.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1] Length = 143 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 62 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 121 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 122 KFGIRLTDVVTPSERL 137 >gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ethanoligenens harbinense YUAN-3] gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ethanoligenens harbinense YUAN-3] Length = 374 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 34/75 (45%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ +++ + + +++++ +G +I + + NG+ I E+ + Sbjct: 297 ELIQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPVDIIVNGQLIAQGEVVVI 356 Query: 293 GKNYTIRITDRINFD 307 +N+ +RIT+ I Sbjct: 357 DENFGVRITEIIGKQ 371 >gi|88858100|ref|ZP_01132742.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] gi|88819717|gb|EAR29530.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] Length = 131 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 N+ +++ + V I + K ++++++ L G V+ Sbjct: 31 LEELSNQPAEITQEEKRKL-DTILDIPVTISMEVGRSKISIRNLLQLNQGSVVELDRVAG 89 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 90 EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 129 >gi|49184600|ref|YP_027852.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|65319043|ref|ZP_00392002.1| COG1868: Flagellar motor switch protein [Bacillus anthracis str. A2012] gi|227815465|ref|YP_002815474.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. CDC 684] gi|254683264|ref|ZP_05147125.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. CNEVA-9066] gi|254734617|ref|ZP_05192329.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. Western North America USA6153] gi|254741026|ref|ZP_05198714.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. Kruger B] gi|254755269|ref|ZP_05207303.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. Vollum] gi|254759805|ref|ZP_05211829.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. Australia 94] gi|49178527|gb|AAT53903.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|227004068|gb|ACP13811.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. CDC 684] Length = 200 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 4/139 (2%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87 + ++ + K + +M + +++ ++ + F S + + +++ Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L I VI + E LG + R L+ E + L Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169 Query: 147 NQCISTTQESSPNLEDFYD 165 Q + P Sbjct: 170 EQSFESVVAIEPKFVTTER 188 >gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a] gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805] gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805] gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1] Length = 113 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 98 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 99 NFGVRITEIIKTKNE 113 >gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] Length = 134 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+++++ L V+P + + NG I E+ +G+ Sbjct: 54 ILDIPVKMTVELGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGEVVVMGE 113 Query: 295 NYTIRITDRINFDQKS 310 Y +RI D + ++ Sbjct: 114 QYGVRIADIVTPAERM 129 >gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1] gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1] Length = 149 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ + ++I I T+K+++ L+ G V+ + + ANGK I EL V Sbjct: 66 QRILDIPLSITVVIGTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVV 125 Query: 293 GKNYTIRITDRINFDQKS 310 G+N+ IRI + I +++ Sbjct: 126 GENFGIRIAEIIEKEERV 143 >gi|332305667|ref|YP_004433518.1| flagellar motor switch protein FliN [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172996|gb|AEE22250.1| flagellar motor switch protein FliN [Glaciecola agarilytica 4H-3-7+YE-5] Length = 131 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 1/95 (1%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ++ + + V I + ++++++ L G V+ + Sbjct: 36 EEDKDITPAEKRKL-DTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDV 94 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 NG I E+ V + IR+TD I+ ++ K Sbjct: 95 LVNGTLIAHGEVVVVNDKFGIRLTDVISQLERIKK 129 >gi|107025883|ref|YP_623394.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia AU 1054] gi|116692933|ref|YP_838466.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia HI2424] gi|170737802|ref|YP_001779062.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] gi|105895257|gb|ABF78421.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia AU 1054] gi|116650933|gb|ABK11573.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia HI2424] gi|169819990|gb|ACA94572.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] Length = 384 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 71/297 (23%), Gaps = 31/297 (10%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P+ A D I ++L L + + V++ H Sbjct: 101 IDPLAEAEWLADAADPAVPAVIRAALLADLCAPLTAVLQAATRQRVEL-LPPPDGVPAWH 159 Query: 73 IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 L W + + + + A+ Y Sbjct: 160 A-----SPAALR-FELRRADATWRCHGALLFDAPDALAVFFAAAPAALADARAAYANLP- 212 Query: 129 TVEKKLAKRTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 L +E + + RL I Sbjct: 213 ------VPLVFEIGRTELTTAELADVVGGDIIAIERWQAHEQNLLCVARLPAAPAWEITG 266 Query: 187 NMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + + + +P L T + + + + R L V++ Sbjct: 267 RPSGNRLTVERIREMP---LEPTRTDSAPPTTHDAPPAD------VPRSLDGLAVDLRFE 317 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 + L ++ L+ G VI L ANG I + L VG+ +R+ Sbjct: 318 LPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 374 >gi|116626505|ref|YP_828661.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus Ellin6076] gi|116229667|gb|ABJ88376.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus Ellin6076] Length = 282 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + + + +KDV+ L G ++ + N I E+ Sbjct: 200 MELLLDVELPVSISFGKTEILMKDVLKLTTGSIVELNRGVNEPVEVLVNHCLIARGEVVV 259 Query: 292 VGKNYTIRITDRINFDQKSLKNFL 315 V NY +RI +N Q L++ Sbjct: 260 VEGNYGVRIQQIVNR-QDRLRSIR 282 >gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] Length = 116 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + VN+ + + + D++ + +G VI + NG + E+ V Sbjct: 36 IRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVRVNGTLLGHAEVVVVNN 95 Query: 295 NYTIRITDRINFDQKSLKNFLH 316 Y +R+ + ++ ++ L+ + Sbjct: 96 KYGLRLVNVVD-EKDMLRGLAN 116 >gi|34498584|ref|NP_902799.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] gi|34104438|gb|AAQ60796.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] Length = 147 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + K +++++ L G V+ + NG I E+ V Sbjct: 65 DMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 124 Query: 293 GKNYTIRITDRINFDQKS 310 + IR+TD I ++ Sbjct: 125 NDKFGIRLTDIITPAERI 142 >gi|74055042|gb|AAZ95847.1| FliN [Aeromonas hydrophila] Length = 130 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 1/113 (0%) Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + L S + + V I + + ++++++ L Sbjct: 17 ALEEQVIAEAKPAPLEELTDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQL 75 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 76 NQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 128 >gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073] gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC 39073] Length = 395 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++I+ + ++D+++L G ++ + ++ NG I E+ V Sbjct: 313 DLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQGEVVIV 372 Query: 293 GKNYTIRITDRINFDQKSLKNFLH 316 +N+ +RIT + ++ + + Sbjct: 373 NENFGVRITHILEPYER-INHLRQ 395 >gi|262276387|ref|ZP_06054196.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] gi|262220195|gb|EEY71511.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] Length = 129 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +++ + D + V I + +++++ L G V+ Sbjct: 29 LDELVDETPPINADEARKL-DAILDIPVTISMEVGRTNINIRNLLQLNQGSVVELDRLAG 87 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 88 ESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127 >gi|315127311|ref|YP_004069314.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913] gi|315015825|gb|ADT69163.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913] Length = 132 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + S + + V I + K +++++ L G V+ Sbjct: 32 LDELDDSKHELSGEEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAG 90 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 91 EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130 >gi|311992319|gb|ADQ26733.1| flagellar motor switch protein [Aeromonas hydrophila] Length = 129 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 1/105 (0%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + L S + + V I + + ++++++ L G V+ Sbjct: 24 EAKPAPLEELKDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVEL 82 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 83 DRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 127 >gi|224826625|ref|ZP_03699726.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] gi|224601226|gb|EEG07408.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] Length = 143 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + +++++ L G V+ + NG I E+ V Sbjct: 61 DMILDIPVQLTVELGRTRIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 120 Query: 293 GKNYTIRITDRINFDQKS 310 + IR+TD I ++ Sbjct: 121 NDKFGIRLTDIITPAERI 138 >gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31] gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a] gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7] gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a] gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b] gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23] gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a] gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a] gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a] gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1] gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26] gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi] gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi] gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31] gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a] gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7] gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a] gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b] gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23] gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a] gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a] gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a] gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1] gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26] gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40] Length = 113 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 98 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 99 NFGVRITEIIKTKNE 113 >gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797] gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797] Length = 226 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 34/73 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ + + +++V+ +K G V+P + NG+ I E+ + Sbjct: 153 LQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVLND 212 Query: 295 NYTIRITDRINFD 307 N+ +R+ + I+ + Sbjct: 213 NFCVRVAEIISPE 225 >gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16] gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16] Length = 248 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 41/103 (39%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + + + Y + + + I K + DV+ L G VI Sbjct: 146 ESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRS 205 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + A + NG+ I E+ V + Y IRIT+ ++ ++ + Sbjct: 206 AGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAEQQNRQ 248 >gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi] gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr] gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04] gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi] gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr] gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04] Length = 113 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 99 NFGVRITEIIKTKNE 113 >gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035] gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035] Length = 102 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V++ + + TL+D++ L G V+ + NG I E+ VG+ Sbjct: 24 LANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVVVVGE 83 Query: 295 NYTIRITDRINFDQKS 310 + IR D ++ Q+ Sbjct: 84 KFGIRFGDIVDPRQRI 99 >gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM 3776] gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM 3776] Length = 189 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++I + + + +V+ L+ G V+P + NGK + E+ + Sbjct: 114 DALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVL 173 Query: 293 GKNYTIRITDRINFD 307 N+ +RI + + D Sbjct: 174 NDNFCVRIAEILTQD 188 >gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC 25644] gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC 25644] Length = 409 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 35/78 (44%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +N+ + K +++++++ G VI + NGK I E+ + Sbjct: 328 DLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPLDILLNGKLIAQGEVVVI 387 Query: 293 GKNYTIRITDRINFDQKS 310 N+ +RIT+ ++ Q+ Sbjct: 388 NDNFGVRITNILSQSQRI 405 >gi|134294004|ref|YP_001117740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia vietnamiensis G4] gi|134137161|gb|ABO58275.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia vietnamiensis G4] Length = 392 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 74/291 (25%), Gaps = 19/291 (6%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 L P+ G D I ++L L + + V++ S Sbjct: 109 LDPLAETEWLGDAADPAVPAVIRTALLADLAAPLAAVLQAATRQRVEL-LPPPASVPAW- 166 Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + F W + + + + A + + +++ Sbjct: 167 --RTAPAALRFELRRADGAWRCHGALLFDAPDALAV----FFAQPAPARPAPHAAYASLP 220 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 L +E + + R+ I + Sbjct: 221 VPLVFEVGRTELTTAELA-DVVGGDIIAIERWRAHEQNLLCVARVPATPAWEITGRPSGT 279 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + + +P L T + + + R L V++ + Sbjct: 280 RLTVERIREMP---LEPTRTDTPPATAHDAPPDDA-----PRSLDGLAVDLRFELPPTSI 331 Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 L ++ L+ G VI L ANG I + L VG+ +R+ Sbjct: 332 PLGELGALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 382 >gi|313905142|ref|ZP_07838511.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Eubacterium cellulosolvens 6] gi|313470045|gb|EFR65378.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Eubacterium cellulosolvens 6] Length = 578 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S Q + +D ++ + I + + +KD++ L G ++ Sbjct: 477 SLKSPQYTDVPDGGEEVDDNREMLMKVPMEISVEVGRTRKPIKDILELTQGSLVVLDKMA 536 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 A L NG+ I ++ V N+ IRIT+ +N D Sbjct: 537 GEQADLYVNGECIAHGDIVVVEDNFGIRITEILNKD 572 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 65/220 (29%), Gaps = 10/220 (4%) Query: 26 GDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII-HSFKENF 81 GD E ++G + L + +I+ S + + Sbjct: 2 GDTVFNEMELDAIGEIMNISLGASATAVSTMLGTSTNITTPKVSVQSRSEFVFKEIEPAV 61 Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 + S I S V ++ ++G + + +++ + + Sbjct: 62 GVEIQYVEGLSGKNVIMFSREDVRIIVGMMMGMEIPPEEFELDEMNQSAIREVMNQMMGS 121 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS----- 196 + L++ + + S + + + K+ ++ + ++ I + SS Sbjct: 122 SATALSEFLGYRVDISTPVSFEIANEKVFKDKYFSDDKQEVVVRFSLEIGDELSSEFLNI 181 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLID-PFARKT 235 L + ++ L + + S + + P + Sbjct: 182 MSLDLVKKLLEPYADTFSGTGDGSSVTAPGAREIPLEDEV 221 >gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF] gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens QYMF] Length = 393 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 1/111 (0%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P K + + Q+ + + L + A + +++ + + +V+ Sbjct: 283 PSLENSKINVQPVQFQSFDQQSNRGLPENIA-LIQDVPLSVTVELGRTVKKISEVLEFGP 341 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G +I + NG+ + E+ + +NY IRITD + ++ K Sbjct: 342 GTIIELEKVVGEPLDILVNGQYVAKGEVVVIDENYGIRITDIVAPAKRLSK 392 >gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1] gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1] Length = 254 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 39/98 (39%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + + + Y + + + I K + DV+ L G VI Sbjct: 152 ESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRS 211 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + A + NG+ I E+ V + Y IRIT+ ++ + Sbjct: 212 AGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAE 249 >gi|117618193|ref|YP_855912.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559600|gb|ABK36548.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 130 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 1/105 (0%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + L S + + V I + + ++++++ L G V+ Sbjct: 25 EAKPAPLEELKDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVEL 83 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 DRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 128 >gi|59712451|ref|YP_205227.1| flagellar motor switch protein [Vibrio fischeri ES114] gi|197335660|ref|YP_002156670.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11] gi|59480552|gb|AAW86339.1| flagellar motor switch component FliN [Vibrio fischeri ES114] gi|197317150|gb|ACH66597.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11] Length = 129 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + K+ +ED + V I + ++++++ L G V+ Sbjct: 29 LEDLEEKAPEFNEDERRKL-DTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAG 87 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 88 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127 >gi|85711034|ref|ZP_01042094.1| flagellar motor switch protein [Idiomarina baltica OS145] gi|85694947|gb|EAQ32885.1| flagellar motor switch protein [Idiomarina baltica OS145] Length = 140 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V I + + ++++++ L G V+ + NG I E+ V Sbjct: 59 DAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVV 118 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ K Sbjct: 119 NDKFGIRLTDVISQIERIRK 138 >gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM 5305] gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM 5305] Length = 227 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + +++VV+LK G V+P + NG+ I E+ + Sbjct: 152 EMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNGRLIARGEVLVL 211 Query: 293 GKNYTIRITDRINFDQ 308 N+ +R+ + + + Sbjct: 212 NDNFCVRVAEILTPKE 227 >gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus A6] gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus A6] Length = 238 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ I + +++D + L+ G+VI A + NG+ I E+ V + Sbjct: 162 ISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVVVVDQ 221 Query: 295 NYTIRITDRINFDQ 308 +Y +RIT ++ + Sbjct: 222 DYAVRITRILDTAE 235 >gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo] gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1] gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo] gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1] Length = 113 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 99 NFGVRITEIIKTKNE 113 >gi|330828807|ref|YP_004391759.1| flagellar motor switch phosphatase FliY [Aeromonas veronii B565] gi|328803943|gb|AEB49142.1| Flagellar motor switch phosphatase FliY [Aeromonas veronii B565] Length = 130 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 1/105 (0%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + L S + + V I + + ++++++ L G V+ Sbjct: 25 EAKPAPLEELKDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVEL 83 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 DRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 128 >gi|323493118|ref|ZP_08098249.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG 20546] gi|323312589|gb|EGA65722.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG 20546] Length = 272 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 97/286 (33%), Gaps = 42/286 (14%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 I SL L + + ++ S + FS+ + ++N + Sbjct: 25 HVIRDKLESLISSSCNNLTFQLQSWLKSCRIETSVNAVSLHSFSN--NEMEKNATSTFQH 82 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL- 146 + F+ C +I L + GAS + ++LS + +L R Q++ L Sbjct: 83 --NAGGKVFVHCDKATLIKLADCFYGASIDR----AEQNLSNSDLRLQDRIGQQVTQWLA 136 Query: 147 -NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 + + E + +++ +++ S + + ++ Sbjct: 137 PQEMWAN-GEFELAFGTGLY------------------VKIDIQLDDHCGSLHIKLDEQL 177 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + T +E L D F + V ++ ++ K+ L D+++L+ ++ Sbjct: 178 VNTLTEQL------DLQPNESLYDSFCQSLAATPVKLNVLLSQKRMPLSDLLSLQANDIL 231 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 P + +S + +++ + + IN D++ L Sbjct: 232 PIELL--STVPVSIGDQHLFNGSVAEKEGQLVL----IINHDKEPL 271 >gi|206890622|ref|YP_002249867.1| flagellar motor switch protein FliN [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742560|gb|ACI21617.1| flagellar motor switch protein FliN [Thermodesulfovibrio yellowstonii DSM 11347] Length = 139 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + I + +++++ L G V+ + NGK + E+ V + Sbjct: 60 ILDIPLELVVVIGRTRILVQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNE 119 Query: 295 NYTIRITDRINFDQKS 310 + IRITD I+ ++ Sbjct: 120 KFGIRITDIISPQERV 135 >gi|78485772|ref|YP_391697.1| Type III secretion system outer membrane O protein [Thiomicrospira crunogena XCL-2] gi|78364058|gb|ABB42023.1| Flagellar motor switch protein FliN [Thiomicrospira crunogena XCL-2] Length = 153 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + I K +++++++ G VI L NG I E+ + Sbjct: 74 LLDIPVTLQLEIGRAKVSIRNLLSYTQGSVIEMDRLAGEPLDLLVNGTLIAHGEVVVIND 133 Query: 295 NYTIRITDRINFDQKSLK 312 + +R+TD ++ ++ K Sbjct: 134 KFGVRLTDVVSPQERIKK 151 >gi|330447939|ref|ZP_08311587.1| surface presentation of antigens family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492130|dbj|GAA06084.1| surface presentation of antigens family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 255 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/287 (11%), Positives = 89/287 (31%), Gaps = 44/287 (15%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKM--------DLDVDISYTSCQSGKFSHIIHSFKENFV 82 + K ++ L + E + IS + ++ Sbjct: 4 LGKPIHTIKDELTNILNRSLTELTDQIQKWIKSTEFTISIVNIDFQSPQQ-----GQHSA 58 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142 + CS L+I+L + + + + ++ L+ + +L +R Sbjct: 59 LTLKH--DDGGMINFRCSAPLLISLSDRFYNSPVSRLNSVKSQVLTASDFRLQQRLGHLF 116 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202 ++V+ ED ++ + + I ++++ E+ + + I Sbjct: 117 ASVIAP------------EDMWNECDNSLS-----GDIGLVIQLDVSCEDTLGTITICID 159 Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + T + + N + F ++ V ++T + K+ L V+ LK G Sbjct: 160 SCLIQTLTTVIGLQPIDNIN------EQFTKQLESTKVVLNTILCEKQMPLDQVLQLKPG 213 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V + + + + +++ + + IN + Sbjct: 214 DVFDIDLIQSSPISI--GQEHLFNGHVAEQNGQLVL----IINTSKD 254 >gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116] gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S] gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116] gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S] Length = 113 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 99 NFGVRITEIIKTKNE 113 >gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC 51599] gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC 51599] Length = 135 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + I +TT+ +V+ L G V+ + + NG I E+ V Sbjct: 52 ERILDIPVQLSVEIGRTRTTINNVLQLAPGSVVELDAQAGAPMDVLINGYLIAQGEVVVV 111 Query: 293 GKNYTIRITDRINFDQKS 310 + IR+TD + ++ Sbjct: 112 NDRFGIRLTDIVTPAERM 129 >gi|209695732|ref|YP_002263662.1| flagellar motor switch protein [Aliivibrio salmonicida LFI1238] gi|208009685|emb|CAQ79984.1| polar flagellar switch protein FliN [Aliivibrio salmonicida LFI1238] Length = 127 Score = 73.5 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 35/95 (36%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + + V I + ++++++ L G V+ + Sbjct: 31 EETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGESLDV 90 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 NG I E+ V + IR+TD I+ ++ K Sbjct: 91 MVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125 >gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas maltophilia K279a] gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14] gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas maltophilia K279a] gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14] Length = 111 Score = 73.5 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G V+ + NG I E+ + Sbjct: 32 ILDVPVTLSLEVGRARLPIRNLLQLNQGSVVELERGAGESLDVFVNGTLIAHGEVVVIND 91 Query: 295 NYTIRITDRINFDQKS 310 + +R+TD ++ ++ Sbjct: 92 RFGVRLTDVVSPSERI 107 >gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 397 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 36/75 (48%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + ++ + K ++K+++ L G ++ + NGK + E+ + + Sbjct: 318 ILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGETVDIMVNGKYLAKGEVVVIDE 377 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ ++ ++ Sbjct: 378 NFGVRITEIVSPLER 392 >gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia R551-3] gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia R551-3] Length = 111 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G V+ + NG I E+ + Sbjct: 32 ILDVPVTLSLEVGRARLPIRNLLQLNQGSVVELERGAGESLDVFVNGTLIAHGEVVVIND 91 Query: 295 NYTIRITDRINFDQKS 310 + +R+TD ++ ++ Sbjct: 92 RFGVRLTDVVSPSERI 107 >gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827] gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827] Length = 250 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + + T++++++L G VI + A L NG+ I E+ + Sbjct: 169 ELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVVI 228 Query: 293 GKNYTIRITDRINFDQ 308 +N+ IR+T+ I Sbjct: 229 DENFGIRVTEIIKPGD 244 >gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068] gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068] Length = 212 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 34/76 (44%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 +++++ + + L+DV+ L+ G V+ + NG+ I E+ + Sbjct: 135 ELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVNGRLIARGEVLVL 194 Query: 293 GKNYTIRITDRINFDQ 308 N+ +R+ + ++ D Sbjct: 195 NDNFCVRVAELLSGDD 210 >gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans DSM 10331] gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans DSM 10331] Length = 95 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 29/74 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + ++ ++ L G VI + NG + E+ V Sbjct: 14 LRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGTLVAKGEVVVVDD 73 Query: 295 NYTIRITDRINFDQ 308 + +RI + I+ D+ Sbjct: 74 EFGVRILEIISSDE 87 >gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 101 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + T+K+++ L++G VI L N + E+ Sbjct: 16 DELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVVVY 75 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 76 EKNLAIRINEILDSK 90 >gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans DSM 574] gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans DSM 574] Length = 131 Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + L++V+ L +G VI + N ++ E+ V Sbjct: 49 LADVQITISAELGETTLKLREVLNLDVGSVIDLNKSAGDAINIYFNDRKAAKGEVIVVND 108 Query: 295 NYTIRITDRINFD 307 ++ +RI I Sbjct: 109 SFAVRINSIIPPK 121 >gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus 11B] gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus 11B] Length = 123 Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 34/78 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + T++++++L G V+ + L NG I E+ + Sbjct: 43 ELLQNVEMGVTAELGRTRMTVRELLSLAPGMVVELNRAAGSPIDLYVNGTLIARGEVVVI 102 Query: 293 GKNYTIRITDRINFDQKS 310 + + +RI++ + D + Sbjct: 103 DEEFGVRISEIVGPDSER 120 >gi|49184601|ref|YP_027853.1| flagellar motor switch protein, C-terminus [Bacillus anthracis str. Sterne] gi|65319044|ref|ZP_00392003.1| COG1868: Flagellar motor switch protein [Bacillus anthracis str. A2012] gi|227815464|ref|YP_002815473.1| flagellar motor switch protein FliM [Bacillus anthracis str. CDC 684] gi|49178528|gb|AAT53904.1| flagellar motor switch protein, C-terminus [Bacillus anthracis str. Sterne] gi|227003444|gb|ACP13187.1| flagellar motor switch protein FliM [Bacillus anthracis str. CDC 684] Length = 120 Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 40/105 (38%), Gaps = 2/105 (1%) Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTL 253 + + IP ++ + S + + K Q+ + I +K T+ Sbjct: 9 TVRIGIPFLSVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTM 68 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++ ++ G +IP + + +GK ++C +G+ G + Sbjct: 69 GEIEQIEEGDIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 113 >gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17] gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17] Length = 96 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 36/77 (46%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R ++V + I + +L++++ L VI + + NG I E+ V Sbjct: 19 RLLQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGTLIGRGEVVTV 78 Query: 293 GKNYTIRITDRINFDQK 309 G + +R+T+ +N D++ Sbjct: 79 GDRFGVRMTELVNPDKR 95 >gi|307747018|gb|ADN90288.1| Hypothetical protein CJM1_0060 [Campylobacter jejuni subsp. jejuni M1] Length = 123 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + RI KK LKDV+T+ IG V+ + K I E+ V Sbjct: 42 NLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIV 101 Query: 293 GKNYTIRITDRINFDQKSLKNFL 315 N+ ++IT+ I ++ L+ Sbjct: 102 DGNFGVQITE-IGSKKERLEQLR 123 >gi|312884903|ref|ZP_07744593.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367380|gb|EFP94942.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 138 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 2/113 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P+ + + L + QS D + V I + + ++++++ L Sbjct: 24 PEIDVDEVMSAQLDELEDTSEQSSLSDDERRKIDSILDIPVTISMEVGRSQISIRNLLQL 83 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + IR+TD I+ ++ K Sbjct: 84 NQGSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 136 >gi|71042010|pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein gi|71042011|pdb|1YAB|B Chain B, Structure Of T. Maritima Flin Flagellar Rotor Protein Length = 87 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + TLK V+ + G +I + NGK I E+ + Sbjct: 5 ELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVI 64 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +RIT+ ++ ++ Sbjct: 65 DENFGVRITEIVSPKERL 82 >gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM 17241] gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM 17241] Length = 446 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 Q + + +++++ I K +KD++ G VI + Sbjct: 344 PQFTVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIKDIIDFGQGTVIELNKQAGAPV 403 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKN 313 + NG+ + ++ + N+ +RIT+ + + +SLK Sbjct: 404 DIVVNGRLLARGDVVVIDDNFGVRITEIVGTKELMESLKE 443 >gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium HTCC2207] gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium HTCC2207] Length = 108 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 A + V I + ++D++ L G V+ L N + E+ Sbjct: 27 ADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVVELDRIAGEPLDLLVNNTLVAQGEVVL 86 Query: 292 VGKNYTIRITDRINFDQKS 310 V + Y +R+T I + Sbjct: 87 VNERYGVRLTSVIPTADRV 105 >gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855] gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855] Length = 250 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 24/256 (9%), Positives = 62/256 (24%), Gaps = 54/256 (21%) Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 + + V E + G L + +Q + ++ Sbjct: 1 MALDPDWVPLFSEAMFGEEMAPDADGA--------LDLMQEISSQGFGTVQSTLAEEG-- 50 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT------- 209 L + +E + ++++P + Sbjct: 51 -LTLPEVQFDTAAPGQAPPSPDEAAWLVPFTAQRGGGELDGLVLLPDGAEASSDASTTTE 109 Query: 210 -----------------------TLISLSSQNKSENQSEDLIDPFARK------------ 234 S + ++ S + Sbjct: 110 SAPQEAAAGADQSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFK 169 Query: 235 -TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 +++ + + ++ L DV+ L G V+ + ANG+ I E + Sbjct: 170 LLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVID 229 Query: 294 KNYTIRITDRINFDQK 309 + + +RIT+ + + Sbjct: 230 EQFGVRITNLASEGHR 245 >gi|329849953|ref|ZP_08264799.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum C19] gi|328841864|gb|EGF91434.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum C19] Length = 108 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + VNI + ++ ++ L G V+ + + N + + E+ V Sbjct: 32 VFDVPVNISAVLGKSYMSVSQLLKLGAGSVLELDRKVGEAIDIYVNNRLVARGEVVVVDD 91 Query: 295 NYTIRITDRINFDQ 308 + +T+ I + Sbjct: 92 RLGVTMTEIIKSED 105 >gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC BAA-613] gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC BAA-613] Length = 368 Score = 72.7 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +N+ I + LKDV+ G V+ + + NG+ I E+ + Sbjct: 289 IMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVVVIDD 348 Query: 295 NYTIRITDRINF 306 N+ +RI++ +N Sbjct: 349 NFGVRISEIVNT 360 >gi|323490152|ref|ZP_08095372.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2] gi|323396200|gb|EGA89026.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2] Length = 351 Score = 72.7 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 Q T S + + + + + + + + K +KD++ + G Sbjct: 241 QSPEAPTVQNVQFSSFDNTDVASSETNNL-NLLLDIPLQVTVELGRTKRMVKDILEISQG 299 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 +I + N K I E+ + +N+ +R+TD ++ ++ K Sbjct: 300 SIIELDKLAGEPVDILINNKLIAVGEVVVIDENFGVRVTDVLSTAERISK 349 >gi|254683265|ref|ZP_05147126.1| flagellar motor switch protein FliM [Bacillus anthracis str. CNEVA-9066] gi|254734618|ref|ZP_05192330.1| flagellar motor switch protein FliM [Bacillus anthracis str. Western North America USA6153] gi|254741027|ref|ZP_05198715.1| flagellar motor switch protein FliM [Bacillus anthracis str. Kruger B] gi|254755270|ref|ZP_05207304.1| flagellar motor switch protein FliM [Bacillus anthracis str. Vollum] gi|254759806|ref|ZP_05211830.1| flagellar motor switch protein FliM [Bacillus anthracis str. Australia 94] Length = 111 Score = 72.7 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 2/104 (1%) Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLK 254 + IP ++ + S + + K Q+ + I +K T+ Sbjct: 1 MRIGIPFLSVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMG 60 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++ ++ G +IP + + +GK ++C +G+ G + Sbjct: 61 EIEQIEEGDIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 104 >gi|85859178|ref|YP_461380.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] gi|85722269|gb|ABC77212.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] Length = 163 Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + + +++ L G +I + + N + I E+ V + Sbjct: 84 ILDIPLTLSVELGRCRMLISELLQLGQGSIIELVKLAGEPMDVYVNQRLIARGEVVVVNE 143 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD ++ ++ K Sbjct: 144 KFGIRLTDIVSPAERVNK 161 >gi|94264048|ref|ZP_01287848.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] gi|94266366|ref|ZP_01290065.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] gi|93453018|gb|EAT03506.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] gi|93455559|gb|EAT05746.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] Length = 136 Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 28/76 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + ++ L G V+ + N K + E+ V + Sbjct: 57 LLDVPLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGEVVVVNE 116 Query: 295 NYTIRITDRINFDQKS 310 + IR+T+ I+ + Sbjct: 117 RFGIRVTEIISQADRI 132 >gi|218778862|ref|YP_002430180.1| flagellar motor switch protein FliN [Desulfatibacillum alkenivorans AK-01] gi|218760246|gb|ACL02712.1| Flagellar motor switch protein FliN [Desulfatibacillum alkenivorans AK-01] Length = 119 Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + ++I + +KD++ L G V+ + NGK E+ V + Sbjct: 40 ILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVVVNE 99 Query: 295 NYTIRITDRINFDQKSLKNFL 315 + +R+TD ++ Q+ +K+ Sbjct: 100 KFGVRLTDIVSP-QERIKSLR 119 >gi|91224471|ref|ZP_01259733.1| type III secretion protein [Vibrio alginolyticus 12G01] gi|91190813|gb|EAS77080.1| type III secretion protein [Vibrio alginolyticus 12G01] Length = 322 Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 38/99 (38%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 +L K N ++ QL V + I + TL+ + L+ G V Sbjct: 222 DQTLHIMEKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQP 281 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L ANGK I CEL V ++ +R+ + Q+ Sbjct: 282 VSKPVTLRANGKIIGECELVNVNEHLGVRVLELFGGTQE 320 >gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] Length = 84 Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 33/71 (46%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + +N+ + + ++++++ L G +I L NGK I E+ + + Sbjct: 1 MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEC 60 Query: 296 YTIRITDRINF 306 + +R+TD ++ Sbjct: 61 FGVRVTDIVDS 71 >gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3] gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3] Length = 116 Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + I + +KD++ L G ++ K L NG I E+ Sbjct: 35 DLLMDVQVTLSVEIGRTRLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVES 94 Query: 293 GKNYTIRITDRINFDQKSLK 312 + +R+ D ++ ++ K Sbjct: 95 AGQFGLRLIDVVSPSERLKK 114 >gi|51246521|ref|YP_066405.1| flagellar motor switch protein (FliN) [Desulfotalea psychrophila LSv54] gi|50877558|emb|CAG37398.1| probable flagellar motor switch protein (FliN) [Desulfotalea psychrophila LSv54] Length = 123 Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 Y + + + + K +KD++ + G VI L N + I E +G Sbjct: 43 LYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDPLDLYVNSRLIARGEAVMIGD 102 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD ++ + Sbjct: 103 KFGIRLTDVVSASDRL 118 >gi|322421723|ref|YP_004200946.1| flagellar motor switch protein FliN [Geobacter sp. M18] gi|320128110|gb|ADW15670.1| flagellar motor switch protein FliN [Geobacter sp. M18] Length = 101 Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K ++DV+ L G V+ + N K + E V Sbjct: 22 IMDIPLQLTVELGRTKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAVVVND 81 Query: 295 NYTIRITDRINFDQKS 310 + IR+ D ++ +++ Sbjct: 82 KFGIRLLDIVSPNERV 97 >gi|84514808|ref|ZP_01002171.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis SKA53] gi|84510967|gb|EAQ07421.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis SKA53] Length = 102 Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 +N+ ++ D + V + + + ++ +++ L G V+ Sbjct: 2 KEQKMENQDKDPKGPETDKLR-ALENIEVEMSVEVGRTEISISELLRLNEGSVVELDRLA 60 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ VG+ + IR +D ++ + + Sbjct: 61 GEPLDILVNGTLIAKGEIVMVGERFGIRFSDIVDPENRV 99 >gi|28901395|ref|NP_801050.1| putative flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836038|ref|ZP_01988705.1| putative flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|260362949|ref|ZP_05775818.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] gi|260880236|ref|ZP_05892591.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|260895353|ref|ZP_05903849.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|260901178|ref|ZP_05909573.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|28809942|dbj|BAC62883.1| putative flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|29423527|gb|AAO73589.1| lateral flagellar FliM-like motor switch protein [Vibrio parahaemolyticus] gi|149750792|gb|EDM61537.1| putative flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|308085727|gb|EFO35422.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|308092442|gb|EFO42137.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|308109388|gb|EFO46928.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|308112168|gb|EFO49708.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] Length = 272 Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 87/305 (28%), Gaps = 48/305 (15%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQ 66 + PL LL + I +L L + + + V+ S TS Sbjct: 10 SDIKPLDVELLGKPIH------IIRDKLENLISESCSSLTNELQNWLSTNKVEASLTSVD 63 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 +FS + + F+ ++ L + GA+ E Sbjct: 64 LHRFSPAMMDKDQTS----THKHQEGGMVFVHGDTQTLVKLADRFYGANTERSVAT---- 115 Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 L+ + +L +R I L E + Sbjct: 116 LTASDLRLQERISRIIIGWLAPQDMWEA-CEYE------------------APRGIGLCV 156 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +N+T E S L + + DL +PF R V ++ Sbjct: 157 QLNITFEGYQGSMYLKLDTHLIQTLIEQL------ELQSDVDLYEPFCRSLESTPVRLNV 210 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ K L DVV+LK ++P +S + +++ + + Sbjct: 211 VLSKKTMALSDVVSLKPDDIMPIELL--NTVPVSIGNQPLFTGRIAEQDGQLVL----IF 264 Query: 305 NFDQK 309 N D++ Sbjct: 265 NPDKE 269 >gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium thermolithotrophum DSM 11699] Length = 122 Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + I L++++ L ++ + NGK + +L + +NY Sbjct: 44 DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIRENY 103 Query: 297 TIRITDRINFDQKS 310 I+IT I +++ Sbjct: 104 GIKITQIITPEERM 117 >gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM 10542] gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM 10542] Length = 247 Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R Y + + + I K ++ V+ L G VI + A L NG+ I E+ + Sbjct: 169 RLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGSPADLMVNGRLIARGEVVVI 228 Query: 293 GKNYTIRITDRINFDQ 308 ++Y +RIT+ ++ + Sbjct: 229 DEDYGLRITEIVDLAE 244 >gi|315497631|ref|YP_004086435.1| flagellar motor switch protein flin [Asticcacaulis excentricus CB 48] gi|315415643|gb|ADU12284.1| flagellar motor switch protein FliN [Asticcacaulis excentricus CB 48] Length = 110 Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 29/74 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + VNI + ++ ++ L G V+ + + N + + E+ V + Sbjct: 34 VFDVPVNISAVLGKAYMSVSQLLKLGQGSVLELDRKVGEAIDIYVNNRLVARGEVVVVDE 93 Query: 295 NYTIRITDRINFDQ 308 + +T+ I + Sbjct: 94 RLGVTMTEIIKSED 107 >gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM 14863] gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 227 Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + + + + + L +++++ G VI + NG + E+ Sbjct: 145 ALRGVLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEV 204 Query: 290 GRVGKNYTIRITD 302 +G+ Y IRI + Sbjct: 205 IAIGEKYGIRIVE 217 >gi|119953076|ref|YP_945285.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135] gi|119861847|gb|AAX17615.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135] Length = 114 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK I E+ + + Sbjct: 40 LMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVIAKGEVVVIDE 99 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 100 NFGVRITEIIKIKNE 114 >gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus B316] gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus B316] Length = 412 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 28/70 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + D++ G +I + NGK + E+ + + Sbjct: 342 IKDVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEVVVIEE 401 Query: 295 NYTIRITDRI 304 ++ +R+T+ + Sbjct: 402 SFGVRVTEIV 411 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 62/185 (33%), Gaps = 5/185 (2%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-S 90 + + + ++ V+I+ + + H+I +++ VF Q + Sbjct: 58 KDAIGEVANISMGSSATTLYSLVNQKVNITTPQVELANWEHVIDNYERPCVFIQIKYTVG 117 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 + + V+ + + ++G T ++ LS + + + + + L+ Sbjct: 118 LDGTNILILKEHDVMVITDLMMGGDGTNTEGEIGELQLSAISEA-MNQMMGAAATSLSTM 176 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNR-LSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207 I+ + SP D+ + I+ M + + V S+ + + P + Sbjct: 177 INQKVDISPPQATLLDMINDDPSDIAEFLTGTFVRISFKMQVGDLVDSTLMQLYPIDFAK 236 Query: 208 KTTLI 212 Sbjct: 237 TLKDT 241 >gi|187918151|ref|YP_001883714.1| flagellar motor switch protein FliN [Borrelia hermsii DAH] gi|119860999|gb|AAX16794.1| flagellar motor switch protein FliN [Borrelia hermsii DAH] Length = 114 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 40 LMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVVAKGEVVVIDE 99 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 100 NFGVRITEIIKIKNE 114 >gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 408 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K +++++ G +I + NGK I S E+ + + Sbjct: 333 LLDVALEVSVELGRTKKKIREILDFSEGSIIELDKLVGEPIDILVNGKFIASGEVVVIDE 392 Query: 295 NYTIRITDRINFDQKS 310 N+ +RI I + + Sbjct: 393 NFGVRIKSIIKPENRI 408 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 24/209 (11%), Positives = 60/209 (28%), Gaps = 3/209 (1%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-K 78 R + +G + ++ V I+ + +I S Sbjct: 28 RSSSGHALTPDEIDALGEIGNINMGTAATTLFALLNHKVMITTPHVELLTAQELIDSVAP 87 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 + S + + + V + + ++G + N + + + Sbjct: 88 DIVTVSVDYTVGLTGTNLLMLKESDVRIIADLMMGGVGLDNGEELNELHLSAISEAMNQM 147 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN--VASS 196 I S ++Q + SP ++ K V ++ M I + + S Sbjct: 148 IGSSSTSMSQMFDKKIDISPPHAVQFESAKDKIEQLISGENMVVKVSFRMQILDDIIDSE 207 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSE 225 + I+P + ++S + + S Sbjct: 208 LMQILPMSFAKELVDNLMNSMSTMGDVSS 236 >gi|27382113|ref|NP_773642.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] gi|27355283|dbj|BAC52267.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] Length = 116 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 29/76 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K + +++ L G V+ R + N K + E+ V Sbjct: 40 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRRVGEAIDIYVNNKLVARGEVVLV 99 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I ++ Sbjct: 100 EDKLGVTMTEIIKTER 115 >gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1] gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N] gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1] gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N] Length = 98 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R + V + + + T++D++ L G V+ + NG I E+ V Sbjct: 18 RLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMV 77 Query: 293 GKNYTIRITDRINFDQK 309 G+ + IR I +++ Sbjct: 78 GERFGIRFGQIIEPEKR 94 >gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila] Length = 125 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 Q+ V + + + +L +++ ++ G VI + NG+ + E+ V Sbjct: 47 RQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGEPLDVRVNGRLLAKGEVVVVNGK 106 Query: 296 YTIRITDRINFD 307 Y +R+ D I+ + Sbjct: 107 YGLRLVDVIDTN 118 >gi|167626140|ref|YP_001676434.1| hypothetical protein Shal_4235 [Shewanella halifaxensis HAW-EB4] gi|167356162|gb|ABZ78775.1| conserved hypothetical protein [Shewanella halifaxensis HAW-EB4] Length = 293 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 30/294 (10%), Positives = 81/294 (27%), Gaps = 28/294 (9%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ L+ + +E + + L I ++ +S ++ Sbjct: 17 DVRPV--ALIKEKLARSRLLMQLESCRRPIMDAVNELLTPITRQGHYGLSKVSLSA---- 70 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 K + + + + + L G+ + R+ S Sbjct: 71 KANVVTPQLHHAWFLLSYNRIDLGWWL---IDKCTLDQLASGYYGSCSSALQSPM-RAPS 126 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E +L KR + + L P E D L+ N + + Sbjct: 127 QSEYRLVKRLMMAVIRTL-----------PVTEIDEDKLELELVMNTTPIKAPVCCELAF 175 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + + + + L ++ Q +L A + Q+ + + Sbjct: 176 PAAHAGPALCFYMAEHLLE-----LMAEQPSQYQADPELSLKLAHRLKQIPLRTLLELGH 230 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + + +L +G ++P + + ++ + ++T Sbjct: 231 QSMPVTSLQSLAVGDILPMNLHSRCPVT--VGKRPLFYATVHTHEGQMVAKLTQ 282 >gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17029] gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17029] Length = 98 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R + V + + + T++D++ L G V+ + NG I E+ V Sbjct: 18 RLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMV 77 Query: 293 GKNYTIRITDRINFDQK 309 G+ + IR I +++ Sbjct: 78 GERFGIRFGQIIEPEKR 94 >gi|203284198|ref|YP_002221938.1| flagellar motor switch protein [Borrelia duttonii Ly] gi|203287737|ref|YP_002222752.1| flagellar motor switch protein [Borrelia recurrentis A1] gi|201083641|gb|ACH93232.1| flagellar motor switch protein [Borrelia duttonii Ly] gi|201084957|gb|ACH94531.1| flagellar motor switch protein [Borrelia recurrentis A1] Length = 114 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 40 LMDVSMQVTVELGRTERKIKDILAMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 99 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 100 NFGVRITEIIKIKNE 114 >gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17025] gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17025] Length = 98 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R + V + + + T++D++ L G V+ + NG I E+ V Sbjct: 18 RLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMV 77 Query: 293 GKNYTIRITDRINFDQK 309 G+ + IR I +++ Sbjct: 78 GERFGIRFGQIIEPEKR 94 >gi|71282178|ref|YP_268252.1| flagellar motor switch protein [Colwellia psychrerythraea 34H] gi|71147918|gb|AAZ28391.1| flagellar motor switch protein FliN [Colwellia psychrerythraea 34H] Length = 131 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V I + ++++++ L G V+ + NG I E+ V Sbjct: 50 DAILDIPVTISMEVGRSNISIRNLLQLNQGSVVELDRVAGESLDVLVNGTLIAHGEVVVV 109 Query: 293 GKNYTIRITDRINFDQKSLK 312 + IR+TD ++ ++ K Sbjct: 110 NDKFGIRLTDVVSQVERIKK 129 >gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8] gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8] Length = 236 Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 33/77 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + ++ L DV+ L G V+ + ANG+ I E + Sbjct: 155 KLLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVI 214 Query: 293 GKNYTIRITDRINFDQK 309 + + +RIT+ + + Sbjct: 215 DEQFGVRITNLASEGHR 231 >gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus 82-40] gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp. fetus 82-40] Length = 101 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + T+K+++ L++G VI L N + E+ Sbjct: 16 DELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVMVY 75 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 76 EKNLAIRINEILDSK 90 >gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] Length = 115 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 30/75 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + V + + + + D++ L G V+ + + N + + E+ V Sbjct: 40 EQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVARGEVVLV 99 Query: 293 GKNYTIRITDRINFD 307 + + +T+ I D Sbjct: 100 DERLGVTMTEIIKND 114 >gi|302387781|ref|YP_003823603.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1] gi|302198409|gb|ADL05980.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium saccharolyticum WM1] Length = 456 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 35/96 (36%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + + + + + + + I + +K+++ G ++ Sbjct: 361 PQNSLREGEANYEEQEENRELIMGVPLEVSVEIGRTRKLVKEILEFTKGSLVILDKLAGE 420 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L NG+ I ++ V N+ IRIT+ + + Sbjct: 421 QVDLYVNGRCIAKGDVVVVDDNFGIRITEITKRNAE 456 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 20/185 (10%), Positives = 56/185 (30%), Gaps = 4/185 (2%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI-IHSFKENFVFSQA 86 + + ++ VDI+ + I + + Sbjct: 7 SAFEIDAIGEILNISLGASATAVSTMLNARVDITTPVVRVLTKDEFEISNLEPAIGVEIT 66 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 +S S + + + V +++ L+G N + ++ + + + L Sbjct: 67 YISGLSGSNLMLLKRHDVKVIVDMLMGMETPEEEFELNELNISAICEVMNQMMGSSATAL 126 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE-FVTTINMNMTIEN-VASSFVLIIPQE 204 ++ +S T S F + +E + + + I + + S F+ ++P Sbjct: 127 SEFLSKTVNISTPTS-FEVGNINDFKDKYYHDENLMVVVGFTLKIADQLESEFINVMPPS 185 Query: 205 TLLKT 209 + Sbjct: 186 LAKEL 190 >gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630] gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile QCD-63q42] gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC 43255] gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile] Length = 124 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ L + + I K TL+D++ L G +I + + K + ++ V Sbjct: 43 QRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLAYGKVVVV 102 Query: 293 GKNYTIRITDRINFDQKSLKNFL 315 N+ ++IT ++ ++ +K+ + Sbjct: 103 DLNFGVKITSIVS-EEDMVKSLV 124 >gi|328469329|gb|EGF40275.1| putative flagellar motor switch protein [Vibrio parahaemolyticus 10329] Length = 272 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 83/280 (29%), Gaps = 38/280 (13%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 I +L L + + + V+ S TS +FS + + Sbjct: 27 IRDKLENLISESCSSLTNELQNWLSTNKVEASLTSVDLHRFSPAMMDKDQTS----THKH 82 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 F+ ++ L + GA+ E L+ + +L +R I Sbjct: 83 QEGGMVFVHGDTQTLVKLADRFYGANTERSVAT----LTASDLRLQERISRIIIG----- 133 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 Q+ E + + +N+T E S L + + Sbjct: 134 WLAPQDMWEACEYE------------APRDIGLCVQLNITFEGYQGSMYLKLDTHLIQTL 181 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 DL +PF R V ++ ++ K L DVV+LK ++P Sbjct: 182 IEQL------ELQSDVDLYEPFCRSLESTPVRLNVVLSKKTMALSDVVSLKPDDIMPIEL 235 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +S + +++ + + N D++ Sbjct: 236 L--NTVPVSIGNQPLFTGRIAEQDGQLVL----IFNPDKE 269 >gi|91223207|ref|ZP_01258473.1| putative flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|91192020|gb|EAS78283.1| putative flagellar motor switch protein [Vibrio alginolyticus 12G01] Length = 272 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 88/299 (29%), Gaps = 38/299 (12%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL-DVDISYTSCQSGKF 70 P+ L + I + +L L + + V+ S TS +F Sbjct: 8 PISDSQLLDVELLGKPIHIIREKLDNLISESCSNLTTELQNWLSTGKVEASLTSVDLHRF 67 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 + + ++ + FI + + +I L + GAS E L+ Sbjct: 68 TSVEMDKEQTSTYQHQE----GGMVFIHGNPHTLIKLADRFYGASAERSAAT----LTAS 119 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 + +L +R I E E + +N+ Sbjct: 120 DLRLQERISRIIIG-----WLAPGEMWDTGEYE------------TPRGIGINVQLNIAF 162 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 ++ S L + + DL PF R V ++ ++ KK Sbjct: 163 DDHQGSIHLKLDGHLIQTLIEQL------ELQPDTDLFQPFCRSLETTPVRLNVVLSKKK 216 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L DVV L+ ++P +S + +++ + + N D++ Sbjct: 217 MPLSDVVGLQPNDILPIELL--NTVPVSIGNQSLFTGRIAEQDGQLVL----IFNPDKE 269 >gi|254228244|ref|ZP_04921673.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp. Ex25] gi|262394134|ref|YP_003285988.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25] gi|151939317|gb|EDN58146.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp. Ex25] gi|262337728|gb|ACY51523.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25] Length = 322 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K N ++ QL V + I + TL+ + L+ G V L Sbjct: 229 EKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTL 288 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ANGK I CEL V ++ +R+ + Q+ Sbjct: 289 RANGKIIGECELVNVNEHLGVRVLELFGGTQE 320 Score = 37.3 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR--EKTCAILSANGKEIY 285 + L V + + TL + +L++G VI F K AI + + ++ Sbjct: 159 SAALQARHLALPVWLS--LGRTHLTLSEFNSLELGDVIFFDDGYIAKQQAIFQVSNQNLW 216 Query: 286 SCEL 289 C+L Sbjct: 217 RCQL 220 >gi|197120187|ref|YP_002140614.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem] gi|253702496|ref|YP_003023685.1| flagellar motor switch protein FliN [Geobacter sp. M21] gi|197089547|gb|ACH40818.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem] gi|251777346|gb|ACT19927.1| flagellar motor switch protein FliN [Geobacter sp. M21] Length = 101 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K ++DV+ L G V+ + N K + E V Sbjct: 22 IMDIPLQLTVELGRSKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAVVVND 81 Query: 295 NYTIRITDRINFDQKS 310 + IR+ D ++ +++ Sbjct: 82 KFGIRLLDIVSPNERV 97 >gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1] gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1] Length = 137 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 1/91 (1%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + DL + + + R+ +KD++ L G ++ + Sbjct: 44 DVSTDGDLPKNL-ELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVELEKEADDPLEIYV 102 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 N + + E+ + IRITD ++ ++ Sbjct: 103 NDRLLAYGEVVMIKDKLGIRITDIVSLKERL 133 >gi|148266211|ref|YP_001232917.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4] gi|146399711|gb|ABQ28344.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4] Length = 103 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 4/99 (4%) Query: 216 SQNKSENQSEDLIDPFA----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 N+ + E + + + + + K +KD++ L G V+ Sbjct: 1 MVNEKIDSDELNNNSLEVKNLEFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLA 60 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K + E + + IR+ D ++ +++ Sbjct: 61 GEPLDVFVNSKLVARGEAVVINDKFGIRLVDIVSPNERV 99 >gi|222053614|ref|YP_002535976.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32] gi|221562903|gb|ACM18875.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32] Length = 100 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 2/100 (2%) Query: 217 QNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++ E + + + + K +KD++ L G V+ Sbjct: 1 MTETGELEEQKNAEMKNLDFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAGEP 60 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + N K + E + + IR+ D ++ +++ K Sbjct: 61 LDVFVNSKLVARGEAVVINDKFGIRLVDIVSPNERVEKAL 100 >gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71] gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71] Length = 117 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + I K +KD++ L G ++ K L NG I E+ Sbjct: 36 DLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVES 95 Query: 293 GKNYTIRITDRINFDQKSLK 312 + +R+ D ++ ++ K Sbjct: 96 AGQFGLRLIDVVSPSERLKK 115 >gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile QCD-66c26] gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP 107932] gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile QCD-76w55] gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile QCD-97b34] gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile QCD-37x79] gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile R20291] gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile QCD-32g58] gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile R20291] Length = 124 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ L + + I K TL+D++ L G +I + + K + ++ V Sbjct: 43 QRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELNTLADQDVEILIDNKVLAYGKVVVV 102 Query: 293 GKNYTIRITDRINFDQKSLKNFL 315 N+ ++IT ++ ++ +K+ + Sbjct: 103 DLNFGVKITSIVS-EEDMVKSLV 124 >gi|39995530|ref|NP_951481.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA] gi|39982293|gb|AAR33754.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA] gi|298504530|gb|ADI83253.1| flagellar motor switch protein FliN [Geobacter sulfurreducens KN400] Length = 101 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 36/93 (38%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K E + +L + + + + K +KDV+ L G V+ + Sbjct: 5 TKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDV 64 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 N K + E V + + +R+ D ++ +++ Sbjct: 65 FVNSKLVARGEAVVVNEKFGVRLVDIVSPNERV 97 >gi|328468942|gb|EGF39902.1| type III secretion system protein [Vibrio parahaemolyticus 10329] Length = 321 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V + Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGTQE 319 >gi|260365111|ref|ZP_05777682.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus K5030] gi|260876606|ref|ZP_05888961.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AN-5034] gi|260895033|ref|ZP_05903529.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus Peru-466] gi|260900956|ref|ZP_05909351.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ4037] gi|308086011|gb|EFO35706.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus Peru-466] gi|308093588|gb|EFO43283.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AN-5034] gi|308110725|gb|EFO48265.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ4037] gi|308111696|gb|EFO49236.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus K5030] Length = 321 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V + Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGTQE 319 >gi|153836164|ref|ZP_01988831.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ3810] gi|149750439|gb|EDM61184.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ3810] Length = 321 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V + Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGTQE 319 >gi|28898445|ref|NP_798050.1| type III secretion system protein [Vibrio parahaemolyticus RIMD 2210633] gi|28806662|dbj|BAC59934.1| putative translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] Length = 328 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V + Sbjct: 253 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 312 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 313 LGVRVLELFGGTQE 326 >gi|124516301|gb|EAY57809.1| flagellar motor switch protein FliN [Leptospirillum rubarum] gi|206603144|gb|EDZ39624.1| flagellar motor switch protein FliN [Leptospirillum sp. Group II '5-way CG'] Length = 125 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + R+ + +KD++ L G V+ + N K + E+ V Sbjct: 47 LLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEVVMVND 106 Query: 295 NYTIRITDRINFDQKS 310 Y +R+TD ++ ++ Sbjct: 107 KYGVRLTDIVSPIERI 122 >gi|254417867|ref|ZP_05031591.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3] gi|196184044|gb|EDX79020.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3] Length = 110 Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 29/74 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ VNI + ++ ++ L G V+ + + N + I E+ V Sbjct: 34 VFEVPVNISAVLGKSHMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLIARGEVVVVDD 93 Query: 295 NYTIRITDRINFDQ 308 + +T+ I + Sbjct: 94 RLGVTMTEIIKTED 107 >gi|262284526|gb|ACY41063.1| VscQ [Vibrio alginolyticus] Length = 322 Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K N ++ QL V + I + TL+ + L+ G V L Sbjct: 229 EKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTL 288 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ANGK I CEL V ++ +R+ + Q+ Sbjct: 289 RANGKIIGECELVNVNEHLGVRVLELFGGTQE 320 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR--EKTCAILSANGKEIY 285 + L V + + TL + +L++G VI F K AI + + ++ Sbjct: 159 SAALQARHLALPVWLS--LGRTHLTLSEFNSLELGDVIFFDDGYIAKQQAIFQVSNQNLW 216 Query: 286 SCEL 289 C+L Sbjct: 217 RCQL 220 >gi|146342732|ref|YP_001207780.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278] gi|146195538|emb|CAL79565.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278] Length = 115 Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 29/77 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K + +++ L G V+ + + N + + E+ V Sbjct: 39 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLV 98 Query: 293 GKNYTIRITDRINFDQK 309 + +T+ I D+ Sbjct: 99 EDKLGVTMTEIIKSDRN 115 >gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 315 Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 103/293 (35%), Gaps = 33/293 (11%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF--SQASLSSWSSNFFIGCSNNLVI 105 I + +V ++ + + + V + + + +++ + S ++ Sbjct: 24 NILGSLLGRNVKMTVSGVEETDTDGLAECLPHFNVVIEGRRTANGLTADQLLVFSKEDMV 83 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165 L ++G +T L +LST+++ ++ A ++ + + E + + + Sbjct: 84 RLTNYIMGVPIDTDSPLDEIALSTLKEVASQCMTAAVAELNDFLGRDMGEFITRISAYDN 143 Query: 166 IDYLKKNTNR-LSNEFVTTINMNMTIENV-----------ASSFVLIIPQETLLKTTLIS 213 + ++ T + ++ TI+ V VL IP Sbjct: 144 TERVQDLTRVWGMGSPFVIVRLHYTIDGVVDSDAYILASQTMRQVLGIPV-MEEMPMPAI 202 Query: 214 LSSQNKSENQ------------------SEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 K + + I +K + +++ RI ++KD Sbjct: 203 QEHMGKPKEAVSVQEVAFPEFKYTPLQYDREQIGDDKKKLLDITLDVSVRIGSTVCSVKD 262 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 V++ K GQV+ + + A + ANG+ I ++ G ++ RI + + + Sbjct: 263 VLSFKEGQVLVLDKQAGSPADVVANGELIGRGDVLVSGDHFGARIIEIVGKRE 315 >gi|189426341|ref|YP_001953518.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ] gi|189422600|gb|ACD96998.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ] Length = 99 Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 36/93 (38%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +KS+ + + + + + K +KD++ L G V+ + Sbjct: 3 DKSDATEAEQEKKNLEFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDI 62 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 N K + E V + + +R+ D ++ +++ Sbjct: 63 FVNSKLVARGEAVVVNEKFGVRLVDIVSPNERV 95 >gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum deleyianum DSM 6946] gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum deleyianum DSM 6946] Length = 103 Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++V+ + T++ ++ L+ G VI L N K E+ Sbjct: 18 ENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVELYINNKIFGKGEVMVY 77 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 78 EKNLAIRINEILDSK 92 >gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense Az-Fu1] gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense Az-Fu1] Length = 192 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTY-------QLNVNIDTRINLKKTTLKDVVTLKIGQ 263 I + +S+ + +D L + I I K T++++V L Sbjct: 76 PIKDQPKIESKEEKKDRFQNLPADIEKKLNLLLDLPITITVEIGSKVMTIEEIVKLSPSS 135 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318 V+ L NG + EL +V + I+I + + +++ N + K+ Sbjct: 136 VVDLDRFITEPIDLKVNGVLVAKGELYQVEDQFAIKIKEILTKEERV--NLISKQ 188 >gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula baltica SH 1] gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula baltica SH 1] gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula baltica WH47] Length = 141 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 33/73 (45%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ +++ + + L++V+ L+ G V+ + NG+ I E+ + Sbjct: 66 DLLGEVEMDLRIELGRTQMRLEEVLRLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVM 125 Query: 293 GKNYTIRITDRIN 305 N+ +R+T+ + Sbjct: 126 NDNFCVRVTELVG 138 >gi|27904580|ref|NP_777706.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395830|sp|Q89AZ3|FLIN_BUCBP RecName: Full=Flagellar motor switch protein FliN gi|27903977|gb|AAO26811.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 134 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V++ + K T+KD++ L+ ++ + NG I + EL Sbjct: 57 IMDVPVHLTIEVGTVKITIKDLLELRSKSILVLDKHAGDPLNILVNGYVIATGELVVTEN 116 Query: 295 NYTIRITDRIN 305 Y IRI + I+ Sbjct: 117 KYGIRIINIID 127 >gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida subsp. salmonicida A449] gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida subsp. salmonicida A449] Length = 125 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 Q+ V + + + +L +++ ++ G VI + NG+ + E+ V Sbjct: 47 RQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGETLDVRVNGRLLAKGEVVVVNGK 106 Query: 296 YTIRITDRINFD 307 Y +R+ D I+ + Sbjct: 107 YGLRLVDVIDTN 118 >gi|254459518|ref|ZP_05072934.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083] gi|206676107|gb|EDZ40594.1| conserved hypothetical protein [Rhodobacteraceae bacterium HTCC2083] Length = 351 Score = 70.4 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/265 (11%), Positives = 74/265 (27%), Gaps = 14/265 (5%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L + + L + ++ + ++ E++ L S + +I Sbjct: 24 LARAADQAFSLALRVNSIRQSRLDLADVVDQIDEDWALFPL-LHDDGSVGVMCLEPACII 82 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS--TTQESSPNLEDF 163 +E R L+ +K LA + ++ + T + Sbjct: 83 AFVETQTMGRVSA-AVAQPRRLTQTDKALAVAFLEGFLRRFDEALKGAPTAYWTRGYRTE 141 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223 + +L +M + + + L K + Sbjct: 142 DAVATRHMVVLQLDGAEYRGFDMQIEVVEAERPINM----RLFLPIKEKFAKQNAKKKPT 197 Query: 224 SE-----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-L 277 + R NV +D + L ++ TL+ G ++P + Sbjct: 198 KTGVALLESEHTIRRSAMAANVEMDAIMCKVMLPLSELNTLQPGHLVPLPQDAAKQVHLV 257 Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302 ++G+ S LG++ +++ Sbjct: 258 DSSGRSAQSVRLGQLHGMRAVKLLH 282 >gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM 1251] gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas denitrificans DSM 1251] Length = 111 Score = 70.4 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + ++ +++ LK G +I NG+ + E+ K Sbjct: 29 LLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNGRILGRGEVMVYEK 88 Query: 295 NYTIRITDRINF 306 N IRI + ++ Sbjct: 89 NLAIRINEVLDS 100 >gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT 98-5489] gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT 98-5489] Length = 119 Score = 70.4 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 3/100 (3%) Query: 211 LISLSSQNKSENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 Q + ++ + V + K LK+++ + G +I Sbjct: 6 FTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVLFHAELGSTKIALKEILQFEKGSIIDL 65 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + NG+ + E+ KN IR+ + ++ + Sbjct: 66 QKPAGESVEIYINGRIVGKGEVMVYEKNLAIRVNEVLDSN 105 >gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum marinum IMCC1322] gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum marinum IMCC1322] Length = 112 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 40/92 (43%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 +S E + R ++V++ + + ++D++ L G VI + Sbjct: 18 ESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVIELDRLAGDPLDIL 77 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 ANG I E+ VG+ + IR ++ + +++ Sbjct: 78 ANGTMIAKGEVVMVGERFGIRFSEIVAPEKRM 109 >gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum ferrodiazotrophum] Length = 125 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I R+ + +KD++ L G V+ + N + + ++ V Sbjct: 47 LLDVPLTISVRVGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVVLVND 106 Query: 295 NYTIRITDRINFDQKSLK 312 Y IR+TD ++ + K Sbjct: 107 KYGIRLTDIVSPIDRVKK 124 >gi|148253397|ref|YP_001237982.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1] gi|146405570|gb|ABQ34076.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1] Length = 115 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 29/77 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K + +++ L G V+ + + N + + E+ V Sbjct: 39 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLV 98 Query: 293 GKNYTIRITDRINFDQK 309 + +T+ I D+ Sbjct: 99 EDKLGVTMTEIIKSDRN 115 >gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas ingrahamii 37] gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas ingrahamii 37] Length = 120 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V++ + K TLK+++ +K V+ + NGK E+ Sbjct: 46 LNDIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVANG 105 Query: 295 NYTIRITDRINFDQK 309 +Y ++ITD +N D Sbjct: 106 HYGVKITDIVNKDID 120 >gi|78224291|ref|YP_386038.1| flagellar motor switch FliN [Geobacter metallireducens GS-15] gi|78195546|gb|ABB33313.1| Flagellar motor switch FliN [Geobacter metallireducens GS-15] Length = 101 Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K +KDV+ L G V+ + N K + E V + Sbjct: 22 ILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAVVVNE 81 Query: 295 NYTIRITDRINFDQKS 310 + IR+ D ++ +++ Sbjct: 82 KFGIRLVDIVSPNERV 97 >gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] Length = 212 Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + L+DV+ + G V+ + NG+ I E+ + Sbjct: 135 DLVRDVELDVKIELGRTNMYLEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVL 194 Query: 293 GKNYTIRITDRINFD 307 N+ +RI + I D Sbjct: 195 NDNFCVRIAELIVGD 209 >gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1] gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1] Length = 190 Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + I L++++ L ++ L NGK I EL V Sbjct: 105 DLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGELYTV 164 Query: 293 GKNYTIRITDRINFDQKS 310 ++ I+IT I ++ Sbjct: 165 EDHFGIKITSIITVQERM 182 >gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411] gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411] Length = 329 Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 87/289 (30%), Gaps = 29/289 (10%) Query: 18 LARLTGKLGDKKTIEKI-SSSLGYLYKKF---LPKIFKEKMDLDVDISYTS--CQSGKFS 71 + L G + K + ++ K L +E + S Sbjct: 11 IDSLLGGNAEDKQKDNTYGDAINENVSKLFDLLNSSIEEVTKTAFSLEVVSKFIDLNIIQ 70 Query: 72 HIIHSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 SF V + + +S F + + L + +L E +L + L + Sbjct: 71 KNEISFDGKIVINVDVTTGEKNSKFVVLINKKFASILSDLMLMGPGEAKEELESEDLDAL 130 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK---------KNTNRLSNEFV 181 ++ L + +S + + IS ++ + N+ + Sbjct: 131 KE-LFSQIFGHLSTQVKEAISPFISFEVKEATKEPLEIDSDKLYKSQYDVAIPNIENDLI 189 Query: 182 TTINMNMTIENV-----ASSFVLII----PQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 I+ + ++ + +I P + + + + Q + Sbjct: 190 DIISPKIELDEIFKQQEPQEETIIEHEEVPFKEVEEELFKEAAPQASKATL--EAPKNL- 246 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 +++++ RI K +KD++ LK G +I + + NG Sbjct: 247 NLIMDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVNG 295 >gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1] gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4] gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1] gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4] Length = 115 Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 30/75 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + V + + + + D++ L G V+ + + N + + E+ V Sbjct: 40 EQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVARGEVVLV 99 Query: 293 GKNYTIRITDRINFD 307 + + +T+ I D Sbjct: 100 EERLGVTMTEIIKND 114 >gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58] gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58] Length = 111 Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + S+ + + + V + + L +V+ L G ++ + Sbjct: 8 PRMERPEDPVSKMTNNRQFKLLADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELDRQADD 67 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ V Y IRI D + + Sbjct: 68 LLDIMVNGALIAKGEVVTVNGRYGIRIVDIAATENRL 104 >gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] Length = 127 Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%) Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 ++ + + + V+I + K L +++ LK G V+ E + NG Sbjct: 41 GADKEHVSNIS-LLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKING 99 Query: 282 KEIYSCELGRVGKNYTIRITDRINF 306 + E+ Y +R+ I Sbjct: 100 TAFGTGEIVSKNGQYGVRLLSIIKK 124 >gi|258404715|ref|YP_003197457.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM 5692] gi|257796942|gb|ACV67879.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM 5692] Length = 109 Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 31/73 (42%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + + + + +KD++ L+ G VI + N + I E V + Sbjct: 33 VPLQVSAELGTTRILVKDLLQLREGSVIELEKLAGEPLDVFVNSRLIARAEAVVVNEKIG 92 Query: 298 IRITDRINFDQKS 310 +R+TD ++ ++ Sbjct: 93 LRLTDVVSPSERL 105 >gi|83591881|ref|YP_425633.1| flagellar motor switch protein [Rhodospirillum rubrum ATCC 11170] gi|83574795|gb|ABC21346.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum rubrum ATCC 11170] Length = 115 Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 27/76 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 Y + V + + + ++ L G V+ + + N + + E+ V Sbjct: 39 EAVYDIPVQVSAVLGKAHMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 98 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I D+ Sbjct: 99 DDRLGVTMTEIIKSDR 114 >gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 260.94] gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 260.94] gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 102 Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 18 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 78 EKNLAIRINEILDSK 92 >gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228] gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20] gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228] gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20] Length = 102 Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 18 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 78 EKNLAIRINEILDSK 92 >gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614] gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614] Length = 246 Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 6/156 (3%) Query: 154 QESSPNLEDFYDIDYLK--KNTNRLSNEFVTTIN---MNMTIENVASSFVLIIPQETLLK 208 P+L+ + + V I + + +E L++P+ L Sbjct: 86 AALQPSLDAAATALGARSGAARQVDPDTVVDEIAEPFVIVPLEGSDVVAALLVPEALLAH 145 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + + S + +++ + I + T+++++ L G V+ Sbjct: 146 PADDTPALPTTSAAAPTGDRRGI-EMLHGVDMEVTVEIGRARMTVRELLDLAPGAVLELD 204 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + A L NG+ I E+ + +++ +RIT+ + Sbjct: 205 RAAGSPADLLVNGRLIARGEVVVIDEDFGLRITEIV 240 >gi|90422463|ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB18] gi|90104477|gb|ABD86514.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB18] Length = 116 Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 3/94 (3%) Query: 218 NKSENQSEDLIDPFA---RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++ + A + + V + + K + +++ L G V+ + Sbjct: 22 GDVGYSDDEQVSRIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEA 81 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + N + + E+ V + +T+ I ++ Sbjct: 82 IDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER 115 >gi|254461964|ref|ZP_05075380.1| flagellar motor switch protein FliN [Rhodobacterales bacterium HTCC2083] gi|206678553|gb|EDZ43040.1| flagellar motor switch protein FliN [Rhodobacteraceae bacterium HTCC2083] Length = 99 Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R + V + + + T+ +++ L G V+ + NG I E+ V Sbjct: 19 RALENIEVQMSIEVGRTEITIANLLRLNEGSVVELDRLAGEPLDILVNGTMIAKGEVVMV 78 Query: 293 GKNYTIRITDRINFDQKS 310 G+ + IR +D ++ +++ Sbjct: 79 GERFGIRFSDIVDPEKRV 96 >gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92] gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92] Length = 105 Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 28/75 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++V+ + ++ +++ + G VI L N + E+ Sbjct: 20 DELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVY 79 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 80 EKNLAIRINEILDSK 94 >gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10] gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris MCS10] Length = 99 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 37/93 (39%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 +++++ + +++ + + V I + K ++ + + G VIP E Sbjct: 2 AKHQARDDDPQVLECDVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQV 61 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + AN I ++ G + IT + ++ Sbjct: 62 WILANNHPIARGDVVIQGDRIAVSITGPADANE 94 >gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium capsulatum ATCC 51196] gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium capsulatum ATCC 51196] Length = 248 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 28/76 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ R ++ +++++ G V+ L K + E+ V Sbjct: 164 DLLLDIEVDASLRFGSRELAIRELLETGPGDVLELDRHITDPVDLVVGDKIVARGEVVLV 223 Query: 293 GKNYTIRITDRINFDQ 308 N+ +R+T+ + Sbjct: 224 NGNFGLRVTEVAEPKK 239 >gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium DG1235] gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium DG1235] Length = 82 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + ++ + +++V+ L G VI K L N K I E+ V Sbjct: 11 LMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAYGEVVVVED 70 Query: 295 NYTIRITDRINF 306 N+ I+IT+ N Sbjct: 71 NFGIKITEMANG 82 >gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] Length = 110 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + V + + + + D++ L G V+ + + N + + E+ V Sbjct: 36 EQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNNRLVARGEVVLV 95 Query: 293 GKNYTIRITDRINFD 307 + +T+ + + Sbjct: 96 EDRLGVTMTEIVKGE 110 >gi|225569964|ref|ZP_03778989.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM 15053] gi|225161434|gb|EEG74053.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM 15053] Length = 460 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 36/89 (40%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + +L + + + + I K +KDV+ L G ++ L Sbjct: 367 EQSAEETELQESNLELIMGVPLEVSVEIGRTKKLVKDVLELNKGSLVVLDKLAGEQVDLF 426 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307 NG+ I ++ V N+ IRIT+ + + Sbjct: 427 VNGQCIAQGDVVVVDDNFGIRITEILADE 455 Score = 41.9 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 49/178 (27%), Gaps = 10/178 (5%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI-IHSFKENFVFSQASLSS 90 + + +D VDI+ Q + + + Sbjct: 11 IDAIGEILNISLGASATAISTMLDARVDITTPIVQVRNKEEFEFGNLEPAVGVEIIYIEG 70 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + + N V ++E L+G L + Q+ + Sbjct: 71 LTGSNIMLLKRNDVRVIVEMLMG----MEIPEEEFELDEMNISAICEVKNQMMGASATAL 126 Query: 151 STTQE--SSPNLEDFYDIDYLKKNTN--RLSNEFVTTINMNMTIEN-VASSFVLIIPQ 203 S + + +DI+ ++ + I + I + + S F+ ++P Sbjct: 127 SELLGKAVNISTPVSFDIESPEQFKEKYFTEESPMVVIGFTLRIADKMESEFMNLMPI 184 >gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium SS3/4] Length = 445 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 +S ++ + I I K +KD++ G ++ A L Sbjct: 351 ESSGSENGEESANQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLVVLDKMAGEQADLY 410 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307 NG+ + ++ V N+ IRITD + D Sbjct: 411 VNGQCVARGDIVVVEDNFGIRITDIVTRD 439 >gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221] gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 84-25] gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei 269.97] gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni] gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221] gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni CF93-6] gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 81-176] gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 84-25] gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei 269.97] gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni S3] gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni 305] gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 327] Length = 102 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 18 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 78 EKNLAIRINEILDSK 92 >gi|39654324|pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative Flagelar Motor Switch Protein Flin (Tm0680) From Thermotoga Maritima At 1.85 A Resolution gi|39654325|pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative Flagelar Motor Switch Protein Flin (Tm0680) From Thermotoga Maritima At 1.85 A Resolution Length = 96 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + TLK V+ G +I + NGK I E+ + Sbjct: 14 ELLLDIPLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVI 73 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ +RIT+ ++ ++ Sbjct: 74 DENFGVRITEIVSPKERL 91 >gi|91978306|ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB5] gi|91684762|gb|ABE41064.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB5] Length = 116 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 38/109 (34%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 +P L L+ +E + + + + V + + K + +++ L Sbjct: 8 VPLPDLNSADAPLLADVGYNEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVGELLKLG 67 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 G V+ R + N + + E+ V + +T+ I ++ Sbjct: 68 PGAVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERN 116 >gi|23013050|ref|ZP_00053002.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magnetotacticum MS-1] Length = 94 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 27/78 (34%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 Y ++V + + + ++ L G V+ + L N K + E+ Sbjct: 17 REAVYDVSVELSAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKRVCRAEVVV 76 Query: 292 VGKNYTIRITDRINFDQK 309 V + + IT+ + Sbjct: 77 VEDHLAVTITEVLKRAAD 94 >gi|320354330|ref|YP_004195669.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM 2032] gi|320122832|gb|ADW18378.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM 2032] Length = 126 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 37/106 (34%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 T L+ + + + + + + + + LKD++ + G V Sbjct: 17 TEETAELLKEEQPQPAGRGDHAPLTRELEFLFDVPLQVSVEVGRARILLKDLLQMGEGYV 76 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + L N + I E +VG + I++T+ ++ + Sbjct: 77 VELDKLAGEPLDLYVNARLIARGEAVKVGDKFGIKLTEVVSQSDRI 122 >gi|304412522|ref|ZP_07394128.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS183] gi|307307181|ref|ZP_07586919.1| surface presentation of antigens (SPOA) protein [Shewanella baltica BA175] gi|304349164|gb|EFM13576.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS183] gi|306910420|gb|EFN40851.1| surface presentation of antigens (SPOA) protein [Shewanella baltica BA175] Length = 293 Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 86/291 (29%), Gaps = 21/291 (7%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 R + +K ++ L + L + + + + + Sbjct: 19 RPIMLVQEKLARTRLLQQL-EQLHRPLIDAINNILSPLLRQGHPAVSGSTLTEPRTPVIP 77 Query: 80 NFVFSQASLSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 ++ L + + + L N G + + R+ S E +LAK+ Sbjct: 78 EHCYAWFVLKHQQNTLGYWRIDRCTLDQLASNYYGNTSTPLSSPL-RNPSQSEFRLAKKL 136 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + + L PN + ++ + + N T ++ + Sbjct: 137 LLSVVDEL-----------PNSTIDTNTLEVELIKGHMPLTVSAVWSFNFTNGSLTPPML 185 Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 + + L L+ Q K S DL A L + + + ++ + Sbjct: 186 FCLT-----EHLLGHLAEQPKKSEISADLPAKLAVWLKSLPIKMQLTLGQHSIPVQSLSQ 240 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 LK G ++P KT + ++ + ++T + +++ Sbjct: 241 LKTGDILPINLYPKTLLSI--GNTTLFHASVHSHEGQMVAKLTQDVYQNEE 289 >gi|283780013|ref|YP_003370768.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi DSM 6068] gi|283438466|gb|ADB16908.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi DSM 6068] Length = 329 Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R ++ V + + + LK +V L G +I F + L E+ E +V Sbjct: 238 RSILRIEVPVRVTLATTQLPLKRIVELGPGSIIQFEKPCDSELSLQVGEHEVAIGEAVKV 297 Query: 293 GKNYTIRITDRINFDQKS 310 G+ + +R+T + ++ Sbjct: 298 GEKFGLRLTSMVMPPERF 315 >gi|254440105|ref|ZP_05053599.1| flagellar motor switch protein FliN [Octadecabacter antarcticus 307] gi|198255551|gb|EDY79865.1| flagellar motor switch protein FliN [Octadecabacter antarcticus 307] Length = 98 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 33/78 (42%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R + V + + ++ +++ L G V+ + NG +I E+ V Sbjct: 18 RALENIEVEMSIEVGRTDISISELLRLNEGSVVELNRLAGEPLDILVNGTKIAKGEVVMV 77 Query: 293 GKNYTIRITDRINFDQKS 310 G+ + IR ++ ++ + + Sbjct: 78 GERFGIRFSEIVDPESRV 95 >gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides ATCC 15264] gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides ATCC 15264] Length = 109 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + VNI + T+ ++ L G V+ + + N + + E+ V Sbjct: 33 VFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNNRLVARGEVVVVED 92 Query: 295 NYTIRITDRINFDQ 308 + +T+ I + Sbjct: 93 RLGVTMTEIIKTED 106 >gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826] gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826] Length = 105 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 28/75 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++V+ + ++ +++ + G VI L N + E+ Sbjct: 20 DELMDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVY 79 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 80 EKNLAIRINEILDSK 94 >gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS 2060] gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS 2060] Length = 116 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + V + + + + D++ L G V+ + + N + + E+ V Sbjct: 41 EQVFDVPVVVSAVLGASRMPIGDLLRLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLV 100 Query: 293 GKNYTIRITDRINFD 307 + + +T+ + D Sbjct: 101 EERLGVTMTEIVKSD 115 >gi|329888111|ref|ZP_08266709.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] gi|328846667|gb|EGF96229.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] Length = 110 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + VNI + ++ ++ L G V+ + + N + + E+ V Sbjct: 34 VFDVPVNISAVLGKANMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLVARGEVVVVED 93 Query: 295 NYTIRITDRINFDQ 308 + +T+ I + Sbjct: 94 RLGVTMTEIIKTED 107 >gi|299131951|ref|ZP_07025146.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2] gi|298592088|gb|EFI52288.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2] Length = 119 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 33/102 (32%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + E + I + + V + + K + D++ L G V+ Sbjct: 17 ETEAPPLDQAAYSEEEERSARIASDLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPGTVLE 76 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 R + N + + E+ V + +T+ I ++ Sbjct: 77 LDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER 118 >gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267] gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267] Length = 118 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V+ + + ++K ++ L++G VI L N + E+ Sbjct: 33 DELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVMVY 92 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 93 EKNLAIRINEILDSK 107 >gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] Length = 116 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + V + + + + D++ L G V+ + + N + + E+ V Sbjct: 41 EQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNNRLVARGEVVLV 100 Query: 293 GKNYTIRITDRINFD 307 + + +T+ + D Sbjct: 101 EERLGVTMTEIVKSD 115 >gi|255022967|ref|ZP_05294953.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208] Length = 503 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 25/274 (9%), Positives = 75/274 (27%), Gaps = 28/274 (10%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 + + ++ V + + + + + + + S+ S N + Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289 Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163 + + ++ L + ++L + + + +++ + T + SP +E Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222 D + + + + + + P L + Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLTLGIQAKEVAEK 409 Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ++ + + ++ V ++ K L+ ++ Sbjct: 410 EATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILEEIPVTLEVVFGTAKVKLEKFISW 469 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 VI +L+ NG I L RV Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVD 503 >gi|149916493|ref|ZP_01905010.1| hypothetical protein RAZWK3B_12402 [Roseobacter sp. AzwK-3b] gi|149809595|gb|EDM69451.1| hypothetical protein RAZWK3B_12402 [Roseobacter sp. AzwK-3b] Length = 342 Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 58/209 (27%), Gaps = 14/209 (6%) Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI----ST 152 + ++E + + RS++ + + + I ++ + Sbjct: 84 ARLDAQFLAAVIEVQTMGAVQRGDAPE-RSVTPTDAAMVAPLMDAILKGYDEYLTSGAEK 142 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 S D + + + I ++ S L++P+ Sbjct: 143 VARSDWRFGDMVEDARTLALALEMPEYDLFRITADLADGAKTGSLSLLLPRA---PRRDP 199 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 S+++++ V +D + L + L G +P Sbjct: 200 VTSARDRAFAG-----PTLEASALNAPVMLDAVLARLSMPLNKLCALTPGMQLPVPREAL 254 Query: 273 TCAILS-ANGKEIYSCELGRVGKNYTIRI 300 A L A + LG++ +R+ Sbjct: 255 NKAELLGAGQHLVAPVRLGQLNGWRAVRL 283 >gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21] gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21] Length = 104 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 20 EDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 79 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 80 EKNLAIRINEILDSK 94 >gi|144233|gb|AAA23038.1| putative [Caulobacter crescentus CB15] Length = 101 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + VNI + ++ ++ L G ++ + + N + + E+ V + Sbjct: 26 VFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 85 Query: 295 NYTIRITDRINFDQ 308 + +T+ I Sbjct: 86 RLGVTMTEIIKDGD 99 >gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195] gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195] Length = 104 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 20 EDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 79 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 80 EKNLAIRINEILDSK 94 >gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5] gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5] Length = 112 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + + V ++ + TL +++ + IG VI K + NGK I EL Sbjct: 34 ELIQHFSDIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGEL 93 Query: 290 GRVGKNYTIRITDRINFDQ 308 + ++I + + + Sbjct: 94 VIIDGKIGVKIKEVVKEQR 112 >gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni M1] Length = 105 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 21 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 80 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 81 EKNLAIRINEILDSK 95 >gi|32490801|ref|NP_871055.1| hypothetical protein WGLp052 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166007|dbj|BAC24198.1| fliN [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 135 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 L + S + K + S+ + + + + + K T++D++ LK ++ Sbjct: 28 LKANSEEIKEIDSSKIKNKKLSEDINLILDIPIKMTIELGRTKMTIRDLLLLKRDSIVTL 87 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + E+ + + Y I+I D I +++ Sbjct: 88 DGEIGEPLDILINDYLVARGEVVVMKERYGIKILDIITPEERI 130 >gi|118581838|ref|YP_903088.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM 2379] gi|118504548|gb|ABL01031.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM 2379] Length = 99 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 1/95 (1%) Query: 217 QNKSENQSEDLIDPFA-RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + +E ID + + + + K +KD++ L G V+ Sbjct: 1 MSDKPESNETEIDRKNLDFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPL 60 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K + E V + + +R+ D ++ +++ Sbjct: 61 DIFVNSKLVARGEAVVVNEKFGVRLVDIVSPNERV 95 >gi|209884355|ref|YP_002288212.1| flagellar motor switch phosphatase FliY [Oligotropha carboxidovorans OM5] gi|209872551|gb|ACI92347.1| flagellar motor switch phosphatase FliY [Oligotropha carboxidovorans OM5] Length = 119 Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 40/108 (37%), Gaps = 1/108 (0%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 +P ++ + ++ E +S + + + V + + K + D++ L Sbjct: 12 LPDLNAIEAPPLDQAAYADDEERSARIASDL-EAVFDVPVQVSAVLGRSKMDVSDLLKLG 70 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G V+ R + N + + E+ V + +T+ I ++ Sbjct: 71 PGTVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER 118 >gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2] gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2] Length = 101 Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 S SE+ + V + ++ + ++++V+ L G ++ R Sbjct: 7 ASDSGSETKVSENDRKAL-DLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLAQRATD 65 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L N K + E+ V +N+ I+IT+ + Sbjct: 66 PVGLFVNDKLVAYGEVVVVEENFGIKITEIVGGQ 99 >gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] Length = 104 Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + T+ +V+ L+ G +I NG+ + E+ K Sbjct: 21 ILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVESYVNGRILGKGEVMVYEK 80 Query: 295 NYTIRITDRINF 306 N IRI + ++ Sbjct: 81 NLAIRINEVLDS 92 >gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia acanthamoebae str. Hall's coccus] Length = 462 Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + + T+K +V L+ G ++ + L NGK + EL +G Sbjct: 393 IDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGELLSIGD 452 Query: 295 NYTIRITDR 303 +R+ + Sbjct: 453 ALGVRVLEI 461 Score = 38.9 bits (89), Expect = 0.92, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 61/226 (26%), Gaps = 34/226 (15%) Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 + F E +V + +SS + S ++ L+ LL + + Sbjct: 65 LFSDFGEPYVIREFRISSIEGPVWWVMSQQDLLFLMGFLLKNQTHPEFEADHD------- 117 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + +S L + + I + N + ++ Sbjct: 118 -FLNAFVQFLSLELIHAFKSV-----EFDHSLSIQIKDPASQPEGNSLCVDVTAKVS--- 168 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL---NVNIDTRINLK 249 P+ ++ ++S + + + +T V + Sbjct: 169 ---------PEHSVKGRLILSDQFYKEWKAHYAQANENAMYQTPNADYLEVVVHLEAGKT 219 Query: 250 KTTLKDVVTLKIGQVIPFL----HREKT--CAILSANGKEIYSCEL 289 + L +G ++ + +L+ NGK + +L Sbjct: 220 TLKAGEWKKLALGDLLILDSCSLKPGEDAGRVLLTINGKPFFRGKL 265 >gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277] gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277] Length = 118 Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V+ + + ++K ++ L++G VI L N + E+ Sbjct: 33 DELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVMVY 92 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 93 EKNLAIRINEILDSK 107 >gi|86748400|ref|YP_484896.1| flagellar motor switch protein [Rhodopseudomonas palustris HaA2] gi|86571428|gb|ABD05985.1| Flagellar motor switch FliN [Rhodopseudomonas palustris HaA2] Length = 116 Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 29/76 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K + +++ L G V+ R + N + + E+ V Sbjct: 40 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLV 99 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I ++ Sbjct: 100 EDKLGVTMTEIIKAER 115 >gi|115522993|ref|YP_779904.1| flagellar motor switch protein [Rhodopseudomonas palustris BisA53] gi|115516940|gb|ABJ04924.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] Length = 116 Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 29/76 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K + +++ L G V+ + + N + I E+ V Sbjct: 40 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLIARGEVVLV 99 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I ++ Sbjct: 100 EDKLGVTMTEIIAAER 115 >gi|92116306|ref|YP_576035.1| flagellar motor switch protein [Nitrobacter hamburgensis X14] gi|91799200|gb|ABE61575.1| Flagellar motor switch FliN [Nitrobacter hamburgensis X14] Length = 116 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 28/76 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K + ++ L G V+ R + N + + E+ V Sbjct: 40 EAVFDVPVQVSAVLGRSKMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLV 99 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I ++ Sbjct: 100 EDKLGVTMTEIIKAEK 115 >gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 414] gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 414] Length = 102 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 18 EDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 78 EKNLAIRINEILDSK 92 >gi|23015636|ref|ZP_00055406.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magnetotacticum MS-1] Length = 108 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 1/108 (0%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 +P L Y + V + + + ++ L Sbjct: 1 MPDFELNDFKPDGEEQGRGDVPDMPRSARDL-EAVYDIPVQVSAVLGKATMQVNQLLKLG 59 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G V+ + + N + + E+ V + +T+ I D+ Sbjct: 60 RGAVVELDRKVGEAIDIYVNNRLVARGEVVVVEDRLGVTMTEIIKTDR 107 >gi|295690737|ref|YP_003594430.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756] gi|295432640|gb|ADG11812.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756] Length = 110 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + VNI + ++ ++ L G ++ + + N + + E+ V + Sbjct: 35 VFDVPVNISAVLGRAHMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94 Query: 295 NYTIRITDRINFDQ 308 + +T+ I Sbjct: 95 RLGVTMTEIIKDGD 108 >gi|16125160|ref|NP_419724.1| flagellar motor switch protein [Caulobacter crescentus CB15] gi|221233890|ref|YP_002516326.1| flagellar motor switch protein [Caulobacter crescentus NA1000] gi|462113|sp|Q03593|FLIN_CAUCR RecName: Full=Flagellar motor switch protein FliN gi|144250|gb|AAA66328.1| flagellar switch protein [Caulobacter crescentus CB15] gi|13422174|gb|AAK22892.1| flagellar motor switch protein FliN [Caulobacter crescentus CB15] gi|220963062|gb|ACL94418.1| flagellar motor switch protein FliN [Caulobacter crescentus NA1000] Length = 110 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + VNI + ++ ++ L G ++ + + N + + E+ V + Sbjct: 35 VFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94 Query: 295 NYTIRITDRINFDQ 308 + +T+ I Sbjct: 95 RLGVTMTEIIKDGD 108 >gi|39934342|ref|NP_946618.1| flagellar motor switch protein [Rhodopseudomonas palustris CGA009] gi|192289870|ref|YP_001990475.1| flagellar motor switch protein [Rhodopseudomonas palustris TIE-1] gi|316935485|ref|YP_004110467.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris DX-1] gi|39648190|emb|CAE26710.1| putative flagellar motor switch protein [Rhodopseudomonas palustris CGA009] gi|192283619|gb|ACE99999.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris TIE-1] gi|315603199|gb|ADU45734.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris DX-1] Length = 115 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 28/75 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K + +++ L G V+ R + N + + E+ V Sbjct: 40 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLV 99 Query: 293 GKNYTIRITDRINFD 307 + +T+ I D Sbjct: 100 EDKLGVTMTEIIKAD 114 >gi|269967238|ref|ZP_06181302.1| type III secretion protein [Vibrio alginolyticus 40B] gi|269828094|gb|EEZ82364.1| type III secretion protein [Vibrio alginolyticus 40B] Length = 322 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K N ++ QL V + I + TL+ + L+ G V L Sbjct: 229 EKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKLVTL 288 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ANGK I CEL V ++ +R+ + Q+ Sbjct: 289 RANGKIIGECELVNVNEHLGVRVVELFGGTQE 320 Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR--EKTCAILSANGKEIY 285 + L V + + TL + +L++G VI F K AI + + ++ Sbjct: 159 SAALQARHLALPVWLS--LGRTHLTLSEFNSLELGDVIFFDDGYIAKQQAIFQVSNQNLW 216 Query: 286 SCEL 289 C+L Sbjct: 217 RCQL 220 >gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus hydrogenoformans Z-2901] gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus hydrogenoformans Z-2901] Length = 124 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I R+ + T++ ++ LK G V+ L +G+ E+ + + Sbjct: 43 LNNIKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINE 102 Query: 295 NYTIRITDRINFD 307 Y +RIT + D Sbjct: 103 MYGVRITGYSDED 115 >gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC BAA-430] gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC BAA-430] Length = 119 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K L +++ + G +I + NG+ I E+ K Sbjct: 33 LLDMEVVFRSELGSTKIPLSEILQFEKGSIIDLQKPAGESVEIFINGRIIGKGEVMVYEK 92 Query: 295 NYTIRITDRINFD 307 N IR+ + ++ + Sbjct: 93 NLAIRVNEILDSN 105 >gi|288960027|ref|YP_003450367.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] gi|288912335|dbj|BAI73823.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] Length = 105 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 27/76 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 Y + V I + + ++ L G V+ + + N + + E+ V Sbjct: 29 EAVYDIPVQISAVLGKSTMQVAQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 88 Query: 293 GKNYTIRITDRINFDQ 308 I +T+ I D+ Sbjct: 89 EDRLGITMTEIIKSDR 104 >gi|56695927|ref|YP_166278.1| hypothetical protein SPO1026 [Ruegeria pomeroyi DSS-3] gi|56677664|gb|AAV94330.1| hypothetical protein SPO1026 [Ruegeria pomeroyi DSS-3] Length = 388 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 23/257 (8%), Positives = 72/257 (28%), Gaps = 17/257 (6%) Query: 61 SYTSCQSGK--FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 S + + + E+ ++ S + V +L+ Sbjct: 51 SVIGATQARRELDELGRAVAEDRLYLMLSGPE-GALGAACMDRACVTAILQQQTMGQVVA 109 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN--LEDFYDIDYLKKNTNRL 176 + R+ + + + I + + + E + + L Sbjct: 110 GGFVE-RAFTGTDAAMVAPLIDALLPRARDMVDQPLDRVCLTGYEFCARAESRRALLLLL 168 Query: 177 SNEFVTTINMNMTI--ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 + ++ I LI+P ++ + Sbjct: 169 EYDRYRVFDLTAEIAGGKAQGQITLILPDRPEAALEGAEGAAAPQGL--------HLDAA 220 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVG 293 + ++D I+ + L ++ G ++P + I++ G+++ LG+ Sbjct: 221 FGVVRADLDAVISRIRLPLAAFAGMQPGDLLPLVGLKLDRTEIVTIEGRQVALARLGQCR 280 Query: 294 KNYTIRITDRINFDQKS 310 +R+ +++ ++ Sbjct: 281 GMRAVRLNEKLPDPERI 297 >gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1] gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1] Length = 84 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + ++ + +++V+ L G V+ L N + + E+ V Sbjct: 9 VLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVVVED 68 Query: 295 NYTIRITDRINFDQ 308 N+ I+IT+ + ++ Sbjct: 69 NFGIKITELVGSEK 82 >gi|34498456|ref|NP_902671.1| hypothetical protein CV_3001 [Chromobacterium violaceum ATCC 12472] gi|34104311|gb|AAQ60670.1| hypothetical protein CV_3001 [Chromobacterium violaceum ATCC 12472] Length = 280 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 68/200 (34%), Gaps = 14/200 (7%) Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158 L++ +L+ GA + E++L + ++ L + I Sbjct: 88 FDRGLLLGILDYRFGARAGASDGELPAE-TETERRLGRTLAERLLPRLARAIH------- 139 Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 L D + ++ + ++++ + + + L +LS Q Sbjct: 140 QLSRASLPDASRPQPLGYPDQAAWQLEVDLSDGDAKLGTLRLRLNAAAFDALLQNLSGQR 199 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + D FA + + +D R+ ++ L V+ L+ G V+P + A + Sbjct: 200 PRLLGNPD-SANFAERVR---IRLDARLLEQELPLGAVLDLRPGSVLPVAMQPH--AEVC 253 Query: 279 ANGKEIYSCELGRVGKNYTI 298 A G ++ ++ + Sbjct: 254 AQGSPLFRAQVVERQGKLCL 273 >gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] Length = 105 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 +SL++ K + + + V I + K + + + G VIP E Sbjct: 5 VSLTAYGKGHAPDSNSDAHSMSQLGAVQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAAE 64 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + AN I E+ G + ITD Sbjct: 65 HDEVWILANNHPIARGEIIIQGDRVAVSITD 95 >gi|319403949|emb|CBI77537.1| Flagellar motor switch protein fliY [Bartonella rochalimae ATCC BAA-1498] Length = 170 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + ++ L G VI + + NG+ I E+ + Sbjct: 94 ELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVL 153 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I+ Sbjct: 154 EDDPSRFGVSLTEIIDK 170 >gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21] gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21] Length = 96 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++V + + K L+DV+ L VI + NGK I E+ G Sbjct: 11 IQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGEVIAQGN 70 Query: 295 NYTIRITDRIN 305 + IR+ + + Sbjct: 71 RFAIRVLEIVG 81 >gi|116328051|ref|YP_797771.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331496|ref|YP_801214.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120795|gb|ABJ78838.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125185|gb|ABJ76456.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 174 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 1/108 (0%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 L + + ++ + + +N+ + + +KDV L G Sbjct: 68 ISAALGPSPTPSAPRSATRQSASTQSTNL-NLLMDVNLALTVELGRTNMFIKDVNGLNEG 126 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 V+ + ANG + +L + Y I+IT+ ++ ++ Sbjct: 127 IVVELDKNVGEDLDILANGHLVGRGKLVAMDDFYGIQITEIVDQSRRL 174 >gi|254228802|ref|ZP_04922225.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262396479|ref|YP_003288332.1| putative flagellar motor switch protein [Vibrio sp. Ex25] gi|151938749|gb|EDN57584.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262340073|gb|ACY53867.1| putative flagellar motor switch protein [Vibrio sp. Ex25] Length = 272 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 88/301 (29%), Gaps = 42/301 (13%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70 P+ I L + I + L L + + V+ S TS +F Sbjct: 8 PISDIQLLDVELLGKPIHIIREKLEGLISESCSSLTIELQNWLSTSKVEASLTSVDLHRF 67 Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 + I + + F+ ++ +I L + GAS E L+ Sbjct: 68 TPIKMDKDQTSTYQHQE----GGMVFVHGDSHTLIKLADRFYGASTERSATT----LTAS 119 Query: 131 EKKLAKRTIAQISAVLN--QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 + +L +R I L + + + +N+ Sbjct: 120 DLRLQERISRIIIGWLAPGEMW-------------------EMGEYEAPRGIGINVQLNI 160 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 ++ S L + + DL PF R V ++ ++ Sbjct: 161 AFDDHQGSIHLKLDSHLIQTLIEQL------ELQPDTDLYQPFCRSLETTPVRLNVVLSK 214 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 KK L DVV L+ ++P +S + +++ + + N D+ Sbjct: 215 KKMPLSDVVGLQPNDILPIELL--NTVPVSIGNQSLFTGRIAEQDGQLVL----IFNPDK 268 Query: 309 K 309 + Sbjct: 269 E 269 >gi|144901008|emb|CAM77872.1| Surface presentation of antigens (SPOA) protein [Magnetospirillum gryphiswaldense MSR-1] Length = 90 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 26/78 (33%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 Y +NV + + ++ L G V+ + L N K I E+ Sbjct: 13 QEAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARAEVVV 72 Query: 292 VGKNYTIRITDRINFDQK 309 V + + +T+ + Sbjct: 73 VEDHLAVTVTEVLKRAAD 90 >gi|319898626|ref|YP_004158719.1| flagellar motor switch protein fliY [Bartonella clarridgeiae 73] gi|319402590|emb|CBI76135.1| Flagellar motor switch protein fliY [Bartonella clarridgeiae 73] Length = 171 Score = 68.1 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 3/78 (3%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V + + + ++ L G VI + + NG+ I E+ Sbjct: 94 KELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIV 153 Query: 292 VGK---NYTIRITDRINF 306 + + I +T+ I+ Sbjct: 154 LEDDPSRFGISLTEIIDK 171 >gi|288960009|ref|YP_003450349.1| flagellar motor switch protein [Azospirillum sp. B510] gi|288912317|dbj|BAI73805.1| flagellar motor switch protein [Azospirillum sp. B510] Length = 100 Score = 68.1 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%) Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + D + V I I ++D++ L G V+ K + G Sbjct: 10 ASDPNDGDASSFAIGDAPVEIKVVIGTAMLRVRDLLKLGRGAVVELDRHLKDPTDVYVEG 69 Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQK 309 + E+ + + +TD I ++ Sbjct: 70 VLVARGEVAIIDDKIGVTLTDFIKSSRE 97 >gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1] gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1] Length = 127 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + K L +++ LK G V+ E + NG + E+ Sbjct: 53 LKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIVSKNG 112 Query: 295 NYTIRITDRINF 306 Y +R+ I Sbjct: 113 QYGVRLLSIIKK 124 >gi|83309599|ref|YP_419863.1| flagellar motor switch protein [Magnetospirillum magneticum AMB-1] gi|82944440|dbj|BAE49304.1| Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magneticum AMB-1] Length = 108 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 1/108 (0%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 +P L Y + V + + + ++ L Sbjct: 1 MPDFELNDFKPEVEEQGRGDVPDMPRSARDL-EAVYDIPVQVSAVLGKATMQVNQLLKLG 59 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G V+ + + N + + E+ V + +T+ I D+ Sbjct: 60 RGAVVELDRKVGEAIDIYVNNRLVARGEVVVVEDRLGVTMTEIIKTDR 107 >gi|126176170|ref|YP_001052319.1| hypothetical protein Sbal_3982 [Shewanella baltica OS155] gi|125999375|gb|ABN63450.1| conserved hypothetical protein [Shewanella baltica OS155] Length = 293 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 21/291 (7%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 R + +K ++ L + L + + + + + Sbjct: 19 RPIMLVQEKLARTRLLQQL-EQLHRPLIDAINNILSPLLRQGHPAVSGSTLTEPRTPVVP 77 Query: 80 NFVFSQASLSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 ++ L + + + L N G + + R+ S E +LAK+ Sbjct: 78 EHCYAWFVLKHQQNTLGYWRIDRCTLDQLASNYYGNTSTPLSSPL-RNPSQSEFRLAKKL 136 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + + L PN + ++ + + N ++ + Sbjct: 137 LLSVVDEL-----------PNSTIDTNTLEVELIKGHMPLTVSAVWSFNFINGSLTPPML 185 Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 + + L L+ Q K S DL A L + + + ++ + Sbjct: 186 FCLT-----EHLLGHLAEQPKKSEISADLPTKLAVWLKSLPIKMQLTLGQHSIPVQSLSQ 240 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 LK G ++P KT + ++ + ++T + +++ Sbjct: 241 LKTGDILPINLYPKTLLSI--GNTTLFHASVHSHEGQMVAKLTQDVYQNEE 289 >gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100] gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100] Length = 98 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 31/75 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++V+ + + ++++++ L++G VI L N + E+ Sbjct: 13 EDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEVMVY 72 Query: 293 GKNYTIRITDRINFD 307 KN IRI + ++ Sbjct: 73 EKNLAIRINEILDSK 87 >gi|150388449|ref|YP_001318498.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens QYMF] gi|149948311|gb|ABR46839.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens QYMF] Length = 143 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 45/131 (34%), Gaps = 1/131 (0%) Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 E + + I + + P K ++ + Q + S+ + + + Sbjct: 4 DMISQEEIDALLKGSTNISSDNDRIDEVQPSTKQSKVSVQPIQFQAFEQVSSKGVPENIS 63 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + +V+ G +I + NG+ + E+ + Sbjct: 64 T-IQDVPLSVTVELGRTVKKISEVLEFGPGTIIEVEKLVGEHVDILVNGQYVAKGEVVVI 122 Query: 293 GKNYTIRITDR 303 +NY RIT+ Sbjct: 123 DENYGTRITEI 133 >gi|85713558|ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85699462|gb|EAQ37329.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 116 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 28/76 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + + + ++ L G V+ R + N + + E+ V Sbjct: 40 EAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLV 99 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I ++ Sbjct: 100 EDKLGVTMTEIIKAEK 115 >gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum L-1] gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum L-1] Length = 112 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 28/78 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R + V + + L +V+ L G V+ + + NG I E+ V Sbjct: 28 RLLADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEVVTV 87 Query: 293 GKNYTIRITDRINFDQKS 310 Y IRI + + + Sbjct: 88 NGRYGIRIVEIAAAESRL 105 >gi|319406966|emb|CBI80603.1| Flagellar motor switch protein fliY [Bartonella sp. 1-1C] Length = 170 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + ++ L G VI + + NG+ I E+ + Sbjct: 94 ELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVL 153 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I+ Sbjct: 154 EDDPSRFGVSLTEIIDK 170 >gi|167644980|ref|YP_001682643.1| flagellar motor switch protein [Caulobacter sp. K31] gi|167347410|gb|ABZ70145.1| flagellar motor switch protein FliN [Caulobacter sp. K31] Length = 111 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + VNI + ++ ++ L G ++ + + N + + E+ V + Sbjct: 35 VFDVPVNISAVLGRAHMSVAQLLQLSAGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94 Query: 295 NYTIRITDRINFDQ 308 + +T+ I Sbjct: 95 RLGVTMTEIIKDGD 108 >gi|114797692|ref|YP_760111.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] gi|114737866|gb|ABI75991.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] Length = 89 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 7/80 (8%), Positives = 32/80 (40%) Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + + V +D + + +++++ L G+++ + + +G+ + +L Sbjct: 8 ALEKMLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLVARGKL 67 Query: 290 GRVGKNYTIRITDRINFDQK 309 + +++ I+ + Sbjct: 68 VVTDGQLGVTLSEIIDSRPE 87 >gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio acetiphilus DSM 12809] gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio acetiphilus DSM 12809] Length = 95 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 34/77 (44%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++ +ID + K +++++ + G ++ F NGK + E+ Sbjct: 8 KNEFGEVLFDIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMV 67 Query: 292 VGKNYTIRITDRINFDQ 308 + + + +RIT+ + + Sbjct: 68 LDERFAVRITEILEKED 84 >gi|75674794|ref|YP_317215.1| flagellar motor switch protein [Nitrobacter winogradskyi Nb-255] gi|74419664|gb|ABA03863.1| surface presentation of antigens (SPOA) protein [Nitrobacter winogradskyi Nb-255] Length = 116 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 28/76 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + + + ++ L G V+ R + N + + E+ V Sbjct: 40 EAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLV 99 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I ++ Sbjct: 100 EDKLGVTMTEIIKAEK 115 >gi|312883879|ref|ZP_07743596.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368337|gb|EFP95872.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 321 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + QL V + + + TL+ + +L+ G + + Sbjct: 230 ETNMNDITNNEALTDH-QQLPVELTFDVGQQTITLEQLNSLQPGFTFELNQPISSPVTMR 288 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ANGK I CEL + + +R+ + + Q+ Sbjct: 289 ANGKIIGECELVNINERLGVRVIELLGETQE 319 >gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1] gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1] Length = 107 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 29/78 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R + + + + L +++ L G V+ + + NG + E+ V Sbjct: 23 RLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAKGEVVTV 82 Query: 293 GKNYTIRITDRINFDQKS 310 + IR+ D + D + Sbjct: 83 NGKFGIRVVDIVAADARL 100 >gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179] gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC 49179] Length = 139 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + L +V+ + G VI NG+ I E+ Sbjct: 55 KGLLDMEVTFMAELGSTSIPLGEVLRFERGSVIDLQKPAGESVDTFVNGRVIGKGEVMVY 114 Query: 293 GKNYTIRITDRINFD 307 KN IR+ + ++ + Sbjct: 115 EKNLAIRLNEVLDSN 129 >gi|197104325|ref|YP_002129702.1| flagellar motor switch protein FliN [Phenylobacterium zucineum HLK1] gi|196477745|gb|ACG77273.1| flagellar motor switch protein FliN [Phenylobacterium zucineum HLK1] Length = 111 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + V+I + ++ ++ L G V+ + + N + + E+ V + Sbjct: 35 VFDVPVSISAVLGRSTLSVAQLLQLAQGSVLELDRKVGEAIDIYVNNRLVARGEVVIVDE 94 Query: 295 NYTIRITDRINFDQ 308 + +T+ I Sbjct: 95 RLGVTMTEIIKDGD 108 >gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 178 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 +N+ + + +KDV L G V+ + ANG+ + +L + Sbjct: 101 NLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAM 160 Query: 293 GKNYTIRITDRINFDQKS 310 Y I+IT+ ++ ++ Sbjct: 161 DDFYGIQITEIVDQSRRL 178 >gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] Length = 318 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 39/303 (12%), Positives = 90/303 (29%), Gaps = 48/303 (15%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L + V + + F + ++ + ++ Sbjct: 24 LASLLGRNARAAVT-ELGETDRETLTEYLPHF-NVVIEAERTAEGLRVPQLYVFDRADML 81 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEK-------KLAKRTIAQISAVLNQCISTTQESSP 158 + ++G T L +LST+++ + + + + ++ Sbjct: 82 KISNFIMGLPVNTESPLDEIALSTLKEVASQCMGAAMENLGDFLGREMGEVLTRVTAFDS 141 Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 I K + I ++ IE V S+ VL I E L + I + Q Sbjct: 142 AERILDTISLWDKVPHL------LLIRFHLEIEGVLSAEVLGIATEELQEIFGIPVMGQE 195 Query: 219 KSENQSEDLID---------------------------------PFARKTYQLNVNIDTR 245 + ++ + +K + +++ R Sbjct: 196 PAAEEAVHTEELPFRKKEKTVAFREVSFPEFKYVPLDNQVDHIGEERKKLRDITLDVSVR 255 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I ++KD++ L+ GQ++ + + A + NGK I ++ + RI + I Sbjct: 256 IGGTVCSVKDILALQKGQILTLDKQAGSPADVVVNGKLIGKSDVLVTDDKFAARIIEIIG 315 Query: 306 FDQ 308 Sbjct: 316 KRD 318 >gi|163784306|ref|ZP_02179216.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880424|gb|EDP74018.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1] Length = 193 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 34/99 (34%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + E++ D + + I + + L+D++ L V+ Sbjct: 87 LQEQKTQGETPVFEEVKDEKLELLMDIPLEISVEVGGRDILLEDILKLNPNTVLELDKYI 146 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK + EL N+ ++IT + ++ Sbjct: 147 NEPVDIKINGKLVAKGELYTAENNFGVKITSIVTVQERM 185 >gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT 98-5491] gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT 98-5491] Length = 119 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 3/100 (3%) Query: 211 LISLSSQNKSENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 Q + ++ + V + K L +++ + G +I Sbjct: 6 FTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVAFHAELGSAKIPLLEILRFEKGSIIDL 65 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + NG+ + E+ KN IR+ + ++ + Sbjct: 66 QKPAGESVEIYINGRIVGKGEVMVYEKNLAIRVNEILDSN 105 >gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein [uncultured bacterium] Length = 117 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 Y++ V + + + ++ L G V+ ++AN + I E+ Sbjct: 40 MEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIARGEVVV 99 Query: 292 VGKNYTIRITDRINFD 307 V I+ITD I + Sbjct: 100 VEDRLAIQITDIIRSN 115 >gi|255030382|ref|ZP_05302333.1| flagellar motor switch protein FliM [Listeria monocytogenes LO28] Length = 199 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 45/155 (29%), Gaps = 6/155 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I +I + E L G + + R LS E+ K + + Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 L + SP + + N+ Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDM 199 >gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT 1] gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT 1] Length = 141 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + + + DVV+L G ++ F ++ NGK I E+ V Sbjct: 60 ERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIARGEVVVV 119 Query: 293 GKNYTIRITDRINFDQKS 310 G+++ +RI+ I Q+ Sbjct: 120 GEHFGVRISQIITPQQRI 137 >gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] Length = 293 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 91/285 (31%), Gaps = 24/285 (8%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ--ASLSSWSSNF 95 + L ++ + T C++ + + V + SS + Sbjct: 1 MASDLSNILRDELSNTLEQLLS-QPTKCENVEKADFSKVDSSQCVEIDVKFEFKNISSTW 59 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL-NQCISTTQ 154 + +LG + + + + + + + IS + Q Sbjct: 60 NFFIPTSSAARFEYLMLGGTGDLKEHIDDEITDAINE-IVSNICGSISTSVNAQGFPDIS 118 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV-LIIPQETLLKTTLIS 213 + I+ K N N F +N++ I V SF +I+P + + Sbjct: 119 GLKHEILGSKIIECNGKENN--DNTFSFKLNLDNKISEVIISFDDVILPFLSEITGKEAD 176 Query: 214 LSSQNKSENQ---------------SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 +S N+S +Q S++ + + + + R+ K LKD++ Sbjct: 177 AASNNESSSQGFPSLPTSNGIDSLLSDESSKNLK-LLFDIKLKLSVRLGTKLFLLKDILK 235 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 IG++I + NG +I E V + ++I + Sbjct: 236 WDIGEIIELEQMVNEPLDILVNGIKIGEGEAVIVEGKFGLKIKNI 280 >gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum JL354] Length = 118 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++V + + K L++++ L ++ + NG+ I E+ G Sbjct: 11 IQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEVVAQGN 70 Query: 295 NYTIRITD 302 + IRI + Sbjct: 71 RFAIRILE 78 >gi|319405390|emb|CBI79009.1| Flagellar motor switch protein fliY [Bartonella sp. AR 15-3] Length = 170 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + ++ L G VI + + NG+ I E+ + Sbjct: 94 ELIMSIPVEVQVVLGSTTMPVSTLMDLGRGAVITLDKQIGDPIDIVVNGRVIARGEVIVL 153 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I+ Sbjct: 154 EDDPSRFGVSLTEIIDK 170 >gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum UT26S] gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum UT26S] Length = 112 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 28/78 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R + V + + L +V+ L G V+ + + NG I E+ V Sbjct: 28 RLLADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEVVTV 87 Query: 293 GKNYTIRITDRINFDQKS 310 Y IRI + + + Sbjct: 88 NGRYGIRIVEIAAAESRL 105 >gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740] gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes] Length = 117 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + K TL +++ + G +I NG+ I E+ K Sbjct: 34 LLDMEVIFTAELGATKITLAEILKFEKGSIIDLQKPAGESVETFVNGRIIGKGEVMVYEK 93 Query: 295 NYTIRITDRINFD 307 N IRI + ++ + Sbjct: 94 NLAIRINEILDSN 106 >gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36] gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36] Length = 122 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + +++ + K + D++ L G VI L NG+ + + E+ V Sbjct: 45 HNIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLATAEVVVVNGK 104 Query: 296 YTIRITDRIN 305 Y +++ D ++ Sbjct: 105 YGVKLIDVVD 114 >gi|114777575|ref|ZP_01452556.1| flagellar protein [Mariprofundus ferrooxydans PV-1] gi|114552046|gb|EAU54563.1| flagellar protein [Mariprofundus ferrooxydans PV-1] Length = 98 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 29/94 (30%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + +E + + I + K L + L G VI Sbjct: 1 MSDTATATEHPQTANLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQ 60 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + ANG E+ G +RIT+ + + Sbjct: 61 ILANGSIFAKGEVVSTGDKLGVRITEIVPASARI 94 >gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1] gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1] Length = 102 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ + V + + + LKDV+ + G V+P ++ANG+ + E+ Sbjct: 9 KRFGDVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIAQ 68 Query: 293 GKNYTIRITDRIN 305 + +RI + + Sbjct: 69 DGRFALRIVELVG 81 >gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] Length = 309 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 34/312 (10%), Positives = 98/312 (31%), Gaps = 54/312 (17%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGK---FSHIIHSFKENFVFSQASLSSWSSN-- 94 +++ F K+ +V +C+ GK + + + ++S+ Sbjct: 3 EQFRRMAD--FTAKLKDEV---LAACEVGKDEASEALSRALGNPMTLAVGEAGAYSAAVA 57 Query: 95 -------FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + I L+ G + + S +A ++ L Sbjct: 58 PEEAGLAIVLKVDLEAAIVLIPASSGLLPDWYAEPDATGESK---------LATLAQELG 108 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + + + + +++ +T EN +S +L+ P Sbjct: 109 MLLLPEEFMPLDFKAGKIENIRAGLKKAGCTDAAACVSLPLTGENGSSEALLVWPAPQAD 168 Query: 208 KTTLISLSSQNKSENQS----------------------------EDLIDPFARKTYQLN 239 + + Q ++ + + +A+ ++ Sbjct: 169 AIFKSTAAPQQPTDTPKNDPNLAVEVKPAPAPTPATPPPRTEPVGQRNLPHYAKSLLKIA 228 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + ++ + KK ++++ L IG +I F + L I E ++G + +R Sbjct: 229 IEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGDKFGMR 288 Query: 300 ITDRINFDQKSL 311 +T+ + +++ + Sbjct: 289 VTNVLLPEERFI 300 >gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] Length = 178 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 +N+ + + +KDV L G V+ + ANG+ + +L + Sbjct: 101 NLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAM 160 Query: 293 GKNYTIRITDRINFDQKS 310 Y I+IT+ ++ ++ Sbjct: 161 DDFYGIQITEIVDQSRRL 178 >gi|238762374|ref|ZP_04623345.1| Flagellar motor switch protein [Yersinia kristensenii ATCC 33638] gi|238699359|gb|EEP92105.1| Flagellar motor switch protein [Yersinia kristensenii ATCC 33638] Length = 291 Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 71/206 (34%), Gaps = 16/206 (7%) Query: 93 SNFFIGCSNNLVITLLENLLGASHE--TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 N L++ +L + G + E T+ L N + E++L + +I+ ++ Sbjct: 85 GNIAFDIDRTLLLNILNDYYGLTKEKSTVSVLDNTPKTQTEERLKNKLSIEIADLILN-- 142 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 P + I + ++ + F L+I + + Sbjct: 143 ------QPVFGEPLVIKNNNSTPIVS---WSYQMDFLLKDYENVG-FTLLIDTPNVDRLL 192 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + + F + QL + + ++++ TL D++ +K G +IP Sbjct: 193 NTLHTGIKEEKKTQTLSVTQFNQLVSQLPIQLTSQLSCSDLTLFDLMAIKEGDIIPTSLP 252 Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296 E+ + + ++S + Sbjct: 253 ERFP--VFIGKQPLFSAVVTESRGKL 276 >gi|56384263|gb|AAV85781.1| FliN [Azospirillum brasilense] Length = 109 Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 27/76 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 Y + V I + + ++ L G V+ + + N + + E+ V Sbjct: 33 EAVYDIPVQISAVLGKSTMQVSQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 92 Query: 293 GKNYTIRITDRINFDQ 308 I +T+ I D+ Sbjct: 93 EDRLGITMTEIIKSDR 108 >gi|269960159|ref|ZP_06174535.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835130|gb|EEZ89213.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 272 Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 50/305 (16%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70 P+ I L + I + SL L + + + ++ + + + +F Sbjct: 8 PISDIKLLDVELLGKPIHIIREKLESLISESCSSLTNELQNWLSSNKIEANLVAVELHRF 67 Query: 71 SHIIHSFKENFVF----SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 S + + +I +I L + GA+ E Sbjct: 68 S--------PTLLDKDQTSTYQHQDGGMVYIHGDAQALIKLADRFYGAATERTSTS---- 115 Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 L+ + +L +R I L + + Sbjct: 116 LTASDLRLQERISRIIINWLAPQEMW-------------------QPCEYETPRGIGLHA 156 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +++ E+ + L + + + + DL PF R V ++ Sbjct: 157 ELSIAFEDFQGAIHLKLDSTMIQTLIEQL------ALHNDADLYQPFCRSLESTPVRLNV 210 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ K L DVV L+ ++P +S + ++S + + Sbjct: 211 VLSKKTMALSDVVGLQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IF 264 Query: 305 NFDQK 309 N D++ Sbjct: 265 NPDKE 269 >gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 172 Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 31/74 (41%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + + +KDV+ L G V+ + ANGK + +L + Y Sbjct: 93 DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDDYY 152 Query: 297 TIRITDRINFDQKS 310 ++IT ++ ++ Sbjct: 153 GVQITQIVDPMERL 166 >gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 121 Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ V + + + +L +++ G VI + NG + E+ + + Sbjct: 44 KKIPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINEK 103 Query: 296 YTIRITDRINFDQKSLKN 313 Y +R+ D ++ ++ N Sbjct: 104 YGLRLIDVVDSPLNTMDN 121 >gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256] gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256] Length = 111 Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 +++ + + TL +++ L G VI + ANG I E+ V Sbjct: 27 DLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAATDLLDIYANGTLIAKGEIVSV 86 Query: 293 GKNYTIRITDRINF 306 Y I++ + + Sbjct: 87 DGRYGIQVAEVVAP 100 >gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM 43160] gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM 43160] Length = 249 Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 33/72 (45%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + I + T+ ++++L G+V+ A L NG I E+ V Sbjct: 165 DLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVVVV 224 Query: 293 GKNYTIRITDRI 304 +++ +RI++ + Sbjct: 225 DEDFGLRISEIV 236 >gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp. indica ATCC 9039] gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp. indica ATCC 9039] Length = 109 Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 L+ + ++DL + ++ V + + + +++ L G VIP HR Sbjct: 9 LNMDHGETTTAKDLNNRNLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVIPLDHRVGE 68 Query: 274 CAILSANGKEIYSCELGRV---GKNYTIRITDRINF 306 + NG+ I E+ V + + +T+ + Sbjct: 69 PVDIVVNGRVIARGEVVVVEDDNSRFGVSLTEIVGP 104 >gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] Length = 112 Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + ++ T+K+++ L G V+ F L NG + E+ Sbjct: 30 DLLMDVPVYLTVEVGRRRMTIKELLALASGSVVTFDRSVTEPMDLMVNGTLVARGEVVSA 89 Query: 293 GKNYTIRITDRINFDQKS 310 + +R+ D ++ ++ Sbjct: 90 EGQFGLRLVDVVSPKERL 107 >gi|226225726|ref|YP_002759832.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27] gi|226088917|dbj|BAH37362.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27] Length = 141 Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 28/70 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + + + T+++++ L G VI + + E+ +G+ Sbjct: 60 LLDLTLPVSIELGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVVLGE 119 Query: 295 NYTIRITDRI 304 ++ +RIT + Sbjct: 120 HFGVRITRVL 129 >gi|260767962|ref|ZP_05876896.1| putative flagellar motor switch protein [Vibrio furnissii CIP 102972] gi|260615992|gb|EEX41177.1| putative flagellar motor switch protein [Vibrio furnissii CIP 102972] Length = 256 Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 76/221 (34%), Gaps = 33/221 (14%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 F+ ++++ITL + GA+ + L++ +++L +R ++ Sbjct: 69 GGALFVRLDSHMLITLADRFYGANMARSQSV----LTSSDRRLQERIGKVVAH-----WV 119 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 QE + + + N +++ + LI+ + + Sbjct: 120 APQEMW------------QLHEGDIGNGIGLKAELSVRYADQHGVLTLIMESQLVQTLID 167 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + +L F R V ++ ++ K L DV+ L ++P Sbjct: 168 QL------DLQPNTELNAQFRRSLQHTPVRLNVLLSKKTMPLSDVLRLTPNDILPIDLL- 220 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + +S + ++S + + +N D++SL+ Sbjct: 221 -STVPVSIGHERLFSGRIAEQEGQLVL----ILNQDKESLR 256 >gi|121602197|ref|YP_989410.1| flagellar motor switch protein fliY [Bartonella bacilliformis KC583] gi|120614374|gb|ABM44975.1| flagellar motor switch protein fliY [Bartonella bacilliformis KC583] Length = 139 Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ++ + + V + + + +++ L G VI + + Sbjct: 48 SSKTQENTNDASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDI 107 Query: 278 SANGKEIYSCELGRVGK---NYTIRITDRINF 306 NG+ I E+ + + + +T+ I+ Sbjct: 108 VVNGRIIARGEVIVLEDDSSRFGVSLTEVIDK 139 >gi|269105050|ref|ZP_06157745.1| type III secretion inner membrane protein YscQ [Photobacterium damselae subsp. damselae CIP 102761] gi|268160685|gb|EEZ39183.1| type III secretion inner membrane protein YscQ [Photobacterium damselae subsp. damselae CIP 102761] Length = 321 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q K N ++ QL + + + + TL+ + L+ G Sbjct: 227 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISDPVT 286 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + ANGK I CEL + + +R+ + Q+ Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQE 319 >gi|227873537|ref|ZP_03991782.1| possible flagellar motor switch protein FliY [Oribacterium sinus F0268] gi|227840627|gb|EEJ51012.1| possible flagellar motor switch protein FliY [Oribacterium sinus F0268] Length = 472 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 18/121 (14%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF------------------ARKTYQLNVNIDTRI 246 L I ++++ LI P ++ + I I Sbjct: 346 MLELIRDIQGGKNKEAKSSEPSLIKPLNSREFENEGGGAGENPDNREMLMKVPLEISVEI 405 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + +KD++ G ++ A L NG+ I ++ V +N+ IRIT+ + Sbjct: 406 GRTRKLVKDILDFTQGSLVVLDKMAGEQADLYVNGECIAKGDIVVVEENFGIRITEILKK 465 Query: 307 D 307 D Sbjct: 466 D 466 >gi|95929862|ref|ZP_01312603.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684] gi|95134158|gb|EAT15816.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684] Length = 107 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 43/105 (40%), Gaps = 2/105 (1%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + +T + + +E+ EDL + + +++ + K +++++ + G VI Sbjct: 1 MEETEATPAPAPDAAESHDEDLKNL--ELLLDIPLDVSVEVGRTKILVRELLQMDEGYVI 58 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + I E+ V +R+TD I+ ++ Sbjct: 59 ELGKNANEPLDVYVNSRLIARGEVVLVDDKLGLRLTDVISPAERI 103 >gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4] gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4] Length = 112 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 29/76 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V I + K + D++ L G V+ + + N + + E+ V Sbjct: 37 EAVFDVPVRISAVLGSSKMHVSDLLKLASGTVLELDRKVGEAIDIYVNDRLVARGEVVLV 96 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I D+ Sbjct: 97 EDKLGVTMTEIIKTDR 112 >gi|153831629|ref|ZP_01984296.1| putative flagellar motor switch protein [Vibrio harveyi HY01] gi|148872139|gb|EDL70956.1| putative flagellar motor switch protein [Vibrio harveyi HY01] Length = 272 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 50/305 (16%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70 P+ I L + I + SL L + + + ++ + + + +F Sbjct: 8 PISDIKLLDVELLGKPIHIIREKLESLISESCSGLTNELQNWLSTNKIEANLVAVELHRF 67 Query: 71 SHIIHSFKENFVF----SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 S + + +I +I L + GA+ E Sbjct: 68 S--------PTLLDKDQTSTYQHQDGGMVYIHGDAQALIKLADRFYGAATERTSTS---- 115 Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 L+ + +L +R I L + + Sbjct: 116 LTASDLRLQERISRIIINWLAPQEMW-------------------QTCEYETPRGIGLHA 156 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +++ E+ + L + + + + DL PF R V ++ Sbjct: 157 ELSIAFEDFQGAIHLKLDSTMIQTLIEQL------ALHNDTDLYQPFCRSLESTPVRLNV 210 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ K L DVV L+ ++P +S + ++S + + Sbjct: 211 VLSKKTMALSDVVRLQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IF 264 Query: 305 NFDQK 309 N D++ Sbjct: 265 NPDKE 269 >gi|269967104|ref|ZP_06181171.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269828241|gb|EEZ82508.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 218 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 37/251 (14%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 + S TS +F+ + ++ + FI + + +I L + GAS E Sbjct: 2 EASLTSVDLHRFTSVEMDKEQTSTYQHQE----GGMVFIHGNPHTLIKLADRFYGASAER 57 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 L+ + +L +R I E E Sbjct: 58 SAAT----LTASDLRLQERISRIIIG-----WLAPGEMWDTGEYE------------TPR 96 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 + +N+ ++ S L + + DL PF R Sbjct: 97 GIGINVQLNIAFDDHQGSIHLKLDGHLIQTLIEQL------ELQPDTDLFQPFCRSLETT 150 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V ++ ++ KK L DVV L+ ++P +S + +++ + + Sbjct: 151 PVRLNVVLSKKKMPLSDVVGLQPNDILPIELL--NTVPVSIGNQSLFTGRIAEQDGQLVL 208 Query: 299 RITDRINFDQK 309 N D++ Sbjct: 209 ----IFNPDKE 215 >gi|114798836|ref|YP_758975.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] gi|114739010|gb|ABI77135.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] Length = 99 Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + + + + R Y + V + I K+ ++++++ L+ VI + L Sbjct: 5 DGQDRRDPSGRNSYRRSIYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDL 64 Query: 278 SANGKEIYSCELGRV-GKNYTIRITDRINFDQK 309 + K I EL ++I + I + Sbjct: 65 FIDDKLIAKGELVETDDGQIAVKIVEIIEKAIE 97 >gi|162147463|ref|YP_001601924.1| flagellar motor switch protein fliN [Gluconacetobacter diazotrophicus PAl 5] gi|209545572|ref|YP_002277801.1| flagellar motor switch protein FliN [Gluconacetobacter diazotrophicus PAl 5] gi|161786040|emb|CAP55622.1| putative flagellar motor switch protein fliN [Gluconacetobacter diazotrophicus PAl 5] gi|209533249|gb|ACI53186.1| flagellar motor switch protein FliN [Gluconacetobacter diazotrophicus PAl 5] Length = 125 Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 Y + V I I + ++ L G V+ + + AN + I E+ Sbjct: 45 MEAVYDIPVKITAVIGSATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVV 104 Query: 292 VGKN-YTIRITDRINF 306 V N + +T+ I+ Sbjct: 105 VDDNHIGVTMTEIISS 120 >gi|268043519|gb|ACY92085.1| flagellar motor switch protein [Allochromatium vinosum DSM 180] Length = 120 Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 6/92 (6%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 P R+ + + ++L + +IS Sbjct: 34 TDGQARPYDFATQDRIVRG------RMPTLDMINERFARYLRVHLFNLLRRSSEISVIGA 87 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 + KFS HS + + Sbjct: 88 RVTKFSEYRHSLYVPTSLNLVRVYPLHGIGVA 119 >gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] Length = 119 Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%) Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 + ++ V + + +L D+V + G V+ + NG I E Sbjct: 35 RDMSHFLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAE 94 Query: 289 LGRVGKNYTIRITDRINFDQKSL 311 + G NY +R+ + + D +L Sbjct: 95 VVVAGDNYGLRVVELNDLDLDTL 117 >gi|319409197|emb|CBI82841.1| Flagellar motor switch protein fliY [Bartonella schoenbuchensis R1] Length = 165 Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + +++ L G VI + + NG+ I E+ + Sbjct: 89 ELIMSIPVEVQIVLGSTTMPVANLMDLGRGSVITLDKQIGDPIDIIVNGRIIARGEVIVL 148 Query: 293 GK---NYTIRITDRINF 306 + + +T+ + Sbjct: 149 EDDPSRFGVSLTEVMGK 165 >gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] Length = 118 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +QL V++ + + +L ++ + G V+ + NG + E+ V Sbjct: 41 HQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 100 Query: 296 YTIRITDR 303 Y +R+ + Sbjct: 101 YGVRLLEV 108 >gi|254470176|ref|ZP_05083580.1| flagellar motor switch protein [Pseudovibrio sp. JE062] gi|211960487|gb|EEA95683.1| flagellar motor switch protein [Pseudovibrio sp. JE062] Length = 111 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 29/76 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K + D++ L G V+ + + N + I E+ V Sbjct: 36 EAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVNNRLIARGEVVLV 95 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I D+ Sbjct: 96 EDKLGVTMTEIIKADK 111 >gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01] gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01] Length = 123 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ VN+ + + TLK+++ + G VI + NG E+ + NY Sbjct: 47 KIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNY 106 Query: 297 TIRITD 302 +RI + Sbjct: 107 GLRIVE 112 >gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] Length = 115 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +QL V + + + +L ++ + G V+ + NG + E+ V Sbjct: 38 HQLPVQVTLELASAEMSLGELTQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 97 Query: 296 YTIRITDR 303 Y +R+ + Sbjct: 98 YGVRLLEV 105 >gi|32477467|ref|NP_870461.1| flagellar motor switch protein fliN [fragment] [Rhodopirellula baltica SH 1] gi|32448018|emb|CAD77538.1| probable flagellar motor switch protein fliN [Fragment] [Rhodopirellula baltica SH 1] Length = 144 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + ++++K S + K ++ ++ + KK L+ ++ L G ++ F Sbjct: 45 RMSENATEDKPTEPSPPTSSMYKEKVLKIRTTVNVTLAEKKEPLRKILALVPGSMLTFDV 104 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQ 308 L A G I + E ++G + +R+ + + + Sbjct: 105 HCDRPLTLRAGGHPIATGETVKIGDKFGLRVREIGVPKED 144 >gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] Length = 118 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +QL V + + + +L ++ + G V+ + NG + E+ V Sbjct: 41 HQLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 100 Query: 296 YTIRITDR 303 Y +R+ + Sbjct: 101 YGVRLLEV 108 >gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449] gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC 51449] Length = 117 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + K L +++ + G +I + NG+ I E+ + Sbjct: 34 LLDMEALFNAELGSTKIPLGEILRFEKGSIIDLGKPAGESVEIFINGRVIGKGEVMVYER 93 Query: 295 NYTIRITDRINFD 307 N IRI + ++ + Sbjct: 94 NLAIRINEILDSN 106 >gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH] gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia profundicola AmH] Length = 103 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 V ++ + TL++++ L+ G VI E A + NG+ I E+ Sbjct: 20 NLLDTEVLFESDLGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRIIGKGEVMVYE 79 Query: 294 KNYTIRITDRINFDQ 308 KN IR+ + ++ +Q Sbjct: 80 KNLAIRLNEVLDANQ 94 >gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium BAC17H8] Length = 110 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 39/97 (40%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 +++ + + R ++V + + + ++D++ L G VI Sbjct: 11 AATETMDAETAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLNEGSVIELDRLAGD 70 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + ANG I E+ VG+ + IR T+ ++ + Sbjct: 71 PLDILANGTMIAKGEVVMVGERFGIRFTEIVDPAARM 107 >gi|58038896|ref|YP_190860.1| flagellar motor switch protein [Gluconobacter oxydans 621H] gi|58001310|gb|AAW60204.1| Flagellar motor switch protein FliN [Gluconobacter oxydans 621H] Length = 105 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 1/104 (0%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L K Q E S D + Y + V + + + ++ L G V Sbjct: 1 MLDKDDFSVEKEQFSKEEISGDKTPNDLQAIYDIPVTLSAVLGRATMPINQLLKLGRGAV 60 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGK-NYTIRITDRINFD 307 + + + N + I E+ V + + +T+ + + Sbjct: 61 VELDRKIGDPIDILVNNRLIARGEVVMVDETRLGVTMTEIVKSE 104 >gi|254502033|ref|ZP_05114184.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] gi|222438104|gb|EEE44783.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] Length = 111 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 5/108 (4%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 IP + L + + E + + V I + K + D++ L Sbjct: 9 IPLDELE-----APDRAGEQEEIPHPQSAADLEAVFDVPVRISAVLGHSKMHVSDLLKLA 63 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G V+ + + N + + E+ V + +T+ I D+ Sbjct: 64 SGTVLELDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 111 >gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima DSM 10411] gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima DSM 10411] Length = 95 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + + + +KD++ K G +I ++ K + E+ + + Sbjct: 17 DIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIENKPLGMGEVIVLDNKF 76 Query: 297 TIRITDRINFDQ 308 IRIT+ D Sbjct: 77 AIRITNIFTKDD 88 >gi|91795009|ref|YP_564660.1| hypothetical protein Sden_3662 [Shewanella denitrificans OS217] gi|91717011|gb|ABE56937.1| hypothetical protein Sden_3662 [Shewanella denitrificans OS217] Length = 293 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 82/280 (29%), Gaps = 23/280 (8%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDIS---YTSCQSGKFSHIIHSFKENFVFSQASLSS 90 S + F + + + I+ Y S + S I + + Sbjct: 29 ARSRIVKRLSHFKRPVIDAVNRIFMPITRQGYPSLSTITLSEIDSPVQAETHLGWFACRH 88 Query: 91 WSSNFFI-GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 + L G+ + R S E +L KR + VL Sbjct: 89 QQKTLAWWRVDRCTLEQLASGYYGSQKNPLSSPL-RQPSQSEFRLIKRLFINVFEVL--- 144 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 P E + ++ N + E + T ++A + + + L Sbjct: 145 --------PFEELDLEELEIELVKNHATIEADAVWALEFTQGSLAPALHIYMASSLL--- 193 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + S DL A Q+ V + + + + + +K G ++P Sbjct: 194 --GLVQDMPNQKPISTDLPTKLANWLTQMPVKLRLTLGHQDIPVDSIDQMKAGDILPINL 251 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K+ +L+ K ++S + ++T N + Sbjct: 252 YPKS--VLAVGTKALFSATVHSHDGQMLAKLTQDTNHYED 289 >gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis TXDOH] gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis Bt4] gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] Length = 115 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + + +L +++ + G V+ ++ NG + E+ Sbjct: 36 RHLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVV 95 Query: 292 VGKNYTIRITDRINFDQ 308 G+NY ++I D N Sbjct: 96 SGENYGLKIIDLENLGD 112 >gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546] gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546] Length = 122 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K L D++ G VI + NG + E+ V + Sbjct: 45 KNIPVTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVNEK 104 Query: 296 YTIRITDRINF 306 Y +R+ D ++ Sbjct: 105 YGLRLIDVVDS 115 >gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC BAA-613] gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC BAA-613] Length = 320 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 31/302 (10%), Positives = 94/302 (31%), Gaps = 41/302 (13%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSSWSSNFFIGCSNNLVI 105 I + V +S + + + V ++ + S++ + +I Sbjct: 19 NILGSLLGRSVKMSVSKVEETDMGSLAEGLPHFNVAIESRKAVGGMSADQLYIFAKEDMI 78 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEK-------KLAKRTIAQISAVLNQ------CIST 152 L ++G + L +LST+++ + + Sbjct: 79 RLTNYIMGVPVDAQSPLDEIALSTLKEVASQCVGAAMDELNDFLGRDMRDTITRISAFDN 138 Query: 153 TQESSPNLEDFYDIDYLKKN------TNRLSNEFVTTINMNMT-IENVASSFVLIIPQET 205 T+ + + D + + ++ + + ++ + + Sbjct: 139 TERIQDIIRSWNAEDSVLLMGLHYVIDGVVESDAYIVAAQALKQVLGISDMADMPCQETG 198 Query: 206 LLKTTLISLSSQNKSENQS-------------------EDLIDPFARKTYQLNVNIDTRI 246 + + Q ++ ++ I +K + +++ R+ Sbjct: 199 GQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKKLLDITLDVSVRL 258 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++KD+++LK GQ++ + + A + NG+ I ++ G + RI + + Sbjct: 259 GSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGDRFGARIIEVVGK 318 Query: 307 DQ 308 + Sbjct: 319 RE 320 >gi|54307254|ref|YP_128274.1| putative flagellar motor switch protein [Photobacterium profundum SS9] gi|46911674|emb|CAG18472.1| putative flagellar motor switch protein [Photobacterium profundum SS9] Length = 117 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 1/80 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + VN+ + + + D++ + +G VI + NG + E+ V Sbjct: 37 IRNIPVNLTLEVASTELMVGDLMNIGLGTVIELDKISGEAMDVKVNGTLLGHAEVVIVNN 96 Query: 295 NYTIRITDRINFDQKSLKNF 314 Y +R+ ++ D LK Sbjct: 97 KYGLRLVSVVD-DNDMLKGL 115 >gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas mendocina NK-01] gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas mendocina NK-01] Length = 279 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 77/276 (27%), Gaps = 28/276 (10%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P + + I L Y + + F +++++ Sbjct: 12 PADSLTRLKPQKLGRHYHKIPHYIRELSSKYPRIISDYFLRNYRINLELLRVDVHEQVDK 71 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 ++ L+ LE G +P +ST E Sbjct: 72 EAECLYRSPL-----------GKVGFAMDRPLLTEALECYYGG--TCLPNHEETPVSTSE 118 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ R +S + + I Q D E+V N I Sbjct: 119 QRMRTRLGLDVSQLFARSILAGQTFGKLEPYDNTYDETTW-------EYVAQFNFTSHIT 171 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 +S + + + + + T ++ + + QL V +D + + Sbjct: 172 GSQASIFIYLDTQLVDELTSRLTPPAPAAQAGNSL------NQIRQLPVRLDCVVASLQM 225 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 L V+ L+ G ++P + N ++++ Sbjct: 226 PLSQVLALRPGDILPMRLL--ERCDVQINQQKLFRG 259 >gi|308273527|emb|CBX30129.1| hypothetical protein N47_D29380 [uncultured Desulfobacterium sp.] Length = 71 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%) Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + + D++ L G +I + + K I E+ V + IR+T+ Sbjct: 1 MELGQTRMLINDLLQLGQGSIIELNKQIGDPIDIFICDKLIAKGEVVVVDDKFGIRLTNI 60 Query: 304 INFDQKS 310 I+ ++ Sbjct: 61 ISPTERI 67 >gi|224825754|ref|ZP_03698858.1| surface presentation of antigens (SPOA) protein [Lutiella nitroferrum 2002] gi|224601978|gb|EEG08157.1| surface presentation of antigens (SPOA) protein [Lutiella nitroferrum 2002] Length = 291 Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 73/213 (34%), Gaps = 12/213 (5%) Query: 91 WSSNFF-IGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + L++ +L+ G R + E++LA+ +++A L Sbjct: 79 LDGAGIGVNVARPLLLRILDYRYGGRASPALPAAQPPRE-TETERRLARMLGERLTARLV 137 Query: 148 QCISTTQES-SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + P L+ ++ L + + + AS L + Sbjct: 138 QAVRRLSRRPLPTLKAPPAVETLPFPPGDAPA-WHMQLTLGEAGSGGASQIGLALDAAVF 196 Query: 207 LKT-TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + L + + L PFA + + + R+ K+ TL +++ L++G V+ Sbjct: 197 AQVLRQLPLQAALPGPAAGKTLARPFAEQLS---IRLSARLMEKRLTLGEILDLRVGSVL 253 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 P + A + +++ + + Sbjct: 254 PVSL--QQQADVYIGRTRVFTAAVAESHGKLCL 284 >gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS155] gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS155] Length = 118 Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 30/88 (34%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S++ + QL V + + + +L ++ + G VI Sbjct: 20 SESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPL 79 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDR 303 + NG + E+ V Y +R+ + Sbjct: 80 DIRVNGALLGRGEVVEVAGRYGVRLLEI 107 >gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175] gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175] Length = 118 Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 30/88 (34%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S++ + QL V + + + +L ++ + G VI Sbjct: 20 SESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPL 79 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDR 303 + NG + E+ V Y +R+ + Sbjct: 80 DIRVNGALLGRGEVVEVAGRYGVRLLEI 107 >gi|315179666|gb|ADT86580.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 272 Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 76/221 (34%), Gaps = 33/221 (14%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 F+ ++++ITL + GA+ + L++ +++L +R ++ Sbjct: 85 GGALFVRLDSHMLITLADRFYGANMARSQSV----LTSSDRRLQERIGKVVAH-----WV 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 QE + + + N +++ + LI+ + + Sbjct: 136 APQEMW------------QLHEGDIGNGIGLKAELSVRYADQHGVLTLIMESQLVQTLID 183 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + +L F R V ++ ++ K L +V+ L ++P Sbjct: 184 QL------DLQPNTELNAQFRRSLQHTPVRLNVLLSKKTMPLSEVLRLTPNDILPIDLL- 236 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + +S + ++S + + +N D++SL+ Sbjct: 237 -STVPVSIGHERLFSGRIAEQEGQLVL----ILNQDKESLR 272 >gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] Length = 113 Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 R ++ V + + L D+++ + G + ++ NG + E+ Sbjct: 34 MRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEPLVIKVNGTPVGLGEVVV 93 Query: 292 VGKNYTIRITD 302 G++Y +RI + Sbjct: 94 SGEHYGLRIIE 104 >gi|156976198|ref|YP_001447104.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116] gi|156527792|gb|ABU72877.1| hypothetical protein VIBHAR_04969 [Vibrio harveyi ATCC BAA-1116] Length = 272 Score = 65.8 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 50/305 (16%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70 P+ I L + I + SL L + + + ++ + + + +F Sbjct: 8 PISDIKLLDVELLGKPIHIIREKLESLISESCSGLTNELQNWLSTNKIEANLVAVELHRF 67 Query: 71 SHIIHSFKENFVF----SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 S + + +I +I L + GA+ E Sbjct: 68 S--------PTLLDKDQTSTYQHQDGGMVYIYGDAQALIKLADRFYGAATERTSTS---- 115 Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 L+ + +L +R I L + + Sbjct: 116 LTASDLRLQERISRIIINWLAPQEMW-------------------QTCEYETPRGIGLHA 156 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +++ E+ + L + + + + DL PF R V ++ Sbjct: 157 ELSIAFEDFQGAIHLKLDSTMIQTLIEQL------ALHNDTDLYQPFCRSLESTPVRLNV 210 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ K L DVV L+ ++P +S + ++S + + Sbjct: 211 VLSKKTMALSDVVGLQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IF 264 Query: 305 NFDQK 309 N D++ Sbjct: 265 NPDKE 269 >gi|86157133|ref|YP_463918.1| surface presentation of antigens (SPOA) protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773644|gb|ABC80481.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter dehalogenans 2CP-C] Length = 324 Score = 65.8 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 33/311 (10%), Positives = 73/311 (23%), Gaps = 47/311 (15%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ-AS 87 + LG + + + +V ++ + Sbjct: 15 AELAAAPRRLGAAVAVAAARALSDLVGAEVSVTGRPVPG-------RALPRPAAARIAID 67 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-------------------S 128 L + + LV+ L++ + G P + + Sbjct: 68 LPALPGTAILEVEPALVVRLVDRMAGGDGGPAPAAALTPVEATALELLALAALDGACGVA 127 Query: 129 TVEKKLAKRTIAQISA-------VLNQCISTTQESSPNLEDFYDIDYLK---------KN 172 VE++LA R + L + + L + L+ Sbjct: 128 EVEERLAPRLARATAEPAGALALELEIAAGQARGHARLLVPPAAVRALRGPADLDRRVPV 187 Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI---SLSSQNKSENQSEDLID 229 L + +++ P + + Sbjct: 188 PGSLRRGTAALTAAELDALE-PGDVLVVDPPADGRDALALPGGLRALGRIDGEGFHVEET 246 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + QL V ++ + L +V L+ G V+ + L + + EL Sbjct: 247 EMIERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAVARGEL 306 Query: 290 GRVGKNYTIRI 300 V +RI Sbjct: 307 VDVEGAVGVRI 317 >gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1] gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1] Length = 108 Score = 65.8 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 26/76 (34%) Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 DP + +NV I + ++ ++ + G VIP + AN + Sbjct: 21 WSDPSVSQVKAVNVEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVAR 80 Query: 287 CELGRVGKNYTIRITD 302 E+ I +T Sbjct: 81 GEIQISDDKIAIAVTR 96 >gi|91200231|emb|CAJ73275.1| strong similar to flagellar motor switch protein FliN [Candidatus Kuenenia stuttgartiensis] Length = 120 Score = 65.8 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 28/78 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + +KD++ L G ++ T L GK + E+ V Sbjct: 39 DLILDVTVPVSVELGRANMLIKDILALSQGSIVELEKVAGTPVELLVRGKLLARGEVVVV 98 Query: 293 GKNYTIRITDRINFDQKS 310 + + ++IT + Sbjct: 99 EERFGLKITAICGPQDRV 116 >gi|114797535|ref|YP_758983.1| SPOA family protein [Hyphomonas neptunium ATCC 15444] gi|114737709|gb|ABI75834.1| SPOA family protein [Hyphomonas neptunium ATCC 15444] Length = 246 Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 12/214 (5%) Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK---LAKRTIAQ-ISAVLNQCISTTQ 154 S L + + + + ++ + ++ K ++ + Sbjct: 26 VSPGLCAIATDGA--GAARIVAKRLSQDFESAKEASALFLKLMFEAPAVSLWRATAEALE 83 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214 + D ++ N ++ I ++ E + L+ + L Sbjct: 84 GHQADTLASPLSDPMQAAGNFETDSRYLVIAYSVMPEALQCQIWLVFDLDYL--MGCAHE 141 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + + +EN+ ++ ++ ++ T+ + LK+G +IP + Sbjct: 142 AERRAAENKRPSTSRQLRDSVMSSSIRVEAVLDKISMTIGECSRLKVGDLIPLPDTDPGS 201 Query: 275 AIL---SANGK-EIYSCELGRVGKNYTIRITDRI 304 L + NG+ EI CE+G + +++ + Sbjct: 202 VRLNAETVNGQIEIGQCEMGVWKRQRALKLKQPV 235 >gi|163802008|ref|ZP_02195904.1| type III secretion protein [Vibrio sp. AND4] gi|159174149|gb|EDP58957.1| type III secretion protein [Vibrio sp. AND4] Length = 321 Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q K N ++ QL + + + + TL+ + L+ G Sbjct: 227 QEKESNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPVSNPVT 286 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + ANGK I CEL + + +R+ + Q+ + Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQEPV 321 >gi|114569234|ref|YP_755914.1| flagellar motor switch protein [Maricaulis maris MCS10] gi|114339696|gb|ABI64976.1| flagellar motor switch protein FliN [Maricaulis maris MCS10] Length = 118 Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 26/74 (35%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + VNI + + ++ L G V+ + + N + + E+ V Sbjct: 43 VFDVPVNISAVLGKAHIDVNSLLKLTSGSVVELDRKIGEAIDIYVNNRLVARGEVVVVDD 102 Query: 295 NYTIRITDRINFDQ 308 + +T+ I Sbjct: 103 RLGVTMTEIIKDGD 116 >gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum acetoxidans DSM 771] gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum acetoxidans DSM 771] Length = 128 Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + T+++V+ L G +I +S N ++ E+ + Sbjct: 42 KHIEDVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGELVTMSINNQKFGRGEVMVI 101 Query: 293 GKNYTIRITDRINF 306 NY IRIT Sbjct: 102 NDNYGIRITSVFKP 115 >gi|167590549|ref|ZP_02382937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ubonensis Bu] Length = 211 Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 54/212 (25%), Gaps = 14/212 (6%) Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 W + + + + A + + L Sbjct: 3 WRCHGAVLFDAPDALAV----FFAERPAARPDARAVYAGLPVPLVFEIGRTELTTAELA- 57 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 +E + + RL I + + + +P L T Sbjct: 58 DVVAGDIIAIEHWRAHEQNLLCVARLPAAPAWEITGRPSGNRLTVERIREMP---LEPTR 114 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + E R L V++ + L ++ L+ G VI Sbjct: 115 TDTPPTLSPDAPPHEA-----PRTLDALAVDLRFELPSTSMPLGELAVLQPGAVIELQQG 169 Query: 271 EKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301 L ANG I + L VG+ +R+ Sbjct: 170 INQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 201 >gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] Length = 118 Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L V + + + +L +++ L G ++ L NG + E+ V Sbjct: 41 SHLPVQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVVEVNGR 100 Query: 296 YTIRITDR 303 Y +R+ + Sbjct: 101 YGVRLLEV 108 >gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4] gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4] Length = 123 Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 6/113 (5%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT------YQLNVNIDTRINLKKTTLK 254 +P+ K + + S+ + +L + + + + L Sbjct: 1 MPETESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL 60 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ + G VI NG+ I E+ +N IR+ + ++ + Sbjct: 61 QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSN 113 >gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e] gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e] Length = 111 Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 31/77 (40%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++ V + + +L +++ + G V+ ++ NG + E+ Sbjct: 32 RQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVV 91 Query: 292 VGKNYTIRITDRINFDQ 308 G+NY +++ D N Sbjct: 92 SGENYGLKVIDLENLGD 108 >gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4] gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4] Length = 122 Score = 65.4 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K+ L D++ G VI + NG + E+ + Sbjct: 45 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104 Query: 296 YTIRITDRINF 306 Y +R+ + + Sbjct: 105 YGLRLIEVHDS 115 >gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum SL003B-26A1] gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum SL003B-26A1] Length = 112 Score = 65.4 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 32/102 (31%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L + E + + V I + + + D++ L G V+ Sbjct: 11 LDELESPGRRSDDGEEGVHVQSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLAAGTVLE 70 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + N + + E+ V + +T+ I D+ Sbjct: 71 LDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 112 >gi|90577376|ref|ZP_01233187.1| flagellar motor switch protein [Vibrio angustum S14] gi|90440462|gb|EAS65642.1| flagellar motor switch protein [Vibrio angustum S14] Length = 121 Score = 65.4 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 217 QNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 Q + ++ L +++ ++ V + ++ + +L +++ G VI Sbjct: 21 QLEQFEETPQLDSSMSQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNG 80 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + NG + E+ + + Y +R+ D + ++ Sbjct: 81 EPLDVKVNGSLMGHAEVVVINEKYGLRLIDVVESPLNTMDG 121 >gi|118593639|ref|ZP_01551015.1| flagellar motor switch protein [Stappia aggregata IAM 12614] gi|118433750|gb|EAV40411.1| flagellar motor switch protein [Stappia aggregata IAM 12614] Length = 111 Score = 65.4 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 5/108 (4%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 IP + L S+ + DL + + V I + + + D++ L Sbjct: 9 IPLDELEAPERRLDDSETHVPQSAADL-----EAVFDVPVRISAVLGHSRMHVSDLLKLA 63 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G V+ + + N + + E+ V + +T+ I D+ Sbjct: 64 SGTVLELDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 111 >gi|89072283|ref|ZP_01158862.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89051815|gb|EAR57267.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 121 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 38/103 (36%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + L +++ + ++ V + ++ + +L +++ G VI Sbjct: 19 DLQLEQFDETPQLDNSMSQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKL 78 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + NG + E+ + + Y +R+ D + ++ + Sbjct: 79 NGEPLDVKVNGSLMGHAEVVVINEKYGLRLIDVVESPLNTMDS 121 >gi|209966468|ref|YP_002299383.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|209959934|gb|ACJ00571.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 105 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 24/75 (32%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V + R+ ++ + ++ L V+ L N + + EL Sbjct: 17 RNSILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVDLFVNDRLVARGELVV 76 Query: 292 VGKNYTIRITDRINF 306 V + I + + Sbjct: 77 VDGRLGLTIVELMPQ 91 >gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] Length = 123 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ VN+ + + TLK+++ + G VI + NG E+ + NY Sbjct: 47 KIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNY 106 Query: 297 TIRITD 302 +RI + Sbjct: 107 GLRIVE 112 >gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 120 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K+ L D++ G VI + NG + E+ V Sbjct: 43 KNIPVTVTLEVASKEVALGDLMKAGEGSVIELDKMNGEPLDVKVNGSLMGHAEVVVVNDK 102 Query: 296 YTIRITDRINF 306 Y +R+ D ++ Sbjct: 103 YGLRLIDVVDE 113 >gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15] gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000] gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15] gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000] Length = 103 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 26/69 (37%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + +NV I + ++ ++ + G VIP + + AN I E+ Sbjct: 23 QVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQISD 82 Query: 294 KNYTIRITD 302 I++T Sbjct: 83 DRIAIQVTR 91 >gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] Length = 128 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 2/104 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTL 259 P + L KS ++ + QL V + + + +L ++ + Sbjct: 14 PILSDDDFLLDDDIFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRM 73 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 G VI + NG + E+ V Y +R+ + Sbjct: 74 GEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGRYGVRLLEI 117 >gi|308050040|ref|YP_003913606.1| surface presentation of antigens (SPOA) protein [Ferrimonas balearica DSM 9799] gi|307632230|gb|ADN76532.1| surface presentation of antigens (SPOA) protein [Ferrimonas balearica DSM 9799] Length = 287 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 65/226 (28%), Gaps = 28/226 (12%) Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + L + G + S E +L KR + L Sbjct: 87 ERQPLTWWG---IDRCSLDQLASSYYGG-GQRPLSCPLTPPSQSELRLVKRLMVAALDAL 142 Query: 147 -NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP--Q 203 + LE + + + +P Q Sbjct: 143 AQERWDIDALDLEVLEPGQTLPAP------------LRWQFD-------WARESALPKMQ 183 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 L L SL+ + DL R+ +QL + + ++ + + + L+ G+ Sbjct: 184 WMLSDAALASLTRTPMQAPVAPDLAQRLKRRLHQLPIRLSCQLGGQSMPTEALAGLQPGE 243 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ++P ++ ++ G+ I+ + ++T ++ + Sbjct: 244 ILPLTLVRRSP--VAVGGRPIFHATVHAHEGQLVAKLTHELHQHED 287 >gi|144897407|emb|CAM74271.1| flagellar motor switch protein [Magnetospirillum gryphiswaldense MSR-1] Length = 107 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 27/76 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 Y + V + + + ++ L G V+ + + N + + E+ V Sbjct: 31 EAVYDIPVQVSAVLGKANMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 90 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I D+ Sbjct: 91 EDRLGVTMTEIIKTDR 106 >gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia oklahomensis EO147] gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia oklahomensis C6786] Length = 115 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++ V + + TL +++ ++ G V+ ++ NG + E+ Sbjct: 36 MQLLAKIPVQLTLEVGSATITLAELMAIEEGSVLELDRLAGEPLLIKINGTPVGHAEVVV 95 Query: 292 VGKNYTIRITD 302 G NY +++ D Sbjct: 96 SGDNYGLKLLD 106 >gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum kujiense DSM 16994] gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum kujiense DSM 16994] Length = 114 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 2/95 (2%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + +D + V + + TL +++ L+ G VI Sbjct: 10 SLHHEHGFDPEKELSWMDY--DGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPA 67 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 N + I E+ KN IRI + ++ Sbjct: 68 GESVESYVNRRIIGKGEVMVYEKNLAIRINEVLDS 102 >gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130] gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130] Length = 171 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 3/104 (2%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P+ K + + + +++D + + + D++ L I Sbjct: 27 PRYDFDKVADALADVSPAASRSPVSPKRDATNSLWSIPLDVDVVLGHARLPVSDLMNLSI 86 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCEL---GRVGKNYTIRITD 302 G + R + ANG I +L G+ + +R+T Sbjct: 87 GDTLSLDRRIGDPVEIVANGTTIAWGQLCAVDESGERFGVRLTK 130 >gi|163850081|ref|YP_001638124.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218528684|ref|YP_002419500.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240137214|ref|YP_002961683.1| flagellar motor switch protein fliN [Methylobacterium extorquens AM1] gi|254559226|ref|YP_003066321.1| flagellar motor switch protein fliN [Methylobacterium extorquens DM4] gi|163661686|gb|ABY29053.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218520987|gb|ACK81572.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240007180|gb|ACS38406.1| flagellar motor switch protein fliN [Methylobacterium extorquens AM1] gi|254266504|emb|CAX22268.1| flagellar motor switch protein fliN [Methylobacterium extorquens DM4] Length = 108 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ V + + + D++ L G V+P HR + NG+ I E+ V Sbjct: 25 DSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIVIV 84 Query: 293 ---GKNYTIRITDRINF 306 + + +T+ + Sbjct: 85 EEDNSRFGVSLTEVVGP 101 >gi|255028593|ref|ZP_05300544.1| flagellar motor switch protein FliM [Listeria monocytogenes LO28] Length = 99 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 39/98 (39%) Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 S+ + +P ++ + + + ++ + ++ +Q+ R+ KTT K Sbjct: 1 STMRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWK 60 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ L++G V+ + K + C +G+ Sbjct: 61 ELNKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKK 98 >gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei 668] gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305] gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei DM98] gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia pseudomallei 1655] gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei] gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei 668] gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305] gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia pseudomallei 1655] Length = 115 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 31/77 (40%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++ V + + +L +++ + G V+ ++ NG + E+ Sbjct: 36 RQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVV 95 Query: 292 VGKNYTIRITDRINFDQ 308 G+NY ++I D N Sbjct: 96 SGENYGLKIIDLENLGD 112 >gi|153832536|ref|ZP_01985203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio harveyi HY01] gi|148871331|gb|EDL70203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio harveyi HY01] Length = 321 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q K N ++ QL + + + + TL+ + L+ G Sbjct: 227 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVT 286 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + ANGK I CEL + + +R+ + Q+ Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQE 319 >gi|255022052|ref|ZP_05294058.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] gi|254968538|gb|EET26094.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] Length = 120 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + I + + K+++ L G VI + NG+ E V Sbjct: 36 DLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPLTIYINGEIFAYGEAVLV 95 Query: 293 G-KNYTIRITDRINFDQ 308 + + +R+T +N + Sbjct: 96 NQERFGVRLTALVNKED 112 >gi|269963171|ref|ZP_06177506.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832135|gb|EEZ86259.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 321 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 1/91 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + + QL + + + + TL+ + L+ G + Sbjct: 230 ETNMNDINSSEALTDH-QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMR 288 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ANGK I CEL + + +R+ + Q+ Sbjct: 289 ANGKIIGECELVNINERLGVRVLELFGGSQE 319 >gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae 12198] gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae 12198] Length = 112 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 28/75 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + K T+K+++ + G VI + N + + E+ Sbjct: 28 EGLLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVDVFINTRIVGRGEVMVY 87 Query: 293 GKNYTIRITDRINFD 307 KN IR+ + ++ + Sbjct: 88 EKNLAIRLNEILDSN 102 >gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01] gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01] Length = 122 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K+ L D++ G VI + NG + E+ + Sbjct: 45 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104 Query: 296 YTIRITDRINF 306 Y +R+ D + Sbjct: 105 YGLRLIDVHDS 115 >gi|41834183|gb|AAS13321.1| VscQ [Vibrio harveyi] Length = 321 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q K N ++ QL + + + + TL+ + L+ G Sbjct: 227 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVT 286 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + ANGK I CEL + + +R+ + Q+ Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQE 319 >gi|254294568|ref|YP_003060591.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814] gi|254043099|gb|ACT59894.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814] Length = 115 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V++ I + +++ L G V+ R + N + + E+ V Sbjct: 43 DVPVSVQAVIGRTTMEVSELMHLGEGSVLELDRRVGEAIDIYVNSRLVARGEIVVVDDRL 102 Query: 297 TIRITDRIN 305 + +T+ I Sbjct: 103 GVTMTEIIK 111 >gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] Length = 124 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 2/104 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTL 259 P + L KS ++ + QL V + + + +L ++ + Sbjct: 10 PILSDDDFLLDDDIFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRM 69 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 G VI + NG + E+ V Y +R+ + Sbjct: 70 GEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGRYGVRLLEI 113 >gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM 19370] Length = 93 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++V + + + LKDV+ L V+ + NGK I E+ Sbjct: 9 DLIMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGEVVAQ 68 Query: 293 GKNYTIRITDRINFD 307 G + +RI + + D Sbjct: 69 GDRFGLRIVELVGQD 83 >gi|156974016|ref|YP_001444923.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116] gi|156525610|gb|ABU70696.1| hypothetical protein VIBHAR_01727 [Vibrio harveyi ATCC BAA-1116] Length = 322 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q K N ++ QL + + + + TL+ + L+ G Sbjct: 228 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVT 287 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + ANGK I CEL + + +R+ + Q+ Sbjct: 288 MRANGKIIGECELVNINERLGVRVLELFGGSQE 320 >gi|260427005|ref|ZP_05780984.1| surface presentation of antigens protein [Citreicella sp. SE45] gi|260421497|gb|EEX14748.1| surface presentation of antigens protein [Citreicella sp. SE45] Length = 355 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/269 (11%), Positives = 80/269 (29%), Gaps = 21/269 (7%) Query: 43 KKFLPKIFKEKMDLDVDISYT----SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98 K L + D+ D++ S + ++ + + + Sbjct: 4 AKALRRALSRTADVLWDLALVTHGVSQEMADQDGVVEMLPSGTLLLLLDGPGGALGLAM- 62 Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158 ++ L+E +P + R ++ + + + L + + P Sbjct: 63 IDREIMTGLIEVQTLLQVTQMP-VEERPITQTDAAMMAPLVDGTLDRLERYLEG-HPLRP 120 Query: 159 NLEDFYDIDYLKKNTNR-----LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 F ++ + +++++ + + +L++P Sbjct: 121 QFAGFRFGAMVEDARTAGLLLDAAGYRAFNVSVDLALGRRKGTILLVLP--------DRP 172 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + +E+ P RK L V +D + L L+ G +IP Sbjct: 173 DAGKADAEDGDAATPGPHERKMKLLPVRMDAVLCSLTIPLSAAQRLRAGDLIPLPPEALD 232 Query: 274 CAIL-SANGKEIYSCELGRVGKNYTIRIT 301 + G + LG++ +R++ Sbjct: 233 SVEFVAGAGPAVAGGRLGQMNGMRAVRLS 261 >gi|170748132|ref|YP_001754392.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] gi|170654654|gb|ACB23709.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] Length = 130 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ V + + + +++ L G ++P HR + NG+ I E+ V Sbjct: 47 DSILRIPVLMQVVLGSATMPVSNLMKLGRGAIVPLDHRVGEPVDVVVNGRVIARGEVVVV 106 Query: 293 ---GKNYTIRITDRINF 306 + + +T+ + Sbjct: 107 EDDNSRFGVSLTEIVGP 123 >gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC 13177] Length = 115 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 31/77 (40%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++ V + + +L +++ + G V+ ++ NG + E+ Sbjct: 36 RQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEVVV 95 Query: 292 VGKNYTIRITDRINFDQ 308 G+NY ++I D N Sbjct: 96 SGENYGLKIIDLENLGD 112 >gi|188579886|ref|YP_001923331.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] gi|179343384|gb|ACB78796.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] Length = 108 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ V + + + D++ L G V+P HR + NG+ I E+ V Sbjct: 25 DSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIVIV 84 Query: 293 ---GKNYTIRITDRINF 306 + + +T+ + Sbjct: 85 EEDNSRFGVSLTEVVGP 101 >gi|83859386|ref|ZP_00952907.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] gi|83852833|gb|EAP90686.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] Length = 125 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 26/74 (35%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + VNI + + ++ L G V+ + + N + + E+ V Sbjct: 50 VFDVPVNISAVLGKAHVDVNSLLRLTSGSVLELDRKVGEAIDIYVNSRLVARGEVVVVDD 109 Query: 295 NYTIRITDRINFDQ 308 + +T+ I Sbjct: 110 RLGVTMTEIIKDGD 123 >gi|260779322|ref|ZP_05888214.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] gi|260605486|gb|EEX31781.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] Length = 122 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K L D++ G VI + NG + E+ V + Sbjct: 45 KNIPVTVTLEVASKDIALGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVNEK 104 Query: 296 YTIRITDRINF 306 Y +R+ D ++ Sbjct: 105 YGLRLIDIVDS 115 >gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus saanensis SP1PR4] gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus saanensis SP1PR4] Length = 100 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 9/87 (10%), Positives = 28/87 (32%), Gaps = 1/87 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + + ++ + ++ LK+++ L G VI Sbjct: 1 MEQVNENDPTVTPAL-DLLMDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVD 59 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDR 303 L + + E+ + + + +T+ Sbjct: 60 LVIGDRIVARGEVVVLNGYFALNVTEV 86 >gi|296283237|ref|ZP_06861235.1| flagellar motor switch protein [Citromicrobium bathyomarinum JL354] Length = 126 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 34/76 (44%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 +++ V + + + T+ +++++ G+V+ + + + + I E+ + Sbjct: 51 DAVHEVPVKMQAVLGRARMTVSELMSIAPGRVVELDRKVGEPVDIFVSNRLIARGEVVLI 110 Query: 293 GKNYTIRITDRINFDQ 308 K + +T+ ++ D Sbjct: 111 DKALGVTLTEIVHEDD 126 >gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879] gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879] Length = 128 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + L +++ + G +I + N + + E+ Sbjct: 39 EGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQKPAGASVEIFVNDRVVGKGEVMVY 98 Query: 293 GKNYTIRITDRINFD 307 +N IRI + ++ + Sbjct: 99 ERNLAIRINEILDSN 113 >gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] Length = 116 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++ V + + +L D+ + G V+ + NG I E+ G Sbjct: 39 LRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSGD 98 Query: 295 NYTIRITD 302 NY +R+ + Sbjct: 99 NYGLRVVE 106 >gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1] gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5] gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5] gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1] Length = 117 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + L++V+ + G VI NG+ I E+ Sbjct: 33 KGLLDMEITFMAELGSTFIPLREVLRFERGSVIDLQKPAGESVDTFVNGRVIGKGEVMVY 92 Query: 293 GKNYTIRITDRINFD 307 KN IR+ + ++ + Sbjct: 93 EKNLAIRLNEVLDSN 107 >gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] Length = 122 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + + + L D+ + G VI + NG + E+ VG Sbjct: 45 QQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRVNGALLGKGEVVEVGGR 104 Query: 296 YTIRITDR 303 Y +R+ + Sbjct: 105 YGVRLLEV 112 >gi|315121855|ref|YP_004062344.1| putative flagellar motor switch protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495257|gb|ADR51856.1| putative flagellar motor switch protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 136 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 7/109 (6%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 PQ L ++ S+ N +S D I + VNI + + ++V L Sbjct: 32 PQNDLDDSSEKISSNSNNIFEKSSDNI----DLIMNIPVNIQIILGSCCMQISNLVNLSK 87 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDRINFD 307 G VI R ++ N ++I E+ + ++ +R+ + +N Sbjct: 88 GDVITLDKRVGEAVDITINNQKIAKGEITIMEDDDTHFGVRVIELLNSK 136 >gi|134300237|ref|YP_001113733.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum reducens MI-1] gi|134052937|gb|ABO50908.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum reducens MI-1] Length = 128 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 26/74 (35%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + K ++V+ L +G V+ + N + E+ V Sbjct: 49 IEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIVND 108 Query: 295 NYTIRITDRINFDQ 308 + +RI + + Sbjct: 109 KFAVRINSITSPKK 122 >gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus Desulforudis audaxviator MP104C] gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus Desulforudis audaxviator MP104C] Length = 127 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V++ + T+++ ++L G VI + NG ++ E+ + Sbjct: 47 LDDVEVDVSAELGQTAMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVIND 106 Query: 295 NYTIRI 300 + +RI Sbjct: 107 LFVLRI 112 >gi|116514990|ref|YP_802619.1| hypothetical protein BCc_047 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256844|gb|ABJ90526.1| flagellar motor switch protein, C-ring protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 134 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + V + ++ KK T+++++ K G ++ + N I EL Sbjct: 59 ALSSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELVVNN 118 Query: 294 KNYTIRITDRI 304 Y ++IT + Sbjct: 119 DCYGVQITKLL 129 >gi|254473327|ref|ZP_05086724.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062] gi|211957443|gb|EEA92646.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062] Length = 138 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + S++ +D + V++ + + ++ L G VIP HR + Sbjct: 44 EKGVSDENVDRNLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVV 103 Query: 280 NGKEIYSCELGRV---GKNYTIRITDRINFD 307 NG+ + E+ V + + +T+ + Sbjct: 104 NGRTVARGEIVVVEDDNSRFGVSLTEIVGAK 134 >gi|327542145|gb|EGF28638.1| flagellar motor switch protein fliN [Rhodopirellula baltica WH47] Length = 99 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++++K S + K ++ ++ + KK L+ ++ L G ++ F Sbjct: 5 ATEDKPTEPSPPTSSMYKEKVLKIRTTVNVTLAEKKEPLRKILALVPGSMLTFDVHCDRP 64 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR-INFDQ 308 L A G I + E ++G + +R+ + + + Sbjct: 65 LTLRAGGHPIATGETVKIGDKFGLRVREIGVPKED 99 >gi|170704156|ref|ZP_02894757.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria IOP40-10] gi|170130934|gb|EDS99660.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria IOP40-10] Length = 193 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 10/192 (5%) Query: 111 LLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK 170 + A+ + +++ L + + +E + + Sbjct: 1 MFFATPVATRADTRAAYASLPVPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNL 59 Query: 171 KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP 230 R+ I + + + +P L T + S+ + + Sbjct: 60 LCVARVPAAPAWEITGRPSGNRLTVERIREMP---LEPTRTDTPSATTHDASADDA---- 112 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCEL 289 R L V++ + L ++ L+ G VI L ANG I + +L Sbjct: 113 -PRSLDGLAVDLRFELPPTSIPLGELGALQPGAVIELQQGINQSVIHLVANGMLIGTGQL 171 Query: 290 GRVGKNYTIRIT 301 VG+ +R+ Sbjct: 172 IAVGQKLGVRVV 183 >gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] Length = 118 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +QL V + + + +L ++ + G V+ + NG + E+ V Sbjct: 41 HQLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 100 Query: 296 YTIRITDR 303 Y +R+ + Sbjct: 101 YGVRLLEV 108 >gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] Length = 101 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 V ++ I + ++++++ LK G +I A + NG+ I E+ Sbjct: 17 NLIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVYVNGRIIGKGEVMVYE 76 Query: 294 KNYTIRITDRINFD 307 KN IR+ + ++ + Sbjct: 77 KNLAIRLNEVLDAN 90 >gi|304311654|ref|YP_003811252.1| Type III secretion pathway protein [gamma proteobacterium HdN1] gi|301797387|emb|CBL45607.1| Type III secretion pathway protein [gamma proteobacterium HdN1] Length = 379 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 QL V + ++ + TL ++ L+ G V P + + N + EL +G Sbjct: 305 LSQLPVELSLQVGQLQITLGELENLQPGYVFPMSSQNDELTLTVLVNQQPAGLGELVSIG 364 Query: 294 KNYTIRITD 302 +RIT+ Sbjct: 365 NQLGVRITE 373 >gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99] gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27] gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12] gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128] gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38] gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8] gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27] gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12] gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128] gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38] gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8] gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7] Length = 123 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 6/113 (5%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT------YQLNVNIDTRINLKKTTLK 254 +P+ K + + ++ + +L + + + + L Sbjct: 1 MPETEANKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL 60 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ + G VI NG+ I E+ +N IR+ + ++ + Sbjct: 61 QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSN 113 >gi|332162916|ref|YP_004299493.1| flagellar motor switch protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667146|gb|ADZ43790.1| Flagellar motor switch protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862339|emb|CBX72499.1| hypothetical protein YEW_GP28300 [Yersinia enterocolitica W22703] Length = 272 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 68/206 (33%), Gaps = 16/206 (7%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQ--LYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 N +L++ +L + G + E + N + E +L + +I+ ++ Sbjct: 66 GNIAFDIERSLLLNILNDYYGLTKEKNNSSIVDNTPKTQTEDRLKNKLSIEIADLILN-- 123 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 P + I + ++ + F L+I + + Sbjct: 124 ------QPMFGEPLVIKNNNATPIV---NWSYRMDFLLKDYEDGG-FTLLIDTPHVDRLL 173 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + F + QL + + ++++ + T D++ +K G +IP Sbjct: 174 NTLHTESKEKKKTQTLSEKQFNQLVSQLPIRLTSQLSCSELTFFDLMAIKEGDIIPASLP 233 Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296 E+ + + ++S + Sbjct: 234 ERFP--VFIGKQPLFSAVVTESRGKL 257 >gi|209964122|ref|YP_002297037.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|7025357|gb|AAF35847.1|AF220003_1 polar flagellar motor switch protein FpiN [Rhodospirillum centenum] gi|209957588|gb|ACI98224.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 108 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 27/76 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 Y + V I + + ++ L G V+ + + N + + E+ V Sbjct: 32 ESVYDIPVQISAVLGKCTMQVSSLMKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 91 Query: 293 GKNYTIRITDRINFDQ 308 + +T+ I D+ Sbjct: 92 EDRLGVTMTEIIKSDR 107 >gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio harveyi ATCC BAA-1116] gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116] Length = 122 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K+ L D++ G VI + NG + E+ + Sbjct: 45 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104 Query: 296 YTIRITDRINF 306 Y +R+ + + Sbjct: 105 YGLRLINVHDS 115 >gi|15616703|ref|NP_239915.1| flagellar motor switch protein FliN [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386788|sp|P57183|FLIN_BUCAI RecName: Full=Flagellar motor switch protein FliN gi|25403545|pir||A84939 flagellar motor switch protein fliN [imported] - Buchnera sp. (strain APS) gi|10038766|dbj|BAB12801.1| flagellar motor switch protein fliN [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 133 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + VNI + + +KD + G ++ K + NG I S E+ Sbjct: 51 KKTILNVPVNITVELGTSRIKIKDFLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVV 110 Query: 292 VGKNYTIRITDRINF 306 + + Y IRIT+ N Sbjct: 111 LEEKYGIRITNIKNS 125 >gi|219681459|ref|YP_002467844.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682015|ref|YP_002468399.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471134|ref|ZP_05635133.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621748|gb|ACL29904.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624302|gb|ACL30457.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085823|gb|ADP65905.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086396|gb|ADP66477.1| flagellar motor switch protein FliN [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086975|gb|ADP67055.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087552|gb|ADP67631.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 133 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + VNI + + +KD + G ++ K + NG I S E+ Sbjct: 51 KKTILNVPVNITVELGTSRIKIKDFLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVV 110 Query: 292 VGKNYTIRITDRINF 306 + + Y IRIT+ N Sbjct: 111 LEEKYGIRITNIKNS 125 >gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] Length = 132 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-- 292 ++ V + + + D++ L G VIP HR + NG+ + + V Sbjct: 51 ILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVED 110 Query: 293 -GKNYTIRITDRINFD 307 + + +T+ + + Sbjct: 111 ENSRFGVSLTEIVGGN 126 >gi|27381990|ref|NP_773519.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] gi|27355160|dbj|BAC52144.1| fliN [Bradyrhizobium japonicum USDA 110] Length = 124 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ V + + + +++ L G V+P HR + NG+ + E+ V Sbjct: 42 DAILRIPVTMQVVLGSATIPVANLMKLGRGAVVPLDHRVGEPVDVVVNGRIVARGEVVVV 101 Query: 293 ---GKNYTIRITDRINF 306 + + +T+ + Sbjct: 102 EEDNSRFGVSLTEIVGP 118 >gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio sp. Ex25] gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio sp. Ex25] gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] Length = 123 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K+ L D++ G VI + NG + E+ V Sbjct: 46 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDK 105 Query: 296 YTIRITDRINF 306 Y +R+ D + Sbjct: 106 YGLRLIDVHDS 116 >gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|258622512|ref|ZP_05717534.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262173378|ref|ZP_06041055.1| putative flagellar motor switch protein [Vibrio mimicus MB-451] gi|258585212|gb|EEW09939.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261890736|gb|EEY36723.1| putative flagellar motor switch protein [Vibrio mimicus MB-451] Length = 267 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 33/209 (15%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN--QC 149 F+ N ++I L + GA+ + + L+ + ++ +R I L Sbjct: 87 GGRVFVHADNVVLIKLADRFYGAN----EERDSTKLTNSDLRIQERISKLIITKLAPDDM 142 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 + + +N + + + A L + + Sbjct: 143 WA-------------------MSDFAPTNGVGLHAELIIQFDGFAGRVHLKLDSNLIQTL 183 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + DL PF V ++ + K L D+V+LK G + Sbjct: 184 VEQL------ELQSNTDLYQPFCHSLKSTRVRLNVVLIKKIMPLSDIVSLKPGDIFSIEL 237 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298 + + ++S + + Sbjct: 238 PSDIPISI--GHQPLFSGRIAERDDQLVL 264 >gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K+ L D++ G VI + NG + E+ V Sbjct: 46 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLLGHAEVVVVNDK 105 Query: 296 YTIRITDRINF 306 Y +R+ D + Sbjct: 106 YGLRLIDVHDS 116 >gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180] gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908] gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24] gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571] gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571] Length = 120 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ V + + + +++ L G ++P HR + NG+ I E+ V Sbjct: 38 ESVMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPVDVVVNGRIIARGEVMVV 97 Query: 293 ---GKNYTIRITDRINF 306 + + +T+ + Sbjct: 98 EEDNSRFGVTLTEIVGP 114 >gi|154252628|ref|YP_001413452.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans DS-1] gi|154156578|gb|ABS63795.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans DS-1] Length = 117 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 10/108 (9%), Positives = 38/108 (35%), Gaps = 1/108 (0%) Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 + +P + + + + ++ E + + + VN+ + + +++ Sbjct: 8 VALPDLANIDSLPPAEAGPSEHEEEQVRTAQDL-EAVFDVPVNVSAVLGKTHIEVSNLLK 66 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L G ++ + + N + + E+ V + +T+ + Sbjct: 67 LGRGAIVELDRKVGEAIDIYVNDRLVARGEVVVVDDRLGVTMTEIVKG 114 >gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10] gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10] gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d] gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20] gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464] gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16] gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30] gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57] gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1] gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470] gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470] gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51] gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A] gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695] gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] Length = 131 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-- 292 ++ V + + + D++ L G VIP HR + NG+ + + V Sbjct: 51 ILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVED 110 Query: 293 -GKNYTIRITDRINF 306 + + +T+ + Sbjct: 111 ENSRFGVSLTEIVGG 125 >gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] Length = 151 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 ++Q + +D +Q+ + + ++ +++ K QV+ Sbjct: 57 AANQGGDASILKDWNP-----LHQIKARLQVCVGAVSLSVGELLGAKEHQVLRLDREIDH 111 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITD 302 L+ GK + +L V ++ +RIT+ Sbjct: 112 PVDLTIEGKVVARGQLVAVDGHFAVRITE 140 >gi|147678413|ref|YP_001212628.1| flagellar motor switch/type III secretory pathway protein [Pelotomaculum thermopropionicum SI] gi|146274510|dbj|BAF60259.1| flagellar motor switch/type III secretory pathway protein [Pelotomaculum thermopropionicum SI] Length = 126 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 12/111 (10%) Query: 205 TLLKTTLISLSSQNKSENQSE------------DLIDPFARKTYQLNVNIDTRINLKKTT 252 T + + + + + D + + + I + Sbjct: 3 TEEEIRSFLARASSSDADIKKVQFPPLTPVKGMDRVKTSMSHLEDVQIEISVELGQTVMK 62 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 +++V+ L+ G VI + N + E+ + ++ +RIT Sbjct: 63 VREVLGLEQGSVIRLDKAIGEAVEVVLNEQRFARGEVVVINDSFGVRITSI 113 >gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K+ L D++ G VI + NG + E+ V Sbjct: 46 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDK 105 Query: 296 YTIRITDRINF 306 Y +R+ D + Sbjct: 106 YGLRLIDVHDS 116 >gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1] gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1] Length = 123 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|258624665|ref|ZP_05719600.1| putative flagellar motor switch protein [Vibrio mimicus VM603] gi|258583057|gb|EEW07871.1| putative flagellar motor switch protein [Vibrio mimicus VM603] Length = 267 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 59/209 (28%), Gaps = 33/209 (15%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN--QC 149 F+ N ++I L + GA+ + + L+ + ++ +R I L Sbjct: 87 GGRVFVHADNVVLIKLADRFYGAN----EERDSTKLTNSDLRIQERISKLIITKLAPDDM 142 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 + +P N + + + A L + + Sbjct: 143 W-AISDFAPT------------------NGVGLHAELIIQFDGFAGRVHLKLDSNLIQTL 183 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + DL PF V ++ + K L D+V+LK G + Sbjct: 184 VEQL------ELQSNTDLYQPFCHSLKSTRVRLNVVLIKKIMPLSDIVSLKPGDIFSIEL 237 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298 + + ++S + + Sbjct: 238 PSDIPISI--GHQPLFSGRIAERDDQLVL 264 >gi|217976218|ref|YP_002360365.1| flagellar motor switch protein FliN [Methylocella silvestris BL2] gi|217501594|gb|ACK49003.1| flagellar motor switch protein FliN [Methylocella silvestris BL2] Length = 110 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ V + + + ++ L G VIP HR + NG+ I E+ V Sbjct: 29 ETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVVVNGRIIARGEIVVV 88 Query: 293 ---GKNYTIRITDRINF 306 + + +T+ + Sbjct: 89 EDDNSRFGVSLTEIVGP 105 >gi|319781691|ref|YP_004141167.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167579|gb|ADV11117.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 128 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 39/108 (36%), Gaps = 3/108 (2%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + + + + + + + V+I + + + D++ L+ G Sbjct: 19 RAIEELRGVLHEEEQRPDAAFRAASSANSSVIMNIPVDIQIILGSTEMPVSDLMALQKGS 78 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVG---KNYTIRITDRINFDQ 308 + R + NG++I E+ + + IR+T+ I + Sbjct: 79 TVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEIIAGTK 126 >gi|258622511|ref|ZP_05717533.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|258624666|ref|ZP_05719601.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|262173377|ref|ZP_06041054.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] gi|258583058|gb|EEW07872.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|258585211|gb|EEW09938.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|261890735|gb|EEY36722.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] Length = 123 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K+ TL +++ G VI + NG + E+ V Sbjct: 45 KGIPVVVTLEVASKEITLGELMKAGEGTVIELDKLNGEPLDVKVNGSLMGHAEIVIVNDK 104 Query: 296 YTIRITDRINF 306 Y + +TD ++ Sbjct: 105 YGLHLTDVLSS 115 >gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis ATCC 21756] gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis ATCC 21756] Length = 83 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + +NV I + ++ ++ + G VIP + + AN I E+ Sbjct: 1 MTQVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60 Query: 292 VGKNYTIRITD 302 I++T Sbjct: 61 SDDRIAIQVTR 71 >gi|254503358|ref|ZP_05115509.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] gi|222439429|gb|EEE46108.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] Length = 130 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 3/83 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + VNI + + +++ L G VIP HR + NG+ I E+ V Sbjct: 47 DTILGIPVNIQVVLGSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVV 106 Query: 293 ---GKNYTIRITDRINFDQKSLK 312 + + +T+ I+ L+ Sbjct: 107 EDDNSRFGVSLTEIISSQTSPLE 129 >gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3] gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3] Length = 122 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K+ L D++ G VI + NG + E+ + Sbjct: 45 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104 Query: 296 YTIRITDRINF 306 Y +R+ + + Sbjct: 105 YGLRLINVHDS 115 >gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter alkaliphilus AHT 1] gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter alkaliphilus AHT 1] Length = 150 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V +D + T+++++ L+ +I A L NGK + S E+ + N Sbjct: 72 ESVPVTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVINDN 131 Query: 296 YTIRITDR 303 + R+ + Sbjct: 132 FGFRVAEV 139 >gi|170741400|ref|YP_001770055.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] gi|168195674|gb|ACA17621.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] Length = 125 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ V I + + +++ L G ++P HR + NG+ I E+ V Sbjct: 43 DSVLRIPVLIQVVLGSATMPVANLMKLGRGAIVPLDHRVGEPVDIMVNGRVIARGEVVVV 102 Query: 293 ---GKNYTIRITDRINF 306 + + +T+ + Sbjct: 103 EEDNSRFGVSLTEIVGP 119 >gi|171323088|ref|ZP_02911720.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171091517|gb|EDT37147.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 193 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 10/192 (5%) Query: 111 LLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK 170 + A+ + +++ L + + +E + + Sbjct: 1 MFFATPAATRADTRAAYASLPVPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNL 59 Query: 171 KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP 230 R+ I + + + +P L T + S+ + + Sbjct: 60 LCVARVPAAPAWEITGRPSGNRLTVERIREMP---LEPTRTDTPSATTHDASADDA---- 112 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCEL 289 R L V++ + L ++ L+ G VI L ANG I + +L Sbjct: 113 -PRSLDGLAVDLRFELPPTSIPLGELGALQPGAVIELQQGINQSVIHLVANGMLIGTGQL 171 Query: 290 GRVGKNYTIRIT 301 VG+ +R+ Sbjct: 172 IAVGQKLGVRVV 183 >gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818] gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG 18818] gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG 18818] Length = 116 Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 28/73 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K L +++ + G +I NG+ I E+ + Sbjct: 34 LLDMEVIFNAELGNTKIALGEILRFEKGSIIDLGKPAGESIETFINGRVIGKGEVMVYER 93 Query: 295 NYTIRITDRINFD 307 N IRI + ++ + Sbjct: 94 NLAIRINEILDSN 106 >gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31] gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp. K31] Length = 83 Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + +NV I + ++ ++ + G VIP + + AN I E+ Sbjct: 1 MSQVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60 Query: 292 VGKNYTIRITD 302 I++T Sbjct: 61 SDDRIAIQVTR 71 >gi|21672366|ref|NP_660433.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008469|sp|Q8KA38|FLIN_BUCAP RecName: Full=Flagellar motor switch protein FliN gi|21622971|gb|AAM67644.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 133 Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + + +NI + K +KD++ G ++ +++ + AN K I E+ Sbjct: 51 KKILFDIEMNITVELGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVF 110 Query: 292 VGKNYTIRITDR 303 Y IRI Sbjct: 111 SNNKYGIRIISI 122 >gi|310823556|ref|YP_003955914.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella aurantiaca DW4/3-1] gi|309396628|gb|ADO74087.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella aurantiaca DW4/3-1] Length = 379 Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 26/276 (9%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R LG++ + ++ + L + + ++ K Sbjct: 22 LTRAHVVLGERPQVSRMGQQALQSICESLGRELGCDVSAASHVAEAVVVPAK------GL 75 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + VF LS+ + + ++ LE L G P L+ +E+ Sbjct: 76 SLSAVFVFLELSATGGSAVLELEPPVLFAALERLAGGPARPGPMT---RLTRLEEASLAY 132 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 + + P L ++ + + + + +++ + Sbjct: 133 LVLAALMAFRTQGELQRWWGPRLAGM-TVNRMDALARLDGRKAHLGVELVLSVGQRTAGA 191 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 L++P L T ++ S + ++ + ++ ++ Sbjct: 192 RLVLPAVVLESTCRKLPVQRDSSRAP----------EILAASLGARCFLGCRQLLPSELE 241 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 TL +G V+ F L+ G L G Sbjct: 242 TLAVGDVVVF-----EGVRLT-GGAPRGPGRLVTRG 271 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V ++ + L ++ TL+ GQ++P +L + + EL + Sbjct: 313 PVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELVDIDGEIGA 372 Query: 299 RITDRIN 305 RI + Sbjct: 373 RILSLLP 379 >gi|148260473|ref|YP_001234600.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5] gi|146402154|gb|ABQ30681.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5] Length = 132 Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 3/104 (2%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L +S + D Y + V + + + ++ L G V+ Sbjct: 30 LPLAPVSRRTAGDGPETQRPSRDL--EAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVE 87 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGK-NYTIRITDRINFDQK 309 + + N + I E+ + + I +T+ + D+ Sbjct: 88 LDRKAGDPIDIFVNNRLIARGEVVMLDETKLGITMTEIVKSDRN 131 >gi|288962690|ref|YP_003452984.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] gi|288914956|dbj|BAI76440.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] Length = 112 Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 9/80 (11%), Positives = 28/80 (35%), Gaps = 1/80 (1%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 Y + V++ + + ++ L G V+ + + N + + E+ Sbjct: 32 MNAIYNVPVDVQVVLGRTSMLVAQLLKLGRGAVLELERKVDEPVEVLVNHRLVARGEVVI 91 Query: 292 VGK-NYTIRITDRINFDQKS 310 V + +T+ + + + Sbjct: 92 VEDQRLGVTLTEIVRTELEI 111 >gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion translocase SctQ) [Candidatus Protochlamydia amoebophila UWE25] Length = 445 Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 34/67 (50%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 Q+ VN+ + + ++ ++ L+ G ++ + + L+ NGK + EL R+G+ Sbjct: 376 NQIPVNLTVEVGRIQMSMDHLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEV 435 Query: 296 YTIRITD 302 +R+ + Sbjct: 436 LGVRVLE 442 >gi|171320709|ref|ZP_02909722.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171094036|gb|EDT39134.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 272 Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 66/236 (27%), Gaps = 22/236 (9%) Query: 83 FSQASLSSWSSNFFI-GCSNNLVIT----LLENLLGASHETIPQLYNRSLSTVE--KKLA 135 + + WSS + C +L +L+ L + + + + + + + Sbjct: 47 IAPLAPPPWSSAAHVWSCGPHLQWATEPRMLDRL---ARRALDLPDDFAATPADHCADVL 103 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 + ++ + +S D + S + + + N Sbjct: 104 RAFGKSMTDDMAAALSAICG--AAAPDARRLPQSDAAKPLASRYGGVHVRLVLGPSNARL 161 Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 S + P + ++ + ++ + R+ + + + Sbjct: 162 SVLFAAPFWWARHVRRDAAPTRANTLTPRTAALESIRTRV-------CARLGVVELPVAQ 214 Query: 256 VVTLKIGQVIPFLHREKTCAILSANG---KEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ L G V+ + L + LGR + +I++ + Sbjct: 215 LLDLMPGDVLVIAEQLDPVVSLVTGNTGQVPVGFGRLGRTDRQLSIQLQSLVEPKD 270 >gi|170750204|ref|YP_001756464.1| surface presentation of antigens (SPOA) protein [Methylobacterium radiotolerans JCM 2831] gi|170656726|gb|ACB25781.1| surface presentation of antigens (SPOA) protein [Methylobacterium radiotolerans JCM 2831] Length = 122 Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V++ + + L ++ + G VI + + AN I ++ G ++ Sbjct: 29 KVDLTVVLGRARMPLHMLLRMGRGAVIELEASDSDMVEILANDHPIARGQIVVTGDRISV 88 Query: 299 RITDRINFDQKSLK 312 +T+ I ++ Sbjct: 89 EVTELIRKAASIVE 102 >gi|167949199|ref|ZP_02536273.1| flagellar motor switch protein FliM [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 111 Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 9/80 (11%), Positives = 26/80 (32%), Gaps = 3/80 (3%) Query: 206 LLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + + Q+ + E + + + + + TL+++ L G + Sbjct: 1 MEPIRELLDAGVQSDRGERDERWERSLREEILGAKIELKSILTETCVTLRELSKLDKGDI 60 Query: 265 IPFLHREKTCAILSANGKEI 284 IP ++A + Sbjct: 61 IPIELP--EEVEVTAAEVPV 78 >gi|260893866|ref|YP_003239963.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii KC4] gi|260866007|gb|ACX53113.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii KC4] Length = 114 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 30/76 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + T+++++ L+ G VI L +G++ E+ + Sbjct: 28 ELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAGEAVDLLLDGQKFGRGEVMVL 87 Query: 293 GKNYTIRITDRINFDQ 308 + + +R+ + Sbjct: 88 NERFVVRVLQVFPPQE 103 >gi|118589948|ref|ZP_01547352.1| probable flagellar motor switch protein [Stappia aggregata IAM 12614] gi|118437445|gb|EAV44082.1| probable flagellar motor switch protein [Stappia aggregata IAM 12614] Length = 130 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + VNI + + +++ L G VIP HR + NG+ I E+ V Sbjct: 47 DTILGIPVNIQVVLGSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVV 106 Query: 293 ---GKNYTIRITDRINFD 307 + + +T+ I+ Sbjct: 107 EDDNSRFGVSLTEIISAQ 124 >gi|153003619|ref|YP_001377944.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. Fw109-5] gi|152027192|gb|ABS24960.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. Fw109-5] Length = 334 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 68/261 (26%), Gaps = 49/261 (18%) Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L + + LV+ L++ L G E + L++VE + Sbjct: 74 VDLPALPGTASVEVEPALVVALVDRLAGGKGEALGATS---LTSVESAALELFALAALDG 130 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNT--------------NRLSNEFVTTINMNMTIE 191 Q + + SP L L V + + Sbjct: 131 ACQLAAVEETLSPRLCRATPEPSAALAVELTLTAGELSGRARLLLPAAAVRALRGAPAFD 190 Query: 192 NVASSFVLII------------------------------PQETLLKTTLISLSSQNKSE 221 A+ L+ P+ +L Sbjct: 191 GDAAGIGLVASVRGGAAALRTEELEALAAGDVVVLDGGAGPRALVLPGGARLSGRHED-- 248 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 ++ QL V ++ + + TL ++ L+ G ++P + L A Sbjct: 249 GTFHVEEIEMTQRMAQLPVVLEVELARVEVTLAELARLEPGGILPLALDRRGLVTLRAGE 308 Query: 282 KEIYSCELGRVGKNYTIRITD 302 + + EL V +RI D Sbjct: 309 RAVARGELVDVDGAVGVRIID 329 >gi|209963529|ref|YP_002296444.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|209956995|gb|ACI97631.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 119 Score = 62.7 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R + + VN+ + + ++ L G V+ + + N + I E+ V Sbjct: 40 RAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIARGEVVIV 99 Query: 293 -GKNYTIRITDRINFD 307 + +T+ + + Sbjct: 100 DDGRLGVTMTEIVKAE 115 >gi|213023115|ref|ZP_03337562.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 67 Score = 62.7 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 3 LRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 56 >gi|330963707|gb|EGH63967.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 356 Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%) Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 L + + ++ + TL + + G ++P L NG+ I +L Sbjct: 281 LDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGRGQLV 340 Query: 291 RVGKNYTIRI 300 +G +R+ Sbjct: 341 SIGDGLGVRL 350 >gi|149189861|ref|ZP_01868141.1| flagellar motor switch protein [Vibrio shilonii AK1] gi|148836347|gb|EDL53304.1| flagellar motor switch protein [Vibrio shilonii AK1] Length = 122 Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K+ L D+++ G +I + NG + E+ V + Sbjct: 45 KNIPVTVTLEVASKEVALGDLMSAGEGSIIELDKLNGEPLDVKVNGSLMGHAEVVVVNEK 104 Query: 296 YTIRITDRINF 306 Y +R+ D ++ Sbjct: 105 YGLRLIDVVDS 115 >gi|330876195|gb|EGH10344.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 356 Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%) Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 L + + ++ + TL + + G ++P L NG+ I +L Sbjct: 281 LDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGRGQLV 340 Query: 291 RVGKNYTIRI 300 +G +R+ Sbjct: 341 SIGDGLGVRL 350 >gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 101 Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 7/100 (7%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L + + Q+ + + V + ++ ++ ++ LK G V Sbjct: 9 ELEEARVAVNDGQSPLIKRD-------MNLIKHVVVELVVQLGHASMSVDELFALKAGDV 61 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + L + A L +GK + L V N+ I++T+ + Sbjct: 62 VKLLEQVHEPASLCLDGKPVARGNLVAVDDNFGIQLTEIL 101 >gi|222147562|ref|YP_002548519.1| flagellar motor switch protein FliN [Agrobacterium vitis S4] gi|221734550|gb|ACM35513.1| flagellar motor switch protein FliN [Agrobacterium vitis S4] Length = 220 Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 7/78 (8%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + + ++ L+ G +I + + NG+ I E+ + Sbjct: 141 DLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVEIMVNGRRIARGEITVL 200 Query: 293 GK---NYTIRITDRINFD 307 + +++ + ++ Sbjct: 201 ENDDTRFGVKLIEVMSTK 218 >gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis Ellin345] gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis Ellin345] Length = 252 Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 24/269 (8%), Positives = 59/269 (21%), Gaps = 28/269 (10%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 + + + E+ + + S F Sbjct: 5 EHFFEQWAGAICDTLRPITGKPWTSRVNKADELGAGD-----TESIFLTFSVSEPLSGMF 59 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 S + + L L S + +++ Q + + Sbjct: 60 RSALSRSAALQL-NFLFTGSESSEWNTE-------QQETIDELSRQFAGQFAAALKPELG 111 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + + + + V L L Sbjct: 112 ----EVHLELQKDAPFTGSGDGYRLALSQADGIELFAV----------LELDDALRKKLQ 157 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNI-DTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + + + R ++ L+D++ L+ G V+ + Sbjct: 158 PDPAAVSADNHSVQSTNLDLLLDVELDVTLRFGQREMLLQDILELQSGSVVELDREIQDP 217 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR 303 L +G+ I + V NY +R+ + Sbjct: 218 VELLLDGRVIARGSVVVVDGNYGLRVAEV 246 >gi|256158145|ref|ZP_05456061.1| Flagellar motor switch FliN protein [Brucella ceti M490/95/1] gi|256252904|ref|ZP_05458440.1| Flagellar motor switch FliN protein [Brucella ceti B1/94] gi|261219992|ref|ZP_05934273.1| flagellar motor switch protein FliN [Brucella ceti B1/94] gi|265996663|ref|ZP_06109220.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1] gi|260918576|gb|EEX85229.1| flagellar motor switch protein FliN [Brucella ceti B1/94] gi|262550960|gb|EEZ07121.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1] Length = 98 Score = 62.7 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 3/94 (3%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 ++ + + P + V++ + + ++ L G VI + Sbjct: 5 ARKSHAARKKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPV 64 Query: 276 ILSANGKEIYSCELGRVGK---NYTIRITDRINF 306 + NG+ I E+ + + + +T+ I Sbjct: 65 DIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 98 >gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018] gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22] gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018] gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22] Length = 95 Score = 62.7 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 9/80 (11%), Positives = 30/80 (37%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + + +D + ++ + + L G +I + + N + I + Sbjct: 4 SERVYDLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRIIGTG 63 Query: 288 ELGRVGKNYTIRITDRINFD 307 ++ + + +R+ D ++ D Sbjct: 64 DIIVIDEKLAVRVQDAMDSD 83 >gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] Length = 123 Score = 62.7 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIIFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|1399288|gb|AAB03253.1| FliM [Treponema phagedenis] Length = 110 Score = 62.3 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 6/63 (9%), Positives = 17/63 (26%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K + S + + + ++ V + S + I S + + Sbjct: 48 SKEQMRTLSLMHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPTTIAVIN 107 Query: 88 LSS 90 + Sbjct: 108 MDP 110 >gi|331005447|ref|ZP_08328826.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989] gi|330420723|gb|EGG95010.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989] Length = 104 Score = 62.3 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 29/69 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + + + + + ++T+K G V+ + + NGK + + V Sbjct: 34 LKDLKIKMQVSLGETEIQVDKLMTMKEGSVVKLDREANSPLDIFINGKLVARGVMVVVDD 93 Query: 295 NYTIRITDR 303 ++ ++IT+ Sbjct: 94 DFGVQITEI 102 >gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum lavamentivorans DS-1] gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum lavamentivorans DS-1] Length = 78 Score = 62.3 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 26/77 (33%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V + + + ++ + G VI R+ + AN I E+ Sbjct: 1 MNSVNNVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIV 60 Query: 292 VGKNYTIRITDRINFDQ 308 G+ + IT + + Sbjct: 61 QGERVAVSITTVLAGGE 77 >gi|260767961|ref|ZP_05876895.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|260615991|gb|EEX41176.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|315179665|gb|ADT86579.1| Flagellar motor switch/type III secretory pathway protein [Vibrio furnissii NCTC 11218] Length = 122 Score = 62.3 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + V + + K L +++ G VI + NG + E+ V Sbjct: 45 RNIPVTVTLEVASKAIALGELMKAGEGSVIELDKLNGEPLDVKVNGALLGHAEVVVVNDK 104 Query: 296 YTIRITDRINF 306 Y +R+ D ++ Sbjct: 105 YGLRLIDVLDS 115 >gi|86356303|ref|YP_468195.1| flagellar motor switch protein [Rhizobium etli CFN 42] gi|86280405|gb|ABC89468.1| flagellar motor switch protein [Rhizobium etli CFN 42] Length = 214 Score = 62.3 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + + ++ L G I + + NG+ I E+ + Sbjct: 135 ELIMDIPIDVQIMLGTSRMQVSSLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 194 Query: 293 GK---NYTIRITDRINFDQ 308 + +++ + ++ + Sbjct: 195 DNDDTRFGVKLIEVLSTKK 213 >gi|22127343|ref|NP_670766.1| flagellar switch protein [Yersinia pestis KIM 10] gi|45442781|ref|NP_994320.1| flagellar switch protein [Yersinia pestis biovar Microtus str. 91001] gi|51597652|ref|YP_071843.1| flagellar switch protein [Yersinia pseudotuberculosis IP 32953] gi|108809074|ref|YP_652990.1| flagellar switch protein [Yersinia pestis Antiqua] gi|108810733|ref|YP_646500.1| flagellar switch protein [Yersinia pestis Nepal516] gi|145597802|ref|YP_001161878.1| flagellar switch protein [Yersinia pestis Pestoides F] gi|150260264|ref|ZP_01916992.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis CA88-4125] gi|165925127|ref|ZP_02220959.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165939068|ref|ZP_02227620.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|166008730|ref|ZP_02229628.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166212179|ref|ZP_02238214.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|167399118|ref|ZP_02304642.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419195|ref|ZP_02310948.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425214|ref|ZP_02316967.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466356|ref|ZP_02331060.1| flagellar switch protein [Yersinia pestis FV-1] gi|170022956|ref|YP_001719461.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186896786|ref|YP_001873898.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] gi|218927897|ref|YP_002345772.1| flagellar switch protein [Yersinia pestis CO92] gi|229837393|ref|ZP_04457556.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A] gi|229840606|ref|ZP_04460765.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842843|ref|ZP_04462995.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. India 195] gi|229900930|ref|ZP_04516054.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516] gi|270487689|ref|ZP_06204763.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|294502774|ref|YP_003566836.1| flagellar switch protein [Yersinia pestis Z176003] gi|21960426|gb|AAM87017.1|AE013950_2 hypothetical [Yersinia pestis KIM 10] gi|45437647|gb|AAS63197.1| flagellar switch protein [Yersinia pestis biovar Microtus str. 91001] gi|51590934|emb|CAH22590.1| Flagellar switch protein [Yersinia pseudotuberculosis IP 32953] gi|108774381|gb|ABG16900.1| flagellar switch protein [Yersinia pestis Nepal516] gi|108780987|gb|ABG15045.1| flagellar switch protein [Yersinia pestis Antiqua] gi|115346508|emb|CAL19384.1| flagellar switch protein [Yersinia pestis CO92] gi|145209498|gb|ABP38905.1| flagellar switch protein [Yersinia pestis Pestoides F] gi|149289672|gb|EDM39749.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis CA88-4125] gi|165913024|gb|EDR31649.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|165923327|gb|EDR40478.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165992069|gb|EDR44370.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166206925|gb|EDR51405.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|166963189|gb|EDR59210.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051622|gb|EDR63030.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055977|gb|EDR65758.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749490|gb|ACA67008.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186699812|gb|ACC90441.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] gi|229682269|gb|EEO78361.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516] gi|229690110|gb|EEO82167.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. India 195] gi|229696972|gb|EEO87019.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705516|gb|EEO91526.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A] gi|262360806|gb|ACY57527.1| flagellar switch protein [Yersinia pestis D106004] gi|262364751|gb|ACY61308.1| flagellar switch protein [Yersinia pestis D182038] gi|270336193|gb|EFA46970.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|294353233|gb|ADE63574.1| flagellar switch protein [Yersinia pestis Z176003] gi|320016726|gb|ADW00298.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 137 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 28/85 (32%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + D ++ V + + + L +++T+ VI + Sbjct: 43 EKTATKTDEQKRKMSLFSRIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIR 102 Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303 NG E+ + + Y +RI + Sbjct: 103 VNGIMFGQAEVVVINEKYGLRIINI 127 >gi|326403666|ref|YP_004283748.1| flagellar motor switch protein FliN [Acidiphilium multivorum AIU301] gi|325050528|dbj|BAJ80866.1| flagellar motor switch protein FliN [Acidiphilium multivorum AIU301] Length = 106 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 3/104 (2%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L +S + D Y + V + + + ++ L G V+ Sbjct: 4 LPLAPVSRRTAGDGPETQRPSRDL--EAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVE 61 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGK-NYTIRITDRINFDQK 309 + + N + I E+ + + I +T+ + D+ Sbjct: 62 LDRKAGDPIDIFVNNRLIARGEVVMLDETKLGITMTEIVKSDRN 105 >gi|327478783|gb|AEA82093.1| flagellar motor switch protein FliN [Pseudomonas stutzeri DSM 4166] Length = 123 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ VN+ + + +LK+++ VI + NG E+ + NY Sbjct: 47 KIPVNVTLEVASAEISLKELMECDTSSVIVLDKLAGEPLDVKVNGTLFAKAEVVVMNGNY 106 Query: 297 TIRITD 302 +RI + Sbjct: 107 GLRIVE 112 >gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces limnophilus DSM 3776] gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces limnophilus DSM 3776] Length = 396 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 13/155 (8%), Positives = 54/155 (34%), Gaps = 5/155 (3%) Query: 155 ESSPNLEDFYDIDY-LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 E + +L + ++ ++++ S++ + Q+ + ++ Sbjct: 238 EWEEASANLETERRQNSSAERQLPDSQTAVAPVDSPVDDLLSNYEGLAAQDPMESAAPLA 297 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + V + R+ K+ L ++ L G ++ F + Sbjct: 298 QETMPQQSVT----SQLMLQRLSGVRVQLSVRLAEKRMPLAALLQLSPGALVTFSKPCED 353 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + ++ E ++G+++ +++ + Sbjct: 354 LLDIYIGNRQYAQGEAVKIGEHFGVKVNRLGPPPE 388 >gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium sp. 4-46] gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium sp. 4-46] Length = 101 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +L V++ + + + ++ + G VI + + AN I ++ G Sbjct: 4 LEELKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVVTGN 63 Query: 295 NYTIRITDRINFDQ 308 ++ +T+ I Sbjct: 64 RISVEVTELIRKAD 77 >gi|296534812|ref|ZP_06897160.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] gi|296264860|gb|EFH11137.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] Length = 110 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 Y + V + + + ++ L G V+ + + N + + E+ V Sbjct: 32 NAVYDIPVQVSAVLGRATMQVSQLLKLGRGAVVELDRKLGEAVDIYVNNRLVARGEVVMV 91 Query: 293 GKNY-TIRITDRINFDQ 308 G+N + +T+ + D+ Sbjct: 92 GENRLGVTMTEIVKTDR 108 >gi|153949693|ref|YP_001399619.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|152961188|gb|ABS48649.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] Length = 137 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 28/85 (32%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + D ++ V + + + L +++T+ VI + Sbjct: 43 EKTATKTDEQKRKMSLFSRIPVTLTLEVASVELPLSELLTVNNDSVIELDKLAGEPLDIR 102 Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303 NG E+ + + Y +RI + Sbjct: 103 VNGIMFGQAEVVVINEKYGLRIINI 127 >gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 128 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 31/73 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + ++ ++ LK++++++ VI +E + NG + + Sbjct: 53 IRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNIIIQDG 112 Query: 295 NYTIRITDRINFD 307 Y +++ +N + Sbjct: 113 KYGVQVLALVNNE 125 >gi|197121157|ref|YP_002133108.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. K] gi|196171006|gb|ACG71979.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. K] Length = 324 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 29/268 (10%), Positives = 66/268 (24%), Gaps = 46/268 (17%) Query: 75 HSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS------- 126 ++ V L + + LV+ +++ + G P Sbjct: 54 RAWPRPAVARIALDLPALPGTAILEVEPALVVRVVDRMAGGDGAPAPAASLTPVEATALE 113 Query: 127 ------------LSTVEKKLAKRTIAQISAVLNQCISTTQESS----------------- 157 ++ +E++L+ R A + E Sbjct: 114 LLALAALDGACGVAELEERLSPRLAR---ADAEPAGALAVELEVTAGPARGRARLLLPPA 170 Query: 158 --PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI--- 212 L ++D + + +++ P ++ Sbjct: 171 AVRALRGPAELDRQLPVPGSVRRGRAALTAAELDALE-PGDVLVVDPPADGRDALVLPGG 229 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + A + QL V ++ + L +V L+ G V+ + Sbjct: 230 LRALGRIDGEGFHVEETEMAERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRR 289 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300 L + + EL V +RI Sbjct: 290 GLVTLRLGERAVARGELVDVEGAVGVRI 317 >gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] Length = 321 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 17/195 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 L+ LE G + + +ST E+++ R +S + + I Sbjct: 124 GKVGFAIDRALLTEALECYYGGTCLPNHEAP--PVSTSEQRMRTRLGLDVSQLFARSILA 181 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 Q + E+V + I +S + + + + + T Sbjct: 182 GQTFGKLEPYDNAYEEATW-------EYVAEFHFTSHITGSQASIFIYLDTQLVDELTNR 234 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +++ + + QL V +D + + L V+ L+ G ++P Sbjct: 235 LTPPAPVAQSGNSL------NQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPMRLL-- 286 Query: 273 TCAILSANGKEIYSC 287 + N ++++ Sbjct: 287 ERCDVQINQQKLFRG 301 >gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 80 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++++I I K TL ++ LK G +I F + + + NG++ EL V Sbjct: 9 EDFKDVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKFGIGELVIV 68 Query: 293 GKNYTIRITDRI 304 Y++R+ D + Sbjct: 69 NDKYSLRLVDLV 80 >gi|120597291|ref|YP_961865.1| hypothetical protein Sputw3181_0460 [Shewanella sp. W3-18-1] gi|146294564|ref|YP_001184988.1| hypothetical protein Sputcn32_3479 [Shewanella putrefaciens CN-32] gi|120557384|gb|ABM23311.1| conserved hypothetical protein [Shewanella sp. W3-18-1] gi|145566254|gb|ABP77189.1| conserved hypothetical protein [Shewanella putrefaciens CN-32] Length = 293 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 60/211 (28%), Gaps = 19/211 (9%) Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158 + L N G S T R S E +LA++ + + L T Sbjct: 98 IDRCTLDQLASNYYG-SMSTPLNSPLRDPSQSEFRLARKLLLSVVDKLPNNTIDTSALEV 156 Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 L + + N + E+ + + + L L+ Q Sbjct: 157 ELIKGQMELAVS-----------AVWSFNFSQESQTPPMLFCLT-----EHLLGHLAEQP 200 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 K S DL A L V I + + + L G ++P KT + Sbjct: 201 KKSEVSADLPAKLAIWLKNLPVKIQVTLGQHNIPVHSLGQLNTGDILPINLYPKTLLSI- 259 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ++ + ++T + ++ Sbjct: 260 -GSTPLFHATVHSHEGLMVAKLTQDVYQYEE 289 >gi|220926099|ref|YP_002501401.1| surface presentation of antigens (SPOA) protein [Methylobacterium nodulans ORS 2060] gi|219950706|gb|ACL61098.1| surface presentation of antigens (SPOA) protein [Methylobacterium nodulans ORS 2060] Length = 101 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V++ + + + ++ + G VI + + AN I ++ G Sbjct: 4 LEDLKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDTDMVEILANDHPIARGQIVVTGN 63 Query: 295 NYTIRITDRINFDQ 308 ++ +T+ I + Sbjct: 64 RISVEVTELIRKAE 77 >gi|163758005|ref|ZP_02165093.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43] gi|162284294|gb|EDQ34577.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43] Length = 241 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++ + + + ++ L G I + + NGK I E+ + Sbjct: 159 DLVMGIPVDVQIILGSSRMAVSSLMELSEGATIALDRKIGEPVEIMVNGKMIGRGEITVL 218 Query: 293 GK---NYTIRITDRINFDQ 308 + +RI + I Q Sbjct: 219 DSDDTKFAVRIIEVIGAPQ 237 >gi|260779321|ref|ZP_05888213.1| putative flagellar motor switch protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605485|gb|EEX31780.1| putative flagellar motor switch protein [Vibrio coralliilyticus ATCC BAA-450] Length = 271 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 85/266 (31%), Gaps = 44/266 (16%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L K + +I+ S + S + + S FI + +I Sbjct: 46 LQNWLKTH-HAEANINLVSLHTFTPSEM-----DKSFISTFRHDG-GGRVFIHTDSQTLI 98 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDF 163 L ++ + + + SL+ + +L ++ I L + S E P Sbjct: 99 KLADSFY----DAKMERSHTSLNNSDLRLQEKIGRLIINWLAPEEMWSD-CEFEP----- 148 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223 + +++ + + + + L L++ ++ Sbjct: 149 -------------AQGTGLYATIDVNLNDHQGTIHV------KLDELLVATLTEQLDLQP 189 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 E + +PF + V ++ ++ K L ++++L+ V+P + + Sbjct: 190 KESMYEPFCQSLASTPVKLNVLLSKKTMPLSELISLQPNDVLPIELLSSAPVSI--GQEH 247 Query: 284 IYSCELGRVGKNYTIRITDRINFDQK 309 ++S + + +N D++ Sbjct: 248 LFSGRVAENDGQLVL----ILNQDKE 269 >gi|294678996|ref|YP_003579611.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB 1003] gi|294477816|gb|ADE87204.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB 1003] Length = 90 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GR 291 Q+ + I + + ++D++ +K ++P R + L K I EL G Sbjct: 12 SQVPIEITISVGKARPLVRDLLRMKRDSILPLDRRVEDPVELYVGDKLIARGELTEMEGD 71 Query: 292 VGKNYTIRITDRIN 305 +R+T+ ++ Sbjct: 72 SNGQLAVRLTEVVD 85 >gi|170698146|ref|ZP_02889225.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria IOP40-10] gi|170136911|gb|EDT05160.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria IOP40-10] Length = 309 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 3/125 (2%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 + V ++ + L T + + + ++D A + L Sbjct: 182 DAVLIETISPEM--RVGEQQLCE-ISIEGNTMTMHEQASEMRGDSQPGMMDGQAFQVDAL 238 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V ++ ++ T+ DV L G V+P + + ANG+ + EL +VG+ + Sbjct: 239 PVKLEFAFRQRELTVADVARLHPGAVLPLDAGAEHEVKIYANGRYLALGELIQVGERLAV 298 Query: 299 RITDR 303 I Sbjct: 299 EIQSI 303 >gi|220915858|ref|YP_002491162.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter dehalogenans 2CP-1] gi|219953712|gb|ACL64096.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter dehalogenans 2CP-1] Length = 324 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/265 (11%), Positives = 69/265 (26%), Gaps = 40/265 (15%) Query: 75 HSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS------- 126 ++ V L + + LV+ +++ + G P Sbjct: 54 RAWPRPAVARIALDLPALPGTAILEVEPALVVRVVDRMAGGDGAPAPAASLTPVEVTALE 113 Query: 127 ------------LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN 174 ++ +E++L+ R + ++ E + L Sbjct: 114 LLALAALDGACGVAELEERLSPRLARADAEP-AGALAVELEVTAGPARGRARLLLPPAAV 172 Query: 175 RL---SNEFVTTINM--NMTIENV-----------ASSFVLIIPQETLLKTTLI---SLS 215 R E + M ++ +++ P ++ + Sbjct: 173 RALRGPAELDRQLPMPGSVRRGRAALTAAELDALEPGDVLVVDPPADGRDALVLPGGLRA 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 A + QL V ++ + L +V L+ G V+ + Sbjct: 233 LGRIDGEGFHVEETEMAERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLV 292 Query: 276 ILSANGKEIYSCELGRVGKNYTIRI 300 L + I EL V +RI Sbjct: 293 TLRLGERAIARGELVDVEGAVGVRI 317 >gi|237800782|ref|ZP_04589243.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023640|gb|EGI03697.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 353 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%) Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 L + + ++ + TL + + G ++P L NG+ + EL Sbjct: 278 LDTSLDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLAHDEVDLMVNGRRVGRGELV 337 Query: 291 RVGKNYTIRI 300 +G +R+ Sbjct: 338 TIGDGLGVRL 347 >gi|162419818|ref|YP_001604860.1| flagellar switch protein [Yersinia pestis Angola] gi|162352633|gb|ABX86581.1| flagellar motor switch protein FliN [Yersinia pestis Angola] Length = 137 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 28/85 (32%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + D ++ V + + + L +++T+ VI + Sbjct: 43 EKTATKTDEQKRKMSLFSRIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIQ 102 Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303 NG E+ + + Y +RI + Sbjct: 103 VNGIMFGQAEVVVINEKYGLRIINI 127 >gi|149177723|ref|ZP_01856323.1| probable flagellar motor switch protein fliN [Planctomyces maris DSM 8797] gi|148843373|gb|EDL57736.1| probable flagellar motor switch protein fliN [Planctomyces maris DSM 8797] Length = 295 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/287 (11%), Positives = 85/287 (29%), Gaps = 43/287 (14%) Query: 45 FLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104 L F + D + + +F+ + + + + I S L Sbjct: 22 ALADSFNQCFDYQYRLEMGESGVWSPEELEEAFQGPGLVTLVRIGGEAMVGLIPASLPL- 80 Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 + + + S ++ + ++ I L E D Sbjct: 81 -----------PDWYSEPGDSQTSRLQTLALEWSMNLIPMDL----GDVDEFKTYFVDSL 125 Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASS-------FVLIIPQE---TLLKTTLISL 214 + T +E+ + +++ S +I P + Sbjct: 126 LSE----VTACAPSEWAALMRIHLFSSEEESDGQSPSAVIPVIWPLTKPPVTESVEPEAD 181 Query: 215 SSQNKSENQSEDLIDPFAR------------KTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + S + + + + +L V ++ KK + ++++ G Sbjct: 182 PAPQPSPSSTPQATPQMVQATPANSNRNPLNRISKLPVQAIVKLASKKIEMNQLLSICPG 241 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +I F + L N + E ++G+++ ++I DR+ F ++ Sbjct: 242 SLITFDKPCEDPLELYINNQVYCLGEAVKIGEHFGLKI-DRVGFKEE 287 >gi|283834474|ref|ZP_06354215.1| flagellar motor switch protein [Citrobacter youngae ATCC 29220] gi|291070021|gb|EFE08130.1| flagellar motor switch protein [Citrobacter youngae ATCC 29220] Length = 287 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 61/208 (29%), Gaps = 14/208 (6%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + L++ LL N G + + L + E +L R IS ++ Sbjct: 76 GHLAFDIDRALLLMLLGNFYGLTSSLADEKSQDDLPTKTETRLRSRLALDISNIIFN--K 133 Query: 152 TTQESSPNLEDFYDIDYLK---KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 L+ + T L +E + + + + LI + Sbjct: 134 NISGIPLTLKPDSSTVQTHWAYQLTFVLGDEENCSFRILLDDSHTDYILNLI------RR 187 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + Q + + L + ++ +I + D+ T+K G ++P Sbjct: 188 SEHGEKKKQIDKASAEARKKTLIKEIIHTLPLTMNVKIAEIPLNVADLTTIKPGDILPIA 247 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 + + E+++ + Sbjct: 248 MPDTFP--VYIGKSELFNALIVEDKDKL 273 >gi|115379115|ref|ZP_01466239.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|115363898|gb|EAU63009.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] Length = 342 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/262 (11%), Positives = 72/262 (27%), Gaps = 30/262 (11%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 ++ S+ + L + + + + VF LS+ Sbjct: 3 QQALQSICESLGRELGCDVSAASHVAEAVVVPA----------KGLSLSAVFVFLELSAT 52 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + ++ LE L G P L+ +E+ + Sbjct: 53 GGSAVLELEPPVLFAALERLAGGPARPGPMT---RLTRLEEASLAYLVLAALMAFRTQGE 109 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 + P L ++ + + + + +++ + L++P L T Sbjct: 110 LQRWWGPRLAGM-TVNRMDALARLDGRKAHLGVELVLSVGQRTAGARLVLPAVVLESTCR 168 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 ++ S + ++ + ++ ++ TL +G V+ F Sbjct: 169 KLPVQRDSSRAP----------EILAASLGARCFLGCRQLLPSELETLAVGDVVVF---- 214 Query: 272 KTCAILSANGKEIYSCELGRVG 293 L+ G L G Sbjct: 215 -EGVRLT-GGAPRGPGRLVTRG 234 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V ++ + L ++ TL+ GQ++P +L + + EL + Sbjct: 276 PVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELVDIDGEIGA 335 Query: 299 RITDRIN 305 RI + Sbjct: 336 RILSLLP 342 >gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] Length = 95 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +D + T+KD + L G ++ + N + I + ++ + Sbjct: 9 DLLVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRIIGTGDIIVI 68 Query: 293 GKNYTIRITDRINFD 307 + +R+ D ++ D Sbjct: 69 DEKLAVRVQDAMDSD 83 >gi|89068715|ref|ZP_01156101.1| Flagellar motor switch protein FliN [Oceanicola granulosus HTCC2516] gi|89045678|gb|EAR51740.1| Flagellar motor switch protein FliN [Oceanicola granulosus HTCC2516] Length = 132 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 12/107 (11%), Positives = 38/107 (35%), Gaps = 4/107 (3%) Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 ++P+ + + + + N + + ++ + + + ++ L Sbjct: 23 LLPELEAPEEQTVLENMVGEQVNGDGGRS---IEAMLNVGLEVNIVLGRSRMPISQLLKL 79 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY-TIRITDRIN 305 G +I R + + + + +L RVG N + +T+ + Sbjct: 80 SRGSIIELDKRIGEPVDMIVSDRLVARGDLVRVGDNRVGVTLTEIVK 126 >gi|323143898|ref|ZP_08078560.1| putative type III secretion apparatus protein, YscQ/HrcQ family [Succinatimonas hippei YIT 12066] gi|322416325|gb|EFY06997.1| putative type III secretion apparatus protein, YscQ/HrcQ family [Succinatimonas hippei YIT 12066] Length = 315 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 1/92 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + S Q + + + I+ + K L + L G V+ + Sbjct: 225 LLSSLQKTDSGDDMADSEELTT-IEDVELTINFSLESIKLPLSSIKELTEGSVLDLNNSA 283 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + GK I + VG ++IT Sbjct: 284 LENIAVKLEGKTIGYGRIIEVGGKNALQITRI 315 >gi|226326426|ref|ZP_03801944.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198] gi|225205209|gb|EEG87563.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198] Length = 313 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K ++ + L G I I+ NG + S EL ++ Sbjct: 238 QSINSIPVTVSFLLASKTLLIEQIEALAPGDKIELPENAYQHIIIKVNGISVASGELVKI 297 Query: 293 GKNYTIRITDRINFDQ 308 G N+ + I + + Sbjct: 298 GDNFAVEIQRSFSAQE 313 >gi|331005464|ref|ZP_08328843.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989] gi|330420740|gb|EGG95027.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989] Length = 255 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 16/185 (8%) Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ + T KL R + + L + ++ + ++SN Sbjct: 86 SKIAPKIEPTYNSKLFNRLVEECLKSLQ-----VNLINDFFDENNTSKNPQNLEKQVSNL 140 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 + T+ N L I + L S + + + Sbjct: 141 TIVTLKNN--------EISLKIFFSSFL--IDHIASEYIQKNKAKKGNLYSIKNSLANEK 190 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTI 298 ++ T+ +++++K G VI + +G++++ LG N+ I Sbjct: 191 ISFSVEYGNASLTVDEIMSIKTGDVIRLTKKIGDSVSAHNLSGEKLFDGSLGVNDNNFAI 250 Query: 299 RITDR 303 ++T + Sbjct: 251 KVTGK 255 >gi|307946346|ref|ZP_07661681.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4] gi|307770010|gb|EFO29236.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4] Length = 88 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 30/79 (37%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V+I + + + ++ + G VI E + AN + + ++ Sbjct: 1 MTTLDDIFVDISVVLGKSEMPIHQLLRMGRGAVIDLDVSEDDDVEIYANKTLVATGQVVL 60 Query: 292 VGKNYTIRITDRINFDQKS 310 +G+ I +T+ + + Sbjct: 61 LGERIGISVTEVLRRGPEI 79 >gi|190890354|ref|YP_001976896.1| flagellar motor switch protein [Rhizobium etli CIAT 652] gi|190695633|gb|ACE89718.1| flagellar motor switch protein [Rhizobium etli CIAT 652] Length = 195 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + + ++ L G I + + NG+ I E+ + Sbjct: 116 ELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175 Query: 293 GK---NYTIRITDRINFDQ 308 + +++ + ++ + Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194 >gi|315126004|ref|YP_004068007.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913] gi|315014518|gb|ADT67856.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913] Length = 110 Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + + + + TL ++ K G V+ + NG E+ V Sbjct: 37 QDVPLLVTLEVASTEITLGELSQAKEGDVLKLDKVAGEALDVKVNGVFFAKAEVVMVEGQ 96 Query: 296 YTIR 299 Y ++ Sbjct: 97 YGLK 100 >gi|83944188|ref|ZP_00956644.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp. EE-36] gi|83845055|gb|EAP82936.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp. EE-36] Length = 114 Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + +++ + + + +++ L G VI R + N + + +L RV Sbjct: 35 DAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLVRV 94 Query: 293 -GKNYTIRITDRINFDQKSLKNF 314 G + + + + + + + + Sbjct: 95 QGDSLGVALREIV---KDFVSDI 114 >gi|254418697|ref|ZP_05032421.1| Surface presentation of antigens protein, putative [Brevundimonas sp. BAL3] gi|196184874|gb|EDX79850.1| Surface presentation of antigens protein, putative [Brevundimonas sp. BAL3] Length = 83 Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++V I + + ++ + G VIP E + AN + E+ Sbjct: 1 MSQINAVDVEISVVLGRMVLPMSQLLRMGRGAVIPLDASEGDEVWILANNHPVARGEIEI 60 Query: 292 VGKNYTIRITD 302 I +T Sbjct: 61 RDDRIAITVTR 71 >gi|218508216|ref|ZP_03506094.1| flagellar motor switch protein [Rhizobium etli Brasil 5] Length = 195 Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + + ++ L G I + + NG+ I E+ + Sbjct: 116 ELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175 Query: 293 GK---NYTIRITDRINFDQ 308 + +++ + ++ + Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194 >gi|54124953|gb|AAV30221.1| AscQ [Aeromonas hydrophila] Length = 308 Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 60/239 (25%), Gaps = 21/239 (8%) Query: 88 LSSWSSNFFIGCSNNLVITLLENL---LGAS--HETIPQLYNRSLSTVEKKLAKRTIAQI 142 + +L + L+E L LG + +L + Sbjct: 72 APDLQQAALLSLPESLRLALIERLGQPLGGLTCSALAAHAIGEETAEPALQLLLKREGAT 131 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN-MTIENV-------- 193 A+ P + + + V ++ + +V Sbjct: 132 LALWLAEPGPLLGKLPPRPIQQRLPLPLALSLQWGAMRVAIADLETLACGDVLLPPPSPL 191 Query: 194 -ASSFVLII---PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 ++ + P + + + L + L V + + + Sbjct: 192 LGQQLLVCVEGRPFAYCQPHPQHLELTAMHNAAPDDALDPS---QLEGLPVQVTFEVGRQ 248 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + TL+ G +I + +NG + + L + +R+ + Q Sbjct: 249 TLDWHTLTTLQPGSLIDLGAPIDGEVRIISNGHLLGNGRLVEIQGRLGVRVESLKSESQ 307 >gi|296447444|ref|ZP_06889369.1| flagellar motor switch protein FliN [Methylosinus trichosporium OB3b] gi|296255064|gb|EFH02166.1| flagellar motor switch protein FliN [Methylosinus trichosporium OB3b] Length = 123 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 5/102 (4%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 L+S+ D ++ V + + + +++ L G ++P Sbjct: 17 PRIDAGLASEEPRAGMDVDSRKL--ESILRIPVVMQVIVGSVTMPVSNLMKLGRGAIVPL 74 Query: 268 LHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDRINF 306 + + NG+ I E+ V + + +T+ I Sbjct: 75 DQKIGEPVDVVVNGRLIARGEVVVVEDDNTRFGVSLTEIIEP 116 >gi|325107429|ref|YP_004268497.1| surface presentation of antigens (SPOA) protein [Planctomyces brasiliensis DSM 5305] gi|324967697|gb|ADY58475.1| surface presentation of antigens (SPOA) protein [Planctomyces brasiliensis DSM 5305] Length = 295 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 AR+ LNV + R+ K L ++ L G ++ F L N + E + Sbjct: 211 ARRLMNLNVKVSVRLAEMKIELSTLINLCPGTLLVFPKSCDDLLDLYVNNRLYAQGEAVK 270 Query: 292 VGKNYTIRITDR 303 +G+ + +++ + Sbjct: 271 IGEKFGLKVNEI 282 >gi|153949575|ref|YP_001399620.1| lateral flagellar export/assembly protein [Yersinia pseudotuberculosis IP 31758] gi|152961070|gb|ABS48531.1| lateral flagellar export/assembly protein [Yersinia pseudotuberculosis IP 31758] Length = 292 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 67/207 (32%), Gaps = 17/207 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR--SLSTVEKKLAKRTIAQISAVLNQCI 150 N L++ +L + G S E + L+ E++L + +I+ + Sbjct: 85 GNIAFDIDRLLLLNILNDYYGLSQEKKTTTTEKLSPLTKTEERLKNKLGLEITDLF---- 140 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + + I + I+ + + + F + I + + Sbjct: 141 -----LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYHKSG-FSIFIDAPHIDRFI 192 Query: 211 LISLSSQNKSENQSEDLI-DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + KS ++ L +L V + ++++ TL +++ LK G +I Sbjct: 193 NTIKTKSEKSVEKNVSLSEKQLEHLVKKLPVTLTSQLSNINLTLAELMALKEGDIISASL 252 Query: 270 REKTCAILSANGKEIYSCELGRVGKNY 296 E + + ++S + Sbjct: 253 PEYFP--VFIGKEALFSAAITENRGKL 277 >gi|83955111|ref|ZP_00963767.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1] gi|83840440|gb|EAP79613.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1] Length = 114 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 32/83 (38%), Gaps = 4/83 (4%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + +++ + + + +++ L G VI R + N + + +L RV Sbjct: 35 DAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLVRV 94 Query: 293 -GKNYTIRITDRINFDQKSLKNF 314 G + + + + + + + Sbjct: 95 QGDSLGVALREIV---KDFVSEI 114 >gi|153011535|ref|YP_001372749.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC 49188] gi|151563423|gb|ABS16920.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC 49188] Length = 115 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++ + + +++ L G VI + + NG+ I E+ + Sbjct: 39 ELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I Sbjct: 99 EDDSSRFGVSLTEIIGK 115 >gi|10955563|ref|NP_052404.1| type III secretion system protein [Yersinia enterocolitica] gi|28373030|ref|NP_783678.1| type III secretion system protein [Yersinia enterocolitica] gi|32470291|ref|NP_863526.1| type III secretion system protein [Yersinia enterocolitica] gi|122815815|ref|YP_001004081.1| type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163585|ref|YP_004424927.1| type III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|14579349|gb|AAK69226.1|AF336309_21 YscQ [Yersinia enterocolitica] gi|4324350|gb|AAD16827.1| YscQ [Yersinia enterocolitica W22703] gi|23630602|gb|AAN37558.1| YscQ [Yersinia enterocolitica] gi|121663689|emb|CAL10051.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923234|emb|CBW54700.1| YscQ, T3SS component [Yersinia enterocolitica (type O:8)] gi|325667815|gb|ADZ44458.1| type III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 307 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 1/87 (1%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S E P QL V + + + + +L+ G +I Sbjct: 215 FIGMSHESDELNPKPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302 L ANG+ + L + +RI Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300 >gi|260466629|ref|ZP_05812817.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum WSM2075] gi|259029635|gb|EEW30923.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum WSM2075] Length = 128 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 39/108 (36%), Gaps = 3/108 (2%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + + + + + + + V++ + + + D++ L+ G Sbjct: 19 RAIEELRGVLHEEEQRPDAAFRAAAGANSSVIMNIPVDVQIILGSTEMAVSDLMALQKGS 78 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVG---KNYTIRITDRINFDQ 308 + R + NG++I E+ + + IR+T+ I + Sbjct: 79 TVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEIIAGTK 126 >gi|168699680|ref|ZP_02731957.1| hypothetical protein GobsU_09164 [Gemmata obscuriglobus UQM 2246] Length = 117 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + I R+ + +++TL G V+ L+ G E+ V Sbjct: 37 ESLRDVPITITARLGRAVLPIGEILTLGPGSVVELEEVISAPVELTVRGVPFAVGEVVVV 96 Query: 293 GKNYTIRITDRINF 306 G+++ +RI + + Sbjct: 97 GEHFAVRIKNLLPP 110 >gi|294496838|ref|YP_003560535.1| type III secretion protein [Yersinia pestis Z176003] gi|262364006|gb|ACY64343.1| type III secretion protein [Yersinia pestis D182038] gi|294352426|gb|ADE66483.1| type III secretion protein [Yersinia pestis Z176003] Length = 305 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 1/87 (1%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S E +P QL V + + + + +L+ G +I Sbjct: 213 FIGMSHESDELNPEPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 271 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302 L ANG+ + L + +RI Sbjct: 272 RLLANGRLLGHGRLVEIQGRLGVRIER 298 >gi|16082731|ref|NP_395177.1| type III secretion system protein [Yersinia pestis CO92] gi|31795278|ref|NP_857739.1| type III secretion system protein [Yersinia pestis KIM] gi|31795480|ref|NP_857934.1| type III secretion system protein [Yersinia pestis KIM] gi|45478541|ref|NP_995368.1| type III secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|51593912|ref|YP_068479.1| type III secretion system protein [Yersinia pseudotuberculosis IP 32953] gi|108793661|ref|YP_636811.1| type III secretion system protein [Yersinia pestis Antiqua] gi|145597139|ref|YP_001154603.1| type III secretion system protein [Yersinia pestis Pestoides F] gi|149192696|ref|YP_001293928.1| type III secretion system protein [Yersinia pestis CA88-4125] gi|162417770|ref|YP_001604475.1| type III secretion system protein [Yersinia pestis Angola] gi|165927755|ref|ZP_02223587.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. F1991016] gi|165940056|ref|ZP_02228590.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. IP275] gi|166011716|ref|ZP_02232614.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. E1979001] gi|166214457|ref|ZP_02240492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. B42003004] gi|167401907|ref|ZP_02307393.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422402|ref|ZP_02314155.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422438|ref|ZP_02314191.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422900|ref|ZP_02314653.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426869|ref|ZP_02318622.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897577|ref|YP_001874688.1| type III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229896859|ref|ZP_04512019.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|229900214|ref|ZP_04515350.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|270491107|ref|ZP_06208179.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis KIM D27] gi|322836569|ref|YP_004210065.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9] gi|1176912|sp|P42713|YSCQ_YERPE RecName: Full=Yop proteins translocation protein Q gi|55977795|sp|P40296|YSCQ_YERPS RecName: Full=Yop proteins translocation protein Q gi|2465658|gb|AAB72200.1| YscQ [Yersinia pestis] gi|2996238|gb|AAC62561.1| Yop proteins translocation protein Q [Yersinia pestis KIM 10] gi|3822068|gb|AAC69788.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832463|emb|CAB54920.1| putative type III secretion protein [Yersinia pestis CO92] gi|45357163|gb|AAS58559.1| putative type III secretion protein YscQ [Yersinia pestis biovar Microtus str. 91001] gi|51591609|emb|CAF25413.1| yscQ; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|108782208|gb|ABG16263.1| type III secretion protein [Yersinia pestis Antiqua] gi|145212907|gb|ABP42313.1| type III secretion protein [Yersinia pestis Pestoides F] gi|148872354|gb|ABR14844.1| putative type III secretion protein [Yersinia pestis CA88-4125] gi|162354790|gb|ABX88737.1| type III secretion apparatus protein YscQ [Yersinia pestis Angola] gi|165911966|gb|EDR30609.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. IP275] gi|165920191|gb|EDR37492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. F1991016] gi|165989323|gb|EDR41624.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. E1979001] gi|166204350|gb|EDR48830.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. B42003004] gi|166958190|gb|EDR55211.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958639|gb|EDR55660.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958675|gb|EDR55696.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048635|gb|EDR60043.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054168|gb|EDR63995.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700603|gb|ACC91231.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia pseudotuberculosis PB1/+] gi|229686734|gb|EEO78814.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700130|gb|EEO88169.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|262363849|gb|ACY60569.1| type III secretion protein [Yersinia pestis D106004] gi|270334850|gb|EFA45629.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis KIM D27] gi|317374481|gb|ADV16656.1| type III secretion inner membrane protein [Yersinia pestis] gi|321161343|gb|ADW67049.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9] Length = 307 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 1/87 (1%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S E +P QL V + + + + +L+ G +I Sbjct: 215 FIGMSHESDELNPEPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302 L ANG+ + L + +RI Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300 >gi|318608198|emb|CBY78172.1| type III secretion inner membrane protein (YscQ,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] Length = 307 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 1/87 (1%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S E P QL V + + + + +L+ G +I Sbjct: 215 FIGMSHESDELNPKPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302 L ANG+ + L + +RI Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300 >gi|116250473|ref|YP_766311.1| flagellar motor switch protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255121|emb|CAK06195.1| putative flagellar motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 195 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + + ++ L G I + + NG+ I E+ + Sbjct: 116 DLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175 Query: 293 GK---NYTIRITDRINFDQ 308 + +++ + ++ + Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194 >gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae] Length = 325 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 1/91 (1%) Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 ++ + I + + L+ + L G +I + AN Sbjct: 214 SETDNLANQSL-TNLEEIQIPIRFEVGRQYIELQALTHLSEGSLIDLAVPVNGDVRIIAN 272 Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + + + +L + I++ + + L Sbjct: 273 QQPLGTGQLVEIQGRLGIKVVELFAKKTEPL 303 >gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] Length = 83 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++V I + ++ ++ + G VIP EK + AN + E+ Sbjct: 1 MSQIEAVDVEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGEIEI 60 Query: 292 VGKNYTIRITD 302 I +T Sbjct: 61 RDDRIAITVTR 71 >gi|475122|gb|AAA27677.1| yscQ [Yersinia pseudotuberculosis] Length = 307 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 1/87 (1%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S E +P QL V + + + + +L+ G +I Sbjct: 215 FIGMSHESDELNPEPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302 L ANG+ + L + +RI Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300 >gi|83594500|ref|YP_428252.1| surface presentation of antigens (SPOA) protein [Rhodospirillum rubrum ATCC 11170] gi|83577414|gb|ABC23965.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum rubrum ATCC 11170] Length = 93 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 2/86 (2%) Query: 223 QSEDLIDPFARK-TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 E +++ Y + V I + + ++ L G V+ + + AN Sbjct: 2 ADEQDSKRISKQAVYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYAND 61 Query: 282 KEIYSCEL-GRVGKNYTIRITDRINF 306 + E+ G + +T+ + Sbjct: 62 ILVARGEVIITDGDKIGVTLTELVRS 87 >gi|170022957|ref|YP_001719462.1| flagellar motor switch protein [Yersinia pseudotuberculosis YPIII] gi|169749491|gb|ACA67009.1| flagellar motor switch protein [Yersinia pseudotuberculosis YPIII] Length = 299 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143 N L++ +L + G S E + L+ E++L + +I+ Sbjct: 85 GNIAFDIDRLLLLNILNDYYGLSQEKYGLSPEKKTTTTGKLSPLTKTEERLKNKLGLEIT 144 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + + + I + I+ + N + F + I Sbjct: 145 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 192 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + + + K+ ++ L + +L V + ++++ TL +++ LK G Sbjct: 193 PHIDRLIDTIKTKSEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAELMALKEG 252 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +I E + + ++S + Sbjct: 253 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 284 >gi|209547919|ref|YP_002279836.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533675|gb|ACI53610.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 195 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + + ++ L G I + + NG+ I E+ + Sbjct: 116 ELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175 Query: 293 GK---NYTIRITDRINFDQ 308 + +++ + ++ + Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194 >gi|163800130|ref|ZP_02194031.1| putative flagellar motor switch protein [Vibrio sp. AND4] gi|159175573|gb|EDP60367.1| putative flagellar motor switch protein [Vibrio sp. AND4] Length = 272 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 85/295 (28%), Gaps = 53/295 (17%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMD--------LDVDISYTSCQSGKFSHIIHSFK 78 D + + K + +K + + + ++ + + +FS Sbjct: 16 DAELLGKPIHIIREKLEKLISESCSSLTNELQNWLNTSKIEADLFAVELHRFS------- 68 Query: 79 ENFVFSQASLSSWS----SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + + S++ +I + L + + + SL+ + +L Sbjct: 69 -PTLLVKDQTSAYQHQDGGMVYIHTDTQALTKLADRFY----SAANERVSTSLTASDLRL 123 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 +R I+ Q+ + +++ E + Sbjct: 124 QERISRIITN-----WLAPQDMW------------QTCEYEAPRGIGLHTEISIAFEGLQ 166 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 S L + + + + +L PF R V ++ ++ K L Sbjct: 167 GSIHLKLDSTMIQTLIEQL------ALHNETNLYQPFCRSLESTPVRLNVVLSKKTMALS 220 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 DVV L+ ++P +S + ++S + + N D++ Sbjct: 221 DVVELQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IFNPDKE 269 >gi|118591116|ref|ZP_01548515.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614] gi|118436192|gb|EAV42834.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614] Length = 88 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 29/75 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ V+I + + + ++ + G VI E + AN + ++ +G+ Sbjct: 5 DEIKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGER 64 Query: 296 YTIRITDRINFDQKS 310 I IT+ + Sbjct: 65 IGISITEVLMRPPDI 79 >gi|207109202|ref|ZP_03243364.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_CA4C1] Length = 78 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + L ++ + G VI NG+ I E+ +N IR Sbjct: 1 MFFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIR 60 Query: 300 ITDRINFD 307 + + ++ + Sbjct: 61 LNEILDSN 68 >gi|157147123|ref|YP_001454442.1| hypothetical protein CKO_02900 [Citrobacter koseri ATCC BAA-895] gi|157084328|gb|ABV14006.1| hypothetical protein CKO_02900 [Citrobacter koseri ATCC BAA-895] Length = 294 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 64/211 (30%), Gaps = 23/211 (10%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL--STVEKKLAKRTIAQISAVL--NQ 148 N L++ +L + G S ++ + SL + E++L + +++ ++ + Sbjct: 85 GNVAFVIDRILLLNILHDYYGLSKDSSHVAPDESLRVTKTEERLRSKLGQELTQLVICKE 144 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + + + + + I + SF +++ + + Sbjct: 145 TFGENLDIKVDYS-------------TVISHWSWCITFTLE-GYDHGSFTILLDHHHVDQ 190 Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 I S + R L + + R+ T+ + +K G +I Sbjct: 191 MLAILRSPDAADSRAVKSVPLNPAQIERLFDSLPLKLSGRLASLNLTVAQISDIKPGDII 250 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNY 296 P + ++I+ + Sbjct: 251 PIA--INEPLPVFIGKEQIFEAAIVEDRSKL 279 >gi|13472566|ref|NP_104133.1| flagellar motor switch protein FliN [Mesorhizobium loti MAFF303099] gi|14023312|dbj|BAB49919.1| flagellar motor switch protein; FliN [Mesorhizobium loti MAFF303099] Length = 128 Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 39/108 (36%), Gaps = 3/108 (2%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + + + + + + + V++ + + + D++ L+ G Sbjct: 19 RAIEELRGVLHEEEQRPDAAFRAAAGANSNVIMNIPVDVQIILGSTEMAVADLMALQKGS 78 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVG---KNYTIRITDRINFDQ 308 + R + NG++I E+ + + IR+T+ I + Sbjct: 79 TVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEIIAGTK 126 >gi|188583911|ref|YP_001927356.1| surface presentation of antigens (SPOA) protein [Methylobacterium populi BJ001] gi|179347409|gb|ACB82821.1| surface presentation of antigens (SPOA) protein [Methylobacterium populi BJ001] Length = 101 Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +L V++ + L ++ + G VI E + AN I ++ G Sbjct: 4 LDELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGN 63 Query: 295 NYTIRITDRINFDQ 308 ++ +T+ I + Sbjct: 64 RISVEVTELIRKAE 77 >gi|241203097|ref|YP_002974193.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856987|gb|ACS54654.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 194 Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + + ++ L G I + + NG+ I E+ + Sbjct: 115 DLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 174 Query: 293 GK---NYTIRITDRINFDQ 308 + +++ + ++ + Sbjct: 175 DNDDTRFGVKLIEVLSTKK 193 >gi|114706763|ref|ZP_01439663.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Fulvimarina pelagi HTCC2506] gi|114537711|gb|EAU40835.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Fulvimarina pelagi HTCC2506] Length = 131 Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 8/74 (10%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++V + + + ++ +++ L G ++ + + NG+ I E+ + Sbjct: 43 DLVLDVSVTMQVVLGSARMSVSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIVVL 102 Query: 293 ---GKNYTIRITDR 303 + + + +T+ Sbjct: 103 DQDDQQFGVTLTEV 116 >gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2] gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2] Length = 80 Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 25/75 (33%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++V++ + + + V+ L G +I E+ + AN + S + Sbjct: 4 IDNVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVVNRN 63 Query: 295 NYTIRITDRINFDQK 309 + + + Sbjct: 64 RIAVEVKRMLPKTAD 78 >gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum CMR15] Length = 132 Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 30/68 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + T+ +++ K QV+ + L GK + +L V + Sbjct: 58 LHRVKAQLTVCVGTATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDE 117 Query: 295 NYTIRITD 302 ++ +RIT+ Sbjct: 118 HFGVRITE 125 >gi|288550130|ref|ZP_05969371.2| flagellar motor switch protein [Enterobacter cancerogenus ATCC 35316] gi|288316311|gb|EFC55249.1| flagellar motor switch protein [Enterobacter cancerogenus ATCC 35316] Length = 293 Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 32/264 (12%), Positives = 80/264 (30%), Gaps = 33/264 (12%) Query: 39 GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98 ++ L F +K+ ++V + QS F+ I +N + Sbjct: 42 FDIFDARLSIYFLKKLRVNV-----ALQSMTFA--IDQTYKNTQLFSTPF----GSMAFS 90 Query: 99 CSNNLVITLLENLLGASHETIPQLYN--RSLSTVEKKLAKRTIAQISAVL--NQCISTTQ 154 L++ +L + G E+ + + + ++ E +L + ++ +L + Sbjct: 91 IERTLLLQILHDYYGLGKESRNKSLDVHQPVTKTEDRLKNKIGLDLTRLLIDKETFGQDV 150 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214 E + + N++ + + SF L+ + Sbjct: 151 EIKSD-------------NTTVINQWSWCVTFTLE-GYEQGSFTLLFDNAHVDHLLAKLR 196 Query: 215 SSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 S + R Y L + + + T+ + +K G +IP E Sbjct: 197 SPDADQATSRQAPPTPTQIERIFYGLPLKLHGHVTSLNLTVAQLARIKPGDIIPVNINEN 256 Query: 273 TCAILSANGKEIYSCELGRVGKNY 296 + ++I+ ++ Sbjct: 257 IP--VYIGKEQIFDAKIAEDRGKL 278 >gi|167568051|ref|ZP_02360967.1| translocation protein in type III secretion [Burkholderia oklahomensis EO147] Length = 349 Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + ++ L + +L+ G V+ + L GK L VG Sbjct: 280 DAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQPDGLVTLQVAGKPFARGTLLDVGGRL 339 Query: 297 TIRITDRIN 305 +RI + Sbjct: 340 AVRIEHLLP 348 >gi|149191149|ref|ZP_01869407.1| flagellar basal-body rod protein B [Vibrio shilonii AK1] gi|148834987|gb|EDL51966.1| flagellar basal-body rod protein B [Vibrio shilonii AK1] Length = 255 Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 69/233 (29%), Gaps = 25/233 (10%) Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 FS H +N + + ++ + + F LL L + + + RS S Sbjct: 47 SFSEA-HKPPKNSIKTVLNIEDF-GHVFFFIEPQAADILLYKHL--NTPSPTRKSKRSSS 102 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 ++ L I+ + + D+ ++ TTI + Sbjct: 103 DTTLTQTHL---RLFQKLTMAITNILTADASHYAVEHTDH-------QPSDIGTTITFS- 151 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + ++ + K + S++ + V + + Sbjct: 152 -FDEQQIDITFMLDDRYVKKLRDVMESNETFD-------REEILNNLRYQPVELGCVMLH 203 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + TL ++ L+ G +P + + NG + +L + + I Sbjct: 204 GQCTLHELSKLQPGDFMPMTLCKN--LTVKVNGHPTFFGKLQSINSELGVEID 254 >gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814] gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica ATCC 49814] Length = 80 Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + K ++ ++ + G VIP E + AN I EL G+ Sbjct: 1 MDAVEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVIDGE 60 Query: 295 NYTIRITDRINFDQ 308 ++ +T + Sbjct: 61 RVSVSVTGAAQVED 74 >gi|239834453|ref|ZP_04682781.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG 3301] gi|239822516|gb|EEQ94085.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG 3301] Length = 115 Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++ + + +++ L G VI + + NG+ I E+ + Sbjct: 39 ELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I Sbjct: 99 EDDSSRFGVSLTEIIGK 115 >gi|163853607|ref|YP_001641650.1| surface presentation of antigens (SPOA) protein [Methylobacterium extorquens PA1] gi|218532467|ref|YP_002423283.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|240141029|ref|YP_002965509.1| putative flagellar motor switch protein FliN [Methylobacterium extorquens AM1] gi|254563543|ref|YP_003070638.1| flagellar motor switch protein FliN [Methylobacterium extorquens DM4] gi|163665212|gb|ABY32579.1| surface presentation of antigens (SPOA) protein [Methylobacterium extorquens PA1] gi|218524770|gb|ACK85355.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|240011006|gb|ACS42232.1| putative flagellar motor switch protein FliN [Methylobacterium extorquens AM1] gi|254270821|emb|CAX26826.1| putative flagellar motor switch protein FliN [Methylobacterium extorquens DM4] Length = 101 Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +L V++ + L ++ + G VI E + AN I ++ G Sbjct: 4 LDELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGN 63 Query: 295 NYTIRITDRINFDQ 308 ++ +T+ I + Sbjct: 64 RISVEVTELIRKAE 77 >gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp. SB155-2] gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp. SB155-2] Length = 83 Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + R+ K + ++++LK G VI + + N K++ E+ + Sbjct: 14 LEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIVVIND 73 Query: 295 NYTIRITD 302 Y +RI D Sbjct: 74 KYGVRIVD 81 >gi|167572946|ref|ZP_02365820.1| translocation protein in type III secretion [Burkholderia oklahomensis C6786] Length = 361 Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + ++ L + +L+ G V+ + L GK L VG Sbjct: 292 DAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQPDGFVTLQVAGKPFARGTLLDVGGRL 351 Query: 297 TIRITDRIN 305 +RI + Sbjct: 352 AVRIEHLLP 360 >gi|313673294|ref|YP_004051405.1| surface presentation of antigens (spoa) protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940050|gb|ADR19242.1| surface presentation of antigens (SPOA) protein [Calditerrivibrio nitroreducens DSM 19672] Length = 94 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 31/76 (40%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + + + +++ + K T+ ++++ + G +I + N K + Sbjct: 3 KEYVIKHFSDVIMDVTVELGRKLCTIGELLSWEQGTIIKLNKTSGEVVDMLVNNKPLAIG 62 Query: 288 ELGRVGKNYTIRITDR 303 E+ + + + R++D Sbjct: 63 EIMVLDEKFAFRLSDI 78 >gi|254499104|ref|ZP_05111794.1| putative surface presentation of antigens (SPOA) protein [Legionella drancourtii LLAP12] gi|254351643|gb|EET10488.1| putative surface presentation of antigens (SPOA) protein [Legionella drancourtii LLAP12] Length = 101 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V RI T+ ++ LK GQ + + + N + I EL Sbjct: 31 VGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQKTHEPVEIVLNERVIARGELMSHED 90 Query: 295 NYTIRITDRIN 305 ++ ++IT+ + Sbjct: 91 HFAVQITEIYS 101 >gi|254470456|ref|ZP_05083860.1| putative surface presentation of antigens protein [Pseudovibrio sp. JE062] gi|211960767|gb|EEA95963.1| putative surface presentation of antigens protein [Pseudovibrio sp. JE062] Length = 88 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 29/79 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++V+I + + + ++ + G VI E + AN + ++ Sbjct: 1 MNRFDDISVDISVVLGKSEMPVHQLLRMGRGAVIELDTHEADDVTILANNTPVAEGQVTV 60 Query: 292 VGKNYTIRITDRINFDQKS 310 VG I IT + + Sbjct: 61 VGDKVGIVITKVLQRAVEM 79 >gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 351 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P T+ + ++N S ++ D +L + + ++ + TL + + Sbjct: 248 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 G ++P L NG+ I EL +G +R+ Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345 >gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5] gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5] Length = 80 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 25/72 (34%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++V++ + K + V+ L G +I E+ + AN + S + Sbjct: 4 LDNVSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVVNRN 63 Query: 295 NYTIRITDRINF 306 + + + Sbjct: 64 RIAVEVKRMLPK 75 >gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 351 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P T+ + ++N S ++ D +L + + ++ + TL + + Sbjct: 248 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 G ++P L NG+ I EL +G +R+ Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345 >gi|23009135|ref|ZP_00050297.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magnetotacticum MS-1] Length = 101 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +L V++ + L ++ + G VI E + AN I ++ G Sbjct: 4 LDELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGN 63 Query: 295 NYTIRITDRINFDQ 308 ++ +T+ I + Sbjct: 64 RISVEVTELIRKAE 77 >gi|218679322|ref|ZP_03527219.1| putative flagellar motor switch protein [Rhizobium etli CIAT 894] Length = 178 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + + ++ L G I + + NG+ I E+ + Sbjct: 99 ELIMDIPIDVQIMLGTNRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 158 Query: 293 GK---NYTIRITDRINFDQ 308 + +++ + ++ + Sbjct: 159 DNDDTRFGVKLIEVLSTKK 177 >gi|110632666|ref|YP_672874.1| flagellar motor switch protein FliN [Mesorhizobium sp. BNC1] gi|110283650|gb|ABG61709.1| flagellar motor switch protein FliN [Chelativorans sp. BNC1] Length = 121 Score = 58.9 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 TL K S+ ++ + D + V + + + T+ +++ L+ G Sbjct: 15 TLDKAIEEMRSALHEEAQPNMDAEK--TGFLVDIPVELQIVLGSAEMTVSELMALQRGST 72 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDR 303 + R + NG+ I E+ + + +R+T+ Sbjct: 73 VSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114 >gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] Length = 344 Score = 58.9 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P T+ + ++N S ++ D +L + + ++ + TL + + Sbjct: 241 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 299 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 G ++P L NG+ I EL +G +R+ Sbjct: 300 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 338 >gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040365|gb|ACT57161.1| putative flagellar motor switch protein [Candidatus Liberibacter asiaticus str. psy62] Length = 147 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V + + + ++V L G VI R ++ N ++I E+ + Sbjct: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 Query: 293 GK---NYTIRITDRINFD 307 + ++ +R+ + +N Sbjct: 130 EEDDTHFGVRVIEILNAQ 147 >gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 301 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P T+ + ++N S ++ D +L + + ++ + TL + + Sbjct: 198 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 256 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 G ++P L NG+ I EL +G +R+ Sbjct: 257 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 295 >gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 301 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P T+ + ++N S ++ D +L + + ++ + TL + + Sbjct: 198 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 256 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 G ++P L NG+ I EL +G +R+ Sbjct: 257 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 295 >gi|39545586|gb|AAR27893.1| AscQ [Aeromonas hydrophila] Length = 307 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 30/237 (12%) Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE------KKLAKRTIAQ 141 +L + L+E L + + L +L+ + + + + + Sbjct: 72 APDLQQAALFSLPESLQLALIERL----GQPLGNLSCSALAPIATNEAAGQPALQLLLKR 127 Query: 142 ISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMN-MTIENV---- 193 A L ++ P + + + V + ++ +V Sbjct: 128 EGATLAFWLAEPGPLFGKLPTRPSQQRLTLPLTLSLQWGAMRVAISELETLSYGDVLLPL 187 Query: 194 -----ASSFVLII---PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 +L + P L + + A + L + + Sbjct: 188 PHPLLGQQLLLCVEGRPFAYCLPHQQHLELTAMHNAADDNLD----ATQLDNLPIQVTFE 243 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + + TL+ G +I + +NG ++ S L + +R+ Sbjct: 244 VGRQTLDWHSLTTLQPGSLIDLGTPIDGEVRIISNGHQLGSGRLVEIQGRLGVRVES 300 >gi|150395475|ref|YP_001325942.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419] gi|150026990|gb|ABR59107.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419] Length = 215 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 8/74 (10%), Positives = 26/74 (35%), Gaps = 3/74 (4%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++I + + + ++ L G I + + NG+ I E+ + Sbjct: 137 DLIMDIPIDIQIVLGTSRMQVSSLMNLTEGATIALDRKIGEPVEIMVNGRVIGRGEITVL 196 Query: 293 GK---NYTIRITDR 303 + +++ + Sbjct: 197 EGDVTRFGVKLLEI 210 >gi|148558477|ref|YP_001257190.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC 25840] gi|148369762|gb|ABQ62634.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC 25840] Length = 115 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++ + + ++ L G VI + + NG+ I E+ + Sbjct: 39 DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I Sbjct: 99 EDDSSRFGVSLTEIIGK 115 >gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] Length = 351 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P T + ++N S ++ D +L + + ++ + TL + + Sbjct: 248 PLRTFSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 G ++P L NG+ I EL +G +R+ Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345 >gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 351 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P T + ++N S ++ D +L + + ++ + TL + + Sbjct: 248 PLRTFSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 G ++P L NG+ I EL +G +R+ Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345 >gi|189022343|ref|YP_001932084.1| Flagellar motor switch FliN protein [Brucella abortus S19] gi|225628599|ref|ZP_03786633.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo] gi|237816638|ref|ZP_04595630.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A] gi|254691435|ref|ZP_05154689.1| Flagellar motor switch FliN protein [Brucella abortus bv. 6 str. 870] gi|254695266|ref|ZP_05157094.1| Flagellar motor switch FliN protein [Brucella abortus bv. 3 str. Tulya] gi|254698365|ref|ZP_05160193.1| Flagellar motor switch FliN protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699434|ref|ZP_05161262.1| Flagellar motor switch FliN protein [Brucella suis bv. 5 str. 513] gi|254706319|ref|ZP_05168147.1| Flagellar motor switch FliN protein [Brucella pinnipedialis M163/99/10] gi|254711389|ref|ZP_05173200.1| Flagellar motor switch FliN protein [Brucella pinnipedialis B2/94] gi|254711988|ref|ZP_05173799.1| Flagellar motor switch FliN protein [Brucella ceti M644/93/1] gi|254715058|ref|ZP_05176869.1| Flagellar motor switch FliN protein [Brucella ceti M13/05/1] gi|254720634|ref|ZP_05182445.1| Flagellar motor switch FliN protein [Brucella sp. 83/13] gi|256029981|ref|ZP_05443595.1| Flagellar motor switch FliN protein [Brucella pinnipedialis M292/94/1] gi|256043046|ref|ZP_05445991.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 1 str. Rev.1] gi|256111968|ref|ZP_05452919.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 3 str. Ether] gi|256256621|ref|ZP_05462157.1| Flagellar motor switch FliN protein [Brucella abortus bv. 9 str. C68] gi|256262890|ref|ZP_05465422.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str. 63/9] gi|260544316|ref|ZP_05820137.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038] gi|260564278|ref|ZP_05834763.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str. 16M] gi|260568541|ref|ZP_05839010.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40] gi|260757054|ref|ZP_05869402.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str. 870] gi|260759575|ref|ZP_05871923.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str. 292] gi|260762819|ref|ZP_05875151.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str. 86/8/59] gi|260882864|ref|ZP_05894478.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str. C68] gi|261215631|ref|ZP_05929912.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str. Tulya] gi|261216765|ref|ZP_05931046.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1] gi|261313766|ref|ZP_05952963.1| flagellar motor switch protein FliN [Brucella pinnipedialis M163/99/10] gi|261318995|ref|ZP_05958192.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94] gi|261319632|ref|ZP_05958829.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1] gi|261749885|ref|ZP_05993594.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513] gi|265985678|ref|ZP_06098413.1| flagellar motor switch protein FliN [Brucella sp. 83/13] gi|265987002|ref|ZP_06099559.1| flagellar motor switch protein FliN [Brucella pinnipedialis M292/94/1] gi|265989484|ref|ZP_06102041.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str. Rev.1] gi|265993417|ref|ZP_06105974.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str. Ether] gi|294853147|ref|ZP_06793819.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL 07-0026] gi|297249978|ref|ZP_06933679.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5 str. B3196] gi|306837358|ref|ZP_07470237.1| flagellar motor switch protein FliN [Brucella sp. NF 2653] gi|306841072|ref|ZP_07473795.1| flagellar motor switch protein FliN [Brucella sp. BO2] gi|306846303|ref|ZP_07478864.1| flagellar motor switch protein FliN [Brucella sp. BO1] gi|189020917|gb|ACD73638.1| Flagellar motor switch FliN protein [Brucella abortus S19] gi|225616445|gb|EEH13493.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo] gi|237787451|gb|EEP61667.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A] gi|260097587|gb|EEW81461.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038] gi|260151921|gb|EEW87014.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str. 16M] gi|260155206|gb|EEW90287.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40] gi|260669893|gb|EEX56833.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str. 292] gi|260673240|gb|EEX60061.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str. 86/8/59] gi|260677162|gb|EEX63983.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str. 870] gi|260872392|gb|EEX79461.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str. C68] gi|260917238|gb|EEX84099.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str. Tulya] gi|260921854|gb|EEX88422.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1] gi|261292322|gb|EEX95818.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1] gi|261298218|gb|EEY01715.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94] gi|261302792|gb|EEY06289.1| flagellar motor switch protein FliN [Brucella pinnipedialis M163/99/10] gi|261739638|gb|EEY27564.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513] gi|262764287|gb|EEZ10319.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str. Ether] gi|263000153|gb|EEZ12843.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str. Rev.1] gi|263092727|gb|EEZ16936.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str. 63/9] gi|264659199|gb|EEZ29460.1| flagellar motor switch protein FliN [Brucella pinnipedialis M292/94/1] gi|264664270|gb|EEZ34531.1| flagellar motor switch protein FliN [Brucella sp. 83/13] gi|294818802|gb|EFG35802.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL 07-0026] gi|297173847|gb|EFH33211.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5 str. B3196] gi|306273298|gb|EFM55167.1| flagellar motor switch protein FliN [Brucella sp. BO1] gi|306288910|gb|EFM60213.1| flagellar motor switch protein FliN [Brucella sp. BO2] gi|306407550|gb|EFM63750.1| flagellar motor switch protein FliN [Brucella sp. NF 2653] gi|326410310|gb|ADZ67374.1| Flagellar motor switch FliN protein [Brucella melitensis M28] gi|326553603|gb|ADZ88242.1| Flagellar motor switch FliN protein [Brucella melitensis M5-90] Length = 115 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++ + + ++ L G VI + + NG+ I E+ + Sbjct: 39 DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I Sbjct: 99 EDDSSRFGVSLTEIIGK 115 >gi|186896785|ref|YP_001873897.1| putative flagellar motor switch protein [Yersinia pseudotuberculosis PB1/+] gi|186699811|gb|ACC90440.1| putative flagellar motor switch protein [Yersinia pseudotuberculosis PB1/+] Length = 299 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143 N L++ +L + G S E + L+ E++L + +I+ Sbjct: 85 GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 144 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + + + I + I+ + N + F + I Sbjct: 145 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 192 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + + + K+ ++ L + +L V + ++++ TL +++ LK G Sbjct: 193 PHIDRLIDTIKTKSEKAVEKNVSLSERQLEYLVKKLPVTLTSQLSNINLTLAELMALKEG 252 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +I E + + ++S + Sbjct: 253 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 284 >gi|51597651|ref|YP_071842.1| flagellar motor switch protein. [Yersinia pseudotuberculosis IP 32953] gi|51590933|emb|CAH22589.1| Putative flagellar motor switch protein [Yersinia pseudotuberculosis IP 32953] Length = 303 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143 N L++ +L + G S E + L+ E++L + +I+ Sbjct: 89 GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 148 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + + + I + I+ + N + F + I Sbjct: 149 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 196 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + + + K+ ++ L + +L V + ++++ TL +++ LK G Sbjct: 197 PHIDRLIDTIKTKSEKAVEKNVSLSERQLEYLVKKLPVTLTSQLSNINLTLAELMALKEG 256 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +I E + + ++S + Sbjct: 257 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 288 >gi|254234793|ref|ZP_04928116.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|126166724|gb|EAZ52235.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] Length = 309 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + + + + L + TL+ G ++ + AN + + EL R+ Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293 Query: 294 KNYTIRITDRINFDQ 308 +R+T D+ Sbjct: 294 DRLGVRVTRLFGHDE 308 >gi|319795615|ref|YP_004157255.1| type III secretion system apparatus protein yscq/hrcq [Variovorax paradoxus EPS] gi|315598078|gb|ADU39144.1| type III secretion system apparatus protein YscQ/HrcQ [Variovorax paradoxus EPS] Length = 379 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 43/137 (31%), Gaps = 7/137 (5%) Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA--- 232 + ++ I A + + + + S+ + + A Sbjct: 244 TPLDAAIVVS--AQIGRRAGFRLFAFAEGSRITIQQSLHSAMKQDPAAPIAAAESGASLP 301 Query: 233 -RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK-TCAILSANGKEIYSCELG 290 + L V + + + +L ++ L+ G V + + A+G + L Sbjct: 302 IDRLDALEVMLRFEVGDIELSLGELKALRPGHVFDLGQPLNRSPIRILAHGNVLGKGYLV 361 Query: 291 RVGKNYTIRITDRINFD 307 VG +R+++ + Sbjct: 362 AVGDRLGVRVSEFAPGE 378 >gi|253988530|ref|YP_003039886.1| type III secretion system protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637888|emb|CAR66517.1| type iii secretion component protein sctq [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779980|emb|CAQ83141.1| type iii secretion component protein sctq [Photorhabdus asymbiotica] Length = 309 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L +++ + + L + +L+ G ++ + N K + S L + Sbjct: 235 LNSLEIHVSFEVGRQTLDLHTLTSLQPGSLLDLGVPPDGEVRILVNQKCLGSGRLVDIQG 294 Query: 295 NYTIRITDRINFDQK 309 +R+ +R+ +++ Sbjct: 295 RLGVRV-ERLAMEKE 308 Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 13/113 (11%), Positives = 25/113 (22%), Gaps = 22/113 (19%) Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 S+ + L P I Q + Sbjct: 112 APSSSACVLLRFERQ--GATLPLWLTEPS----PLLAILPKRQPG--------------E 151 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF--LHREKTCAILSANGKEIY 285 + + + + TL + TL+ G V+ + T + G Sbjct: 152 YLTIPLLLSLQWGAINLTLNEFRTLESGDVLLLPPQQQPDTPLLGYLEGHPWA 204 >gi|218892350|ref|YP_002441217.1| type III secretion system protein [Pseudomonas aeruginosa LESB58] gi|218772576|emb|CAW28359.1| translocation protein in type III secretion [Pseudomonas aeruginosa LESB58] Length = 309 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + + + + L + TL+ G ++ + AN + + EL R+ Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293 Query: 294 KNYTIRITDRINFDQ 308 +R+T D+ Sbjct: 294 DRLGVRVTRLFGHDE 308 >gi|107101126|ref|ZP_01365044.1| hypothetical protein PaerPA_01002158 [Pseudomonas aeruginosa PACS2] gi|254240039|ref|ZP_04933361.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|126193417|gb|EAZ57480.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] Length = 309 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + + + + L + TL+ G ++ + AN + + EL R+ Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293 Query: 294 KNYTIRITDRINFDQ 308 +R+T D+ Sbjct: 294 DRLGVRVTRLFGHDE 308 >gi|23499886|ref|NP_699326.1| flagellar motor switch protein FliN [Brucella suis 1330] gi|23463461|gb|AAN33331.1| flagellar motor switch protein FliN, putative [Brucella suis 1330] Length = 106 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++ + + ++ L G VI + + NG+ I E+ + Sbjct: 30 DLIMGIPVDVQVVLGGTTMPVSSLMKLGCGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 89 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I Sbjct: 90 EDDSSRFGVSLTEIIGK 106 >gi|17989457|ref|NP_542090.1| flagellar motor switch protein FLIN [Brucella melitensis bv. 1 str. 16M] gi|62317076|ref|YP_222929.1| flagellar motor switch protein FliN [Brucella abortus bv. 1 str. 9-941] gi|83269069|ref|YP_418360.1| flagellar motor switch FliN [Brucella melitensis biovar Abortus 2308] gi|161620209|ref|YP_001594095.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365] gi|225685984|ref|YP_002733956.1| flagellar motor switch protein FliN [Brucella melitensis ATCC 23457] gi|254731810|ref|ZP_05190388.1| Flagellar motor switch FliN protein [Brucella abortus bv. 4 str. 292] gi|256014913|ref|YP_003104922.1| flagellar motor switch protein FliN [Brucella microti CCM 4915] gi|17985336|gb|AAL54354.1| flagellar motor switch protein flin [Brucella melitensis bv. 1 str. 16M] gi|62197269|gb|AAX75568.1| flagellar motor switch protein FliN, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939343|emb|CAJ12288.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Brucella melitensis biovar Abortus 2308] gi|161337020|gb|ABX63324.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365] gi|225642089|gb|ACO02002.1| flagellar motor switch protein FliN [Brucella melitensis ATCC 23457] gi|255997573|gb|ACU49260.1| flagellar motor switch protein FliN [Brucella microti CCM 4915] Length = 106 Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++ + + ++ L G VI + + NG+ I E+ + Sbjct: 30 DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 89 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I Sbjct: 90 EDDSSRFGVSLTEIIGK 106 >gi|296535009|ref|ZP_06897289.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] gi|296264664|gb|EFH11009.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] Length = 93 Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 1/91 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 ++S + + + VN+ + K+ + + L G VI F + Sbjct: 1 MSESAPTENPFLAERKPRIMDIPVNVQVVLGNKRLPMAALFNLSRGSVIEFDKKVGEPID 60 Query: 277 LSANGKEIYSCEL-GRVGKNYTIRITDRINF 306 L AN + I E+ +I IT+ ++ Sbjct: 61 LMANERLIARGEIQITDDGRLSISITEIVSS 91 >gi|27550058|gb|AAO18041.1| LscQ [Photorhabdus luminescens] Length = 309 Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 25/70 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 L V++ + + L+ + +L+ G ++ + N K + S L + Sbjct: 233 TDLNDLEVHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGVVRILVNQKCLGSGRLVDI 292 Query: 293 GKNYTIRITD 302 +RI Sbjct: 293 EGRLGVRIEH 302 >gi|238762375|ref|ZP_04623346.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638] gi|238699360|gb|EEP92106.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638] Length = 105 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 30/90 (33%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 ++ + + S+ ++ V + + L +++++ VI Sbjct: 3 FSVPTASVPAVDNSQHEQQRKISLFSRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKL 62 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + NG E+ V + Y +RI Sbjct: 63 AGEPLDIKINGIMFGQAEVVVVNEKYGLRI 92 >gi|49083573|gb|AAT51064.1| PA1694 [synthetic construct] Length = 310 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + + + + L + TL+ G ++ + AN + + EL R+ Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293 Query: 294 KNYTIRITDRINFDQ 308 +R+T D+ Sbjct: 294 DRLGVRVTRLFGHDE 308 >gi|149203109|ref|ZP_01880080.1| surface presentation of antigens (SPOA) protein [Roseovarius sp. TM1035] gi|149143655|gb|EDM31691.1| surface presentation of antigens (SPOA) protein [Roseovarius sp. TM1035] Length = 98 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 4/96 (4%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + +E ++ + + I + + ++D++ L V+ R Sbjct: 1 MDNKTGGNETHVNDLQNPFSSVPIEITVSVGKARPLIRDLLKLGKNAVLVLDRRVDDAVE 60 Query: 277 LSANGKEIYSCEL----GRVGKNYTIRITDRINFDQ 308 L + I +L G +R+T+ N Sbjct: 61 LYVGERLIARGQLEELAGDQQGQIAVRVTEVANLQD 96 >gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14] gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter hamburgensis X14] Length = 87 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 25/75 (33%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++V++ + + V+ L G +I E+ + AN + S + Sbjct: 11 LDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVVVNRN 70 Query: 295 NYTIRITDRINFDQK 309 + + + Sbjct: 71 RIAVEVKQMLPRTPD 85 >gi|116049644|ref|YP_791551.1| type III secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115584865|gb|ABJ10880.1| translocation protein in type III secretion [Pseudomonas aeruginosa UCBPP-PA14] Length = 309 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + + + + L + TL+ G ++ + AN + + EL R+ Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGELVRLQ 293 Query: 294 KNYTIRITDRINFDQ 308 +R+T D+ Sbjct: 294 DRLGVRVTRLFGHDE 308 >gi|77464888|ref|YP_354392.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1] gi|126463730|ref|YP_001044844.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] gi|77389306|gb|ABA80491.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1] gi|126105394|gb|ABN78072.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] Length = 88 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 4/75 (5%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290 Q+ + I + + +++++ L+ V+P R L K I EL G Sbjct: 9 LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDKLIGRGELTELEG 68 Query: 291 RVGKNYTIRITDRIN 305 +R+T+ N Sbjct: 69 EQAGQLAVRLTEVAN 83 >gi|15596891|ref|NP_250385.1| type III secretion system protein [Pseudomonas aeruginosa PAO1] gi|9947667|gb|AAG05083.1|AE004596_9 translocation protein in type III secretion [Pseudomonas aeruginosa PAO1] Length = 309 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + + + + L + TL+ G ++ + AN + + EL R+ Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293 Query: 294 KNYTIRITDRINFDQ 308 +R+T D+ Sbjct: 294 DRLGVRVTRLFGHDE 308 >gi|163844318|ref|YP_001621973.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445] gi|163675041|gb|ABY39151.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445] Length = 106 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++ + + ++ L +G VI + + NG+ I E+ + Sbjct: 30 DLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 89 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I Sbjct: 90 EDDSPRFGVSLTEIIGK 106 >gi|296389922|ref|ZP_06879397.1| type III secretion system protein [Pseudomonas aeruginosa PAb1] Length = 309 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + + + + L + TL+ G ++ + AN + + EL R+ Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293 Query: 294 KNYTIRITDRINFDQ 308 +R+T D+ Sbjct: 294 DRLGVRVTRLFGHDE 308 >gi|313110380|ref|ZP_07796269.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] gi|310882771|gb|EFQ41365.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] Length = 309 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + + + + L + TL+ G ++ + AN + + EL R+ Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGELVRLQ 293 Query: 294 KNYTIRITDRINFDQ 308 +R+T D+ Sbjct: 294 DRLGVRVTRLFGHDE 308 >gi|300024613|ref|YP_003757224.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526434|gb|ADJ24903.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium denitrificans ATCC 51888] Length = 140 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 19/60 (31%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V + + K + + L G V+ + NG I E+ + + Sbjct: 62 IAGLPVMMKVVLGSAKMPVATLAKLAKGSVVKLDKMVGDPVDILVNGHLIARGEVVILNE 121 >gi|312115254|ref|YP_004012850.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium vannielii ATCC 17100] gi|311220383|gb|ADP71751.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium vannielii ATCC 17100] Length = 120 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + ++ +++ + + V L G VIP + + NG+ I E+ + Sbjct: 41 ERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPLDRKVGDAVDVMINGRIIAKGEIVVL 100 Query: 293 GK---NYTIRITDRIN 305 + + + +T+ I+ Sbjct: 101 DEEGSRFGVTLTEMID 116 >gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255] gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter winogradskyi Nb-255] Length = 97 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 26/76 (34%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++V++ + + V+ L G +I E+ + AN + S + Sbjct: 21 LDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVMVNRN 80 Query: 295 NYTIRITDRINFDQKS 310 T+ + + Sbjct: 81 RITVEVKQMLPRAPDR 96 >gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium azorense Az-Fu1] gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium azorense Az-Fu1] Length = 83 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + ++ + ++ +K G +IP + I+ E+ + Sbjct: 8 KLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIGEMTNI 67 Query: 293 GKNYTIRITDRINFD 307 + Y IRI D I D Sbjct: 68 NEKYGIRIVDLIKED 82 >gi|323139659|ref|ZP_08074701.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242] gi|322395091|gb|EFX97650.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242] Length = 124 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%) Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + + + ++ V + + + ++ L G VIP HR + NG Sbjct: 32 DTDKSQLRRI-DSILRIPVVVQVVVGSATLPVSSLLKLGRGAVIPLDHRVGDPVDIVVNG 90 Query: 282 KEIYSCELGRV---GKNYTIRITDRINFDQKSLK 312 + I E+ V G + + +T+ + L Sbjct: 91 RTIARGEVVVVEEDGARFGVSLTEICEPQNEQLN 124 >gi|327254532|gb|EGE66148.1| surface presentation of antigens family protein [Escherichia coli STEC_7v] Length = 123 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + ++ + L D++ + VI + N + E+ Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101 Query: 292 VGKNYTIRITD 302 V + Y +R+ + Sbjct: 102 VNEKYGLRVLE 112 >gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas subvibrioides ATCC 15264] gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas subvibrioides ATCC 15264] Length = 83 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 23/71 (32%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++V + + + ++ + G VIP E + AN + + Sbjct: 1 MSQIEAVDVELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARGMIEI 60 Query: 292 VGKNYTIRITD 302 I +T Sbjct: 61 REDRIAITVTR 71 >gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1] gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1] Length = 99 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 28/90 (31%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + S D P ++ V++ + + V+ L G +I E Sbjct: 3 MSSVTESSRDFGGPAVSTLDKVTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVK 62 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + AN I + + + + + + Sbjct: 63 VLANNLPIANGVVLVDRNRIAVEVKEMLPR 92 >gi|22127342|ref|NP_670765.1| hypothetical protein y3467 [Yersinia pestis KIM 10] gi|45442782|ref|NP_994321.1| flagellar motor switch protein [Yersinia pestis biovar Microtus str. 91001] gi|108810734|ref|YP_646501.1| flagellar motor switch protein [Yersinia pestis Nepal516] gi|145597803|ref|YP_001161879.1| flagellar motor switch protein [Yersinia pestis Pestoides F] gi|150260263|ref|ZP_01916991.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis CA88-4125] gi|165924818|ref|ZP_02220650.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939061|ref|ZP_02227613.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009073|ref|ZP_02229971.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212096|ref|ZP_02238131.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167419140|ref|ZP_02310893.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425206|ref|ZP_02316959.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466355|ref|ZP_02331059.1| flagellar motor switch protein [Yersinia pestis FV-1] gi|229837394|ref|ZP_04457557.1| Flagellar motor switch protein fliM [Yersinia pestis Pestoides A] gi|229840607|ref|ZP_04460766.1| Flagellar motor switch protein fliM [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842842|ref|ZP_04462994.1| Flagellar motor switch protein fliM [Yersinia pestis biovar Orientalis str. India 195] gi|229900931|ref|ZP_04516055.1| Flagellar motor switch protein fliM [Yersinia pestis Nepal516] gi|294502775|ref|YP_003566837.1| hypothetical protein YPZ3_0665 [Yersinia pestis Z176003] gi|21960425|gb|AAM87016.1|AE013950_1 hypothetical [Yersinia pestis KIM 10] gi|45437648|gb|AAS63198.1| Flagellar motor switch protein [Yersinia pestis biovar Microtus str. 91001] gi|108774382|gb|ABG16901.1| flagellar motor switch protein [Yersinia pestis Nepal516] gi|145209499|gb|ABP38906.1| flagellar motor switch protein [Yersinia pestis Pestoides F] gi|149289671|gb|EDM39748.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis CA88-4125] gi|165913017|gb|EDR31642.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923018|gb|EDR40169.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992412|gb|EDR44713.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206842|gb|EDR51322.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963134|gb|EDR59155.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055969|gb|EDR65750.1| lateral flagellar export/assembly protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682270|gb|EEO78362.1| Flagellar motor switch protein fliM [Yersinia pestis Nepal516] gi|229690109|gb|EEO82166.1| Flagellar motor switch protein fliM [Yersinia pestis biovar Orientalis str. India 195] gi|229696973|gb|EEO87020.1| Flagellar motor switch protein fliM [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705517|gb|EEO91527.1| Flagellar motor switch protein fliM [Yersinia pestis Pestoides A] gi|262360807|gb|ACY57528.1| hypothetical protein YPD4_0619 [Yersinia pestis D106004] gi|262364752|gb|ACY61309.1| hypothetical protein YPD8_0619 [Yersinia pestis D182038] gi|294353234|gb|ADE63575.1| hypothetical protein YPZ3_0665 [Yersinia pestis Z176003] gi|320016725|gb|ADW00297.1| Flagellar motor switch protein fliM [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 299 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143 N L++ +L + G S E + L+ E++L + +I+ Sbjct: 85 GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 144 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + + + I + I+ + N + F + I Sbjct: 145 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 192 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + + + K+ ++ L + +L V + ++++ TL +++ LK G Sbjct: 193 PHIDRLIDTIKTKNEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAELMALKEG 252 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +I E + + ++S + Sbjct: 253 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 284 >gi|218927898|ref|YP_002345773.1| putative flagellar motor switch protein [Yersinia pestis CO92] gi|115346509|emb|CAL19385.1| putative flagellar motor switch protein [Yersinia pestis CO92] Length = 303 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143 N L++ +L + G S E + L+ E++L + +I+ Sbjct: 89 GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 148 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + + + I + I+ + N + F + I Sbjct: 149 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 196 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + + + K+ ++ L + +L V + ++++ TL +++ LK G Sbjct: 197 PHIDRLIDTIKTKNEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAELMALKEG 256 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +I E + + ++S + Sbjct: 257 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 288 >gi|256059634|ref|ZP_05449831.1| Flagellar motor switch FliN protein [Brucella neotomae 5K33] gi|261323604|ref|ZP_05962801.1| flagellar motor switch protein FliN [Brucella neotomae 5K33] gi|261299584|gb|EEY03081.1| flagellar motor switch protein FliN [Brucella neotomae 5K33] Length = 115 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++ + + ++ L G VI + + NG+ I E+ + Sbjct: 39 DLIMGIPVDVQMVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98 Query: 293 GK---NYTIRITDRINF 306 + + +T+ I Sbjct: 99 EDDSSRFGVSLTEIIGK 115 >gi|28628131|gb|AAO34615.1| HrcQ [Erwinia chrysanthemi] Length = 413 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + R TL+D+ L G V+ A L + + EL V ++ Sbjct: 337 LALTVRCGYLTLTLQDLQQLAPGSVLTLQQATPGEATLYHGEQPLALGELVDVEGRLGLQ 396 Query: 300 ITDRINFDQKS 310 IT R+ D + Sbjct: 397 ITRRLGVDGEI 407 >gi|159184368|ref|NP_353589.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str. C58] gi|3913685|sp|Q57259|FLIN_AGRT5 RecName: Full=Flagellar motor switch protein FliN gi|39092|emb|CAA46543.1| FliN homologue [Agrobacterium tumefaciens] gi|1480839|gb|AAC45323.1| FliN [Agrobacterium tumefaciens] gi|2459704|gb|AAB71780.1| FliN [Agrobacterium tumefaciens] gi|159139682|gb|AAK86374.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str. C58] Length = 179 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 7/80 (8%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + +++ + + + +++L+ G I + + NG+ I E+ Sbjct: 99 MEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITV 158 Query: 292 VGK---NYTIRITDRINFDQ 308 + + +++ + ++ + Sbjct: 159 LEDDDTRFGVKLIEVLSTRK 178 >gi|260574385|ref|ZP_05842389.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp. SW2] gi|259023281|gb|EEW26573.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp. SW2] Length = 89 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GR 291 Q+ + I + + ++D++ L+ V+P R L + I EL G Sbjct: 11 SQVPIEITISVGKARPQVRDLLKLQRDAVLPLDRRVDDPVELYVGDRLIARGELQELDGD 70 Query: 292 VGKNYTIRITDRIN 305 +R+T+ N Sbjct: 71 QAGQLAVRLTEVAN 84 >gi|662861|gb|AAA79753.1| flagellar protein [Pseudomonas aeruginosa] Length = 65 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + ++ L+D++ ++ G VIP ++ ANG + +LG N ++I Sbjct: 1 LGATVVRRQLKLRDILHMQPGDVIPVEMP--EHMVMRANGVPAFKVKLGAHKGNLALQIL 58 Query: 302 DRINF 306 + + Sbjct: 59 EAVER 63 >gi|255654316|ref|ZP_05399725.1| flagellar motor switch protein [Clostridium difficile QCD-23m63] gi|296452606|ref|ZP_06894300.1| flagellar motor switch protein [Clostridium difficile NAP08] gi|296880982|ref|ZP_06904928.1| flagellar motor switch protein [Clostridium difficile NAP07] gi|296258567|gb|EFH05468.1| flagellar motor switch protein [Clostridium difficile NAP08] gi|296428003|gb|EFH13904.1| flagellar motor switch protein [Clostridium difficile NAP07] Length = 104 Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + VN+ I T+K+++ LK G +I + AN + E Sbjct: 27 NQNVFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESII 86 Query: 292 VGKNYTIRITDRINFD 307 + ++R++ + D Sbjct: 87 TNEKLSVRLSKIEDSD 102 >gi|85706152|ref|ZP_01037247.1| flagellar motor switch protein FliN [Roseovarius sp. 217] gi|85669316|gb|EAQ24182.1| flagellar motor switch protein FliN [Roseovarius sp. 217] Length = 100 Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 4/97 (4%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + S + + I + + +++D++ L V+ R Sbjct: 1 MMDVGPDDSGGFTSDLQNPFSSVPIEITVSVGKARPSIRDLLKLGKNAVLVLDRRVDDMV 60 Query: 276 ILSANGKEIYSCEL----GRVGKNYTIRITDRINFDQ 308 L + + L G +R+T+ N Sbjct: 61 ELYVGERLVARGRLEELDGDQQGQIAVRVTEVANLQD 97 >gi|328543417|ref|YP_004303526.1| surface presentation of antigens protein [polymorphum gilvum SL003B-26A1] gi|326413162|gb|ADZ70225.1| Putative surface presentation of antigens protein [Polymorphum gilvum SL003B-26A1] Length = 88 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 32/75 (42%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +++V+I + + + ++ + G VI E+ + AN + ++ +G+ Sbjct: 5 DEISVDISVVLGTTEMPVHQLLRMGRGAVIDLDVAEEDDVKIFANNTLVAKGQVVLLGER 64 Query: 296 YTIRITDRINFDQKS 310 + IT+ + + Sbjct: 65 IGVSITEVLMRAPEV 79 >gi|89069802|ref|ZP_01157137.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516] gi|89044603|gb|EAR50719.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516] Length = 96 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 4/73 (5%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290 + + I + + ++ +++TL V+P L + I EL G Sbjct: 17 LRAVPIEITIVVGRARPSVGELLTLDQNAVLPLDRGVDDPVELYVGDRLIARGELQEHAG 76 Query: 291 RVGKNYTIRITDR 303 +R+T+ Sbjct: 77 GEPGQLAVRLTEV 89 >gi|332559787|ref|ZP_08414109.1| FliN2 [Rhodobacter sphaeroides WS8N] gi|332277499|gb|EGJ22814.1| FliN2 [Rhodobacter sphaeroides WS8N] Length = 88 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 4/75 (5%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290 Q+ + I + + +++++ L+ V+P R L + I EL G Sbjct: 9 LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDRLIGRGELTELEG 68 Query: 291 RVGKNYTIRITDRIN 305 +R+T+ N Sbjct: 69 EQAGQLAVRLTEVAN 83 >gi|323975948|gb|EGB71042.1| flagellar motor switch protein FliN [Escherichia coli TW10509] Length = 123 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + ++ + L D++ + VI + N + E+ Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101 Query: 292 VGKNYTIRITD 302 V + Y +R+ + Sbjct: 102 VNEKYGLRVLE 112 >gi|306813324|ref|ZP_07447517.1| putative lateral flagellar motor switching and energizing component [Escherichia coli NC101] gi|305854087|gb|EFM54526.1| putative lateral flagellar motor switching and energizing component [Escherichia coli NC101] Length = 123 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + ++ + L D++ + VI + N + E+ Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101 Query: 292 VGKNYTIRITD 302 V + Y +R+ + Sbjct: 102 VNEKYGLRVLE 112 >gi|331645399|ref|ZP_08346503.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli M605] gi|331045561|gb|EGI17687.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli M605] Length = 283 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKSHNGFPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + SSF +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|34498080|ref|NP_902295.1| surface presentation of antigens protein SpaO [Chromobacterium violaceum ATCC 12472] gi|34103935|gb|AAQ60295.1| surface presentation of antigens; secretory proteins [Chromobacterium violaceum ATCC 12472] Length = 296 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 59/228 (25%), Gaps = 21/228 (9%) Query: 93 SNFFIGCSNNLVITLLENLLG----ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S C L + + LG QL R + ++ + + + A Sbjct: 79 SELIAACEAPLSWPVADMPLGRIVAGERREGSQLPQRPMLRMDTPQGEVWLEKAPAPAEA 138 Query: 149 CISTTQESSP---NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI---ENVASSFVLIIP 202 P + + + + T+ ++ Sbjct: 139 ARDRVPGWLPMPLRFLLGDSMVSPSLLRRAKAGDVLLISRPAQTVSCNGRAIGTY----- 193 Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 Q T + + + +L V ++ + + TL ++ L Sbjct: 194 QWTEEGIIMEWQNEMAAAAETRPL------ADLDRLPVRLEFVLQQSEVTLDELRELCRS 247 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 V+P + L ANG + EL ++ + + + Sbjct: 248 NVLPLSADAERRVELRANGALLGRGELVQLDGRLGVEVAQWLGGSGDV 295 >gi|170679793|ref|YP_001742353.1| lateral flagellar export/assembly protein LfiN [Escherichia coli SMS-3-5] gi|300936106|ref|ZP_07151046.1| putative flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|170517511|gb|ACB15689.1| lateral flagellar export/assembly protein LfiN [Escherichia coli SMS-3-5] gi|300458726|gb|EFK22219.1| putative flagellar motor switch protein FliN [Escherichia coli MS 21-1] Length = 123 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + ++ + L D++ + VI + N + E+ Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101 Query: 292 VGKNYTIRITD 302 V + Y +R+ + Sbjct: 102 VNEKYGLRVLE 112 >gi|238752882|ref|ZP_04614347.1| Flagellar switch protein [Yersinia rohdei ATCC 43380] gi|238708921|gb|EEQ01174.1| Flagellar switch protein [Yersinia rohdei ATCC 43380] Length = 112 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 4/100 (4%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 T L I S N S ++ + I F ++ V + + L +++T+ Sbjct: 6 ISTPLPVEPIEAPSVNDSLHEQQRKISLF----SRIPVTLTLEVASVDIPLSELMTVNSD 61 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 VI + NG E+ + + Y +RI Sbjct: 62 SVIELDKLAGEPLDIKVNGIMFGQAEVVVINEKYGLRIVS 101 >gi|325291949|ref|YP_004277813.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3] gi|45479284|gb|AAS66686.1| FliN [Agrobacterium sp. H13-3] gi|325059802|gb|ADY63493.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3] Length = 179 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 7/80 (8%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + +++ + + + +++L+ G I + + NG+ I E+ Sbjct: 99 MDLIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITV 158 Query: 292 VGK---NYTIRITDRINFDQ 308 + + +++ + ++ + Sbjct: 159 LEDDDTRFGVKLIEVMSTRK 178 >gi|37527632|ref|NP_930976.1| type III secretion system protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787067|emb|CAE16142.1| Type III secretion component protein SctQ [Photorhabdus luminescens subsp. laumondii TTO1] Length = 310 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 L V++ + + L+ + +L+ G ++ + N K + S L + Sbjct: 234 TDLNDLEVHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGAVRILVNQKCLGSGRLVDI 293 Query: 293 GKNYTIRITD 302 +R+ Sbjct: 294 EGRLGVRVEH 303 >gi|188494288|ref|ZP_03001558.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|188489487|gb|EDU64590.1| flagellar motor switch protein FliN [Escherichia coli 53638] Length = 127 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + ++ + L D++ + VI + N + E+ Sbjct: 46 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105 Query: 292 VGKNYTIRITD 302 V + Y +R+ + Sbjct: 106 VNEKYGLRVLE 116 >gi|218133675|ref|ZP_03462479.1| hypothetical protein BACPEC_01544 [Bacteroides pectinophilus ATCC 43243] gi|217991050|gb|EEC57056.1| hypothetical protein BACPEC_01544 [Bacteroides pectinophilus ATCC 43243] Length = 220 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 47/151 (31%), Gaps = 9/151 (5%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105 ++ VDI+ + + + V Q S N + N V Sbjct: 67 ATTLSSLLNQRVDITTPHVSISTWDDLARQYDRPCVMMQISYKEGIDGNNVLILRENDVK 126 Query: 106 TLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163 + + ++G + +L + LS + + + + + ++ + + SP + + Sbjct: 127 IITDLMMGGPGNADPNEELTDLHLSAIGEA-MNQMMGSAATSMSSMFNRKIDISPPVSNL 185 Query: 164 YDIDYLKKNTNRLSNEFV---TTINMNMTIE 191 ++ + + +TI Sbjct: 186 VEVYNNDTEDL--PDFLKGKFVEVMFKLTIG 214 >gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044] gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044] Length = 165 Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + ++I + K +++ ++ L+ G I R ++ L NG + EL +VG+N Sbjct: 97 NDIPLSIILEVGRLKMSMQTLMDLQPGNTIELDIRPESGIDLVVNGSRVAKGELLQVGEN 156 Query: 296 YTIRITD 302 IRI + Sbjct: 157 LGIRILE 163 >gi|311087551|gb|ADP67630.1| flagellar motor switch protein FliM [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 183 Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 1/133 (0%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82 G+ + KI + + K F + V++ S + G + Sbjct: 7 GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 66 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141 + + + FI N + +++ L G + R +++ E + K+ + Sbjct: 67 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 126 Query: 142 ISAVLNQCISTTQ 154 I+ ++ Sbjct: 127 ITNAFSEIYKKYF 139 >gi|311085822|gb|ADP65904.1| flagellar motor switch protein FliM [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 178 Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 1/133 (0%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82 G+ + KI + + K F + V++ S + G + Sbjct: 2 GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 61 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141 + + + FI N + +++ L G + R +++ E + K+ + Sbjct: 62 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 121 Query: 142 ISAVLNQCISTTQ 154 I+ ++ Sbjct: 122 ITNAFSEIYKKYF 134 >gi|170021378|ref|YP_001726332.1| surface presentation of antigens (SPOA) protein [Escherichia coli ATCC 8739] gi|218703507|ref|YP_002411026.1| lateral flagellar motor switch C ring FliN-like protein [Escherichia coli UMN026] gi|256020210|ref|ZP_05434075.1| Lateral flagellar export/assembly protein, Flagellar motor switch (C ring) (FliN-like) [Shigella sp. D9] gi|260853449|ref|YP_003227340.1| putative lateral flagellar motor switching and energizing component [Escherichia coli O26:H11 str. 11368] gi|260866395|ref|YP_003232797.1| putative lateral flagellar motor switching and energizing component [Escherichia coli O111:H- str. 11128] gi|300817290|ref|ZP_07097508.1| putative flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300898059|ref|ZP_07116428.1| putative flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|301646792|ref|ZP_07246646.1| putative flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|307136839|ref|ZP_07496195.1| putative lateral flagellar motor switching and energizing component [Escherichia coli H736] gi|307315215|ref|ZP_07594794.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|59889763|emb|CAH19118.1| Lateral flagellar export/assembly protein (FliN-like) [Escherichia coli] gi|169756306|gb|ACA79005.1| surface presentation of antigens (SPOA) protein [Escherichia coli ATCC 8739] gi|218430604|emb|CAR11470.1| Lateral flagellar export/assembly protein, Flagellar motor switch (C ring) (FliN-like) [Escherichia coli UMN026] gi|257752098|dbj|BAI23600.1| predicted lateral flagellar motor switching and energizing component [Escherichia coli O26:H11 str. 11368] gi|257762751|dbj|BAI34246.1| predicted lateral flagellar motor switching and energizing component [Escherichia coli O111:H- str. 11128] gi|284920027|emb|CBG33083.1| lateral flagellar export/assembly protein (FliN-like) [Escherichia coli 042] gi|300358237|gb|EFJ74107.1| putative flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|300530266|gb|EFK51328.1| putative flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|301075027|gb|EFK89833.1| putative flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|306905396|gb|EFN35933.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|315059470|gb|ADT73797.1| Lateral flagellar C-ring switch protein [Escherichia coli W] gi|315616846|gb|EFU97463.1| flagellar motor switch family protein [Escherichia coli 3431] gi|323158012|gb|EFZ44113.1| surface presentation of antigens family protein [Escherichia coli EPECa14] gi|323178513|gb|EFZ64091.1| surface presentation of antigens family protein [Escherichia coli 1180] gi|323181528|gb|EFZ66948.1| surface presentation of antigens family protein [Escherichia coli 1357] gi|323191517|gb|EFZ76778.1| surface presentation of antigens family protein [Escherichia coli RN587/1] gi|323379972|gb|ADX52240.1| surface presentation of antigens (SPOA) protein [Escherichia coli KO11] Length = 123 Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + ++ + L D++ + VI + N + E+ Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101 Query: 292 VGKNYTIRITD 302 V + Y +R+ + Sbjct: 102 VNEKYGLRVLE 112 >gi|327254533|gb|EGE66149.1| lateral flagellar export/assembly protein [Escherichia coli STEC_7v] Length = 283 Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + S F +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESRFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|163744332|ref|ZP_02151692.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] gi|161381150|gb|EDQ05559.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] Length = 154 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 7/74 (9%), Positives = 27/74 (36%), Gaps = 1/74 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + + ++ L G ++ + L + + + +L +V Sbjct: 76 NAMLNVGLDVQIVLGQARMPISRLLELTRGSIVELNRKIGAPVDLMVSDRLVARGDLVKV 135 Query: 293 G-KNYTIRITDRIN 305 G + +T + Sbjct: 136 GEDRLGVSLTQIVK 149 >gi|170680472|ref|YP_001742354.1| lateral flagellar export/assembly protein LfiM [Escherichia coli SMS-3-5] gi|300936107|ref|ZP_07151047.1| surface presentation of antigens protein [Escherichia coli MS 21-1] gi|170518190|gb|ACB16368.1| lateral flagellar export/assembly protein LfiM [Escherichia coli SMS-3-5] gi|300458727|gb|EFK22220.1| surface presentation of antigens protein [Escherichia coli MS 21-1] Length = 283 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + SSF +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|84502360|ref|ZP_01000496.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597] gi|84389172|gb|EAQ01969.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597] Length = 128 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 7/74 (9%), Positives = 27/74 (36%), Gaps = 1/74 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +NI + + + ++ L G +I + + N + + +L ++ Sbjct: 49 DAMLNVGLNIQIVLGRTRMPISQLLKLSRGSIIELDKKIGEPVDIVINDRLVARGDLVKL 108 Query: 293 G-KNYTIRITDRIN 305 + + + + + Sbjct: 109 DEERVGVSLIEIVK 122 >gi|283784011|ref|YP_003363876.1| lateral flagellar C-ring switch protein [Citrobacter rodentium ICC168] gi|282947465|emb|CBG87012.1| lateral flagellar C-ring switch protein [Citrobacter rodentium ICC168] Length = 123 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 27/73 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++ V + ++ + L D++ + VI + N + E+ V + Sbjct: 45 LKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVVVNE 104 Query: 295 NYTIRITDRINFD 307 Y +R+ + + Sbjct: 105 KYGLRVLEFNTQE 117 >gi|331671783|ref|ZP_08372579.1| flagellar switch protein [Escherichia coli TA280] gi|331070772|gb|EGI42131.1| flagellar switch protein [Escherichia coli TA280] Length = 127 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + ++ + L D++ + VI + N + E+ Sbjct: 46 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105 Query: 292 VGKNYTIRITD 302 V + Y +R+ + Sbjct: 106 VNEKYGLRVLE 116 >gi|323171042|gb|EFZ56691.1| surface presentation of antigens family protein [Escherichia coli LT-68] Length = 123 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + ++ + L D++ + VI + N + E+ Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101 Query: 292 VGKNYTIRITD 302 V + Y +R+ + Sbjct: 102 VNEKYGLRVLE 112 >gi|225850265|ref|YP_002730499.1| flagellar motor switch phosphatase FliY [Persephonella marina EX-H1] gi|225646313|gb|ACO04499.1| flagellar motor switch phosphatase FliY [Persephonella marina EX-H1] Length = 79 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +++TLK G +I + L + EL + Sbjct: 10 LKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGELIVANE 69 Query: 295 NYTIRITD 302 Y IR+ D Sbjct: 70 KYGIRVVD 77 >gi|83646013|ref|YP_434448.1| flagellar motor switch/type III secretory pathway protein [Hahella chejuensis KCTC 2396] gi|83634056|gb|ABC30023.1| Flagellar motor switch/type III secretory pathway protein [Hahella chejuensis KCTC 2396] Length = 397 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 25/68 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + L V + + + TL + +L GQ I L + I EL +VG Sbjct: 300 LHDLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTLLVQSQAIAEAELVQVGD 359 Query: 295 NYTIRITD 302 RIT Sbjct: 360 QIGARITR 367 >gi|260429524|ref|ZP_05783501.1| flagellar motor switch protein FliN [Citreicella sp. SE45] gi|260420147|gb|EEX13400.1| flagellar motor switch protein FliN [Citreicella sp. SE45] Length = 95 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 4/72 (5%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293 + + I + + ++D++ L G V+ R + L + I L G Sbjct: 19 VPIEITVSVGRARPLVRDLLKLGEGSVLTLDKRLEDPVELYVGDRLIGIGALEVLEGGEN 78 Query: 294 KNYTIRITDRIN 305 +R+T+ ++ Sbjct: 79 GQLAVRLTEVVD 90 >gi|291532052|emb|CBK97637.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium siraeum 70/3] Length = 400 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 1/88 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 PQ + ++ + + + + I I K +KD++ Sbjct: 312 PQPAVNYRNAQLAQFESFEAPLGSEQKENLQ-LLMDVPLQISVEIGSTKKKIKDILEFSQ 370 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCEL 289 G +I + + NG I ++ Sbjct: 371 GTIIELERQAGAPVDVMVNGNLIARGDV 398 >gi|332162917|ref|YP_004299494.1| flagellar switch protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667147|gb|ADZ43791.1| Flagellar switch protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862338|emb|CBX72498.1| flagellar motor switch protein fliN [Yersinia enterocolitica W22703] Length = 129 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ V + + L +++++ VI + NG E+ V + Sbjct: 52 SRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVNEK 111 Query: 296 YTIRI 300 Y +RI Sbjct: 112 YGLRI 116 >gi|293403338|ref|ZP_06647429.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412] gi|298378949|ref|ZP_06988830.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302] gi|331640695|ref|ZP_08341842.1| flagellar switch protein [Escherichia coli H736] gi|331645398|ref|ZP_08346502.1| flagellar switch protein [Escherichia coli M605] gi|331666528|ref|ZP_08367402.1| flagellar switch protein [Escherichia coli TA271] gi|332281372|ref|ZP_08393785.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|291429191|gb|EFF02211.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412] gi|298280062|gb|EFI21566.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302] gi|331040069|gb|EGI12277.1| flagellar switch protein [Escherichia coli H736] gi|331045560|gb|EGI17686.1| flagellar switch protein [Escherichia coli M605] gi|331065752|gb|EGI37636.1| flagellar switch protein [Escherichia coli TA271] gi|332103724|gb|EGJ07070.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 127 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + ++ + L D++ + VI + N + E+ Sbjct: 46 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105 Query: 292 VGKNYTIRITD 302 V + Y +R+ + Sbjct: 106 VNEKYGLRVLE 116 >gi|145284339|gb|ABP51920.1| AscQ [Aeromonas veronii bv. sobria] Length = 308 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 26/76 (34%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + QL + + + + + +L+ G +I + +NG + L + Sbjct: 232 TELEQLPIQVSFEVGRQTLDWHTLTSLQPGALIDLDTPLDGEVRIISNGHSLGVGRLVEI 291 Query: 293 GKNYTIRITDRINFDQ 308 +R+ N Q Sbjct: 292 QGRLGVRVERLDNESQ 307 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVI--PFLHREKTCAILSANGKEIYSCEL 289 + + + T+ ++ TL IG V+ P + ++ G+ C+ Sbjct: 158 PLTLSLQWGEMGLTMDELATLAIGDVLLPPPHPQLGQQLLICVEGRPFAYCQP 210 >gi|116626496|ref|YP_828652.1| surface presentation of antigens (SPOA) protein [Candidatus Solibacter usitatus Ellin6076] gi|116229658|gb|ABJ88367.1| surface presentation of antigens (SPOA) protein [Candidatus Solibacter usitatus Ellin6076] Length = 82 Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I+ ++ + T +DV+ L+ G VI + G S E+ + Sbjct: 10 LGDVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSGEIVVIEN 69 Query: 295 NYTIRITD 302 +RITD Sbjct: 70 TLGVRITD 77 >gi|293408349|ref|ZP_06652188.1| conserved hypothetical protein [Escherichia coli B354] gi|291471527|gb|EFF14010.1| conserved hypothetical protein [Escherichia coli B354] Length = 127 Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ V + ++ + L D++ + VI + N + E+ Sbjct: 46 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105 Query: 292 VGKNYTIRITD 302 V + Y +R+ + Sbjct: 106 VNEKYGLRVLE 116 >gi|157147124|ref|YP_001454443.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895] gi|157084329|gb|ABV14007.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895] Length = 132 Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 25/67 (37%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ V + + +L +++++ V+ + NG E+ + Sbjct: 55 SRIPVTLTLEVASVNISLAELMSVNSDSVVELDKMAGEPLDIKVNGILFGKAEVVVLNDK 114 Query: 296 YTIRITD 302 Y +RI + Sbjct: 115 YGLRIIE 121 >gi|331671784|ref|ZP_08372580.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli TA280] gi|331070773|gb|EGI42132.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli TA280] Length = 283 Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + SSF +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPTLIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|56695120|ref|YP_165467.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3] gi|56676857|gb|AAV93523.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3] Length = 109 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 28/92 (30%), Gaps = 4/92 (4%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + + + I + + ++D++ L V+ R + Sbjct: 10 PKRYRDMSDPQKPIEAKNPFNSVPIEITVSVGRARPLIRDLIGLGENAVLTLDKRVEDPV 69 Query: 276 ILSANGKEIYSCEL----GRVGKNYTIRITDR 303 L + + +L G +R+T+ Sbjct: 70 DLYVGDRLVARGQLEELTGEQAGQLAVRLTEI 101 >gi|323191518|gb|EFZ76779.1| lateral flagellar export/assembly protein [Escherichia coli RN587/1] Length = 283 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 66/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKSHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + SSF +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + + + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSMPLTLNVKIAELSLNVADLAQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|293408350|ref|ZP_06652189.1| predicted protein [Escherichia coli B354] gi|291471528|gb|EFF14011.1| predicted protein [Escherichia coli B354] Length = 283 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKDHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + SSF +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSLNVADLAQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|114764046|ref|ZP_01443285.1| flagellar motor switch protein FliN [Pelagibaca bermudensis HTCC2601] gi|114543404|gb|EAU46419.1| flagellar motor switch protein FliN [Roseovarius sp. HTCC2601] Length = 95 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 4/72 (5%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293 + + I + + ++D++ L G V+ R + L + I L G Sbjct: 19 VPIEITVSVGRARPLVRDLLKLGAGSVLTLDKRLEDPVELYVGDRLIGIGALEVVDGGEN 78 Query: 294 KNYTIRITDRIN 305 +R+T+ ++ Sbjct: 79 GQLAVRLTEVVD 90 >gi|167574618|ref|ZP_02367492.1| hypothetical protein BoklC_32595 [Burkholderia oklahomensis C6786] Length = 324 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 48/169 (28%), Gaps = 12/169 (7%) Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E++ A++ + V C P D + + ++ Sbjct: 161 TERRFARKVATNLVRVTAHC------IDPAATRADDAPIPRAAAHSRHPVLFVACDVEDA 214 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + + + + Q + + A + + ++ + Sbjct: 215 LRRTVGEIQFALDEGWQQRLFAGLTAGQRRGAPARKQ-PRLLAGALR---IRLTAQLMER 270 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + D++ LK G V+P A + A ++YS + + Sbjct: 271 RIPFGDLLHLKPGSVLPVRLHAN--ARVLAGDSQLYSASIVEHNGKLCL 317 >gi|261341514|ref|ZP_05969372.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316] gi|288316312|gb|EFC55250.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316] Length = 133 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 27/72 (37%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ V + + + +L +++T+ VI + NG E + Sbjct: 56 SRIPVTLTLEVASVEVSLAELMTVGHDSVIELDKMAGEPLDIKVNGILFGKAEAVVLNDK 115 Query: 296 YTIRITDRINFD 307 Y +RI + + + Sbjct: 116 YGLRILEFNSKE 127 >gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342] gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342] Length = 119 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 36/96 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio ammonificans HB-1] gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio ammonificans HB-1] Length = 83 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 ++L + + + + I + K V+ LK G +I + ++ N Sbjct: 2 EVEKELTEKL-ERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLND 60 Query: 282 KEIYSCELGRVGKNYTIRITDRI 304 +E EL + ++R+ D + Sbjct: 61 QEFGIGELIVINDKVSLRLVDLV 83 >gi|251789494|ref|YP_003004215.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae Ech1591] gi|247538115|gb|ACT06736.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae Ech1591] Length = 387 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + R TL+D+ L G V+ A L + + EL V ++ Sbjct: 311 LALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEATLYHGEQPLALGELVDVEGRLGLQ 370 Query: 300 ITDRINFDQKS 310 IT R+ D + Sbjct: 371 ITRRLGVDGEI 381 >gi|301646793|ref|ZP_07246647.1| surface presentation of antigens protein [Escherichia coli MS 146-1] gi|301075028|gb|EFK89834.1| surface presentation of antigens protein [Escherichia coli MS 146-1] Length = 283 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + S F +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAYTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|307136840|ref|ZP_07496196.1| surface presentation of antigens (SPOA) protein [Escherichia coli H736] gi|331640696|ref|ZP_08341843.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli H736] gi|331040070|gb|EGI12278.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli H736] Length = 283 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + S F +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|170021377|ref|YP_001726331.1| surface presentation of antigens (SPOA) protein [Escherichia coli ATCC 8739] gi|188494740|ref|ZP_03002010.1| lateral flagellar export/assembly protein [Escherichia coli 53638] gi|169756305|gb|ACA79004.1| surface presentation of antigens (SPOA) protein [Escherichia coli ATCC 8739] gi|188489939|gb|EDU65042.1| lateral flagellar export/assembly protein [Escherichia coli 53638] Length = 283 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + S F +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987] gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus NVH0597-99] gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus H3081.97] gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187] gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1] gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26] gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293] gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC 10987] gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus NVH0597-99] gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus H3081.97] gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus AH187] gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1] gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293] gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26] Length = 119 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 36/96 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 119 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 36/96 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99 >gi|323975947|gb|EGB71041.1| lfiM protein [Escherichia coli TW10509] Length = 283 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + S F +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESRFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQVKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|254973889|ref|ZP_05270361.1| flagellar motor switch protein [Clostridium difficile QCD-66c26] gi|255091274|ref|ZP_05320752.1| flagellar motor switch protein [Clostridium difficile CIP 107932] gi|255305249|ref|ZP_05349421.1| flagellar motor switch protein [Clostridium difficile ATCC 43255] gi|255312933|ref|ZP_05354516.1| flagellar motor switch protein [Clostridium difficile QCD-76w55] gi|255515692|ref|ZP_05383368.1| flagellar motor switch protein [Clostridium difficile QCD-97b34] gi|255648786|ref|ZP_05395688.1| flagellar motor switch protein [Clostridium difficile QCD-37x79] gi|260682006|ref|YP_003213291.1| flagellar motor switch protein [Clostridium difficile CD196] gi|260685604|ref|YP_003216737.1| flagellar motor switch protein [Clostridium difficile R20291] gi|306518903|ref|ZP_07405250.1| flagellar motor switch protein [Clostridium difficile QCD-32g58] gi|260208169|emb|CBA60487.1| flagellar motor switch protein [Clostridium difficile CD196] gi|260211620|emb|CBE01855.1| flagellar motor switch protein [Clostridium difficile R20291] Length = 104 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + VN+ I T+K+++ LK G +I + AN + E Sbjct: 27 NQNVFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESII 86 Query: 292 VGKNYTIRITDRINFD 307 + ++R++ + D Sbjct: 87 TNEKLSVRLSKIEDSD 102 >gi|255099392|ref|ZP_05328369.1| flagellar motor switch protein [Clostridium difficile QCD-63q42] Length = 104 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + VN+ I T+K+++ LK G +I + AN + E Sbjct: 27 NQNVFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESII 86 Query: 292 VGKNYTIRITDRINFD 307 + ++R++ + D Sbjct: 87 TNERLSVRLSKIEDPD 102 >gi|110632471|ref|YP_672679.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp. BNC1] gi|110283455|gb|ABG61514.1| surface presentation of antigens (SPOA) protein [Chelativorans sp. BNC1] Length = 354 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 10/91 (10%) Query: 222 NQSEDLID----------PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 D + P A L V +D + ++ TL+++ L G + Sbjct: 254 EIDSDWSEFGAGAIYDEPPLADPIEDLPVRLDFLFSTQRITLEELRALGPGATLRLNVDL 313 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ANG L ++G + ++++ Sbjct: 314 TRPVTILANGAPAGRGYLVQIGDHMGVQLSH 344 >gi|34498061|ref|NP_902276.1| translocation protein in type III secretion [Chromobacterium violaceum ATCC 12472] gi|34103916|gb|AAQ60276.1| translocation protein in type III secretion [Chromobacterium violaceum ATCC 12472] Length = 290 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 16/163 (9%), Positives = 47/163 (28%), Gaps = 5/163 (3%) Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-----NVASSFVL 199 +++ + + + ++ + + + + ++ N L Sbjct: 126 EMDETETAITAGVSLIAGWSMVEMASVRKLVVGDALLLRYSFDVAAGKFGLFNRQPIASL 185 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + ET + T +S + + L + + + + + L + L Sbjct: 186 MQDGETGIFTVETLMSDFEDWMDITPTLSPAEEQALGDAMITVTVEVAKMELPLHQLGNL 245 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + G ++ L A + I L + +RI Sbjct: 246 QPGTLLSSAVSSDGLVTLKAGSRPIARGTLLDIDSRLAVRIEH 288 >gi|307131229|ref|YP_003883245.1| HrcQ [Dickeya dadantii 3937] gi|306528758|gb|ADM98688.1| HrcQ [Dickeya dadantii 3937] Length = 382 Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + R TL+D+ L G V+ A L + + EL V ++ Sbjct: 306 LALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEATLYHGEQPLALGELVDVEGRLGLQ 365 Query: 300 ITDRINFDQKS 310 IT R+ D Sbjct: 366 ITRRLGVDGDI 376 >gi|256020211|ref|ZP_05434076.1| surface presentation of antigens (SPOA) protein [Shigella sp. D9] gi|260853450|ref|YP_003227341.1| putative lateral flagellar export/assembly protein [Escherichia coli O26:H11 str. 11368] gi|260866396|ref|YP_003232798.1| putative lateral flagellar export/assembly protein [Escherichia coli O111:H- str. 11128] gi|300817289|ref|ZP_07097507.1| surface presentation of antigens protein [Escherichia coli MS 107-1] gi|307315214|ref|ZP_07594793.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|331666529|ref|ZP_08367403.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli TA271] gi|332281373|ref|ZP_08393786.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|257752099|dbj|BAI23601.1| predicted lateral flagellar export/assembly protein [Escherichia coli O26:H11 str. 11368] gi|257762752|dbj|BAI34247.1| predicted lateral flagellar export/assembly protein [Escherichia coli O111:H- str. 11128] gi|300530265|gb|EFK51327.1| surface presentation of antigens protein [Escherichia coli MS 107-1] gi|306905395|gb|EFN35932.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|315059471|gb|ADT73798.1| Lateral flagellar C-ring switch protein [Escherichia coli W] gi|323158011|gb|EFZ44112.1| lateral flagellar export/assembly protein [Escherichia coli EPECa14] gi|323178512|gb|EFZ64090.1| lateral flagellar export/assembly protein [Escherichia coli 1180] gi|323181529|gb|EFZ66949.1| lateral flagellar export/assembly protein [Escherichia coli 1357] gi|323379971|gb|ADX52239.1| surface presentation of antigens (SPOA) protein [Escherichia coli KO11] gi|331065753|gb|EGI37637.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli TA271] gi|332103725|gb|EGJ07071.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 283 Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + S F +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|188997537|ref|YP_001931788.1| surface presentation of antigens (SPOA) protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932604|gb|ACD67234.1| surface presentation of antigens (SPOA) protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 87 Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +K E +N+ I + K + ++ LK G +I + Sbjct: 1 MHKDMEVDEIYKK--ISLIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVN 58 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +++ EL V + Y +R+ D I Sbjct: 59 IYFLNEKVGFGELVNVNEKYGVRLVDLIK 87 >gi|167576642|ref|ZP_02369516.1| hypothetical protein BthaT_00820 [Burkholderia thailandensis TXDOH] Length = 297 Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 52/182 (28%), Gaps = 13/182 (7%) Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 ET +T E++LA+R +++ + + I P + Sbjct: 122 ETAAHAPPIPETTTERRLAERLAGELARTVARAI-------PFDARPDGETPPPDGGHAR 174 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 + + + SS +++ + Sbjct: 175 RTHLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSV--RRERSLPST-- 230 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +L + + ++ DV+ L+ G V+P A + + ++++ + Sbjct: 231 RLRLKLTAQLMEMSVPFGDVLRLRPGTVLPVRLHA--PARVMTHDAQLFTASIAEHNGKL 288 Query: 297 TI 298 + Sbjct: 289 CL 290 >gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L] gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus AH820] gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201] gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L] gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus AH820] gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201] gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 119 Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 35/96 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W] gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W] Length = 119 Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 34/95 (35%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 5 VSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVE 64 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 65 KNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|108763665|ref|YP_633788.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] gi|108467545|gb|ABF92730.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] Length = 416 Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 32/99 (32%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 +L + + +++ L V+++ + L ++ LK G ++P Sbjct: 318 EGFSLTRAQGRGIPQESDMVVVNKQEEGMPPLPVDVEIELTRVMIPLSELAALKPGALLP 377 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + + EL + R+ + Sbjct: 378 LHINASEPVVLRVGDRAVARAELVEIEGEVGARVLALLP 416 >gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110] gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110] Length = 80 Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 23/72 (31%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++ V++ + + V+ L G +I E + AN + S + Sbjct: 4 LDKVTVDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLVDRN 63 Query: 295 NYTIRITDRINF 306 + + + Sbjct: 64 RIAVEVKQMLPR 75 >gi|114765261|ref|ZP_01444393.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Pelagibaca bermudensis HTCC2601] gi|114542396|gb|EAU45424.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Roseovarius sp. HTCC2601] Length = 114 Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 6/74 (8%), Positives = 25/74 (33%), Gaps = 1/74 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +N+ + + + ++ L G +I + N + + +L ++ Sbjct: 35 DAMLNVGLNVQIVLGQTRMPIAQLLKLSRGSIIELDKSIGQPVEVVINDRLVARGDLVKL 94 Query: 293 -GKNYTIRITDRIN 305 + + + + Sbjct: 95 EDDRLGVSLIEIVK 108 >gi|306813323|ref|ZP_07447516.1| Lateral flagellar export/assembly protein Flagellar motor switch C-ring (FliM-like) [Escherichia coli NC101] gi|305854086|gb|EFM54525.1| Lateral flagellar export/assembly protein Flagellar motor switch C-ring (FliM-like) [Escherichia coli NC101] Length = 283 Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKSHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + SSF +++ +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSLNVADLAQIKAGDILPIS 243 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269 >gi|283834475|ref|ZP_06354216.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] gi|291070022|gb|EFE08131.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] Length = 123 Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 41/109 (37%), Gaps = 8/109 (7%) Query: 202 PQETLLKTTLISLSSQNK-SENQSEDLIDPFARK-------TYQLNVNIDTRINLKKTTL 253 P++ L + ++ + + + +E L+ + ++ V + ++ + L Sbjct: 4 PEDILEQGFELAPEATTPPAPSVTETLVARLEDRFSESMSLLKRIPVTLTLEVSSVEVML 63 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 D++ + VI + N + E+ V + Y +R+ + Sbjct: 64 ADLLNIDDDTVIEMDKLAGEPLDIKVNNILLGKAEVVVVNEKYGLRVLE 112 >gi|167567194|ref|ZP_02360110.1| hypothetical protein BoklE_31835 [Burkholderia oklahomensis EO147] Length = 341 Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 49/169 (28%), Gaps = 12/169 (7%) Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E++ A++ + V C P D + + ++ Sbjct: 178 TERRFARKIATNLVRVTTHC------IDPAAMRADDAPIPRAAAHSRHPVLFVACDVEDA 231 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + + + + Q + + P A + + ++ + Sbjct: 232 LRRTVGKIQFALDEGWQQRLFAGLTAGQRRGAPARKQ-PRPLAGALR---IRLTAQLMER 287 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + D++ LK G V+P A + A ++YS + + Sbjct: 288 RIPFGDLLHLKPGSVLPVRLHAN--ARVLAGDSQLYSASIVEHNGKLCL 334 >gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 111 Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++D + +K+++TL+ G ++ + C + N + + E+ V Sbjct: 37 DLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQLDDCVDVRLNERTVARAEIVAV 96 Query: 293 GKNYTIRITDRINF 306 + IRI + + Sbjct: 97 DDRFGIRIVEIVEE 110 >gi|13475304|ref|NP_106868.1| translocation protein in type III secretion system, hrcQ [Mesorhizobium loti MAFF303099] gi|14026055|dbj|BAB52654.1| translocation protein in type III secretion system; HrcQ [Mesorhizobium loti MAFF303099] Length = 354 Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 27/76 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + L ++ + G + + + ANG+ I ++ R+ Sbjct: 279 EDLDDVEIMLVFECGRWPIPLGELRSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRI 338 Query: 293 GKNYTIRITDRINFDQ 308 G IR+ R+ + Sbjct: 339 GDTLGIRLRGRLGCND 354 >gi|15964405|ref|NP_384758.1| flagellar motor switch protein [Sinorhizobium meliloti 1021] gi|15073582|emb|CAC45224.1| Flagellar motor switch protein [Sinorhizobium meliloti 1021] Length = 210 Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 3/80 (3%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + +++ + + + ++ L G I + + NG+ I E+ Sbjct: 131 MDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 190 Query: 292 VGK---NYTIRITDRINFDQ 308 + + +++ + + Sbjct: 191 LEGDVTRFGVKLLEIKGTKK 210 >gi|83646773|ref|YP_435208.1| flagellar motor switch protein FliM-like protein [Hahella chejuensis KCTC 2396] gi|83634816|gb|ABC30783.1| flagellar motor switch protein FliM-like protein [Hahella chejuensis KCTC 2396] Length = 252 Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 23/174 (13%) Query: 129 TVEKKLAKRTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 V KL R + Q + L + + E + + + + Sbjct: 93 DVSHKLVARLVNQALSELAESWGAADPVEMESLAYAQEYASGWIQVSIAWPSASIV---- 148 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 L+ + + K + ++ R +L+ + R+ Sbjct: 149 ------------LLWSPKVVEKHFPAGAEFNRGALKP----LESLLRSCGELSAKLSVRL 192 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIR 299 N + T+ +V +L+ G VI H+ A++ +G + LG +++ Sbjct: 193 NSVELTINEVTSLQAGDVIKLDHKLTEPALVFTQDGALRFRASLGECEGRKSVK 246 >gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42] gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI] gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42] gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] Length = 119 Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 36/96 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|126734122|ref|ZP_01749869.1| surface presentation of antigens (SPOA) protein [Roseobacter sp. CCS2] gi|126716988|gb|EBA13852.1| surface presentation of antigens (SPOA) protein [Roseobacter sp. CCS2] Length = 94 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 4/73 (5%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290 + + + I + + ++D++ L ++P + + + + I EL G Sbjct: 14 LHNIPIEISVTVGKARPLVRDLLQLSENAILPLDSKIEDPVEIYIGDRLIARGELQEADG 73 Query: 291 RVGKNYTIRITDR 303 +R+T+ Sbjct: 74 AEPGQLAVRLTEV 86 >gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus G9241] gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus G9241] Length = 119 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 36/96 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3] gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3] gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1] Length = 119 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 35/96 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|222084856|ref|YP_002543385.1| flagellar motor switch protein [Agrobacterium radiobacter K84] gi|221722304|gb|ACM25460.1| flagellar motor switch protein [Agrobacterium radiobacter K84] Length = 179 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 28/73 (38%), Gaps = 3/73 (4%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +++ + + + ++ L G +I R ++ NG+ I E+ + Sbjct: 100 DLIMDIPIDVQIVLGSSRMQVSGLMNLTEGAIIALDKRIGEPVEITVNGRCIGRGEITVL 159 Query: 293 ---GKNYTIRITD 302 + I++ + Sbjct: 160 EHDDTRFGIKLIE 172 >gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273] gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272] gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272] gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273] Length = 119 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 35/96 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGGRNEAEKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSDIKVGIGEATVMDEKFGIIISEI 99 >gi|2916786|emb|CAA11953.1| flagellar C-ring protein [Sinorhizobium meliloti] Length = 198 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 3/80 (3%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + +++ + + + ++ L G I + + NG+ I E+ Sbjct: 119 MDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 178 Query: 292 VGK---NYTIRITDRINFDQ 308 + + +++ + + Sbjct: 179 LEGDVTRFGVKLLEIKGSKK 198 >gi|89111158|dbj|BAE80248.1| HrcQ [Acidovorax avenae subsp. avenae] Length = 309 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291 + V + I+ L ++ L G V+P + L +G+ + + L Sbjct: 223 ADIGGIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVV 282 Query: 292 VGKNYTIRI 300 +G+N +RI Sbjct: 283 IGENLGVRI 291 >gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB108] gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB102] gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1] gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al Hakam] gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB108] gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB102] gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1] Length = 119 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 35/96 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|255262994|ref|ZP_05342336.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62] gi|255105329|gb|EET48003.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62] Length = 94 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK- 294 + + + I T+++++ L ++ + + K I EL + Sbjct: 14 SDVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDT 73 Query: 295 ---NYTIRITDRINF 306 +R+T+ I+ Sbjct: 74 NISQLAVRLTEIIDP 88 >gi|260432139|ref|ZP_05786110.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis ITI-1157] gi|260415967|gb|EEX09226.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis ITI-1157] Length = 95 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 8/70 (11%), Positives = 25/70 (35%), Gaps = 4/70 (5%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293 + + + + + ++D++ + V+ R + L + + L G Sbjct: 18 IPIEVTVSVGRARPLIRDLLNMGENAVLTLDKRVEDPVDLYVGDQLVARGLLEEMEGEHA 77 Query: 294 KNYTIRITDR 303 +R+T+ Sbjct: 78 GQLAVRLTEI 87 >gi|227820848|ref|YP_002824818.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii NGR234] gi|227339847|gb|ACP24065.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii NGR234] Length = 210 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 7/75 (9%), Positives = 26/75 (34%), Gaps = 3/75 (4%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + +++ + + + ++ L G I + + NG+ I E+ Sbjct: 131 MDLIMDIPIDVQIVLGTSRMQVSGLMGLTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 190 Query: 292 VGK---NYTIRITDR 303 + + +++ + Sbjct: 191 LEGDVTRFGVKLIEI 205 >gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] Length = 109 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + N+D + TL++V+ LK G ++ + N + + E+ + N+ Sbjct: 26 DIMFNLDVELGRIAMTLREVLELKEGSIVELKKTAGESVDVMVNQCLLATAEIVVIEDNF 85 Query: 297 TIR 299 IR Sbjct: 86 AIR 88 >gi|237755392|ref|ZP_04584019.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium yellowstonense SS-5] gi|237692433|gb|EEP61414.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium yellowstonense SS-5] Length = 87 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 2/89 (2%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 ++ +N+ I + K + ++ LK G +I + Sbjct: 1 MHEDMEVDGIYKK--ISLIKDINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVN 58 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + ++ EL V Y R+ D I Sbjct: 59 IYFSNEKAGFGELVNVNGKYGARLVDLIK 87 >gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29] gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29] Length = 119 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 36/96 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009] gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1] gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris DX-1] gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris CGA009] gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris TIE-1] gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris DX-1] Length = 80 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 24/76 (31%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++V++ + + V+ L G +I E + AN I S + Sbjct: 4 LDKVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLVDRN 63 Query: 295 NYTIRITDRINFDQKS 310 + + + Sbjct: 64 RIAVEVKQMLPRSPDR 79 >gi|310816847|ref|YP_003964811.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare Y25] gi|308755582|gb|ADO43511.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare Y25] Length = 98 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + + + + + + ++++++ L+ V+ R + + I EL Sbjct: 18 ALWNVPIEVTIAVGRSRPSVRELLALEENAVLQLDRRIDDPVEIYIGDRLIARGELQESE 77 Query: 294 ---KNYTIRITDRINFDQKSL 311 +R+T+ + L Sbjct: 78 DEPGQLAVRLTEVATTPGEHL 98 >gi|307311547|ref|ZP_07591188.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C] gi|307318902|ref|ZP_07598333.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83] gi|17380371|sp|O54245|FLIN_RHIME RecName: Full=Flagellar motor switch protein FliN gi|306895316|gb|EFN26071.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83] gi|306899564|gb|EFN30193.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C] Length = 198 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 3/80 (3%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + +++ + + + ++ L G I + + NG+ I E+ Sbjct: 119 MDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 178 Query: 292 VGK---NYTIRITDRINFDQ 308 + + +++ + + Sbjct: 179 LEGDVTRFGVKLLEIKGTKK 198 >gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Bacillus anthracis str. A2012] gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0488] gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0442] gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0193] gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0389] gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0174] gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis Tsiankovskii-I] gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. CDC 684] gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0248] gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066] gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055] gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western North America USA6153] gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B] gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum] gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia 94] gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. Ames] gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. 'Ames Ancestor'] gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis str. Sterne] gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0488] gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0193] gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0442] gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0389] gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0174] gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis Tsiankovskii-I] gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. CDC 684] gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0248] Length = 119 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 35/96 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18] gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] Length = 80 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 24/76 (31%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++V++ + + V+ L G +I E + AN I S + Sbjct: 4 LDKVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLVDRN 63 Query: 295 NYTIRITDRINFDQKS 310 + + + Sbjct: 64 RIAVEVKRMLPRSPDR 79 >gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0465] gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0465] Length = 119 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 35/96 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|209964576|ref|YP_002297491.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|15077432|gb|AAK83160.1|AF332661_1 lateral flagellum motor switch protein FliNL [Rhodospirillum centenum] gi|209958042|gb|ACI98678.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 103 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 10/89 (11%), Positives = 30/89 (33%), Gaps = 2/89 (2%) Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 Q + + +L + Y V + + ++D++ L G ++ Sbjct: 7 IDAMFGGQAEPKKADSELPE--ISAIYDTEVEVSVVLGTSTIRVRDLLKLGRGAIVELDR 64 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298 + + + +G+ + E+ V + Sbjct: 65 KIDDLSDIIVSGRMVGRGEVTIVEDKIAV 93 >gi|46398253|gb|AAS91807.1| AscQ [Aeromonas hydrophila] Length = 308 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 24/69 (34%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + QL + + + + + +++ G +I + +NG + L + Sbjct: 232 TELEQLPIQVSFEVGRQTLDWHTLTSMQPGALIDLGTPLDGEVRIISNGHSLGVGRLVEI 291 Query: 293 GKNYTIRIT 301 +RI Sbjct: 292 QGRLGVRIE 300 Score = 35.8 bits (81), Expect = 8.6, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 2/47 (4%) Query: 245 RINLKKTTLKDVVTLKIGQVI--PFLHREKTCAILSANGKEIYSCEL 289 + T+ ++ L IG V+ P + + G+ C+ Sbjct: 164 QWGEMGLTMDELGALAIGDVLLPPPHPQLGQQLTICVEGRPFAYCQP 210 >gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 80 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 25/76 (32%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++V++ + + V+ L G +I E+ + N I S + Sbjct: 4 LDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMVNRN 63 Query: 295 NYTIRITDRINFDQKS 310 T+ + + Sbjct: 64 RITVEVKQMLPRAPDR 79 >gi|325519944|gb|EGC99199.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. TJI49] Length = 134 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 4/126 (3%) Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 I + + + +P L T + + + + +R Sbjct: 2 PAVPAWEITGRPSGNRLTVQRIREMP---LEPTRTDTSHTGAPDVSGAAASTGDTSRPLD 58 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKN 295 L V++ + L ++ L+ G VI L ANG I + +L VG+ Sbjct: 59 GLAVDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGQLIAVGQK 118 Query: 296 YTIRIT 301 +R+ Sbjct: 119 LGVRVV 124 >gi|218703508|ref|YP_002411027.1| lateral flagellar motor switch C-ring FliM-like protein [Escherichia coli UMN026] gi|293403339|ref|ZP_06647430.1| predicted protein [Escherichia coli FVEC1412] gi|298378950|ref|ZP_06988831.1| flagellar motor switch protein FliM [Escherichia coli FVEC1302] gi|300898058|ref|ZP_07116427.1| surface presentation of antigens protein [Escherichia coli MS 198-1] gi|59889764|emb|CAH19119.1| Lateral flagellar export/assembly protein (FliM-like) [Escherichia coli] gi|218430605|emb|CAR11471.1| Lateral flagellar export/assembly protein Flagellar motor switch C-ring (FliM-like) [Escherichia coli UMN026] gi|284920028|emb|CBG33084.1| lateral flagellar export/assembly protein (FliM-like) [Escherichia coli 042] gi|291429192|gb|EFF02212.1| predicted protein [Escherichia coli FVEC1412] gi|298280063|gb|EFI21567.1| flagellar motor switch protein FliM [Escherichia coli FVEC1302] gi|300358236|gb|EFJ74106.1| surface presentation of antigens protein [Escherichia coli MS 198-1] Length = 283 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 66/207 (31%), Gaps = 16/207 (7%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET--LLKT 209 + L+ I + + + + + +S +L+ T +L Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLADDEESSFRILLDDAHTDFILNL 184 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 185 IRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSLNVADLTQIKAGDILPISL 244 Query: 270 REKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 245 GETFPVAI--GQSELFSALIVEDKDKL 269 >gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5] gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB5] Length = 80 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 24/76 (31%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++V++ + + V+ L G +I E + AN I S + Sbjct: 4 LDKVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLVDRN 63 Query: 295 NYTIRITDRINFDQKS 310 + + + Sbjct: 64 RIAVEVKQMLTRSPDR 79 >gi|315616845|gb|EFU97462.1| lateral flagellar export/assembly protein [Escherichia coli 3431] gi|323171043|gb|EFZ56692.1| lateral flagellar export/assembly protein [Escherichia coli LT-68] Length = 249 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++ LL N G + L + E +L R I ++ + Sbjct: 42 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 101 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + L+ I + + + + + S F +++ +L Sbjct: 102 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 149 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S+ + +S + L + ++ +I + D+ +K G ++P Sbjct: 150 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 209 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296 E + E++S + Sbjct: 210 LGETFPVAI--GQSELFSALIVEDKDKL 235 >gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3] gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3] Length = 119 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 36/96 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + ++ +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEDFAGKRNEMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|146278776|ref|YP_001168935.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] gi|145557017|gb|ABP71630.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] Length = 88 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GR 291 Q+ + I + + +++++ L+ V+ R L + I EL G Sbjct: 10 SQVPIEITISVGRARPPVRELLKLQRDAVLALDRRVDDPVDLYVGDRLIGRGELTELEGD 69 Query: 292 VGKNYTIRITDRIN 305 +R+T+ N Sbjct: 70 QAGQLAVRLTEVAN 83 >gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4] gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048] gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621] gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis KBAB4] gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621] gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048] Length = 119 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 36/96 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99 >gi|171915735|ref|ZP_02931205.1| type III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 342 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 1/100 (1%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 T L + +P A QL V + + TL+ + +L G Sbjct: 240 AATWQDKKLTIQQFIMSDPAPTPAATEPLA-LVDQLEVELTFLVGTHAATLEQLRSLAPG 298 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 I + ANG+ I EL +G +RIT+ Sbjct: 299 ACIELPTPASQAVTICANGRAIGKGELLDIGNRIGVRITE 338 >gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579] gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus AH1134] gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264] gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus G9842] gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 200] gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar sotto str. T04001] gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407] gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676] gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185] gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2] gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4] gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24] gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550] gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W] gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876] gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579] gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus AH1134] gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus B4264] gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus G9842] gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876] gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W] gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550] gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24] gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4] gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2] gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185] gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676] gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407] gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar sotto str. T04001] gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 200] gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 119 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 35/96 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|330953281|gb|EGH53541.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 85 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + ++ + TL + + G V+PF + L NG+ I EL +G +R+ Sbjct: 20 TLICQLGSMELTLAQLREMAPGSVLPFTSQAHDEVDLMVNGRRIGRGELVTIGDGLGVRL 79 >gi|86749492|ref|YP_485988.1| hypothetical protein RPB_2372 [Rhodopseudomonas palustris HaA2] gi|86572520|gb|ABD07077.1| Surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris HaA2] Length = 80 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 23/76 (30%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++V++ + + V+ L G +I E + AN + S + Sbjct: 4 LDNVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPVASGVVLVDRN 63 Query: 295 NYTIRITDRINFDQKS 310 + + + Sbjct: 64 RIAVEVKQMLTRSPDR 79 >gi|326315334|ref|YP_004233006.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372170|gb|ADX44439.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax avenae subsp. avenae ATCC 19860] Length = 373 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291 + V + I+ L ++ L G V+P + L +G+ + + L Sbjct: 287 ADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVV 346 Query: 292 VGKNYTIRI 300 +G++ +RI Sbjct: 347 IGESLGVRI 355 >gi|283836562|ref|ZP_06356303.1| putative surface presentation of antigens protein [Citrobacter youngae ATCC 29220] gi|291067491|gb|EFE05600.1| putative surface presentation of antigens protein [Citrobacter youngae ATCC 29220] Length = 250 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 13/172 (7%) Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + L S S L + ++ + V + ++ + Sbjct: 84 FTHGWSALASA-SVQPRLSCPLILGWQELTYEQLRTCVPG-AVLILPSHLEFGEKS---- 137 Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTT 252 + L + +++ D + + + + + T Sbjct: 138 -CWLLAAETRIKLFIEQGKYTVSEIEQNVEDHIVQSHSPLNSLGDVRITLTFEVGCTSLT 196 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ +LK+G V+ C L ANG S L +G +RI + Sbjct: 197 FAELASLKVGDVLTADVLLNNCVKLRANGSVFASGNLLMLGDTPAVRIDKLL 248 >gi|237678818|emb|CAQ57545.1| RhcQ protein [Bradyrhizobium elkanii] Length = 371 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 28/77 (36%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 L + + ++ + ++ G V + ANG+ I ++ R Sbjct: 295 EADIDSLEITLVFECGRWPMSIGTLRSINEGHVFELGRSLDGPVDILANGQRIGRGDIVR 354 Query: 292 VGKNYTIRITDRINFDQ 308 +G+ +R+ R+ + Sbjct: 355 IGEELAVRLRGRLTVND 371 >gi|222082188|ref|YP_002541553.1| type III secretion apparatus protein, YscQ/HrcQ family [Agrobacterium radiobacter K84] gi|221726867|gb|ACM29956.1| type III secretion apparatus protein, YscQ/HrcQ family [Agrobacterium radiobacter K84] Length = 336 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 26/67 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + I + L ++ ++ G V P ++ + G+ I E+ + Sbjct: 266 IGDIPVKLVFDIARIELPLSELESIAEGHVFPLDRPKQDAVEIVTQGRIIGRGEIVTLDG 325 Query: 295 NYTIRIT 301 +R+T Sbjct: 326 LTAVRVT 332 >gi|75763361|ref|ZP_00743099.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900346|ref|ZP_04064575.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 4222] gi|228938877|ref|ZP_04101477.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar berliner ATCC 10792] gi|229109220|ref|ZP_04238819.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15] gi|74489152|gb|EAO52630.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228674230|gb|EEL29475.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15] gi|228820726|gb|EEM66751.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859233|gb|EEN03664.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 4222] Length = 109 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 30/86 (34%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + +++ + ++ TL DV LK+G V+ + Sbjct: 4 EDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDV 63 Query: 278 SANGKEIYSCELGRVGKNYTIRITDR 303 + ++ E + + + I I++ Sbjct: 64 YLSNMKVGIGEAIVMDEKFGIIISEI 89 >gi|291528000|emb|CBK93586.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium rectale M104/1] Length = 192 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 10/185 (5%), Positives = 49/185 (26%), Gaps = 3/185 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + I + + + +I+ + K + + + Sbjct: 5 SRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVPY 63 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVL 146 + N + + ++G + + + ++ + I+ + Sbjct: 64 TKGLDGTNLLIIKLNDALVIANLMMGGNGSNVSDMTLDEITLSAISEAMNQMCGTIATSM 123 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + ++ + L + + + + +T+ + + S + + P Sbjct: 124 SSLLNEPTDIGFPLINSSYQKTFDIPDELCNGTDIVKVTFRLTVGDLIDSDLLQLYPISI 183 Query: 206 LLKTT 210 + + Sbjct: 184 VKQII 188 >gi|126697799|ref|YP_001086696.1| flagellar motor switch protein [Clostridium difficile 630] gi|115249236|emb|CAJ67049.1| Flagellar motor switch protein FliN [Clostridium difficile] Length = 104 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + VN+ I T+K+++ LK G +I + AN + E Sbjct: 27 NQNVFNAKVNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESII 86 Query: 292 VGKNYTIRITDRINFD 307 + ++R++ + D Sbjct: 87 TNETLSVRLSKIEDSD 102 >gi|168263750|ref|ZP_02685723.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822288|ref|ZP_02834288.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341310|gb|EDZ28074.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347591|gb|EDZ34222.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|320086103|emb|CBY95877.1| Secretion system apparatus protein ssaQ [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 322 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|62180009|ref|YP_216426.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127642|gb|AAX65345.1| Secretion system apparatus SsaQ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714476|gb|EFZ06047.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 322 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 9/122 (7%) Query: 186 MNMTIENVASSFVLI-----IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 + + S VL+ + + L++ L+S + + + Sbjct: 197 FAIQLPGGIYSRVLLTEDNTMKFDELVQDIETLLASGSPMSKSDGTSSVELEQ----IPQ 252 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + I + + LK G V+P + N + I EL G + +RI Sbjct: 253 QVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRI 312 Query: 301 TD 302 T Sbjct: 313 TR 314 >gi|289805113|ref|ZP_06535742.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 275 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 199 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 258 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 259 NEFMVRITR 267 >gi|168463172|ref|ZP_02697103.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634559|gb|EDX52911.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 322 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|255023255|ref|ZP_05295241.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J1-208] Length = 176 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 4/130 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86 + ++ + K + +++ + + T F+ I + + +F Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107 Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I +I + E L G + + R LS E+ K + + Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166 Query: 146 LNQCISTTQE 155 L + Sbjct: 167 LKDSFKSVHP 176 >gi|167551613|ref|ZP_02345367.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168240931|ref|ZP_02665863.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448655|ref|YP_002045421.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197264125|ref|ZP_03164199.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389410|ref|ZP_03216021.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224584071|ref|YP_002637869.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|194406959|gb|ACF67178.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197242380|gb|EDY25000.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199601855|gb|EDZ00401.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323619|gb|EDZ11458.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205339429|gb|EDZ26193.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224468598|gb|ACN46428.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 322 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|145301462|ref|YP_001144301.1| type III secretion system protein [Aeromonas salmonicida subsp. salmonicida A449] gi|38201228|emb|CAD56763.1| ascQ protein [Aeromonas salmonicida subsp. salmonicida] gi|66947959|emb|CAE83096.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida] gi|142856344|gb|ABO92553.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 308 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 24/70 (34%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + QL + + + + + +L+ G +I + +NG + L + Sbjct: 232 TELDQLPIQVSFEVGRQTLDWHTLTSLQPGALIDLGTPLDGEVRIISNGHLLGVGRLVEI 291 Query: 293 GKNYTIRITD 302 +R+ Sbjct: 292 QGRLGVRVER 301 Score = 36.5 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 245 RINLKKTTLKDVVTLKIGQVI--PFLHREKTCAILSANGKEIYSCEL 289 + T+ ++ TL IG V+ P + ++ G+ C+ Sbjct: 164 QWGEMGLTMDELATLAIGDVLLPPPDPQLGQQLLICVEGRPFAYCQP 210 >gi|229102363|ref|ZP_04233071.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28] gi|228681010|gb|EEL35179.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28] Length = 109 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 31/86 (36%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ++ +++ + ++ TL DV LK+G V+ + Sbjct: 4 EDFAGKRNEVSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDV 63 Query: 278 SANGKEIYSCELGRVGKNYTIRITDR 303 + ++ E + + + I I++ Sbjct: 64 YLSNMKVGIGEAIVMDEKFGIIISEI 89 >gi|205352866|ref|YP_002226667.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857076|ref|YP_002243727.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272647|emb|CAR37557.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708879|emb|CAR33209.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|309243394|gb|ADO51970.1| SsaQ [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326627938|gb|EGE34281.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 322 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|56413611|ref|YP_150686.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362535|ref|YP_002142172.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127868|gb|AAV77374.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094012|emb|CAR59508.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 322 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|198245358|ref|YP_002215714.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939874|gb|ACH77207.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623461|gb|EGE29806.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 322 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|161614165|ref|YP_001588130.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363529|gb|ABX67297.1| hypothetical protein SPAB_01907 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 322 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|194445909|ref|YP_002040670.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404572|gb|ACF64794.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 322 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53] gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisA53] Length = 82 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 24/75 (32%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +++V++ + + V+ L G +I E + AN + S + Sbjct: 7 DKVSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASGMVLVDRNR 66 Query: 296 YTIRITDRINFDQKS 310 + + + Sbjct: 67 IAVEVKRMLPRSPDR 81 >gi|291524573|emb|CBK90160.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium rectale DSM 17629] Length = 192 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 10/185 (5%), Positives = 48/185 (25%), Gaps = 3/185 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + I + + + +I+ + K + + + Sbjct: 5 SRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVPY 63 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVL 146 + N + + ++G + + ++ + I+ + Sbjct: 64 TKGLDGTNLLIIKLNDALVIANLMMGGDGSNVSDMTLDEITLSAISEAMNQMCGTIATSM 123 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + ++ + L + + + + +T+ + + S + + P Sbjct: 124 SSLLNEPTDIGFPLINSSYQKTFDIPDELCNGTDIVKVTFRLTVGDLIDSDLLQLYPISI 183 Query: 206 LLKTT 210 + + Sbjct: 184 VKQII 188 >gi|254702551|ref|ZP_05164379.1| Flagellar motor switch FliN protein [Brucella suis bv. 3 str. 686] gi|261753129|ref|ZP_05996838.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686] gi|261742882|gb|EEY30808.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686] Length = 107 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 20/57 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + V++ + + ++ L G VI + + NG+ I E+ Sbjct: 39 DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEV 95 >gi|16760493|ref|NP_456110.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141747|ref|NP_805089.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162229|ref|ZP_03347939.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416629|ref|ZP_03349773.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213647286|ref|ZP_03377339.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854185|ref|ZP_03382717.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827207|ref|ZP_06545930.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511809|pir||AB0697 probable type III secretion protein ssaQ [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502789|emb|CAD01947.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137375|gb|AAO68938.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 322 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|204927926|ref|ZP_03219127.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323268|gb|EDZ08464.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 322 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|283784012|ref|YP_003363877.1| lateral flagellar C-ring switch protein [Citrobacter rodentium ICC168] gi|282947466|emb|CBG87013.1| lateral flagellar C-ring switch protein [Citrobacter rodentium ICC168] Length = 288 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 64/211 (30%), Gaps = 20/211 (9%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151 + +L++TLL N G +L + E +L R I A++ + Sbjct: 76 GHLAFDIDRSLLLTLLGNFYGLDASLTEINSQDNLPTKTETRLKSRLAMDIGALIFNKNT 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET------ 205 + + L+ + + + + +L+ T Sbjct: 136 SGVPLALKLDSS-----------TVQTHWAYQLTFVLGDNEDGGFRILLDDAHTDYILNL 184 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + ++ + + + L + + +I ++ D+ T++ G ++ Sbjct: 185 IRRSEHNQGKPAADKAAVAVEKKKLVKEIIHTLPLKMQVKIAELPLSVADLATIRPGDIL 244 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNY 296 PF + + E+++ + Sbjct: 245 PFTLPDSFPVSI--GKSELFTALIVEDKDKL 273 >gi|213581368|ref|ZP_03363194.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 244 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 168 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 227 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 228 NEFMVRITR 236 >gi|168239302|ref|ZP_02664360.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737381|ref|YP_002114431.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712883|gb|ACF92104.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288023|gb|EDY27410.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 322 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|89111191|dbj|BAE80280.1| HrcQ [Acidovorax avenae subsp. avenae] Length = 309 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291 + V + I+ L ++ L G V+P + L +G+ + + L Sbjct: 223 ADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVV 282 Query: 292 VGKNYTIRI 300 +G++ +RI Sbjct: 283 IGESLGVRI 291 >gi|238923825|ref|YP_002937341.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656] gi|238875500|gb|ACR75207.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656] Length = 197 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 10/185 (5%), Positives = 49/185 (26%), Gaps = 3/185 (1%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + I + + + +I+ + K + + + Sbjct: 10 SRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVPY 68 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVL 146 + N + + ++G + + + ++ + I+ + Sbjct: 69 TKGLDGTNLLIIKLNDALVIANLMMGGNGSNVSDMTLDEITLSAISEAMNQMCGTIATSM 128 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205 + ++ + L + + + + +T+ + + S + + P Sbjct: 129 SSLLNEPTDIGFPLINSSYQKTFDIPDELCNGTDIVKVTFRLTVGDLIDSDLLQLYPISI 188 Query: 206 LLKTT 210 + + Sbjct: 189 VKQII 193 >gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas stutzeri DSM 4166] Length = 279 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 73/246 (29%), Gaps = 28/246 (11%) Query: 44 KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103 + + F ++++++ Q + ++++ L Sbjct: 44 RLIGDYFLRNYRINLELNRIDVQEERGEE-------PDCIYRSAM----GKVGFSIDRAL 92 Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163 + LE G + +ST E+++ R I+ + + I + + Sbjct: 93 LTEALECYYGGTVIASQDTP--PISTSEQRMRNRLGMDITDIFARSILSGETFGKLDSYR 150 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223 D + E+V I SS L + E + + T Sbjct: 151 NDYEETSW-------EYVAEYEYISHITGSRSSIYLYLDTELVDELTSRLAGPPVPRLPG 203 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 + L V +D + + L V+ L++ ++ R + N ++ Sbjct: 204 NPI------DHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML--RPLDRYEVRINQQK 255 Query: 284 IYSCEL 289 ++ + Sbjct: 256 LFRGTI 261 >gi|27376929|ref|NP_768458.1| RhcQ protein [Bradyrhizobium japonicum USDA 110] gi|12620525|gb|AAG60801.1|AF322012_106 RhcQ [Bradyrhizobium japonicum] gi|27350071|dbj|BAC47083.1| RhcQ protein [Bradyrhizobium japonicum USDA 110] Length = 373 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 27/77 (35%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + + L + T+ G V + ANG+ I ++ R Sbjct: 297 EADIDSIEITLVFECGRWPMPLGTLRTINEGHVFELGRHLDGPVDIVANGQRIGRGDIVR 356 Query: 292 VGKNYTIRITDRINFDQ 308 +G+ +R+ R+ + Sbjct: 357 IGEELAVRLRGRLALND 373 >gi|159024056|gb|ABW87284.1| HrcQ [Xanthomonas fuscans subsp. fuscans] Length = 304 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + Q+ + A +L + + ++ +L + L+ GQ++ Sbjct: 203 MILEATPTMQHDTFEPDVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259 Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 L G+ I L VG++ ++I Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296 >gi|16764768|ref|NP_460383.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995052|ref|ZP_02576142.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|3024662|sp|P74860|SSAQ_SALTY RecName: Full=Secretion system apparatus protein SsaQ gi|16419939|gb|AAL20342.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327192|gb|EDZ13956.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246624|emb|CBG24434.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993307|gb|ACY88192.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157953|emb|CBW17448.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912403|dbj|BAJ36377.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129690|gb|ADX17120.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988305|gb|AEF07288.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 322 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + + + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|126730034|ref|ZP_01745846.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37] gi|126709414|gb|EBA08468.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37] Length = 95 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 4/72 (5%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293 + + I + + +++++ L G V+ + L K I L G Sbjct: 19 VPIEITVSVGKARPLVRELLQLNEGSVLALDKQLDDPVELYVGEKLIGIGVLEVVEGDGQ 78 Query: 294 KNYTIRITDRIN 305 +R+T+ ++ Sbjct: 79 GQLAVRLTEVVD 90 >gi|304321126|ref|YP_003854769.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis HTCC2503] gi|303300028|gb|ADM09627.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis HTCC2503] Length = 90 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL--GRV 292 Y + + + + K +LK++ V+P L R L +G+ I + EL G Sbjct: 13 LYDIELPVSVVVGRMKMSLKELSEWAPDTVVPLLSRADEPVELVVDGQVIATGELCEGDT 72 Query: 293 G-KNYTIRITDRINFDQK 309 G ++ +RI D + + Sbjct: 73 GPESLALRILDLKEENAE 90 >gi|218663132|ref|ZP_03519062.1| putative flagellar motor switch protein [Rhizobium etli IE4771] Length = 77 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 7/76 (9%), Positives = 29/76 (38%), Gaps = 3/76 (3%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK- 294 + +++ + + + ++ L G I + + NG+ I E+ + Sbjct: 1 MDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDND 60 Query: 295 --NYTIRITDRINFDQ 308 + +++ + ++ + Sbjct: 61 DTRFGVKLIEVLSTKK 76 >gi|322615098|gb|EFY12021.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619939|gb|EFY16812.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622251|gb|EFY19096.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627773|gb|EFY24563.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632882|gb|EFY29626.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636627|gb|EFY33330.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641180|gb|EFY37822.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644885|gb|EFY41418.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650279|gb|EFY46693.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655852|gb|EFY52154.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660178|gb|EFY56417.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665256|gb|EFY61444.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669513|gb|EFY65661.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673439|gb|EFY69541.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677367|gb|EFY73431.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679970|gb|EFY76009.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687442|gb|EFY83414.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194105|gb|EFZ79304.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198586|gb|EFZ83687.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202912|gb|EFZ87947.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208632|gb|EFZ93570.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211168|gb|EFZ96015.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217609|gb|EGA02324.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218958|gb|EGA03468.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223788|gb|EGA08092.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229411|gb|EGA13534.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232634|gb|EGA16730.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240328|gb|EGA24372.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242683|gb|EGA26704.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245894|gb|EGA29882.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252458|gb|EGA36305.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256477|gb|EGA40210.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260040|gb|EGA43665.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267196|gb|EGA50681.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271480|gb|EGA54901.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 322 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|134280726|ref|ZP_01767436.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|134247748|gb|EBA47832.1| conserved hypothetical protein [Burkholderia pseudomallei 305] Length = 310 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%) Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167 G + P + + E +R +++A L + ++ P E Sbjct: 128 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 187 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 ++ + + SS +++ + + Sbjct: 188 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 238 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 P + QL + + ++ DV+ L+ G V+P A + + ++++ Sbjct: 239 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 292 Query: 288 ELGRVGKNYTI 298 + + Sbjct: 293 SIAEHNGKLCL 303 >gi|126445346|ref|YP_001061224.1| hypothetical protein BURPS668_A0218 [Burkholderia pseudomallei 668] gi|126224837|gb|ABN88342.1| conserved hypothetical protein [Burkholderia pseudomallei 668] Length = 310 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%) Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167 G + P + + E +R +++A L + ++ P E Sbjct: 128 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 187 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 ++ + + SS +++ + + Sbjct: 188 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 238 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 P + QL + + ++ DV+ L+ G V+P A + + ++++ Sbjct: 239 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 292 Query: 288 ELGRVGKNYTI 298 + + Sbjct: 293 SIAEHNGKLCL 303 >gi|167743202|ref|ZP_02415976.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 14] Length = 213 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 135 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 193 Query: 295 NYTIRIT 301 + + Sbjct: 194 QLAVEVK 200 >gi|168233613|ref|ZP_02658671.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468585|ref|ZP_03074569.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197247910|ref|YP_002146624.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|194454949|gb|EDX43788.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197211613|gb|ACH49010.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205332385|gb|EDZ19149.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 322 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + + + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271] gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271] Length = 119 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 36/96 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|323186822|gb|EFZ72142.1| flagellar motor switch protein fliN domain protein [Escherichia coli RN587/1] Length = 102 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 17/48 (35%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 + V + + + T+K+++ L G V+ + N Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102 >gi|167923337|ref|ZP_02510428.1| type III secretion system protein BsaV [Burkholderia pseudomallei BCC215] Length = 335 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 257 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 315 Query: 295 NYTIRIT 301 + + Sbjct: 316 QLAVEVK 322 >gi|289806090|ref|ZP_06536719.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 74 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 19/54 (35%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S ++ ++ D R+ + + L ++ LK G V+P Sbjct: 3 ENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPA 56 >gi|125657199|gb|ABN48687.1| hypothetical protein Bpse6_01001805 [Burkholderia pseudomallei] Length = 289 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%) Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167 G + P + + E +R +++A L + ++ P E Sbjct: 107 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 166 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 ++ + + SS +++ + + Sbjct: 167 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 217 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 P + QL + + ++ DV+ L+ G V+P A + + ++++ Sbjct: 218 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 271 Query: 288 ELGRVGKNYTI 298 + + Sbjct: 272 SIAEHNGKLCL 282 >gi|1526984|emb|CAA68198.1| secretion system apparatus, SsaQ [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 216 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + + + + LK G V+P + N + I EL G Sbjct: 140 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 199 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 200 NEFMVRITR 208 >gi|134282102|ref|ZP_01768808.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] gi|134246631|gb|EBA46719.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] Length = 331 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 253 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 311 Query: 295 NYTIRIT 301 + + Sbjct: 312 QLAVEVK 318 >gi|167725908|ref|ZP_02409144.1| hypothetical protein BpseD_43225 [Burkholderia pseudomallei DM98] Length = 289 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%) Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167 G + P + + E +R +++A L + ++ P E Sbjct: 107 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 166 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 ++ + + SS +++ + + Sbjct: 167 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 217 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 P + QL + + ++ DV+ L+ G V+P A + + ++++ Sbjct: 218 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 271 Query: 288 ELGRVGKNYTI 298 + + Sbjct: 272 SIAEHNGKLCL 282 >gi|167850203|ref|ZP_02475711.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei B7210] gi|254193901|ref|ZP_04900333.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei S13] gi|169650652|gb|EDS83345.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei S13] Length = 327 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 249 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 307 Query: 295 NYTIRIT 301 + + Sbjct: 308 QLAVEVK 314 >gi|76818002|ref|YP_335737.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710b] gi|254264677|ref|ZP_04955542.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] gi|76582475|gb|ABA51949.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710b] gi|254215679|gb|EET05064.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] Length = 319 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 241 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 299 Query: 295 NYTIRIT 301 + + Sbjct: 300 QLAVEVK 306 >gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 229 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 1/95 (1%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 ++NK + + Q+ V + + K T++ + + G+VIP + Sbjct: 134 AGNENKVHEHHPEDQKKSSSLCAQVPVTLTFILQKNKVTVEKLEKMYEGEVIPLEPSIEE 193 Query: 274 CAILSANGKEIYSCE-LGRVGKNYTIRITDRINFD 307 + AN I + LG + +T Sbjct: 194 RIEIRANNVRIARGKLLGMENGALGVELTQLYQSK 228 >gi|170738280|ref|YP_001779540.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] gi|169820468|gb|ACA95050.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] Length = 364 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 1/78 (1%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELG 290 +L + + I L + L+ G VI L A G+ I EL Sbjct: 285 QTSLDELELPVSFEIETVTLPLAQLSALRPGYVIELRGTLRDARIRLLAYGQLIGIGELV 344 Query: 291 RVGKNYTIRITDRINFDQ 308 VG+ +R+ D Sbjct: 345 TVGEQLGVRVIDVFGSHD 362 >gi|83646772|ref|YP_435207.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396] gi|83634815|gb|ABC30782.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396] Length = 111 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 1/95 (1%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + L N+ + DP + V +D + T+ ++ L V+ Sbjct: 16 VEEVILEPMNEGGAGDKLKSDPL-DLVKNVKVTLDVYLGDANLTVAELTALTSESVVKMN 74 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + L +GK + +L V + I+IT+ Sbjct: 75 KQLNDPIELLLDGKVVARGKLVAVDDVFGIQITET 109 >gi|238913179|ref|ZP_04657016.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 322 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + + + + LK G V+P + N + I EL G Sbjct: 246 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|259418090|ref|ZP_05742009.1| surface presentation of antigens protein [Silicibacter sp. TrichCH4B] gi|259346996|gb|EEW58810.1| surface presentation of antigens protein [Silicibacter sp. TrichCH4B] Length = 98 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 4/70 (5%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293 + V + + + ++D+V L ++ + + L + + +L G Sbjct: 21 VPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVARGQLEEMEGDQA 80 Query: 294 KNYTIRITDR 303 +R+T+ Sbjct: 81 GQLAVRLTEI 90 >gi|226195953|ref|ZP_03791539.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pakistan 9] gi|225931846|gb|EEH27847.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pakistan 9] Length = 327 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 249 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 307 Query: 295 NYTIRIT 301 + + Sbjct: 308 QLAVEVK 314 >gi|171319017|ref|ZP_02908144.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171095772|gb|EDT40725.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 329 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 1/75 (1%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYS 286 + +V + + + + TL ++ L+ GQ++ + G + Sbjct: 247 EQDVTMELEDRHVELSVELAICRLTLGELANLRAGQMLRLAKAADEMSVDIRYRGTRVAR 306 Query: 287 CELGRVGKNYTIRIT 301 L + +RI Sbjct: 307 GSLVEINGLLGVRID 321 >gi|254182911|ref|ZP_04889504.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|254299706|ref|ZP_04967155.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|157809502|gb|EDO86672.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|184213445|gb|EDU10488.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] Length = 282 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%) Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167 G + P + + E +R +++A L + ++ P E Sbjct: 100 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 159 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 ++ + + SS +++ + + Sbjct: 160 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 210 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 P + QL + + ++ DV+ L+ G V+P A + + ++++ Sbjct: 211 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 264 Query: 288 ELGRVGKNYTI 298 + + Sbjct: 265 SIAEHNGKLCL 275 >gi|53722559|ref|YP_111544.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|126458287|ref|YP_001076113.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|242311185|ref|ZP_04810202.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106b] gi|254186857|ref|ZP_04893373.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pasteur 52237] gi|52212973|emb|CAH39011.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|126232055|gb|ABN95468.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|157934541|gb|EDO90211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pasteur 52237] gi|242134424|gb|EES20827.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106b] Length = 323 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 245 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 303 Query: 295 NYTIRIT 301 + + Sbjct: 304 QLAVEVK 310 >gi|254511535|ref|ZP_05123602.1| Surface presentation of antigens protein [Rhodobacteraceae bacterium KLH11] gi|221535246|gb|EEE38234.1| Surface presentation of antigens protein [Rhodobacteraceae bacterium KLH11] Length = 95 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 34/91 (37%), Gaps = 8/91 (8%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++++ + +PF + + + + + ++D++ + V+ R + Sbjct: 1 MSDPQSRNPEKSNPFEA----VPIEVTVSVGRARPLIRDLLNMGENAVLTLDRRIEDPVD 56 Query: 277 LSANGKEIYSCEL----GRVGKNYTIRITDR 303 L + + L G +R+T+ Sbjct: 57 LYVGDQLVARGLLEEMEGDQAGQLAVRLTEI 87 >gi|296162489|ref|ZP_06845280.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. Ch1-1] gi|295887302|gb|EFG67129.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. Ch1-1] Length = 323 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 1/74 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILSANGKEIYSCELGRVG 293 + + + ++ ++ L+ G ++ F + L G EL + Sbjct: 247 IDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTLLCQGIPFARGELIDIE 306 Query: 294 KNYTIRITDRINFD 307 +R+T D Sbjct: 307 GAMGVRVTRLTQED 320 >gi|167574751|ref|ZP_02367625.1| RhcQ protein [Burkholderia oklahomensis C6786] Length = 104 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ + +TTL ++ ++ G V+ + A+G I E +G Sbjct: 32 LDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVTIGYGEFVEIGS 91 Query: 295 NYTIRITDR 303 + + Sbjct: 92 RVAVELIRM 100 >gi|126443367|ref|YP_001063162.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] gi|126222858|gb|ABN86363.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] Length = 323 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 245 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 303 Query: 295 NYTIRIT 301 + + Sbjct: 304 QLAVEVK 310 >gi|229132592|ref|ZP_04261440.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196] gi|228650824|gb|EEL06811.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196] Length = 119 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 35/96 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ L DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIKLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99 >gi|120609153|ref|YP_968831.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax citrulli AAC00-1] gi|120587617|gb|ABM31057.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax citrulli AAC00-1] gi|255047056|gb|AAW81013.2| HrcQ [Acidovorax citrulli] Length = 352 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291 + V + I+ + L ++ L G ++P + L +G+ + + L Sbjct: 267 TDIGGIRVPVAIEIDTARIRLDELAALDAGAIVPLAVAARDATVRLVCHGQVVGTGRLVV 326 Query: 292 VGKNYTIRI 300 +G + +RI Sbjct: 327 IGDHLGVRI 335 >gi|119385378|ref|YP_916434.1| surface presentation of antigens (SPOA) protein [Paracoccus denitrificans PD1222] gi|119375145|gb|ABL70738.1| surface presentation of antigens (SPOA) protein [Paracoccus denitrificans PD1222] Length = 85 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG---RV 292 Q+ V I R+ + T+ ++ L+ ++ + K I EL Sbjct: 11 DQIQVEITIRLGGTQLTVAELSRLRPDDILTLDQDMSDGVEICVGDKVIARGELVSGDET 70 Query: 293 GKNYTIRI 300 +RI Sbjct: 71 DNRLCVRI 78 >gi|217425190|ref|ZP_03456685.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 576] gi|217391795|gb|EEC31822.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 576] Length = 323 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 245 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 303 Query: 295 NYTIRIT 301 + + Sbjct: 304 QLAVEVK 310 >gi|167828748|ref|ZP_02460219.1| type III secretion system protein BsaV [Burkholderia pseudomallei 9] Length = 294 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 216 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 274 Query: 295 NYTIRIT 301 + + Sbjct: 275 QLAVEVK 281 >gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] Length = 98 Score = 52.7 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 34/71 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ + VN+ R+ K+ +KD+ L +G ++ + + + K++ E + Sbjct: 27 KQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFLDEKKVGIGEAILM 86 Query: 293 GKNYTIRITDR 303 +N+ I I++ Sbjct: 87 DENFGIVISEI 97 >gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus cytotoxicus NVH 391-98] Length = 119 Score = 52.7 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 1/92 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 +S + + + E +++ + ++ L DV LK+G V+ Sbjct: 9 SLMSLEEYAIQREEQAKAHI-DTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEVEKNL 67 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 68 GHKVDVYLSDIKVGIGEAIVMDEQFGIIISEI 99 >gi|254301455|ref|ZP_04968899.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] gi|157810889|gb|EDO88059.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] Length = 319 Score = 52.7 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 241 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 299 Query: 295 NYTIRIT 301 + + Sbjct: 300 QLAVEVK 306 >gi|271500422|ref|YP_003333447.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya dadantii Ech586] gi|270343977|gb|ACZ76742.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya dadantii Ech586] Length = 394 Score = 52.7 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 23/63 (36%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + R TL+D+ L G V+ A L + + EL V ++ Sbjct: 318 LALTVRCGYLTLTLQDLQQLAPGTVLTLQQAIPGEATLYHGEQPLAQGELVNVEGRLGLQ 377 Query: 300 ITD 302 IT Sbjct: 378 ITR 380 >gi|167915492|ref|ZP_02502583.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 112] Length = 215 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 137 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 195 Query: 295 NYTIRIT 301 + + Sbjct: 196 QLAVEVK 202 >gi|91782702|ref|YP_557908.1| putative type III secretion protein, FliN like [Burkholderia xenovorans LB400] gi|91686656|gb|ABE29856.1| Putative type III secretion protein, FliN like protein [Burkholderia xenovorans LB400] Length = 323 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 4/89 (4%) Query: 223 QSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILS 278 E + + + + ++ ++ L+ G ++ F + L Sbjct: 232 TDETQPVEMTSELLPIDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTLL 291 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307 G EL + +R+T D Sbjct: 292 CQGIPFARGELIDIEGALGVRVTRLTQED 320 >gi|188532667|ref|YP_001906464.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|188027709|emb|CAO95562.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 338 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 5/102 (4%) Query: 199 LIIPQETLLKTTL-ISLSSQNKSENQSEDLIDPFA----RKTYQLNVNIDTRINLKKTTL 253 L +P LL I L+S E+ ++ + + R+ L ++++ R TL Sbjct: 220 LQLPHHFLLNHLENIPLNSAGDDESTNDPQSEYLSGEESRRLASLPLSLEVRCGRTVMTL 279 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ L+ G V+ + A L I EL V + Sbjct: 280 GELQQLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 321 >gi|237510407|ref|ZP_04523122.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] gi|235002612|gb|EEP52036.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] Length = 319 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 241 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 299 Query: 295 NYTIRIT 301 + + Sbjct: 300 QLAVEVK 306 >gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803] gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803] Length = 119 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 37/96 (38%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++++ ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFARKRNEAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99 >gi|167820376|ref|ZP_02452056.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 91] Length = 233 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 155 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 213 Query: 295 NYTIRIT 301 + + Sbjct: 214 QLAVEVK 220 >gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC 2396] gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC 2396] Length = 318 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 1/105 (0%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L L+ ++ + + +D L + ++ + TL ++ + G Sbjct: 211 LDDHKLVLVTPMTSDTQHTPEPLDA-PSDLGNLELKLEFHLGSLNLTLAELSQMTEGAAF 269 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NG+ + CEL + R+ D + Sbjct: 270 DLGLSLEAPVAMKVNGQTLARCELVEIDGRLGARVVRLTGGDSEV 314 >gi|328545472|ref|YP_004305581.1| flagellar motor switch protein [polymorphum gilvum SL003B-26A1] gi|326415213|gb|ADZ72276.1| Probable flagellar motor switch protein [Polymorphum gilvum SL003B-26A1] Length = 136 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 3/83 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + VNI + + +++ L G VIP HR + NG+ + E+ V Sbjct: 53 DTILGIPVNIQVVLGSATMLVANLLKLGRGAVIPLNHRVGEPVDIVVNGRVVARGEVVVV 112 Query: 293 ---GKNYTIRITDRINFDQKSLK 312 + + +T+ I+ +L Sbjct: 113 EDDNSRFGVSLTEIISAQSTTLD 135 >gi|229588260|ref|YP_002870379.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] gi|229360126|emb|CAY46983.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] Length = 337 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 27/264 (10%), Positives = 67/264 (25%), Gaps = 40/264 (15%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 Y + L + + +S + + + W Sbjct: 110 YVRLLETDRTKAFGCRLSVSLGQTRVEGY----VWLSPESFLALCDAGPWRGRAG-PMPA 164 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + + + R + + + R + VL Q Sbjct: 165 SFRLAI------------AVTLGRLQLPIAQARSLRVGDVL--VLEQSF----------- 199 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 + ++ I++ + L + ++ E Sbjct: 200 --FLAQGNGYVQVGTH-------RLHGCIDDDSGPLCLTLTSIEETSVDEEFIAPHYAGE 250 Query: 222 NQSEDLIDPFARK-TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 E + D F + +L++ ++ R TL ++ L G V+ A L Sbjct: 251 EDDEPVTDVFGHEPFDELSMALNVRCGTLNLTLGELRNLAPGAVLGIAGYAPGMAGLYYG 310 Query: 281 GKEIYSCELGRVGKNYTIRITDRI 304 + I +L V ++++ + Sbjct: 311 DRPIGQGQLVEVDGRLGLQLSRVM 334 >gi|207108700|ref|ZP_03242862.1| flagellar motor switch protein FliY [Helicobacter pylori HPKX_438_CA4C1] Length = 57 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + IG V+ + + K I E+ V N+ I+ITD I ++ L+ + Sbjct: 1 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 57 >gi|167724227|ref|ZP_02407463.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei DM98] Length = 182 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 104 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 162 Query: 295 NYTIRIT 301 + + Sbjct: 163 QLAVEVK 169 >gi|229058413|ref|ZP_04196797.1| Flagellar motor switch protein FliN [Bacillus cereus AH603] gi|228719922|gb|EEL71512.1| Flagellar motor switch protein FliN [Bacillus cereus AH603] Length = 119 Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 35/96 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ L DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIQLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + ++ E + + + I I++ Sbjct: 64 EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99 >gi|323388135|gb|ADX60331.1| type III secretion protein RscQab [Pseudomonas fluorescens] Length = 330 Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 1/121 (0%) Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK-TYQLNVNID 243 + I++ + L + +SQ + E ++D F + +LN+ + Sbjct: 207 RLQGCIDDESGPLCLTLVSIEETSVDEDFATSQYPGDELDEPVVDVFGHEPFDELNMALT 266 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 R TL ++ L G V+ A L + I +L V ++++ Sbjct: 267 VRCGTLNLTLGELRNLAPGAVLGIAGYAPGMAGLYYGDRPIGQGQLVEVDGRLGLQLSRV 326 Query: 304 I 304 I Sbjct: 327 I 327 >gi|99082785|ref|YP_614939.1| surface presentation of antigens (SPOA) protein [Ruegeria sp. TM1040] gi|99039065|gb|ABF65677.1| Flagellar motor switch protein fliN [Ruegeria sp. TM1040] Length = 98 Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 4/70 (5%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293 + V + + + ++D+V L ++ + + L + + +L G Sbjct: 21 VPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVARGQLEEMEGDQA 80 Query: 294 KNYTIRITDR 303 +R+T+ Sbjct: 81 GQLAVRLTEI 90 >gi|167898810|ref|ZP_02486211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 7894] Length = 264 Score = 52.3 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 186 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 244 Query: 295 NYTIRIT 301 + + Sbjct: 245 QLAVEVK 251 >gi|53716432|ref|YP_106204.1| type III secretion inner membrane protein SctQ [Burkholderia mallei ATCC 23344] gi|124382042|ref|YP_001025752.1| type III secretion inner membrane protein SctQ [Burkholderia mallei NCTC 10229] gi|126447332|ref|YP_001077837.1| type III secretion inner membrane protein SctQ [Burkholderia mallei NCTC 10247] gi|254176060|ref|ZP_04882718.1| type III secretion inner membrane protein SctQ [Burkholderia mallei ATCC 10399] gi|254359171|ref|ZP_04975443.1| type III secretion inner membrane protein SctQ [Burkholderia mallei 2002721280] gi|52422402|gb|AAU45972.1| type III secretion inner membrane protein SctQ [Burkholderia mallei ATCC 23344] gi|126240186|gb|ABO03298.1| type III secretion inner membrane protein SctQ [Burkholderia mallei NCTC 10247] gi|148028358|gb|EDK86318.1| type III secretion inner membrane protein SctQ [Burkholderia mallei 2002721280] gi|160697102|gb|EDP87072.1| type III secretion inner membrane protein SctQ [Burkholderia mallei ATCC 10399] gi|261826615|gb|ABM99775.2| type III secretion inner membrane protein SctQ [Burkholderia mallei NCTC 10229] Length = 645 Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + Q + + P ++ + + I+ ++ ++ L+ G V+ Sbjct: 546 LPAGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 605 Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L A G+ I L VG + +RI D Sbjct: 606 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 642 >gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] Length = 99 Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 39/98 (39%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + L E E R+ + VN+ R+ ++ + D+ L IG V+ Sbjct: 1 MEQIFQVELPEWEPKETTQESREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVL 60 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + + K++ E + +N+ I I++ Sbjct: 61 EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98 >gi|167907138|ref|ZP_02494343.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei NCTC 13177] Length = 260 Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 182 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 240 Query: 295 NYTIRIT 301 + + Sbjct: 241 QLAVEVK 247 >gi|167615480|ref|ZP_02384115.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia thailandensis Bt4] Length = 205 Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291 + + + ++ ++ ++ L+ G V+ + L A G+ I L Sbjct: 127 ADLGDVELPVHVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVA 186 Query: 292 VGKNYTIRITDRINFD 307 VG + +RI D Sbjct: 187 VGAHLGVRIDRMAGDD 202 >gi|85060063|ref|YP_455765.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] gi|45504774|gb|AAS66864.1| SpaO [Sodalis glossinidius] gi|84780583|dbj|BAE75360.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] Length = 338 Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 28/68 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + ++ + + +L ++ + G+V+ + + ANG + EL ++ Sbjct: 262 LANLPLTLEFILQRRYLSLGEIQQFRQGKVLELDPEGEKHIEIRANGHLLALGELVQLED 321 Query: 295 NYTIRITD 302 + + + Sbjct: 322 RLGVELME 329 >gi|167567223|ref|ZP_02360139.1| RhcQ protein [Burkholderia oklahomensis EO147] Length = 104 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ + +TTL ++ ++ G V+ + A+G I E +G Sbjct: 32 LDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVMIGYGEFVEIGS 91 Query: 295 NYTIRITDR 303 + + Sbjct: 92 RVAVELIRM 100 >gi|149189862|ref|ZP_01868142.1| putative flagellar motor switch protein [Vibrio shilonii AK1] gi|148836348|gb|EDL53305.1| putative flagellar motor switch protein [Vibrio shilonii AK1] Length = 270 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 22/283 (7%), Positives = 74/283 (26%), Gaps = 38/283 (13%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 I L + L + + V + + + + + S S Sbjct: 25 IRNKLEELLINSCQQLSLELQAWLKTQQVLVELDHV---SLTELPQTNVDVTSVSVLKHS 81 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 ++ +++ L + T + L+ + +L +R Sbjct: 82 D-DGMLYVSMEPTMLMRLSDQFY----STSMERSGGELTNSDLRLLQRIAKCA------- 129 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 S + +++ + + + + + + Sbjct: 130 -SQWIAPETTWKQHEFEVIPG---------IGIAAKLSIYVRSQQALLAVTLDSALIQTL 179 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + N F ++ V ++ +++ L V+ LK ++P Sbjct: 180 IDELELTPNPHMASD------FNHALHKTPVRLNVQLSKTVLPLTQVLKLKADDILPIEL 233 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + + +++ + + +N D+++ + Sbjct: 234 LNNAPVNI--GKETLFTGRVAEQEGQLVL----ILNDDKETNR 270 >gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes Clip81459] gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J1-208] gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes L99] gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208] gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378] gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023] gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 100 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 39/99 (39%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + + L E E R+ + VN+ R+ K+ + D+ L IG V Sbjct: 1 MMEQVFQVELPEWEPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDV 60 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + + + K++ E + +N+ I I++ Sbjct: 61 LEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 99 >gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067] gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171] Length = 99 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 39/98 (39%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + L E E R+ + VN+ R+ ++ + D+ L IG V+ Sbjct: 1 MEQIFQVELPEWEPKETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVL 60 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + + K++ E + +N+ I I++ Sbjct: 61 EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98 >gi|218663134|ref|ZP_03519064.1| flagellar C-ring protein [Rhizobium etli IE4771] Length = 47 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + +SAN KE+Y CE GR G+NY +R+ D +N D + +++ ++ Sbjct: 3 EVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELIRHLMN 47 >gi|225871935|ref|YP_002753389.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196] gi|225793506|gb|ACO33596.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196] Length = 116 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++E S L + Q + ++ R+ ++ +KDV+ L+ G + Sbjct: 31 EAETASLSLRRTIEERVTQAPLRLEIRLPIRGLRVKDVLALRKGAIFETQWPADEDIPGD 90 Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302 G+++ E + K +R+T Sbjct: 91 CGGQQLVWAEFEVIDKKLAVRVTR 114 >gi|239815264|ref|YP_002944174.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] gi|239801841|gb|ACS18908.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] Length = 322 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 3/110 (2%) Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDPFARKTYQLNVNIDTRINLKKT 251 + L +P + ++ + L +P + V + + + Sbjct: 189 GGVWRLGLPHGAVAAVLASESAAAKPPLRSGDHLLPKEPLDQALADRRVALRVMLKGAEL 248 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRI 300 L + L++ V+P H A + A+G + LG+ I + Sbjct: 249 NLGQLQELRVDDVVPLEHLLDAPAHVVGADGGRVCDGWLGQSDGRMAIEL 298 >gi|294665991|ref|ZP_06731254.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604239|gb|EFF47627.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 304 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + Q+ + A +L + + ++ +L + L+ GQ++ Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259 Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 L G+ I L VG++ ++I Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296 >gi|213023716|ref|ZP_03338163.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 140 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 64 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 123 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 124 NEFMVRITR 132 >gi|5679187|gb|AAD46901.1|AF160974_4 HrcQ homolog [Xanthomonas campestris pv. glycines] gi|30524903|gb|AAP34348.1|AF499777_16 HrcQ [Xanthomonas axonopodis pv. glycines] Length = 304 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + Q+ + A +L + + ++ +L + L+ GQ++ Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259 Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 L G+ I L VG++ ++I Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296 >gi|238757864|ref|ZP_04619046.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC 35236] gi|238703849|gb|EEP96384.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC 35236] Length = 269 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 E D P A L + + +L + L++G ++P + L Sbjct: 169 EERDDVDNPPPLAVSIDDLPQILLVEVGQVDISLGALRALRVGDLLPVAAQFGGEVKLRL 228 Query: 280 NGKEIYSCELGRVGKNYTIRITD 302 NG+ + + EL G ++ +RI Sbjct: 229 NGRVLGAGELVGCGDSFLVRINR 251 >gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] Length = 100 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 39/99 (39%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + + L E E R+ + VN+ R+ K+ + D+ L IG V Sbjct: 1 MMEQVFQVELPEWEPKETPQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDV 60 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + + + K++ E + +N+ I I++ Sbjct: 61 LEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 99 >gi|167724362|ref|ZP_02407598.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei DM98] Length = 216 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + Q + + P ++ + + I+ ++ ++ L+ G V+ Sbjct: 117 LQAGLQADASPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 176 Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L A G+ I L VG + +RI D Sbjct: 177 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 213 >gi|294625839|ref|ZP_06704455.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599867|gb|EFF43988.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 304 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + Q+ + A +L + + ++ +L + L+ GQ++ Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259 Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 L G+ I L VG++ ++I Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296 >gi|227820524|ref|YP_002824495.1| type III secretion system translocation protein, RhcQ [Sinorhizobium fredii NGR234] gi|227339523|gb|ACP23742.1| type III secretion system translocation protein, RhcQ [Sinorhizobium fredii NGR234] Length = 351 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 1/92 (1%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 L S + Q L + + I + LK++ + G V+ Sbjct: 256 LKSSWEFSAMSKQQPPSSGEL-EPLADLPIELVFEIGRAEFPLKEIARMGEGTVLHASPS 314 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + ANG+ + EL R+G+ IR+ Sbjct: 315 LSSPVSILANGRLVGKGELIRIGEGLGIRVVR 346 >gi|46562140|ref|YP_009161.1| type III secretion system protein YopQ family [Desulfovibrio vulgaris str. Hildenborough] gi|46447677|gb|AAS94343.1| type III secretion system protein, YopQ family [Desulfovibrio vulgaris str. Hildenborough] gi|311235511|gb|ADP88364.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris RCH1] Length = 484 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/278 (8%), Positives = 58/278 (20%), Gaps = 25/278 (8%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 + V + + S + S T Sbjct: 146 TALATLLGTTVRAEAMETPPAASTDAAPGVASGTSAGHDAPPPGSCAVVLALSVPTGDTK 205 Query: 108 LENLLGASHETIPQLYNRS--------LSTVEKKLAKRTIAQISAVLNQCISTTQE-SSP 158 G + + + V +L ++ L + E +P Sbjct: 206 GGTAAGGTTPAPDTGGDGDNRDSGSAGHTVVPLRLTLPV--ALATSLAAQLMALPERHTP 263 Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN----VASSFVLII-PQETL------- 206 + + ++E T ++ + + L+ P Sbjct: 264 REDIPVTVTIEAGRMRLAAHELATLAVDDVLLPEDYPALRGRIALMTGPHAFACSLTEGR 323 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQL--NVNIDTRINLKKTTLKDVVTLKIGQV 264 + + S+ V+I + + L D+ L G Sbjct: 324 ATVLDATPAPNTPESPMSDQQTPEVPAGLDTAALEVDIVFELERRTMKLNDLAALAPGYT 383 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L G+ I L + +++ Sbjct: 384 FALGTDPLAPVTLRVQGRNIGRGRLVDLDGTPGVQVLH 421 >gi|307944365|ref|ZP_07659706.1| putative surface presentation of antigens (spoa) protein [Roseibium sp. TrichSKD4] gi|307772711|gb|EFO31931.1| putative surface presentation of antigens (spoa) protein [Roseibium sp. TrichSKD4] Length = 348 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 A K ++ VN+ + + ++ L+ G V+ + L NG++I L Sbjct: 272 AGKVDEIKVNLVVSAGELQLPIGELRELETGSVLRLPVGQPGNVNLMVNGQKIGEGVLVT 331 Query: 292 VGKNYTIRITD 302 + + I+ Sbjct: 332 ISGQTAVEISK 342 >gi|171316783|ref|ZP_02905994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MEX-5] gi|171098041|gb|EDT42857.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MEX-5] Length = 377 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRV 292 L V ++ I+ + + ++ G VI L+A+ + I EL V Sbjct: 299 AIGALEVPVNFEIDTVALPIDQLAAMRQGYVIELSRTTSDMQVRLTAHSQVIGHGELVSV 358 Query: 293 GKNYTIRITDRINFDQ 308 G + +RI D Sbjct: 359 GDHLGVRILQMAQRDD 374 >gi|2196899|gb|AAB61257.1| FliY [Treponema pallidum] Length = 113 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 9/89 (10%), Positives = 20/89 (22%), Gaps = 2/89 (2%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 P A +G G ++ S + V IS + Sbjct: 26 PAAGASFSGG-GLSSAQSELLQSFCQANVGSFCPSLESLTGKTVSISPPRVEISSKEEFS 84 Query: 75 HSFKENFVFSQASLS-SWSSNFFIGCSNN 102 + V + ++ + + Sbjct: 85 RVIPDMLVATVIDFEGEFAGDHLFLMAPE 113 >gi|83717892|ref|YP_438371.1| hypothetical protein BTH_II0169 [Burkholderia thailandensis E264] gi|83651717|gb|ABC35781.1| conserved hypothetical protein [Burkholderia thailandensis E264] Length = 319 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 16/182 (8%), Positives = 51/182 (28%), Gaps = 12/182 (6%) Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 T +T E++LA+R +++ + + + + + Sbjct: 143 ATAAHAPPIPETTTERRLAERLAGELARTVARA------IPFDAPPDDETPPPPDGGHAR 196 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 + + + SS +++ + Sbjct: 197 RAHLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSV--RRERSLPST-- 252 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +L + + ++ DV+ L+ G V+P A + + ++++ + Sbjct: 253 RLRLKLTAQLMEMSVPFGDVLRLRPGTVLPVRLHA--PARVMTHDAQLFTASIAEHNGKL 310 Query: 297 TI 298 + Sbjct: 311 CL 312 >gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J2-064] Length = 99 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 40/98 (40%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + L E+ E R+ + VN+ R+ K+ + D+ L IG V+ Sbjct: 1 MEQVFQVELPEWEPKESSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVL 60 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + + K++ E + +N+ I I++ Sbjct: 61 EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98 >gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 99 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 40/98 (40%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + L +E E R+ + VN+ R+ ++ + D+ L IG V+ Sbjct: 1 MEQIFQVELPEWEPNETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVL 60 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + + K++ E + +N+ I I++ Sbjct: 61 EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98 >gi|83716524|ref|YP_438950.1| surface presentation of antigens domain-containing protein [Burkholderia thailandensis E264] gi|257142054|ref|ZP_05590316.1| surface presentation of antigens domain-containing protein [Burkholderia thailandensis E264] gi|83650349|gb|ABC34413.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia thailandensis E264] Length = 423 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291 + + + ++ ++ ++ L+ G V+ + L A G+ I L Sbjct: 345 ADLGDVELPVHVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVA 404 Query: 292 VGKNYTIRITDRINFD 307 VG + +RI D Sbjct: 405 VGAHLGVRIDRMAGDD 420 >gi|82470759|gb|ABB77411.1| HrcQ [Pantoea stewartii subsp. stewartii] Length = 336 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 5/112 (4%) Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE-DLIDPFARK----TYQLNVNI 242 + I L +P ++ + + ++E + A L +++ Sbjct: 209 VNIAGYELVGTLQLPHHFVITHLERTALNPYETEGSDAVSKREHLASDDHFSLAMLPLSL 268 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + R + TL ++ L+ G V+ + A L I EL V Sbjct: 269 EVRCGRTRLTLGELQHLQPGSVLTLDNMTPGEADLYYGETLIAQGELVDVEG 320 >gi|1648935|gb|AAB17683.1| putative [Sinorhizobium fredii] gi|19749327|gb|AAL98697.1| Y4yK [Sinorhizobium fredii] gi|52631920|gb|AAU85370.1| RhcQ [Sinorhizobium fredii] Length = 382 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 34/101 (33%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 S + ++E + P + + + +L D+ + G V Sbjct: 282 PFRPQSRPLEYAHMTETESQLRPSDADLDDIEIVLVFECGRWPISLGDLRSAGDGHVFEL 341 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + ANG+ I ++ R+G IR+ R+ + Sbjct: 342 GRPIDGLVDIVANGRCIGRGDIVRIGDELGIRLRGRLACND 382 >gi|124381914|ref|YP_001025863.1| type III secretion system protein BsaV [Burkholderia mallei NCTC 10229] gi|126447935|ref|YP_001077948.1| type III secretion system protein BsaV [Burkholderia mallei NCTC 10247] gi|254359076|ref|ZP_04975348.1| type III secretion system protein BsaV [Burkholderia mallei 2002721280] gi|126240789|gb|ABO03901.1| type III secretion system protein BsaV [Burkholderia mallei NCTC 10247] gi|148028263|gb|EDK86223.1| type III secretion system protein BsaV [Burkholderia mallei 2002721280] gi|261826559|gb|ABN00415.2| type III secretion system protein BsaV [Burkholderia mallei NCTC 10229] Length = 335 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T++ + +G V+P + ANG+ EL +VG+ Sbjct: 257 IDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 315 Query: 295 NYTIRIT 301 + + Sbjct: 316 QLAVEVK 322 >gi|254469380|ref|ZP_05082785.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062] gi|211961215|gb|EEA96410.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062] Length = 350 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE---KTCAILSANGKEIYSCELGR 291 Q++V + ++ ++ ++ ++ + G ++ +T + A GK I L + Sbjct: 273 LSQMSVPVRFEVDEREISIAELESWAAGTLVNIDVPALNEETPVYVRAAGKRIAKGHLVQ 332 Query: 292 VGKNYTIRITDR 303 + + +RI+ Sbjct: 333 IDERVALRISKT 344 >gi|167577332|ref|ZP_02370206.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia thailandensis TXDOH] Length = 226 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291 + + + ++ ++ ++ L+ G V+ + L A G+ I L Sbjct: 148 ADLGDVELPVHVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVA 207 Query: 292 VGKNYTIRITDRINFD 307 VG + +RI D Sbjct: 208 VGAHLGVRIDRMAGDD 223 >gi|167004217|ref|ZP_02269984.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20] gi|243060412|gb|EES42598.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20] Length = 331 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T++ + +G V+P + ANG+ EL +VG+ Sbjct: 253 IDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 311 Query: 295 NYTIRIT 301 + + Sbjct: 312 QLAVEVK 318 >gi|21241176|ref|NP_640758.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106483|gb|AAM35294.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306] Length = 304 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + Q+ + A +L + + ++ +L + L+ GQ++ Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259 Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 L G+ I L VG++ ++I Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296 >gi|53716455|ref|YP_106127.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 23344] gi|67641438|ref|ZP_00440217.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia mallei GB8 horse 4] gi|254176163|ref|ZP_04882821.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 10399] gi|254200993|ref|ZP_04907358.1| type III secretion system protein BsaV [Burkholderia mallei FMH] gi|254204957|ref|ZP_04911310.1| type III secretion system protein BsaV [Burkholderia mallei JHU] gi|52422425|gb|AAU45995.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 23344] gi|147748605|gb|EDK55680.1| type III secretion system protein BsaV [Burkholderia mallei FMH] gi|147754543|gb|EDK61607.1| type III secretion system protein BsaV [Burkholderia mallei JHU] gi|160697205|gb|EDP87175.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 10399] gi|238522378|gb|EEP85823.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia mallei GB8 horse 4] Length = 327 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T++ + +G V+P + ANG+ EL +VG+ Sbjct: 249 IDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 307 Query: 295 NYTIRIT 301 + + Sbjct: 308 QLAVEVK 314 >gi|238563925|ref|ZP_04610802.1| type III secretion inner membrane protein SctQ [Burkholderia mallei GB8 horse 4] gi|238519669|gb|EEP83138.1| type III secretion inner membrane protein SctQ [Burkholderia mallei GB8 horse 4] Length = 160 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + Q + + P ++ + + I+ ++ ++ L+ G V+ Sbjct: 61 LPAGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 120 Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L A G+ I L VG + +RI D Sbjct: 121 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 157 >gi|167614817|ref|ZP_02383452.1| hypothetical protein BthaB_00940 [Burkholderia thailandensis Bt4] gi|257141402|ref|ZP_05589664.1| hypothetical protein BthaA_19664 [Burkholderia thailandensis E264] Length = 298 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 16/182 (8%), Positives = 51/182 (28%), Gaps = 12/182 (6%) Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 T +T E++LA+R +++ + + + + + Sbjct: 122 ATAAHAPPIPETTTERRLAERLAGELARTVARA------IPFDAPPDDETPPPPDGGHAR 175 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 + + + SS +++ + Sbjct: 176 RAHLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSV--RRERSLPST-- 231 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +L + + ++ DV+ L+ G V+P A + + ++++ + Sbjct: 232 RLRLKLTAQLMEMSVPFGDVLRLRPGTVLPVRLHA--PARVMTHDAQLFTASIAEHNGKL 289 Query: 297 TI 298 + Sbjct: 290 CL 291 >gi|254185166|ref|ZP_04891755.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1655] gi|184215758|gb|EDU12739.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1655] Length = 335 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+ Sbjct: 257 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGCGELIQVGE 315 Query: 295 NYTIRIT 301 + + Sbjct: 316 QLAVEVK 322 >gi|16799781|ref|NP_470049.1| flagellar motor switch protein [Listeria innocua Clip11262] gi|16413158|emb|CAC95938.1| lin0706 [Listeria innocua Clip11262] Length = 78 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + + ID + K + ++ +K G V ++ +GK I E+ Sbjct: 5 HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTGNVVKITISGKCIGYGEILTKDGK 64 Query: 296 YTIRITD 302 ++IT Sbjct: 65 MFVKITK 71 >gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262] gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J1-175] gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262] gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes] gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816] Length = 99 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 39/98 (39%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + L E E R+ + VN+ R+ K+ + D+ L IG V+ Sbjct: 1 MEQVFQVELPEWEPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVL 60 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + + K++ E + +N+ I I++ Sbjct: 61 EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98 >gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland 1988] gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561] gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S] gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161] gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003] gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e] gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes] gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] Length = 99 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ K+ + D+ L IG V+ + + + K++ E + Sbjct: 28 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87 Query: 293 GKNYTIRITDR 303 +N+ I I++ Sbjct: 88 DENFGIVISEI 98 >gi|218887526|ref|YP_002436847.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758480|gb|ACL09379.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 409 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 23/69 (33%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V + + + T+ D+ L G L+ G+ + + L +G Sbjct: 332 VNALGVTVVFELERRPMTVGDLAALAPGYTFALGADPLGPVTLTVGGRAVGTGRLVDLGG 391 Query: 295 NYTIRITDR 303 +++ Sbjct: 392 TLGVQVLRM 400 >gi|260899856|ref|ZP_05908251.1| conserved domain protein [Vibrio parahaemolyticus AQ4037] gi|221271468|dbj|BAH15020.1| putative type III secretion system apparatus protein VscQ2 [Vibrio parahaemolyticus] gi|308107308|gb|EFO44848.1| conserved domain protein [Vibrio parahaemolyticus AQ4037] gi|328469630|gb|EGF40566.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus 10329] Length = 71 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + ID I TL++++ L+ G +I ++ +L + + I + L ++ Y Sbjct: 1 MKIAIDVVIAHCSMTLEELLHLQKGNMIKIDDFVQSEVMLKSGNELIATGTLIKIDDQYG 60 Query: 298 IRITDR 303 + I + Sbjct: 61 VSIDNV 66 >gi|126442961|ref|YP_001063273.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] gi|126222452|gb|ABN85957.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] Length = 424 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 1/97 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + P ++ + + I+ ++ ++ L+ G V+ Sbjct: 325 SLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 384 Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L A G+ I L VG + +RI D Sbjct: 385 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 421 >gi|187919911|ref|YP_001888942.1| surface presentation of antigens (SPOA) protein [Burkholderia phytofirmans PsJN] gi|187718349|gb|ACD19572.1| surface presentation of antigens (SPOA) protein [Burkholderia phytofirmans PsJN] Length = 327 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 4/83 (4%) Query: 224 SEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILSA 279 + + L + D I TL +++ L+ G + L Sbjct: 234 DANQSAEMTSELIPASALTFSFDAVIGTLSLTLDELMRLRTGSTVSLQQPVGRHAIRLLC 293 Query: 280 NGKEIYSCELGRVGKNYTIRITD 302 G EL + +RI D Sbjct: 294 QGIPFARGELIDIDDALGVRIVD 316 >gi|254193852|ref|ZP_04900284.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei S13] gi|169650603|gb|EDS83296.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei S13] Length = 428 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 349 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 408 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 409 VGEHLGVRIIRM 420 >gi|167566299|ref|ZP_02359215.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia oklahomensis EO147] Length = 144 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 + + + I+ ++ ++ L+ G V+ + L A G+ I EL VG Sbjct: 68 LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 127 Query: 294 KNYTIRITDRINFD 307 + +RI D Sbjct: 128 AHLGVRINRMAGDD 141 >gi|254186718|ref|ZP_04893234.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pasteur 52237] gi|157934402|gb|EDO90072.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pasteur 52237] Length = 428 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 349 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 408 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 409 VGEHLGVRIIRM 420 >gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 99 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ K+ + D+ L IG V+ + + + K++ E + Sbjct: 28 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87 Query: 293 GKNYTIRITDR 303 +N+ I I++ Sbjct: 88 DENFGIVISEI 98 >gi|299066543|emb|CBJ37733.1| protein of unknown function [Ralstonia solanacearum CMR15] Length = 321 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQV 264 LI +E + +++ +N + L + L++G V Sbjct: 218 MRLIGPCVATTDGAATERRSEALLTPVLSALSAEPLSMTVELNPVELGLGTLTGLQVGDV 277 Query: 265 IPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRI 300 I H + ++ A +G + LGR+ I + Sbjct: 278 IRIPHALEMPLLVRADDGALLCQAFLGRLDGQKAIEL 314 >gi|238752881|ref|ZP_04614346.1| Flagellar motor switch protein [Yersinia rohdei ATCC 43380] gi|238708920|gb|EEQ01173.1| Flagellar motor switch protein [Yersinia rohdei ATCC 43380] Length = 292 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 72/207 (34%), Gaps = 17/207 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 N L++ LL + G + E I + N ++ E++L + I+ ++ Sbjct: 85 GNVAFDIDRTLLLNLLNDYYGLTKEKNIISDVENLPITQTEERLKNKLSLDITDLILN-- 142 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 P + DI + ++ + +F L+I + + Sbjct: 143 ------QPEFGELLDIKNNNSPPIA---NWSYRMDFWLK-GYEKCAFTLLIDLPHVDRFL 192 Query: 211 LISLSSQNKSENQSEDLI-DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + +++ F + +L + + ++++ + T D++ LK G +IP Sbjct: 193 SKLNNEHQSEKKKNQTFSIKQFDQLVKKLPIRLTSKLSCSELTFSDLMKLKEGDIIPATL 252 Query: 270 REKTCAILSANGKEIYSCELGRVGKNY 296 E + + ++S + Sbjct: 253 PEHFP--VFIGKESLFSAVVSESRGKL 277 >gi|134282037|ref|ZP_01768743.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] gi|134246566|gb|EBA46654.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] Length = 424 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 1/97 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + P ++ + + I+ ++ ++ L+ G V+ Sbjct: 325 SLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 384 Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L A G+ I L VG + +RI D Sbjct: 385 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 421 >gi|167573401|ref|ZP_02366275.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia oklahomensis C6786] Length = 139 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 + + + I+ ++ ++ L+ G V+ + L A G+ I EL VG Sbjct: 63 LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 122 Query: 294 KNYTIRITDRINFD 307 + +RI D Sbjct: 123 AHLGVRINRMAGDD 136 >gi|237510474|ref|ZP_04523189.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] gi|235002679|gb|EEP52103.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] Length = 424 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 1/97 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + P ++ + + I+ ++ ++ L+ G V+ Sbjct: 325 SLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 384 Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L A G+ I L VG + +RI D Sbjct: 385 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 421 >gi|76819487|ref|YP_335588.1| SctQ [Burkholderia pseudomallei 1710b] gi|76583960|gb|ABA53434.1| SctQ [Burkholderia pseudomallei 1710b] Length = 435 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 356 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 415 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 416 VGEHLGVRIIRM 427 >gi|167898939|ref|ZP_02486340.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei 7894] Length = 174 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + Q + + P ++ + + I+ ++ ++ L+ G V+ Sbjct: 75 LPAGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 134 Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L A G+ I L VG + +RI D Sbjct: 135 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 171 >gi|116872087|ref|YP_848868.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|315281359|ref|ZP_07869999.1| conserved domain protein [Listeria marthii FSL S4-120] gi|116740965|emb|CAK20085.1| flagellar motor switch protein, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|313614998|gb|EFR88502.1| conserved domain protein [Listeria marthii FSL S4-120] Length = 78 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + + ID + K + ++ +K G V ++ +GK I E+ Sbjct: 5 HNIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64 Query: 296 YTIRITD 302 ++IT Sbjct: 65 MFVKITK 71 >gi|329902178|ref|ZP_08273067.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480] gi|327548849|gb|EGF33478.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480] Length = 317 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 8/138 (5%) Query: 173 TNRLSNE--FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID- 229 L + F + + I + S V P L + + S + ++ Sbjct: 178 DIVLPDTCWFDCSGTGRIRIGSWQLSVVYTAPAGMTLLSLETRMDSLGTIVDTDSLVVSP 237 Query: 230 -----PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 A L + + + TTL + TL G V+P ++A G+ + Sbjct: 238 SLAGTHDAGGLDTLPLQLHFDMGCCHTTLGGLRTLVAGSVLPIEGGSPAAIGITAGGRTL 297 Query: 285 YSCELGRVGKNYTIRITD 302 EL V IRI Sbjct: 298 GQGELVEVNGKLAIRIIH 315 >gi|161503488|ref|YP_001570600.1| type III secretion system protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864835|gb|ABX21458.1| hypothetical protein SARI_01564 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 322 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL ++ I + + LK G V+P + NG+ I EL G Sbjct: 246 ELEQLPQSVLFEIGRASVEIGQLRQLKAGDVLPVGGCFAPEVTIRLNGRVIGQGELIACG 305 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 306 NEFMVRITR 314 >gi|317486825|ref|ZP_07945641.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila wadsworthia 3_1_6] gi|316921988|gb|EFV43258.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila wadsworthia 3_1_6] Length = 388 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 33/99 (33%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 T+L + N + T +L V + + + T++DV TL G Sbjct: 284 ATILSVLNPEEGPMSDENNTAAGAAPSEGVDTGELEVTLTFELERRLMTVRDVETLAPGY 343 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 F L ANGK + L + +++ Sbjct: 344 TFAFGGDALAPVTLYANGKSVGKGRLVDLNGTLGVQVVS 382 Score = 36.9 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 11/106 (10%), Positives = 33/106 (31%), Gaps = 3/106 (2%) Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L + ++ + +++ + AS+ IP L +L + Sbjct: 148 LHVPLAVRNVRMIEAAEPAVCALPLTLHVPVGAGASAEAYPIPVRLCLPDRESALELVER 207 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + A + V + + ++ ++ +L+ V+ Sbjct: 208 LDALPRRRALGLA---GDVPVPVSLEAGRMRLSVNELSSLEPDDVL 250 >gi|194292013|ref|YP_002007920.1| sctq: non flagellar t3S system conserved protein. flin/mopa/spao family. [Cupriavidus taiwanensis LMG 19424] gi|193225917|emb|CAQ71864.1| SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO family [Cupriavidus taiwanensis LMG 19424] Length = 399 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRV 292 + QL V + + L ++ + G V +++ + ANG I + L V Sbjct: 324 RLDQLEVTLRFEVGDVAVPLAELRAVAPGYVFELPQPLKQSEVRIVANGNRIGTGTLIAV 383 Query: 293 GKNYTIRIT 301 G +RIT Sbjct: 384 GNRLGVRIT 392 >gi|317407760|gb|EFV87687.1| YscQ/HrcQ family type III secretion apparatus protein [Achromobacter xylosoxidans C54] Length = 396 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKN 295 Q+ V + + + TL + TL +G+V C + ANG E+ EL V N Sbjct: 324 QVPVRLGFDLGERLITLDRLRTLALGEVFELDRPVADGCVRIRANGMEVGLGELVEVEGN 383 Query: 296 YTIRITD 302 +R+ Sbjct: 384 IGVRLKS 390 >gi|167467560|ref|ZP_02332264.1| type III secretion system protein [Yersinia pestis FV-1] Length = 270 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + L + I L ++ L +GQ + + NG+ + L R Sbjct: 191 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 250 Query: 294 KNYTIRI 300 + +RI Sbjct: 251 EKLVVRI 257 >gi|162419017|ref|YP_001608229.1| type III secretion system protein [Yersinia pestis Angola] gi|162351832|gb|ABX85780.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis Angola] Length = 294 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + L + I L ++ L +GQ + + NG+ + L R Sbjct: 215 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 274 Query: 294 KNYTIRI 300 + +RI Sbjct: 275 EKLVVRI 281 >gi|51594681|ref|YP_068872.1| type III secretion system protein [Yersinia pseudotuberculosis IP 32953] gi|51587963|emb|CAH19566.1| type III secretion system apparatus protein, SsaQ [Yersinia pseudotuberculosis IP 32953] Length = 306 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + L + I L ++ L +GQ + + NG+ + L R Sbjct: 227 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 286 Query: 294 KNYTIRI 300 + +RI Sbjct: 287 EKLVVRI 293 >gi|150260682|ref|ZP_01917410.1| type III secretion system apparatus protein [Yersinia pestis CA88-4125] gi|218927476|ref|YP_002345351.1| type III secretion system protein [Yersinia pestis CO92] gi|115346087|emb|CAL18955.1| type III secretion system apparatus protein [Yersinia pestis CO92] gi|149290090|gb|EDM40167.1| type III secretion system apparatus protein [Yersinia pestis CA88-4125] Length = 306 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + L + I L ++ L +GQ + + NG+ + L R Sbjct: 227 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 286 Query: 294 KNYTIRI 300 + +RI Sbjct: 287 EKLVVRI 293 >gi|167820507|ref|ZP_02452187.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei 91] Length = 199 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 107 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 166 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 167 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 196 >gi|22124443|ref|NP_667866.1| type III secretion system protein [Yersinia pestis KIM 10] gi|45440279|ref|NP_991818.1| type III secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|108810003|ref|YP_653919.1| type III secretion system protein [Yersinia pestis Antiqua] gi|108813558|ref|YP_649325.1| type III secretion system protein [Yersinia pestis Nepal516] gi|145600948|ref|YP_001165024.1| type III secretion system protein [Yersinia pestis Pestoides F] gi|165926685|ref|ZP_02222517.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936446|ref|ZP_02225014.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. IP275] gi|166010408|ref|ZP_02231306.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213947|ref|ZP_02239982.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402221|ref|ZP_02307694.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418911|ref|ZP_02310664.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426186|ref|ZP_02317939.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229836524|ref|ZP_04456690.1| type III secretion system apparatus protein [Yersinia pestis Pestoides A] gi|229840132|ref|ZP_04460291.1| type III secretion system apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842213|ref|ZP_04462368.1| type III secretion system apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904048|ref|ZP_04519161.1| type III secretion system apparatus protein [Yersinia pestis Nepal516] gi|270488966|ref|ZP_06206040.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis KIM D27] gi|294502342|ref|YP_003566404.1| type III secretion protein [Yersinia pestis Z176003] gi|21957230|gb|AAM84117.1|AE013654_6 putative type III secretion system component [Yersinia pestis KIM 10] gi|45435135|gb|AAS60695.1| type III secretion system apparatus protein [Yersinia pestis biovar Microtus str. 91001] gi|108777206|gb|ABG19725.1| type III secretion system apparatus protein [Yersinia pestis Nepal516] gi|108781916|gb|ABG15974.1| type III secretion system apparatus protein [Yersinia pestis Antiqua] gi|145212644|gb|ABP42051.1| type III secretion system apparatus protein [Yersinia pestis Pestoides F] gi|165915562|gb|EDR34171.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. IP275] gi|165921308|gb|EDR38532.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990498|gb|EDR42799.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204922|gb|EDR49402.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. B42003004] gi|166962905|gb|EDR58926.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048402|gb|EDR59810.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054897|gb|EDR64699.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679818|gb|EEO75921.1| type III secretion system apparatus protein [Yersinia pestis Nepal516] gi|229690523|gb|EEO82577.1| type III secretion system apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696498|gb|EEO86545.1| type III secretion system apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706208|gb|EEO92216.1| type III secretion system apparatus protein [Yersinia pestis Pestoides A] gi|262360422|gb|ACY57143.1| type III secretion protein [Yersinia pestis D106004] gi|262364372|gb|ACY60929.1| type III secretion protein [Yersinia pestis D182038] gi|270337470|gb|EFA48247.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis KIM D27] gi|294352801|gb|ADE63142.1| type III secretion protein [Yersinia pestis Z176003] gi|320013866|gb|ADV97437.1| type III secretion system apparatus protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 320 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + L + I L ++ L +GQ + + NG+ + L R Sbjct: 241 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 300 Query: 294 KNYTIRI 300 + +RI Sbjct: 301 EKLVVRI 307 >gi|161502065|ref|YP_001569177.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|973277|gb|AAC43944.1| SpaO [Salmonella enterica] gi|973281|gb|AAC43947.1| SpaO [Salmonella enterica] gi|160863412|gb|ABX20035.1| hypothetical protein SARI_00082 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 303 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 37/90 (41%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E ++E QL V ++ + K+ TL D+ + Q++ + Sbjct: 209 QHIEEEKNETETAEILPGLSQLPVKLEFVLYRKQVTLADLEAIGQQQLLSLPTNAECNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHKWLSE 298 >gi|186893684|ref|YP_001870796.1| type III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|186696710|gb|ACC87339.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia pseudotuberculosis PB1/+] Length = 320 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + L + I L ++ L +GQ + + NG+ + L R Sbjct: 241 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 300 Query: 294 KNYTIRI 300 + +RI Sbjct: 301 EKLVVRI 307 >gi|4206077|gb|AAD11410.1| SctQ [Burkholderia pseudomallei] Length = 310 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 231 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 290 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 291 VGEHLGVRIIRM 302 >gi|167724021|ref|ZP_02407257.1| SctQ [Burkholderia pseudomallei DM98] Length = 359 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 340 VGEHLGVRIIRM 351 >gi|167915304|ref|ZP_02502395.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 112] Length = 347 Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 268 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 327 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 328 VGEHLGVRIIRM 339 >gi|238023707|ref|YP_002907939.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia glumae BGR1] gi|237878372|gb|ACR30704.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia glumae BGR1] Length = 445 Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVG 293 ++ + + I+ L + +L G V+ L +G+ + EL VG Sbjct: 368 VGKVELPVQFEIDTVALPLDQLSSLGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVG 427 Query: 294 KNYTIRITDR 303 ++ +RI Sbjct: 428 EHLGVRIIRM 437 >gi|293416352|ref|ZP_06658991.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B185] gi|291431708|gb|EFF04691.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B185] Length = 299 Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 36/80 (45%) Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ++ + QL V++D + K+ TL + L G+V+ + + ANG I Sbjct: 213 QETEQHVVQDLGQLPVSLDFVLFRKQVTLTGLQELYQGKVLALPAEAEKRTEIRANGALI 272 Query: 285 YSCELGRVGKNYTIRITDRI 304 EL ++ + + IT+ + Sbjct: 273 GYGELVQLDNSLGVEITEWV 292 >gi|134282546|ref|ZP_01769250.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] gi|134246103|gb|EBA46193.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] Length = 337 Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 258 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 317 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 318 VGEHLGVRIIRM 329 >gi|254301601|ref|ZP_04969045.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] gi|157811292|gb|EDO88462.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] Length = 359 Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 340 VGEHLGVRIIRM 351 >gi|48479064|gb|AAT44855.1| putative type III secretory pathway and flagellar biosynthesis protein [Burkholderia pseudomallei] Length = 310 Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 231 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 290 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 291 VGEHLGVRIIRM 302 >gi|167923137|ref|ZP_02510228.1| SctQ [Burkholderia pseudomallei BCC215] gi|217425374|ref|ZP_03456868.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 576] gi|217391625|gb|EEC31653.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 576] Length = 359 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 340 VGEHLGVRIIRM 351 >gi|167742990|ref|ZP_02415764.1| SctQ [Burkholderia pseudomallei 14] gi|167828536|ref|ZP_02460007.1| SctQ [Burkholderia pseudomallei 9] gi|167898603|ref|ZP_02486004.1| SctQ [Burkholderia pseudomallei 7894] gi|226199135|ref|ZP_03794697.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pakistan 9] gi|254264504|ref|ZP_04955369.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] gi|225928910|gb|EEH24935.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pakistan 9] gi|254215506|gb|EET04891.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] Length = 359 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 340 VGEHLGVRIIRM 351 >gi|237509496|ref|ZP_04522211.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] gi|235001701|gb|EEP51125.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] Length = 359 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 340 VGEHLGVRIIRM 351 >gi|254183804|ref|ZP_04890396.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1655] gi|184214337|gb|EDU11380.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1655] Length = 359 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 340 VGEHLGVRIIRM 351 >gi|126457706|ref|YP_001075941.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|167849994|ref|ZP_02475502.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei B7210] gi|242313295|ref|ZP_04812312.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106b] gi|126231474|gb|ABN94887.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|242136534|gb|EES22937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106b] Length = 359 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 340 VGEHLGVRIIRM 351 >gi|126442929|ref|YP_001062994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] gi|126222420|gb|ABN85925.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] Length = 359 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 340 VGEHLGVRIIRM 351 >gi|167820161|ref|ZP_02451841.1| SctQ [Burkholderia pseudomallei 91] Length = 359 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 340 VGEHLGVRIIRM 351 >gi|53722430|ref|YP_111415.1| type III secretion-associated protein [Burkholderia pseudomallei K96243] gi|52212844|emb|CAH38878.1| putative type III secretion-associated protein [Burkholderia pseudomallei K96243] Length = 310 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 231 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 290 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 291 VGEHLGVRIIRM 302 >gi|16802740|ref|NP_464225.1| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi|46906949|ref|YP_013338.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091660|ref|ZP_00229456.1| flagellar motor switch protein, putative [Listeria monocytogenes str. 4b H7858] gi|47095264|ref|ZP_00232875.1| flagellar motor switch protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|217965204|ref|YP_002350882.1| hypothetical protein LMHCC_1927 [Listeria monocytogenes HCC23] gi|224498780|ref|ZP_03667129.1| flagellar motor switch protein [Listeria monocytogenes Finland 1988] gi|224501997|ref|ZP_03670304.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561] gi|226223329|ref|YP_002757436.1| flagellar switch protein [Listeria monocytogenes Clip81459] gi|254824022|ref|ZP_05229023.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|254829355|ref|ZP_05234042.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|254830311|ref|ZP_05234966.1| flagellar motor switch protein [Listeria monocytogenes 10403S] gi|254853098|ref|ZP_05242446.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|254900066|ref|ZP_05259990.1| flagellar motor switch protein [Listeria monocytogenes J0161] gi|254911381|ref|ZP_05261393.1| flagellar motor switch protein [Listeria monocytogenes J2818] gi|254932022|ref|ZP_05265381.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|254935708|ref|ZP_05267405.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|254994392|ref|ZP_05276582.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-064] gi|255027497|ref|ZP_05299483.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003] gi|255030383|ref|ZP_05302334.1| flagellar motor switch protein [Listeria monocytogenes LO28] gi|255521911|ref|ZP_05389148.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175] gi|284801028|ref|YP_003412893.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284994170|ref|YP_003415938.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|290893995|ref|ZP_06556970.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|300764510|ref|ZP_07074503.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017] gi|16410087|emb|CAC98776.1| lmo0698 [Listeria monocytogenes EGD-e] gi|46880215|gb|AAT03515.1| putative flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47016335|gb|EAL07257.1| flagellar motor switch protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|47019979|gb|EAL10716.1| flagellar motor switch protein, putative [Listeria monocytogenes str. 4b H7858] gi|217334474|gb|ACK40268.1| conserved domain protein [Listeria monocytogenes HCC23] gi|225875791|emb|CAS04494.1| Putative flagellar switch protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601768|gb|EEW15093.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|258606447|gb|EEW19055.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|258608291|gb|EEW20899.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|284056590|gb|ADB67531.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284059637|gb|ADB70576.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|290556441|gb|EFD89980.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|293583574|gb|EFF95606.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293589318|gb|EFF97652.1| flagellar motor switch protein [Listeria monocytogenes J2818] gi|293593250|gb|EFG01011.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|300514864|gb|EFK41918.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017] gi|307570237|emb|CAR83416.1| flagellar motor switch protein, putative [Listeria monocytogenes L99] gi|313610116|gb|EFR85439.1| conserved domain protein [Listeria monocytogenes FSL F2-208] gi|313620067|gb|EFR91580.1| conserved domain protein [Listeria innocua FSL S4-378] gi|328467264|gb|EGF38344.1| flagellar motor switch protein [Listeria monocytogenes 1816] gi|328475660|gb|EGF46409.1| flagellar motor switch protein [Listeria monocytogenes 220] gi|332311123|gb|EGJ24218.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 78 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + + ID + K + ++ +K G V ++ +GK I E+ Sbjct: 5 HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64 Query: 296 YTIRITD 302 ++IT Sbjct: 65 MFVKITK 71 >gi|15644623|ref|NP_228488.1| flagellar motor switch protein FliY [Thermotoga maritima MSB8] Length = 162 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 49/151 (32%), Gaps = 2/151 (1%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + + +L TG + + + + +G + + D+ I+ + + Sbjct: 8 SQEEIDKLLSDSDTGGVLTPEE-KDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREE 66 Query: 69 KFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 K ++ F V + LV + + ++G S E + + Sbjct: 67 KMKNVKSDFSGEQVVVSVEYTEGLEGLNVLVLDKKLVAVIADLMMGGSGEVETEELDEIK 126 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSP 158 + + + + + L++ + T SP Sbjct: 127 LSAVGEAMNQMMGSAATSLSELLGITINISP 157 >gi|167841182|ref|ZP_02467866.1| translocation protein in type III secretion [Burkholderia thailandensis MSMB43] Length = 327 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 20/68 (29%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V I + L + L+ G ++ L G+ L + Sbjct: 260 DASVRIVAQAAAIDVPLDRLAALRSGDILEGPAIGDGLCTLKIGGRPFARGMLLDIDGRL 319 Query: 297 TIRITDRI 304 IRI + Sbjct: 320 AIRIEHFV 327 >gi|217422634|ref|ZP_03454137.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei 576] gi|217394865|gb|EEC34884.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei 576] Length = 432 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 340 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 399 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 400 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 429 >gi|167923472|ref|ZP_02510563.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei BCC215] Length = 209 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 117 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 176 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 177 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 206 >gi|53722641|ref|YP_111626.1| type III secretion protein [Burkholderia pseudomallei K96243] gi|76818024|ref|YP_335836.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei 1710b] gi|254264905|ref|ZP_04955770.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] gi|52213055|emb|CAH39093.1| putative type III secretion protein [Burkholderia pseudomallei K96243] gi|76582497|gb|ABA51971.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei 1710b] gi|254215907|gb|EET05292.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] Length = 428 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 336 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 395 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 396 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 425 >gi|251768328|ref|ZP_02270322.2| type III secretion inner membrane protein SctQ [Burkholderia mallei PRL-20] gi|243060179|gb|EES42365.1| type III secretion inner membrane protein SctQ [Burkholderia mallei PRL-20] Length = 100 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 1/95 (1%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 Q + + P ++ + + I+ ++ ++ L+ G V+ + Sbjct: 3 AGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARD 62 Query: 274 -CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L A G+ I L VG + +RI D Sbjct: 63 VPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 97 >gi|226198463|ref|ZP_03794031.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei Pakistan 9] gi|225929520|gb|EEH25539.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei Pakistan 9] Length = 432 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 340 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 399 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 400 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 429 >gi|254301370|ref|ZP_04968814.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] gi|157811448|gb|EDO88618.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] Length = 432 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 340 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 399 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 400 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 429 >gi|212711702|ref|ZP_03319830.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM 30120] gi|212685804|gb|EEB45332.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM 30120] Length = 309 Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 8/113 (7%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTTLKDVVTLK 260 +I + + E + + F + + L V + + T+ ++ TL+ Sbjct: 197 EGIFMIEQLAVAEDEQIDSAMEEEFVDETVRPFHLHGLTVKLTFVLGHSDITVGELDTLQ 256 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN--YTIRITDRINFDQKSL 311 G V ++ + AN + I EL +G + + I ++ K L Sbjct: 257 PGTVYSIGENKEREVKVYANKQLIAEGELTYIGDSDELGLEIKRLVSLGDKRL 309 >gi|126458111|ref|YP_001076229.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|242311035|ref|ZP_04810052.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei 1106b] gi|126231879|gb|ABN95292.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei 1106a] gi|242134274|gb|EES20677.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei 1106b] Length = 436 Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 344 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 403 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 404 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 433 >gi|255023254|ref|ZP_05295240.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208] Length = 78 Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + + ID + K + ++ +K G V ++ +GK I E+ Sbjct: 5 HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64 Query: 296 YTIRITD 302 ++IT Sbjct: 65 MFVKITK 71 >gi|312958827|ref|ZP_07773346.1| type III secretion system rscQ [Pseudomonas fluorescens WH6] gi|311286597|gb|EFQ65159.1| type III secretion system rscQ [Pseudomonas fluorescens WH6] Length = 335 Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 1/121 (0%) Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK-TYQLNVNID 243 ++ I++ + L + + + E ++D F + +L++ + Sbjct: 212 RLHGDIDDETGTACLTLTSIEETFVDEHFTAPDYSEPVEDEPVVDVFGHEPFDELSMALT 271 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 R TL ++ L G V+ A L + I +L V ++++ Sbjct: 272 VRCGTLNLTLGELRNLGPGSVLGITGYAPGVAGLYYGDRPIGQGQLVEVDGRLGLQVSRV 331 Query: 304 I 304 + Sbjct: 332 L 332 >gi|292488066|ref|YP_003530943.1| surface presentation of antigens protein SpaO [Erwinia amylovora CFBP1430] gi|292899277|ref|YP_003538646.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291199125|emb|CBJ46239.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291553490|emb|CBA20535.1| Surface presentation of antigens protein SpaO [Erwinia amylovora CFBP1430] Length = 307 Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GK 294 L + I+ ++ K TL ++ T++ G + P + + N K EL + Sbjct: 226 SDLPIEIEFVLDSKSVTLAELDTIEPGTLFPLNDCAEQRVKIYLNRKFFARGELVALDNG 285 Query: 295 NYTIRITDR 303 N + I Sbjct: 286 NLAVEIKQV 294 >gi|167906945|ref|ZP_02494150.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei NCTC 13177] Length = 359 Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291 + +L + + I+ + + L+ G VI L +G+ + EL Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339 Query: 292 VGKNYTIRITDR 303 VG++ +RI Sbjct: 340 VGEHLGVRIIRM 351 >gi|167567945|ref|ZP_02360861.1| SctQ [Burkholderia oklahomensis EO147] gi|167573181|ref|ZP_02366055.1| SctQ [Burkholderia oklahomensis C6786] Length = 431 Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 4/99 (4%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L S ++ L A + +L + + I+ + + L+ G VI Sbjct: 325 ILLKEFSMSEDADQADAGLAVATADEPARIGELELPVQFEIDTVSLPIDQLSVLEPGYVI 384 Query: 266 PFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + +G+ + EL VG++ +RI Sbjct: 385 ELPVAVADARLRIVVHGQTVGFGELVAVGEHLGVRIIRM 423 >gi|167840285|ref|ZP_02466969.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia thailandensis MSMB43] Length = 187 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291 +++ + I+ ++ ++ L+ G V+ + L A G+ I L Sbjct: 109 ADLGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQAIGGGRLVA 168 Query: 292 VGKNYTIRITDRINFD 307 VG + +RI D Sbjct: 169 VGAHLGVRIDRMAGDD 184 >gi|332159960|ref|YP_004296537.1| type III secretion system apparatus protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664190|gb|ADZ40834.1| Type III secretion system apparatus protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 315 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + I L D+ L +GQ + + + +G+ + L Sbjct: 241 ELEQLPQTLVMEIGRLTIPLADIKQLAVGQTLACQTQFYGEVNIRLHGQPVGRGRLLCCD 300 Query: 294 KNYTIRITD 302 + +RI Sbjct: 301 EQLVVRIDQ 309 >gi|167577438|ref|ZP_02370312.1| type III secretion system protein BsaV [Burkholderia thailandensis TXDOH] Length = 320 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ + ++ T+ + G V+P + ANG+ EL +VG Sbjct: 242 IDALPVTLEFVLQDERVTVAQLARCHPGLVLPL-RGVPGEVTIRANGQPFGIGELIQVGD 300 Query: 295 NYTIRIT 301 + + Sbjct: 301 QLAVEVK 307 >gi|167907267|ref|ZP_02494472.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei NCTC 13177] Length = 217 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 125 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 184 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 185 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 214 >gi|330862414|emb|CBX72573.1| hypothetical protein YEW_HJ33330 [Yersinia enterocolitica W22703] Length = 316 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + I L D+ L +GQ + + + +G+ + L Sbjct: 242 ELEQLPQTLVMEIGRLTIPLADIKQLAVGQTLACQTQFYGEVNIRLHGQPVGRGRLLCCD 301 Query: 294 KNYTIRITD 302 + +RI Sbjct: 302 EQLVVRIDQ 310 >gi|255018475|ref|ZP_05290601.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-515] Length = 64 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 ++ K L+ ++ VI +L+ NG I L RV ++ I++T Sbjct: 1 LEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMT 60 Query: 302 DRIN 305 + + Sbjct: 61 ELVR 64 >gi|975754|gb|AAC43845.1| SpaO [Salmonella enterica] Length = 303 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E ++E QL V ++ ++ K TL D+ + Q++ + Sbjct: 209 QHIEEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I + ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298 >gi|167850342|ref|ZP_02475850.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei B7210] Length = 227 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 135 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 194 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 195 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 224 >gi|325927674|ref|ZP_08188902.1| HrcQ protein [Xanthomonas perforans 91-118] gi|325541875|gb|EGD13389.1| HrcQ protein [Xanthomonas perforans 91-118] Length = 304 Score = 49.6 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 12/166 (7%) Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--MTIENV----ASSFVLI 200 + L + + + + +T +V A VL Sbjct: 134 QPAWLAALRVNTRLRIGGRTASAALLQSLRPGDVLLHCTASAAVTSGDVLWGIAGGVVLR 193 Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 P L S + Q+ + +L + + ++ +L + Sbjct: 194 APVRLNLQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSG 250 Query: 259 LKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 L+ GQ++ L G+ I + L VG++ ++I Sbjct: 251 LQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296 >gi|284007672|emb|CBA73390.1| type III secretion inner membrane protein YscQ,SpaO [Arsenophonus nasoniae] Length = 234 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 N S + QL + ++ + + +L + + + G + L Sbjct: 143 QDDHNASPESSTAIFD-LNQLALKVNFILQRQTFSLNTIKSWQTGTQLRLNSDAHCAIAL 201 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 NG+ EL +VG+ + + ++ +Q+ Sbjct: 202 EINGQIFAKGELIQVGEQLAVELHTLLSTEQE 233 >gi|213615825|ref|ZP_03371651.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 158 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + LK G V+P + N + I EL G Sbjct: 82 ELEQIPQQVLFEIGRASLEIGQLRQLKTGNVLPVGGCFAPEVTIRVNDRIIGQGELIACG 141 Query: 294 KNYTIRITD 302 + +RIT Sbjct: 142 NEFMVRITR 150 >gi|975758|gb|AAC43848.1| SpaO [Salmonella enterica] Length = 303 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E ++E QL V ++ ++ K TL D+ + Q++ + Sbjct: 209 QHIEEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I + ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298 >gi|313624713|gb|EFR94668.1| conserved domain protein [Listeria innocua FSL J1-023] Length = 78 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + + ID + K + ++ +K G V ++ +GK I E+ Sbjct: 5 HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64 Query: 296 YTIRITD 302 ++IT Sbjct: 65 MFVKITK 71 >gi|83717115|ref|YP_439032.1| type III secretion system protein BsaV [Burkholderia thailandensis E264] gi|167615589|ref|ZP_02384224.1| type III secretion system protein BsaV [Burkholderia thailandensis Bt4] gi|257142140|ref|ZP_05590402.1| type III secretion system protein BsaV [Burkholderia thailandensis E264] gi|83650940|gb|ABC35004.1| type III secretion system protein BsaV [Burkholderia thailandensis E264] Length = 320 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ + ++ T+ + G V+P + ANG+ EL +VG Sbjct: 242 IDALPVTLEFVLQDERVTVAQLAGCHPGLVLPL-RGVPGEVTIRANGQPFGIGELIQVGD 300 Query: 295 NYTIRIT 301 + + Sbjct: 301 QLAVEVK 307 >gi|325917012|ref|ZP_08179251.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas vesicatoria ATCC 35937] gi|325536763|gb|EGD08520.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas vesicatoria ATCC 35937] Length = 345 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 7/103 (6%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 PQ+ LL+T + + + L L + + ++ +L + L+ Sbjct: 241 PQQMLLET---APAMHQDTPESDTSLS---TTDVAALELPVHLEVDQLALSLSVLSGLQP 294 Query: 262 GQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 GQ++ L G+ I L VG + ++I Sbjct: 295 GQILELSVPVDQADIRLVVYGQTIGVGRLLAVGDHLGVQILSM 337 >gi|260768787|ref|ZP_05877721.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972] gi|260616817|gb|EEX42002.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972] Length = 253 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 8/90 (8%), Positives = 30/90 (33%), Gaps = 3/90 (3%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + Q + + + + NI+ + + ++ DV + +G I Sbjct: 164 ELLDYFSDGLKKQKDFNVHDVQHQLNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY 223 Query: 271 EKTCAILSANGKEIYSCELGR-VGKNYTIR 299 ++ + ++ +L ++ Sbjct: 224 --DLLDVNVENQTLFKGQLIVGENAQLGVK 251 >gi|163732489|ref|ZP_02139934.1| flagellar motor switch protein FliN, putative [Roseobacter litoralis Och 149] gi|161393849|gb|EDQ18173.1| flagellar motor switch protein FliN, putative [Roseobacter litoralis Och 149] Length = 97 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 4/72 (5%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293 + + + + + ++D+VTL V+ L + I L G Sbjct: 21 VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVDDPVDLYIGDRLIARGMLEEKEGDQS 80 Query: 294 KNYTIRITDRIN 305 +R+T+ I+ Sbjct: 81 GQLIVRLTEVID 92 >gi|153950005|ref|YP_001402769.1| type III secretion system protein [Yersinia pseudotuberculosis IP 31758] gi|152961500|gb|ABS48961.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pseudotuberculosis IP 31758] Length = 320 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 9/153 (5%) Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLISL 214 L + L++ E ++M ++ + PQ + + Sbjct: 156 WQSGLVAGWCHLSLRQLQQLRPGEG-LRLSMAAELDKEACWLWHHASPQIYIKLEGGNRM 214 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNV-------NIDTRINLKKTTLKDVVTLKIGQVIPF 267 + Q +E A V + I L ++ L +GQ + Sbjct: 215 TIQQINEASDPLACGSRAESLPLAAVQFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + NG+ + L R + +RI Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDEQLVVRI 307 >gi|289433976|ref|YP_003463848.1| flagellar motor switch protein fliN, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|315301943|ref|ZP_07872944.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|289170220|emb|CBH26760.1| flagellar motor switch protein fliN, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313629685|gb|EFR97817.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|313639060|gb|EFS04047.1| conserved domain protein [Listeria seeligeri FSL S4-171] Length = 78 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + + ID + K + ++ +K G V ++ +GK I E+ Sbjct: 5 HNIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILTKDGK 64 Query: 296 YTIRITD 302 ++IT Sbjct: 65 MFVKITK 71 >gi|973269|gb|AAC43938.1| SpaO [Salmonella enterica] Length = 303 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 37/90 (41%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E ++E QL V ++ + K TL ++ + Q++ + Sbjct: 209 QHIEEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I + ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298 >gi|973273|gb|AAC43941.1| SpaO [Salmonella enterica] Length = 303 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 37/90 (41%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E ++E QL V ++ + K TL ++ + Q++ + Sbjct: 209 QHIEEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I + ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298 >gi|78045979|ref|YP_362154.1| HrcQ protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034409|emb|CAJ22054.1| HrcQ protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 304 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 12/166 (7%) Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--MTIENV----ASSFVLI 200 + L + + + + +T +V A VL Sbjct: 134 QPAWLAALRVNTRLRIGGRTASAALLQSLRPGDVLLHCTASAAVTSGDVLWGIAGGVVLR 193 Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 P L S + Q+ + +L + + ++ +L + Sbjct: 194 APVRLNLQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSG 250 Query: 259 LKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 L+ GQ++ L G+ I + L VG++ ++I Sbjct: 251 LQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296 >gi|167915629|ref|ZP_02502720.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei 112] Length = 238 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 146 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 205 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 206 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 235 >gi|315126003|ref|YP_004068006.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913] gi|315014517|gb|ADT67855.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913] Length = 301 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 68/260 (26%), Gaps = 30/260 (11%) Query: 50 FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109 DV+IS S + S + + F+ + Sbjct: 57 LFNDSRFDVEISPCSHSTINSW-FKES--PRIFLACPLFAPTQGEAFLALDFQSAHKTAD 113 Query: 110 NLLGASHETIPQLYNR------SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163 LG + LS E ++ R L + + Q E Sbjct: 114 LCLGGQFNNSDNSSHDYSPTTNELSATESRICGRL-------LQRQVQGIQGLLFR-ERS 165 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223 + ++K+ + +E+ S+ L +P Q Sbjct: 166 ALLGEIQKSHALPEALQYLAFKVRFILESQVISWFLWLPISF----------FCAADSEQ 215 Query: 224 SEDLIDPFARKTYQL-NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 D + V + KK TLK + G V+P A+ + K Sbjct: 216 DPASSDTLNTDMWAQFAVQGQIEMAKKKVTLKQLKACVAGGVLPIEL--NEAALFNLGHK 273 Query: 283 EIYSCELGRVGKNYTIRITD 302 +I+ ++ +IT Sbjct: 274 QIFKGQVVEQEAGLAFQITQ 293 >gi|170026116|ref|YP_001722621.1| type III secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169752650|gb|ACA70168.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia pseudotuberculosis YPIII] Length = 320 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 9/153 (5%) Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLISL 214 L + L++ E ++M ++ + PQ + + Sbjct: 156 WQSGLVAGWCHLSLRQLQQLRPGEG-LRLSMAAELDKEACWLWHHASPQIYIKLEGGNRM 214 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNV-------NIDTRINLKKTTLKDVVTLKIGQVIPF 267 + Q +E A V + I L ++ L +GQ + Sbjct: 215 TIQQINEASDPLACGSRAESLPLAAVQFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + NG+ + L R + +RI Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDEQLVVRI 307 >gi|285018282|ref|YP_003375993.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans GPE PC73] gi|283473500|emb|CBA16003.1| probable xanthomonas secretion apparatus protein [Xanthomonas albilineans] Length = 346 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 9/87 (10%) Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 S + V + L ++ L+ G V+P ++ ANG Sbjct: 268 ESSPIWVGEL-------PVELSFAFEPLALKLAELSALRPGDVVPLESGV--RLLIHANG 318 Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQ 308 + + EL V +T + Sbjct: 319 RPVGEAELVEVEGVLAAEVTAIHLKSE 345 >gi|300936201|ref|ZP_07151137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 21-1] gi|300458658|gb|EFK22151.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 21-1] Length = 315 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L V I+ + K L ++ L ++IP L + + NG EL V Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIIPLLPEAEKNIEIRVNGALTGYGELVEVDDK 299 Query: 296 YTIRITDRINFDQKS 310 + I ++ + Sbjct: 300 LGVEIHSWLSGNNNV 314 >gi|254499105|ref|ZP_05111795.1| hypothetical protein LDG_3178 [Legionella drancourtii LLAP12] gi|254351644|gb|EET10489.1| hypothetical protein LDG_3178 [Legionella drancourtii LLAP12] Length = 234 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%) Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 D + V + + K ++ + +++G V+ H T L + + E Sbjct: 159 DSLDEALAEHTVKLCLELLPSKLSVNHLAGIQVGDVLSTTHPLSTPLRLICGNELLAQAE 218 Query: 289 LGRVGKNYTI 298 LG + +I Sbjct: 219 LGYSAHHKSI 228 >gi|259908639|ref|YP_002648995.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96] gi|224964261|emb|CAX55768.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96] gi|283478611|emb|CAY74527.1| Surface presentation of antigens protein SpaO [Erwinia pyrifoliae DSM 12163] Length = 308 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 2/87 (2%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + D + + L + I+ ++ K TTL ++ T++ G P + + Sbjct: 209 TDQQEEYRDEEETLHKW-SDLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKI 267 Query: 278 SANGKEIYSCELGRV-GKNYTIRITDR 303 N K EL + N + I Sbjct: 268 YLNRKFFARGELVALDNGNLAVEIRQI 294 >gi|310767461|gb|ADP12411.1| Type III secretion apparatus [Erwinia sp. Ejp617] Length = 308 Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 2/87 (2%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + D + + L + I+ ++ K TTL ++ T++ G P + + Sbjct: 209 TDQQEEYRDEEETLHKW-SDLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKI 267 Query: 278 SANGKEIYSCELGRV-GKNYTIRITDR 303 N K EL + N + I Sbjct: 268 YLNRKFFARGELVALDNGNLAVEIRQI 294 >gi|33596842|ref|NP_884485.1| putative type III secretion protein [Bordetella parapertussis 12822] gi|33573543|emb|CAE37534.1| putative type III secretion protein [Bordetella parapertussis] Length = 359 Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294 Q+ V + + ++ TL + +L G ++ ANG + S L + Sbjct: 286 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 345 Query: 295 NYTI 298 + Sbjct: 346 RIGV 349 >gi|315498407|ref|YP_004087211.1| surface presentation of antigens (spoa) protein [Asticcacaulis excentricus CB 48] gi|315416419|gb|ADU13060.1| surface presentation of antigens (SPOA) protein [Asticcacaulis excentricus CB 48] Length = 93 Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I + ++ ++ + G VIP RE + AN + E+ + +I + Sbjct: 20 EISVLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEKISIVV 79 Query: 301 TD 302 T Sbjct: 80 TR 81 >gi|315180490|gb|ADT87404.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 108 Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 9/90 (10%), Positives = 30/90 (33%), Gaps = 3/90 (3%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + Q + I + + NI+ + + ++ DV + +G I Sbjct: 19 ELLDYFSDGLKKQKDFNIHDVQHQLNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY 78 Query: 271 EKTCAILSANGKEIYSCELGR-VGKNYTIR 299 ++ + ++ +L ++ Sbjct: 79 --DLLDVNVENQTLFKGQLIVGENAQLGVK 106 >gi|33600616|ref|NP_888176.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33568215|emb|CAE32128.1| putative type III secretion protein [Bordetella bronchiseptica RB50] Length = 359 Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294 Q+ V + + ++ TL + +L G ++ ANG + S L + Sbjct: 286 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 345 Query: 295 NYTI 298 + Sbjct: 346 RIGV 349 >gi|238759390|ref|ZP_04620555.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236] gi|238702417|gb|EEP94969.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236] Length = 311 Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 2/92 (2%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF--ARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + + + E L + +L V + + + L+++ ++ G Sbjct: 201 VIEENIDNIEEVEETVPTLDEVLPENLPSHFDVTKLTVKLTFVLGHSEIPLEELAHIQPG 260 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + AN + + EL +G Sbjct: 261 AVYSLGADKDREVKVYANKQLVAEGELVYIGD 292 >gi|259909717|ref|YP_002650073.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96] gi|224965339|emb|CAX56871.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96] gi|283479803|emb|CAY75719.1| Type III secretion protein HrcQa [Erwinia pyrifoliae DSM 12163] Length = 341 Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTL 253 L +P LL + + + +E F + L ++++ R TL Sbjct: 223 LQLPHHFLLNHLESTALNSADDDALNEGSQPEFLSGEERPQLASLPLSLEVRCGRTALTL 282 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ L+ G V+ + A L I EL V + Sbjct: 283 GELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 324 >gi|261344592|ref|ZP_05972236.1| putative surface presentation of antigens protein [Providencia rustigianii DSM 4541] gi|282567506|gb|EFB73041.1| putative surface presentation of antigens protein [Providencia rustigianii DSM 4541] Length = 309 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 L V + + + +L ++ ++ G + ++ + AN + EL +G Sbjct: 230 NVNDLTVKLTFVLGHSEVSLAELNHMQPGTIFSIGENKEREVKVYANKQLFAEGELTYIG 289 Query: 294 KN--YTIRITDRINFDQKSL 311 ++ + IT ++ K L Sbjct: 290 ESEELGLEITRLVSLGDKRL 309 >gi|33593241|ref|NP_880885.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|29603233|emb|CAC79578.1| bscQ [Bordetella pertussis Tohama I] gi|33563616|emb|CAE42517.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382650|gb|AEE67497.1| putative type III secretion protein [Bordetella pertussis CS] Length = 359 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294 Q+ V + + ++ TL + +L G ++ ANG + S L + Sbjct: 286 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 345 Query: 295 NYTI 298 + Sbjct: 346 RIGV 349 >gi|167743329|ref|ZP_02416103.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 14] Length = 177 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277 + + P ++ + + I+ ++ ++ L+ G V+ + L Sbjct: 85 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 144 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A G+ I L VG + +RI D Sbjct: 145 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 174 >gi|16520043|ref|NP_444163.1| component RhcQ of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2494558|sp|P55719|Y4YK_RHISN RecName: Full=Probable translocation protein Y4yK gi|2182736|gb|AAB91950.1| component RhcQ of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 358 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 28/76 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + +L ++ + G V + ANG+ I ++ R+ Sbjct: 283 ADLDDIEIVLVFECGRWPISLGELRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRI 342 Query: 293 GKNYTIRITDRINFDQ 308 G + IR+ R+ + Sbjct: 343 GDDLGIRLRGRLACND 358 >gi|312597800|gb|ADQ89915.1| RscQ [Pseudomonas fluorescens] Length = 367 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 31/101 (30%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 E ++ + +E + + L + + R + TL ++ L G Sbjct: 263 AEAAEHPESAYAAADTEEAPMTEPVAAEVPERFDDLPLALTIRCGHLQLTLGELRNLAPG 322 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 V+ A L + + EL V ++I Sbjct: 323 AVLQVQGVAPGTAALFYGERALAHGELVEVDGRLGLQIAHV 363 >gi|313634375|gb|EFS00970.1| conserved domain protein [Listeria seeligeri FSL N1-067] Length = 78 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + + ID + K + ++ +K G V ++ +GK I E+ Sbjct: 5 HSIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILTKDGK 64 Query: 296 YTIRITD 302 ++IT Sbjct: 65 MFVKITK 71 >gi|89898774|ref|YP_515884.1| type III secretion system protein [Chlamydophila felis Fe/C-56] gi|89332146|dbj|BAE81739.1| type III secretion flagellar motor switch domain [Chlamydophila felis Fe/C-56] Length = 371 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 5/84 (5%) Query: 225 EDLIDPFARKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSA 279 E+ ++ + + + ++ T+++ + L G ++ L Sbjct: 288 EEPVEETSESLPAAPLPGNCKLVAEVSRYSLTVEEFLKLSQGSILNLNGVHPSRGVDLIL 347 Query: 280 NGKEIYSCELGRVGKNYTIRITDR 303 NG ++ E+ +G IR+ + Sbjct: 348 NGAKVGRGEIVSLGDVLGIRVLEV 371 >gi|330812431|ref|YP_004356893.1| type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380539|gb|AEA71889.1| putative type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 367 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 31/101 (30%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 E ++ + +E + + L + + R + TL ++ L G Sbjct: 263 AEAAEHPESAYAAADTEEAPMTEPVAAEVPERFDDLPLALTIRCGHLQLTLGELRNLAPG 322 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 V+ A L + + EL V ++I Sbjct: 323 AVLQVQGVAPGTAALFYGERALAHGELVEVDGRLGLQIAHV 363 >gi|310766419|gb|ADP11369.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcQ protein [Erwinia sp. Ejp617] Length = 338 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTL 253 L +P LL + + + +E F + L ++++ R TL Sbjct: 220 LQLPHHFLLNHLESTALNSADDDALTEGSQPEFLSGEERPQLASLPLSLEVRCGRTALTL 279 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ L+ G V+ + A L I EL V + Sbjct: 280 GELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 321 >gi|167840169|ref|ZP_02466853.1| type III secretion system protein BsaV [Burkholderia thailandensis MSMB43] Length = 168 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ ++ ++ T+ + G V+P + ANG EL +VG+ Sbjct: 90 VAALPVTLEFVLHDERVTVAQLAGCHPGLVLPLRGAPGE-VTIRANGLPFGRGELIQVGE 148 Query: 295 NYTIRIT 301 + + Sbjct: 149 QLAVEVK 155 >gi|312884809|ref|ZP_07744501.1| putative flagellar motor switch protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367461|gb|EFP95021.1| putative flagellar motor switch protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 272 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 13/128 (10%), Positives = 45/128 (35%), Gaps = 12/128 (9%) Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 + + +T + + + Q+ + + + N+S + F Q + Sbjct: 154 IWVQLMITTKEAHGVIDIFLDQQLIDTLSAELELTPNESMYED------FCLSLTQTPIK 207 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 ++ ++ K L ++++L+ ++P A + ++ + + Sbjct: 208 LNIVLSKKTMPLSNLLSLRPNDILPIDLSSTAPAH--VGEEYLFRGRVAERDSQLVL--- 262 Query: 302 DRINFDQK 309 I+ D++ Sbjct: 263 -IISNDKE 269 >gi|91791431|ref|YP_561082.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] gi|91713433|gb|ABE53359.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] Length = 103 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 26/74 (35%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 Q + ++ I ++ ++ LK ++ + + L I L V + Sbjct: 30 LEQTKIELNVNIGDVSMSISELKELKENSIVKLAQKVDSEFELKWKDVVIAKGRLVAVDE 89 Query: 295 NYTIRITDRINFDQ 308 + IT + +Q Sbjct: 90 YLALEITQVTSNEQ 103 >gi|238787476|ref|ZP_04631274.1| Type III secretion system apparatus protein [Yersinia frederiksenii ATCC 33641] gi|238724263|gb|EEQ15905.1| Type III secretion system apparatus protein [Yersinia frederiksenii ATCC 33641] Length = 307 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 23/68 (33%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + I L+++ L +GQ + R + +G+ + S L Sbjct: 234 LDDLPQTLVMEIGRLTLPLREIKQLAVGQTLACQTRCYGEVNIRLHGQPVGSGSLLSCDG 293 Query: 295 NYTIRITD 302 +RI Sbjct: 294 ELVVRIEQ 301 >gi|163738044|ref|ZP_02145460.1| surface presentation of antigens (SPOA) protein [Phaeobacter gallaeciensis BS107] gi|163742560|ref|ZP_02149946.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis 2.10] gi|161384145|gb|EDQ08528.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis 2.10] gi|161388660|gb|EDQ13013.1| surface presentation of antigens (SPOA) protein [Phaeobacter gallaeciensis BS107] Length = 98 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302 + ++D+V L ++ R + L + + +L G +R+T+ Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89 Query: 303 R 303 Sbjct: 90 I 90 >gi|118592625|ref|ZP_01550015.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614] gi|118434676|gb|EAV41327.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614] Length = 360 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 54/177 (30%), Gaps = 10/177 (5%) Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++ + ++ E +P ++++ V + Sbjct: 184 RMIPIQVERLVGTAELMWVEICELAPGDCILISEAAAADQLTVIASDRV----FAFEEVD 239 Query: 193 VASSFVLIIPQETLL-KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN--IDTRINLK 249 S +P + LL K+ + + E+ + ++ + + + + R+ Sbjct: 240 EGWSCAKTVPLKQLLFKSRDAGETLLDNCESALPEFLEEVGKFVPEAPLKIGLSFRLGSA 299 Query: 250 KTTLKDVVTLKIGQVIPFLHREKT---CAILSANGKEIYSCELGRVGKNYTIRITDR 303 + ++ + G + + AN I +L RVG +R++ Sbjct: 300 NLSATEIANWRPGAIANLPDSLNESNTEVKVVANDTTIAQGDLVRVGDRVGVRLSRI 356 >gi|84621751|ref|YP_449123.1| HrcQ protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|12802688|gb|AAK08059.1|AF320050_3 HrcQ [Xanthomonas oryzae pv. oryzae] gi|9711592|dbj|BAB07861.1| HrcQ [Xanthomonas oryzae pv. oryzae] gi|84365691|dbj|BAE66849.1| HrcQ protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 304 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 S + Q+ + +L + + ++ +L + L+ GQ+ Sbjct: 200 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 256 Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 + L G+ I + L VG++ ++I Sbjct: 257 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296 >gi|330819400|ref|YP_004348262.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia gladioli BSR3] gi|327371395|gb|AEA62750.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia gladioli BSR3] Length = 474 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 1/70 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVG 293 + + + I+ L + L G V+ L +G+ + EL VG Sbjct: 397 VGAIELPVQFEIDTVALPLDQLSALGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVG 456 Query: 294 KNYTIRITDR 303 ++ +RI Sbjct: 457 EHLGVRIIRM 466 >gi|7288130|dbj|BAA92825.1| hrpD1 [Xanthomonas oryzae pv. oryzae] gi|24251297|gb|AAN46416.1| HrcQ [Xanthomonas oryzae pv. oryzae] gi|50428355|dbj|BAD29992.1| HrcQ [Xanthomonas oryzae pv. oryzae] Length = 304 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 S + Q+ + +L + + ++ +L + L+ GQ+ Sbjct: 200 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 256 Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 + L G+ I + L VG++ ++I Sbjct: 257 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296 >gi|254475007|ref|ZP_05088393.1| Surface presentation of antigens protein [Ruegeria sp. R11] gi|214029250|gb|EEB70085.1| Surface presentation of antigens protein [Ruegeria sp. R11] Length = 98 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302 + ++D+V L ++ R + L + + +L G +R+T+ Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89 Query: 303 R 303 Sbjct: 90 I 90 >gi|299069227|emb|CBJ40487.1| type III secretion system apparatus protein HrcQ [Ralstonia solanacearum CMR15] Length = 361 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 QL V + + + L ++ L+ V+ + + L +G+ + +L VG Sbjct: 285 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 344 Query: 294 KNYTIRI 300 + ++I Sbjct: 345 EQLGLQI 351 >gi|219566951|dbj|BAH04982.1| Hrp conserved transmembrane protein [Ralstonia solanacearum] Length = 354 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 QL V + + + L ++ L+ V+ + + L +G+ + +L VG Sbjct: 278 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 337 Query: 294 KNYTIRI 300 + ++I Sbjct: 338 EQLGLQI 344 >gi|170690584|ref|ZP_02881751.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia graminis C4D1M] gi|170145019|gb|EDT13180.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia graminis C4D1M] Length = 446 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVG 293 +L++ + ++ L + L+ G V+ L +G+ I EL VG Sbjct: 369 IGELDLPVQFEVDTVALPLSQLYALRPGYVLELPTPVADAQLKLVTHGQTIGYGELVTVG 428 Query: 294 KNYTIRITDRINFD 307 + IRI + D Sbjct: 429 DHLGIRILRMAHGD 442 >gi|76152315|gb|ABA39816.1| HrcQ [Erwinia pyrifoliae] Length = 338 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR-----KTYQLNVNIDTRINLKKTTL 253 L +P LL + + + +E F + L ++++ R TL Sbjct: 220 LQLPHHFLLNHLESTALNSADDDALNEGSQPEFLSGEDNPQLASLPLSLEVRCGRTALTL 279 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ L+ G V+ + A L I EL V + Sbjct: 280 GELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 321 >gi|6708103|gb|AAF25800.1|AF172245_2 BscQ [Bordetella bronchiseptica] Length = 123 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294 Q+ V + + ++ TL + +L G ++ ANG + S L + Sbjct: 50 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 109 Query: 295 NYTI 298 + Sbjct: 110 RIGV 113 >gi|212702681|ref|ZP_03310809.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098] gi|212673953|gb|EEB34436.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098] Length = 398 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 1/76 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVG 293 L + + I L ++ L G + + + G+ + L VG Sbjct: 309 VGALELPVVFEIGRLHLRLDELAALVPGHTLALGGETPSPVVDIRVAGQLLAQGRLVDVG 368 Query: 294 KNYTIRITDRINFDQK 309 ++IT + Sbjct: 369 GIPGVQITRMHAAGRD 384 >gi|8996040|gb|AAF82339.1|AF005744_18 YsaQ [Yersinia enterocolitica] gi|15088608|gb|AAK84119.1|AF369954_17 YsaQ [Yersinia enterocolitica] Length = 312 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 2/92 (2%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF--ARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + + +++ E L + +L V + + + L+++ ++ G Sbjct: 202 VIEENIDDMQETEDTVPTLDEVLPEYLPSRFDVAKLTVKLTFVLGHSEILLEELAHIQPG 261 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + AN + + EL +G Sbjct: 262 SVYSLGADKDREVKVYANKQLVAEGELIYIGD 293 >gi|318607489|emb|CBY28987.1| type III secretion inner membrane protein (YscQ,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] Length = 316 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + I L D+ L +GQ + + + +G+ + L Sbjct: 242 ELEQLPQTLVMEIGRLTIPLADIKQLAVGQTLACQTQFYGEVNIRLHGQPVGRGSLLCCD 301 Query: 294 KNYTIRITD 302 + +RI Sbjct: 302 EQLVVRIDQ 310 >gi|331654352|ref|ZP_08355352.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli M718] gi|331047734|gb|EGI19811.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli M718] Length = 315 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + +++ D +L V I+ + K L ++ L ++I L + Sbjct: 221 KKSEIEINDENDDQMINSYEELPVKIEFVLGKKVMNLYEIDELCAKRIISLLPESEKNIE 280 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEIHSWLSRNNNV 314 >gi|123443728|ref|YP_001007699.1| type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090689|emb|CAL13565.1| type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 312 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 2/92 (2%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF--ARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + + +++ E L + +L V + + + L+++ ++ G Sbjct: 202 VIEENIDDMQETEDTVPTLDEVLPEYLPSRFDVAKLTVKLTFVLGHSEILLEELAHIQPG 261 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + AN + + EL +G Sbjct: 262 SVYSLGADKDREVKVYANKQLVAEGELIYIGD 293 >gi|167030913|gb|ABZ05781.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum] Length = 389 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 25/75 (33%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 D L V + R TL ++ L G V+ A+L + S Sbjct: 291 SDNVTENLPPLPVTLHIRCGSLTMTLAELQHLASGSVLTLRDVVPGQALLYHGDIALASG 350 Query: 288 ELGRVGKNYTIRITD 302 +L V ++IT Sbjct: 351 DLVDVKGRLGLQITQ 365 >gi|300693807|ref|YP_003749780.1| type III secretion system apparatus protein hrcq [Ralstonia solanacearum PSI07] gi|299075844|emb|CBJ35153.1| type III secretion system apparatus protein HrcQ [Ralstonia solanacearum PSI07] Length = 355 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 QL V + + + L ++ L+ V+ + + L +G+ + +L VG Sbjct: 279 LEQLEVPVHLELAVMGMPLSELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338 Query: 294 KNYTIRI 300 + ++I Sbjct: 339 EQLGLQI 345 >gi|58579705|ref|YP_198721.1| hypothetical protein XOO0082 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424299|gb|AAW73336.1| hrpD1 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 334 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 S + Q+ + +L + + ++ +L + L+ GQ+ Sbjct: 230 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 286 Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 + L G+ I + L VG++ ++I Sbjct: 287 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 326 >gi|332280452|ref|ZP_08392865.1| surface presentation of antigens protein SpaO [Shigella sp. D9] gi|332102804|gb|EGJ06150.1| surface presentation of antigens protein SpaO [Shigella sp. D9] Length = 190 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + +L V I+ + K L ++ L ++I L + Sbjct: 96 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 155 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 156 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 189 >gi|111146916|gb|ABH07401.1| HrcQ [Xanthomonas oryzae pv. oryzicola] Length = 304 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 S + Q+ + +L + + ++ +L + L+ GQ+ Sbjct: 200 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 256 Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 + L G+ I + L VG++ ++I Sbjct: 257 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296 >gi|167584012|ref|ZP_02376400.1| type III secretion inner membrane protein SctQ [Burkholderia ubonensis Bu] Length = 144 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291 +++ + I+ ++ ++ L+ G V+ + L A G+ I L Sbjct: 66 ADLGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVA 125 Query: 292 VGKNYTIRITDRINFD 307 VG + +RI D Sbjct: 126 VGAHLGVRIDRMAGDD 141 >gi|50121008|ref|YP_050175.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560423|gb|AAS20383.1| HrcQ [Pectobacterium atrosepticum] gi|49611534|emb|CAG74982.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 405 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 28/84 (33%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 D L + + R TL ++ L G V+ A L + S Sbjct: 307 SDNVTESLPPLPITLHIRCGSLTMTLAELQHLASGSVLTLRDVVPGQAWLYHGDIALASG 366 Query: 288 ELGRVGKNYTIRITDRINFDQKSL 311 +L V ++IT R + + L Sbjct: 367 DLVDVEGRLGLQITQRFSTPKPML 390 >gi|4494847|gb|AAD21320.1| HrcQ [Xanthomonas euvesicatoria] Length = 268 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 12/166 (7%) Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--MTIENV----ASSFVLI 200 + L + + + + +T +V A VL Sbjct: 98 QPAWLAALRVNTRLRIGGRTASAALLQSLRPGDVLLHCTASAAVTSGDVLWGIAGGVVLR 157 Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 P L S + Q+ + +L + + ++ +L + Sbjct: 158 APVRLNLQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSG 214 Query: 259 LKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 L+ GQ++ L G+ I + L VG++ ++I Sbjct: 215 LQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 260 >gi|300310128|ref|YP_003774220.1| type III secretion system protein [Herbaspirillum seropedicae SmR1] gi|300072913|gb|ADJ62312.1| type III secretion system protein [Herbaspirillum seropedicae SmR1] Length = 400 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +L + + + +L + L V+ +++ G E+ E+ V Sbjct: 330 ELPLTLQVELGRLSLSLSQLRALGEQVVLELHGASAQALRITSAGVELGRGEVVSVDGRL 389 Query: 297 TIRITD 302 +RI Sbjct: 390 GVRIVR 395 >gi|209920318|ref|YP_002294402.1| putative type III secretion protein [Escherichia coli SE11] gi|209913577|dbj|BAG78651.1| putative type III secretion protein [Escherichia coli SE11] Length = 190 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + +L V I+ + K L ++ L ++I L + Sbjct: 96 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 155 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 156 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 189 >gi|325921928|ref|ZP_08183739.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas gardneri ATCC 19865] gi|325547630|gb|EGD18673.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas gardneri ATCC 19865] Length = 321 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 42/165 (25%), Gaps = 12/165 (7%) Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF--VTTINMNMTIE----NVASSFVLII 201 + + L + + + + VL Sbjct: 152 PAWMSALRVTTRLRIGQRTAAAALLQSLRPGDVLLHALATAPVRSGELLWGIPGGAVLRA 211 Query: 202 PQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P L + + Q+ A L + + ++ +L + L Sbjct: 212 PVRLTLQQMILETAPTMQHDMPASDSSSP---ATDVAALELPVQLEVDQLALSLSVLSGL 268 Query: 260 KIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 + GQ++ L G+ I L VG++ ++I Sbjct: 269 QPGQILELSVPVDQADIRLVVYGQTIGIGRLLAVGEHLGVQILSM 313 >gi|300950615|ref|ZP_07164517.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 116-1] gi|300958196|ref|ZP_07170350.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 175-1] gi|301643798|ref|ZP_07243835.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 146-1] gi|307139551|ref|ZP_07498907.1| surface presentation of antigens protein SpaO [Escherichia coli H736] gi|331643551|ref|ZP_08344682.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli H736] gi|300315148|gb|EFJ64932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 175-1] gi|300450095|gb|EFK13715.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 116-1] gi|301077831|gb|EFK92637.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 146-1] gi|309703223|emb|CBJ02558.1| type III secretion system protein [Escherichia coli ETEC H10407] gi|331037022|gb|EGI09246.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli H736] Length = 315 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 27/84 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L ++ L ++I L + Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + NG EL V + I Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304 >gi|301026122|ref|ZP_07189596.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 196-1] gi|299879817|gb|EFI88028.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 196-1] Length = 315 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 27/84 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L ++ L ++I L + Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + NG EL V + I Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304 >gi|312171086|emb|CBX79345.1| Type III secretion protein HrcQa [Erwinia amylovora ATCC BAA-2158] Length = 338 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + L ++++ R TL ++ L+ G V+ + A L I EL V Sbjct: 260 QLASLPLSLEVRCGRTALTLGELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319 Query: 294 KN 295 + Sbjct: 320 GH 321 >gi|256024630|ref|ZP_05438495.1| surface presentation of antigens protein SpaO [Escherichia sp. 4_1_40B] Length = 315 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 27/84 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L ++ L ++I L + Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + NG EL V + I Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304 >gi|292487017|ref|YP_003529887.1| type III secretion protein HrcQa [Erwinia amylovora CFBP1430] gi|292900598|ref|YP_003539967.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|89474869|gb|AAB06004.2| HrcQ [Erwinia amylovora] gi|291200446|emb|CBJ47575.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552434|emb|CBA19479.1| Type III secretion protein HrcQa [Erwinia amylovora CFBP1430] Length = 338 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + L ++++ R TL ++ L+ G V+ + A L I EL V Sbjct: 260 QLASLPLSLEVRCGRTALTLGELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319 Query: 294 KN 295 + Sbjct: 320 GH 321 >gi|293416109|ref|ZP_06658749.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B185] gi|291432298|gb|EFF05280.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B185] Length = 315 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 27/84 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L ++ L ++I L + Sbjct: 221 KKSESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIE 280 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + NG EL V + I Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304 >gi|15803390|ref|NP_289423.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 EDL933] gi|15832980|ref|NP_311753.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 str. Sakai] gi|195936472|ref|ZP_03081854.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 str. EC4024] gi|217327510|ref|ZP_03443593.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7 str. TW14588] gi|254794807|ref|YP_003079644.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 str. TW14359] gi|261226167|ref|ZP_05940448.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256579|ref|ZP_05949112.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. FRIK966] gi|12517368|gb|AAG57982.1|AE005515_4 typeIII secretion apparatus protein [Escherichia coli O157:H7 str. EDL933] gi|13363198|dbj|BAB37149.1| type III secretion protein EpaO [Escherichia coli O157:H7 str. Sakai] gi|217319877|gb|EEC28302.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7 str. TW14588] gi|254594207|gb|ACT73568.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. TW14359] gi|320189200|gb|EFW63859.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 str. EC1212] gi|326339059|gb|EGD62874.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 str. 1044] Length = 328 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 28/84 (33%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + +L V I+ + K L ++ L ++I L + Sbjct: 234 KKSESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIE 293 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + NG EL V + I Sbjct: 294 IRVNGALTGYGELVEVDDKLGVEI 317 >gi|17549082|ref|NP_522422.1| Hrp conserved protein HRCQ [Ralstonia solanacearum GMI1000] gi|6066702|emb|CAB58248.1| HrpQ protein [Ralstonia solanacearum] gi|17431333|emb|CAD18012.1| hrp conserved protein hrcq [Ralstonia solanacearum GMI1000] gi|1097281|prf||2113360G hrpQ gene Length = 354 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 QL V + + + L ++ L+ V+ + + L +G+ + +L VG Sbjct: 278 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVSVRLVCHGQTLGHGQLVAVG 337 Query: 294 KNYTIRI 300 + ++I Sbjct: 338 EQLGLQI 344 >gi|329889297|ref|ZP_08267640.1| type III secretion system protein [Brevundimonas diminuta ATCC 11568] gi|328844598|gb|EGF94162.1| type III secretion system protein [Brevundimonas diminuta ATCC 11568] Length = 209 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKN 295 + + + LK + L+ G ++P + L + G+ L +G+ Sbjct: 135 DTPIAVTVDLGETAVPLKTLTELRPGAILPLTGLDAEMRVTLRSAGQAFARGRLVSLGEA 194 Query: 296 YTIRITDRINFDQ 308 Y + I + + Sbjct: 195 YAVLIDAVADPKE 207 >gi|224584669|ref|YP_002638467.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469196|gb|ACN47026.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 299 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 223 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 282 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 283 TLGVEIHEWLSE 294 >gi|166714029|ref|ZP_02245236.1| hrpD1 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 317 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 S + Q+ + +L + + ++ +L + L+ GQ+ Sbjct: 213 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 269 Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 + L G+ I + L VG++ ++I Sbjct: 270 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 309 >gi|157154771|ref|YP_001464198.1| type III secretion apparatus protein EpaO2 [Escherichia coli E24377A] gi|300820662|ref|ZP_07100813.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 119-7] gi|309793923|ref|ZP_07688348.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 145-7] gi|157076801|gb|ABV16509.1| type III secretion apparatus protein EpaO2 [Escherichia coli E24377A] gi|300526926|gb|EFK47995.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 119-7] gi|308122330|gb|EFO59592.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 145-7] Length = 190 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 30/94 (31%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L ++ L ++I L + Sbjct: 96 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIK 155 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 156 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 189 >gi|973297|gb|AAC43959.1| SpaO [Salmonella enterica] gi|975742|gb|AAC43836.1| SpaO [Salmonella enterica] Length = 303 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E ++E L V ++ + K TL ++ + Q++ + Sbjct: 209 QHIEEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I + ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298 >gi|975746|gb|AAC43839.1| SpaO [Salmonella enterica] gi|975750|gb|AAC43842.1| SpaO [Salmonella enterica] Length = 303 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E ++E L V ++ + K TL ++ + Q++ + Sbjct: 209 QHIEEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I + ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298 >gi|83747859|ref|ZP_00944892.1| HrcQ [Ralstonia solanacearum UW551] gi|83725506|gb|EAP72651.1| HrcQ [Ralstonia solanacearum UW551] Length = 355 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 QL V + + + L ++ L+ V+ + + L +G+ + +L VG Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 338 Query: 294 KNYTIRI 300 + ++I Sbjct: 339 EQLGLQI 345 >gi|300697462|ref|YP_003748123.1| type III secretion system apparatus protein HrcQ [Ralstonia solanacearum CFBP2957] gi|299074186|emb|CBJ53731.1| type III secretion system apparatus protein HrcQ [Ralstonia solanacearum CFBP2957] Length = 355 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 QL V + + + L ++ L+ V+ + + L +G+ + +L VG Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338 Query: 294 KNYTIRI 300 + ++I Sbjct: 339 EQLGLQI 345 >gi|254465587|ref|ZP_05078998.1| Surface presentation of antigens protein [Rhodobacterales bacterium Y4I] gi|206686495|gb|EDZ46977.1| Surface presentation of antigens protein [Rhodobacterales bacterium Y4I] Length = 98 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302 + ++D+V+L ++ R + L + + +L G +R+T+ Sbjct: 30 GKARPLIRDLVSLGENAILTLDKRVEDPVDLYVGDRLVARGQLEELEGEQAGQLAVRLTE 89 Query: 303 R 303 Sbjct: 90 I 90 >gi|170018890|ref|YP_001723844.1| surface presentation of antigens protein SpaO [Escherichia coli ATCC 8739] gi|169753818|gb|ACA76517.1| type III secretion system apparatus protein YscQ/HrcQ [Escherichia coli ATCC 8739] gi|323941616|gb|EGB37796.1| YscQ/HrcQ family protein type III secretion lipoprotein [Escherichia coli E482] Length = 315 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 27/84 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L ++ L ++I L + Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + NG EL V + I Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304 >gi|157162321|ref|YP_001459639.1| surface presentation of antigens protein SpaO [Escherichia coli HS] gi|157068001|gb|ABV07256.1| type III secretion apparatus protein EpaO [Escherichia coli HS] Length = 315 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 27/84 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L ++ L ++I L + Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + NG EL V + I Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304 >gi|62181393|ref|YP_217810.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129026|gb|AAX66729.1| surface presentation of antigens; secretory proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715877|gb|EFZ07448.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 303 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|207739217|ref|YP_002257610.1| hrp protein hrcq [Ralstonia solanacearum IPO1609] gi|206592590|emb|CAQ59496.1| hrp conserved protein hrcq [Ralstonia solanacearum IPO1609] Length = 362 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 QL V + + + L ++ L+ V+ + + L +G+ + +L VG Sbjct: 286 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 345 Query: 294 KNYTIRI 300 + ++I Sbjct: 346 EQLGLQI 352 >gi|188574346|ref|YP_001911275.1| type III secretion apparatus protein, YscQ/HrcQ family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518798|gb|ACD56743.1| type III secretion apparatus protein, YscQ/HrcQ family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 273 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 S + Q+ + +L + + ++ +L + L+ GQ+ Sbjct: 169 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 225 Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 + L G+ I + L VG++ ++I Sbjct: 226 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 265 >gi|168235931|ref|ZP_02660989.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738216|ref|YP_002115843.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713718|gb|ACF92939.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290676|gb|EDY30030.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 303 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ T+ Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|188496341|ref|ZP_03003611.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli 53638] gi|188491540|gb|EDU66643.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli 53638] Length = 315 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 27/84 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L ++ L ++I L + Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + NG EL V + I Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304 >gi|32454377|gb|AAP82990.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 303 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLVGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|253688596|ref|YP_003017786.1| type III secretion system apparatus protein YscQ/HrcQ [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755174|gb|ACT13250.1| type III secretion system apparatus protein YscQ/HrcQ [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 386 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 7/119 (5%) Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +T S +P S + E + D L V + Sbjct: 246 TFTITDMETVS-----MPSSATDTMFADPHSEASAFEFTQK--SDNVTESLPPLPVTLHL 298 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 R TL ++ L G V+ A L + S +L V ++IT R Sbjct: 299 RCGSLTMTLTELQHLASGSVLTLRDVVPGQAWLYYGDIALASGDLVDVEGRLGLQITQR 357 >gi|323530324|ref|YP_004232476.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. CCGE1001] gi|323387326|gb|ADX59416.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. CCGE1001] Length = 454 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 +L++ + ++ L + L+ G V+ L +G+ I EL VG Sbjct: 377 IGELDLPVQFEVDTVALPLSQLYALRPGYVLELPTPVAEAQLKLVTHGQTIGYGELVTVG 436 Query: 294 KNYTIRITDRINFD 307 + IRI + D Sbjct: 437 DHLGIRILRMAHGD 450 >gi|168820412|ref|ZP_02832412.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342820|gb|EDZ29584.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087296|emb|CBY97061.1| Surface presentation of antigens protein spaO [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 303 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|32454381|gb|AAP82992.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 303 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|307725659|ref|YP_003908872.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. CCGE1003] gi|307586184|gb|ADN59581.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. CCGE1003] Length = 511 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRV 292 + +L++ + ++ L + L+ G V+ L +G+ I EL V Sbjct: 433 EIGELDLPVQFEVDTVALPLSQLYALRPGYVLELPTPVAEAQLKLVTHGQTIGYGELVTV 492 Query: 293 GKNYTIRITDRINFD 307 G + IRI + D Sbjct: 493 GDHLGIRILRMAHGD 507 >gi|204928363|ref|ZP_03219563.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322685|gb|EDZ07882.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322614291|gb|EFY11222.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621645|gb|EFY18498.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624506|gb|EFY21339.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628837|gb|EFY25620.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633436|gb|EFY30178.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635988|gb|EFY32696.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639696|gb|EFY36381.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646879|gb|EFY43382.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650647|gb|EFY47052.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654740|gb|EFY51059.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658961|gb|EFY55214.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664472|gb|EFY60666.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668279|gb|EFY64436.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673741|gb|EFY69842.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677802|gb|EFY73865.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681368|gb|EFY77400.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683770|gb|EFY79780.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193841|gb|EFZ79044.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200311|gb|EFZ85393.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203186|gb|EFZ88215.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205567|gb|EFZ90532.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210078|gb|EFZ94981.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216381|gb|EGA01108.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221128|gb|EGA05559.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226950|gb|EGA11132.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230766|gb|EGA14884.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234883|gb|EGA18969.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238922|gb|EGA22972.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241622|gb|EGA25653.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248231|gb|EGA32167.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251185|gb|EGA35058.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256069|gb|EGA39807.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263204|gb|EGA46742.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264293|gb|EGA47799.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271119|gb|EGA54547.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 303 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ T+ Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|194442226|ref|YP_002042132.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198245837|ref|YP_002216860.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353834|ref|YP_002227635.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858153|ref|YP_002244804.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|60415909|sp|P0A1K7|SPAO_SALDU RecName: Full=Surface presentation of antigens protein SpaO gi|60415910|sp|P0A1K8|SPAO_SALEN RecName: Full=Surface presentation of antigens protein SpaO gi|973257|gb|AAC43935.1| SpaO [Salmonella enterica subsp. enterica serovar Dublin] gi|973265|gb|AAC43962.1| SpaO [Salmonella enterica subsp. enterica serovar Gallinarum] gi|975778|gb|AAC43854.1| SpaO [Salmonella enterica subsp. enterica serovar Enteritidis] gi|194400889|gb|ACF61111.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197940353|gb|ACH77686.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273615|emb|CAR38602.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206709956|emb|CAR34310.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326628943|gb|EGE35286.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 303 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|300906598|ref|ZP_07124289.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 84-1] gi|301303010|ref|ZP_07209137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 124-1] gi|300401637|gb|EFJ85175.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 84-1] gi|300841674|gb|EFK69434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 124-1] gi|315256735|gb|EFU36703.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 85-1] Length = 315 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 27/84 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L ++ L ++I L + Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIE 280 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + NG EL V + I Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304 >gi|973293|gb|AAC43956.1| SpaO [Salmonella enterica] Length = 303 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 35/90 (38%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E + QL V ++ + K TL ++ + Q++ + Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I + ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298 >gi|975762|gb|AAC43851.1| SpaO [Salmonella enterica] Length = 303 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 35/90 (38%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E + QL V ++ + K TL ++ + Q++ + Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I + ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298 >gi|161615803|ref|YP_001589768.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168261986|ref|ZP_02683959.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|161365167|gb|ABX68935.1| hypothetical protein SPAB_03594 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205349239|gb|EDZ35870.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 303 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|16766197|ref|NP_461812.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167550260|ref|ZP_02344017.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993126|ref|ZP_02574221.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230961|ref|ZP_02656019.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471466|ref|ZP_03077450.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197264022|ref|ZP_03164096.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|730795|sp|P40699|SPAO_SALTY RecName: Full=Surface presentation of antigens protein SpaO gi|404290|emb|CAA51924.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium] gi|973261|gb|AAC43965.1| SpaO [Salmonella enterica subsp. enterica serovar Senftenberg] gi|975774|gb|AAC43863.1| SpaO [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421439|gb|AAL21771.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194457830|gb|EDX46669.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197242277|gb|EDY24897.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205324834|gb|EDZ12673.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328724|gb|EDZ15488.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334615|gb|EDZ21379.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|261248027|emb|CBG25860.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995019|gb|ACY89904.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159450|emb|CBW18968.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913909|dbj|BAJ37883.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223440|gb|EFX48506.1| Surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131243|gb|ADX18673.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989763|gb|AEF08746.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 303 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|218988951|gb|ACL13614.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. salamae serovar Sofia] Length = 303 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 35/90 (38%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E + QL V ++ + K TL ++ + Q++ + Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I + ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298 >gi|973285|gb|AAC43950.1| SpaO [Salmonella enterica] gi|973289|gb|AAC43953.1| SpaO [Salmonella enterica] Length = 303 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 35/90 (38%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q+ E + QL V ++ + K TL ++ + Q++ + Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG + + EL ++ + I + ++ Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298 >gi|326624622|gb|EGE30967.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 261 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 185 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 244 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 245 TLGVEIHEWLSE 256 >gi|168242628|ref|ZP_02667560.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168463974|ref|ZP_02697891.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194450652|ref|YP_002046851.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200389219|ref|ZP_03215831.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238909658|ref|ZP_04653495.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194408956|gb|ACF69175.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633160|gb|EDX51574.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199606317|gb|EDZ04862.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205338000|gb|EDZ24764.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 303 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|197247897|ref|YP_002147788.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211600|gb|ACH48997.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 303 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|56414843|ref|YP_151918.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363771|ref|YP_002143408.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|32454369|gb|AAP82986.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454371|gb|AAP82987.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454379|gb|AAP82991.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|56129100|gb|AAV78606.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|189490720|gb|ACE00521.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267491|gb|ACF35726.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267493|gb|ACF35727.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267495|gb|ACF35728.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267497|gb|ACF35729.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267499|gb|ACF35730.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267501|gb|ACF35731.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267503|gb|ACF35732.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267505|gb|ACF35733.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267507|gb|ACF35734.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267509|gb|ACF35735.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267511|gb|ACF35736.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267513|gb|ACF35737.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267515|gb|ACF35738.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267517|gb|ACF35739.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267519|gb|ACF35740.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267521|gb|ACF35741.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267523|gb|ACF35742.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267525|gb|ACF35743.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267527|gb|ACF35744.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267529|gb|ACF35745.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267531|gb|ACF35746.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267533|gb|ACF35747.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267535|gb|ACF35748.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267537|gb|ACF35749.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267539|gb|ACF35750.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267541|gb|ACF35751.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267543|gb|ACF35752.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267545|gb|ACF35753.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|197095248|emb|CAR60799.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 303 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|293449186|ref|ZP_06663607.1| type III secretion protein SctQ [Escherichia coli B088] gi|291322276|gb|EFE61705.1| type III secretion protein SctQ [Escherichia coli B088] gi|323183416|gb|EFZ68813.1| surface presentation of antigens family protein [Escherichia coli 1357] Length = 173 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + +L V I+ + K L ++ L ++I L + Sbjct: 79 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 138 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172 >gi|94496751|ref|ZP_01303326.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58] gi|94423764|gb|EAT08790.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58] Length = 93 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V + ++ L + ++ G V+P + A G+ I + ++ VG +Y + Sbjct: 25 VQLRFELDQTDVPLSRLQAVQQGGVLPLQDRDGALPVRIIAGGRAIAAGQIVSVGDSYGV 84 Query: 299 RITDRINF 306 I + Sbjct: 85 LIETVLKE 92 >gi|329942356|ref|ZP_08291166.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10] gi|332286998|ref|YP_004421899.1| secretion and cellular translocation protein Q [Chlamydophila psittaci 6BC] gi|313847595|emb|CBY16583.1| possible flagellar or type III secretion protein [Chlamydophila psittaci RD1] gi|325507164|gb|ADZ18802.1| secretion and cellular translocation protein Q [Chlamydophila psittaci 6BC] gi|328815266|gb|EGF85254.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10] gi|328914228|gb|AEB55061.1| type III secretion translocase SctQ [Chlamydophila psittaci 6BC] Length = 371 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 5/76 (6%) Query: 233 RKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSC 287 + + + T+++ + L G ++ L NG ++ Sbjct: 296 EALPAAPLPGNYKLVAEASRYSLTVEEFLNLSQGSILNLNGIHPSRGVDLVLNGAKVGRG 355 Query: 288 ELGRVGKNYTIRITDR 303 E+ +G IR+ + Sbjct: 356 EIVSLGDVLGIRVLEV 371 >gi|183600579|ref|ZP_02962072.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827] gi|188019856|gb|EDU57896.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827] Length = 308 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 4/71 (5%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL---GR 291 + + + + + TL ++ ++ G V ++ + AN + I EL G Sbjct: 230 VNAMTIKLTFVLGQTEITLNELADIQPGAVYSIGENKEREVKVYANKQLIAEGELIYIGE 289 Query: 292 VGKNYTIRITD 302 + + IT Sbjct: 290 SDE-LGLEITR 299 >gi|300815708|ref|ZP_07095932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 107-1] gi|300531637|gb|EFK52699.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 107-1] Length = 173 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + +L V I+ + K L ++ L ++I L + Sbjct: 79 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 138 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172 >gi|16761668|ref|NP_457285.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143152|ref|NP_806494.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052435|ref|ZP_03345313.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419312|ref|ZP_03352378.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425707|ref|ZP_03358457.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580301|ref|ZP_03362127.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213649909|ref|ZP_03379962.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853009|ref|ZP_03382541.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829393|ref|ZP_06547005.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|2494557|sp|Q56022|SPAO_SALTI RecName: Full=Surface presentation of antigens protein SpaO gi|25354379|pir||AG0851 surface presentation of antigens protein (associated with type III secretion and virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|975770|gb|AAC43860.1| SpaO [Salmonella enterica subsp. enterica serovar Typhi] gi|16503969|emb|CAD05998.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138785|gb|AAO70354.1| antigen presentation protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|32454373|gb|AAP82988.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454375|gb|AAP82989.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454383|gb|AAP82993.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 303 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|284007399|emb|CBA72809.1| type III secretion apparatus protein YscQ,HrcQ,SpaO [Arsenophonus nasoniae] Length = 292 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 30/73 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + ++ + +K L ++ + G+V+P + + ANG I + + Sbjct: 220 DDIPITLEYILQKRKIPLLELENIFQGKVLPCDLAAENNVKIVANGVLIAKGNIIWIEDR 279 Query: 296 YTIRITDRINFDQ 308 + IT + ++ Sbjct: 280 LGVEITHLFHNEK 292 >gi|85058546|ref|YP_454248.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] gi|84779066|dbj|BAE73843.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] Length = 304 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GK 294 ++ V ++ + L ++ L+ G V + + N + + EL + + Sbjct: 227 SRVPVTVEFVLEANSYPLAELDNLQPGTVFDLSENVEKNIKIFLNQQLVGHGELVTLEDE 286 Query: 295 NYTIRIT 301 + IT Sbjct: 287 RLAVEIT 293 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 10/90 (11%) Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 L +P E L+ + + + + + D+V Sbjct: 116 LALPGEDLIVHVADWPKQAFPQAQTASAWLKRL-------PFELRCVLGCSRLAALDLVR 168 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCE 288 L G ++ L+ NG+ I+SC Sbjct: 169 LDTGDLLLITRP---ELHLAVNGRAIFSCH 195 >gi|227114169|ref|ZP_03827825.1| type III secretion protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 385 Score = 46.9 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 26/79 (32%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 D L V + R TL ++ L G V+ A L + S Sbjct: 287 RDNVTESLPPLPVTLHLRCGSLTMTLAELQHLASGSVLTLRDVVPGQAWLYHGDIALASG 346 Query: 288 ELGRVGKNYTIRITDRINF 306 +L V ++IT R + Sbjct: 347 DLVDVEGRLGLQITQRFSS 365 >gi|126738562|ref|ZP_01754267.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6] gi|126720361|gb|EBA17067.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6] Length = 98 Score = 46.9 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302 + ++D+V L ++ R + L + + +L G +R+T+ Sbjct: 30 GKARPLIRDLVGLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMDGEQAGQLAVRLTE 89 Query: 303 R 303 Sbjct: 90 I 90 >gi|84785904|gb|ABC62091.1| secretion and cellular translocation protein Q [Chlamydophila psittaci] Length = 371 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 5/76 (6%) Query: 233 RKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSC 287 + + + T+++ + L G ++ L NG ++ Sbjct: 296 EALPAAPLPGNYKLVAEASRYSLTVEEFLNLSQGSILNLNGIHPSRGVDLVLNGAKVGRG 355 Query: 288 ELGRVGKNYTIRITDR 303 E+ +G IR+ + Sbjct: 356 EIVSLGDVLGIRVLEV 371 >gi|85059282|ref|YP_454984.1| type III secretion system protein [Sodalis glossinidius str. 'morsitans'] gi|84779802|dbj|BAE74579.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 350 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + + T+ D+ L +G V+P R AIL + + I EL Sbjct: 269 LNALPQQVRVDVGELSLTVGDLRRLAVGDVVPVTGRFTPYAILRLHNQTIGQGELVSCDG 328 Query: 295 NYTIRITD 302 +RIT Sbjct: 329 ALLVRITR 336 >gi|254255056|ref|ZP_04948373.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia dolosa AUO158] gi|124899701|gb|EAY71544.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia dolosa AUO158] Length = 311 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 25/75 (33%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + ID ++ T++ DV G +P + ++ G + EL + Sbjct: 236 VSDLPIRIDFVLHRCTTSVSDVDAFAHGTFLPLAADAERRVEITTGGTVLAVGELVELDG 295 Query: 295 NYTIRITDRINFDQK 309 + I + Sbjct: 296 RLGVEIHQVARARRD 310 >gi|159045806|ref|YP_001534600.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12] gi|157913566|gb|ABV94999.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12] Length = 89 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + T+++++ L+ V+ R + L I L Sbjct: 12 LVGVPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARGVLEEDAD 71 Query: 295 --NYTIRITDRINFDQ 308 ++R+T+ I+ ++ Sbjct: 72 SHRLSVRLTEVISPER 87 >gi|94987608|ref|YP_595541.1| putative translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] gi|94731857|emb|CAJ55220.1| putative translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] Length = 368 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 26/70 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L++ + + + T++++ L G + L NGK I L + Sbjct: 298 VSGLDLPVVFELERQFMTVQNIGLLAPGYTFALSVDVQAPVTLRVNGKAIGVGRLVDLNG 357 Query: 295 NYTIRITDRI 304 + +++ + Sbjct: 358 SLGVQVVQVM 367 >gi|153215435|ref|ZP_01950019.1| conserved domain protein [Vibrio cholerae 1587] gi|153827945|ref|ZP_01980612.1| conserved domain protein [Vibrio cholerae 623-39] gi|124114729|gb|EAY33549.1| conserved domain protein [Vibrio cholerae 1587] gi|148876526|gb|EDL74661.1| conserved domain protein [Vibrio cholerae 623-39] Length = 71 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 30/66 (45%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + ID I TL +++ L+ G ++ ++ +L + + I + L ++ + Sbjct: 1 MKIAIDVVIAHCSMTLDELLHLQKGNMVKVEDFVQSAVMLKSGNELIATGTLIKIDDQFA 60 Query: 298 IRITDR 303 + I + Sbjct: 61 VSIDNV 66 >gi|300898066|ref|ZP_07116434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 198-1] gi|300358204|gb|EFJ74074.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 198-1] Length = 239 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L V I+ + K L ++ L ++I L + + NG EL V Sbjct: 164 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 223 Query: 296 YTIRITDRINFDQKS 310 + I ++ + Sbjct: 224 LGVEIHSWLSGNNNV 238 >gi|320202507|gb|EFW77077.1| surface presentation of antigens protein SpaO [Escherichia coli EC4100B] Length = 173 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + +L V I+ + K L ++ L ++I L + Sbjct: 79 KKNESEIYDENDEQMIHSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 138 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172 >gi|51103201|gb|AAT96342.1| HrcQ-like protein [Pseudomonas viridiflava] Length = 354 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L + + S +++ + F L++ + R +L + +L +G V+ Sbjct: 257 LDDIDEHDSAHEADSAEANDNDLQRFN----DLSMALTVRAGNLSLSLGQLRSLAVGSVL 312 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 F A+L + + EL V ++IT Sbjct: 313 TFNGCTPGHAMLHHGERVLAHGELVDVEGRLGLQITRM 350 >gi|301027455|ref|ZP_07190792.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 69-1] gi|300394963|gb|EFJ78501.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 69-1] Length = 315 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 4/100 (4%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 I S ++ I+ F L V I+ + K L ++ L ++I L Sbjct: 219 DIKKSESEINDENDYQQINSFE----DLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPE 274 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NG EL V + I ++ + Sbjct: 275 AEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 314 >gi|238786391|ref|ZP_04630319.1| Type III secretion system apparatus protein [Yersinia bercovieri ATCC 43970] gi|238712699|gb|EEQ04783.1| Type III secretion system apparatus protein [Yersinia bercovieri ATCC 43970] Length = 305 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + I L ++ L +GQ + + NG+ + S L R G+ Sbjct: 235 LDHLPQTLVMEIGRIAVPLGEIKQLAVGQTLNCQTSVYGEVNIRLNGQPVGSGSLLRCGE 294 Query: 295 NYTIRITD 302 + +RI Sbjct: 295 DLVVRIDQ 302 >gi|153847524|ref|ZP_01993940.1| acetolactate synthase II large subunit [Vibrio parahaemolyticus AQ3810] gi|149744726|gb|EDM56194.1| acetolactate synthase II large subunit [Vibrio parahaemolyticus AQ3810] Length = 237 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 32/180 (17%) Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL--NQCISTTQESS 157 ++ L + GA+ E L+ + +L +R I L E Sbjct: 7 DTQTLVKLADRFYGANTERSVAT----LTASDLRLQERISRIIIGWLAPQDMWEA-CEYE 61 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 + +N+T E S L + + Sbjct: 62 ------------------APRGIGLCVQLNITFEGYQGSMYLKLDTHLIQTLIEQL---- 99 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAI 276 DL +PF R V ++ ++ K L DVV+LK ++P Sbjct: 100 --ELQSDVDLYEPFCRSLESTPVRLNVVLSKKTMALSDVVSLKPDDIMPIYDALYDGGVE 157 >gi|120586839|ref|YP_961184.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564253|gb|ABM29996.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris DP4] Length = 475 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 2/96 (2%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQL--NVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + + S+ V+I + + L D+ L G Sbjct: 317 VLDATPAPNTPESPMSDQQTPEVPAGLDTAALEVDIVFELERRTMKLNDLAALAPGYTFA 376 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L G+ I L + +++ Sbjct: 377 LGTDPLAPVTLRVQGRNIGRGRLVDLDGTPGVQVLH 412 >gi|284922804|emb|CBG35892.1| type III secretion system protein [Escherichia coli 042] Length = 315 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 4/100 (4%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 I S ++ I+ F L V I+ + K L ++ L ++I L Sbjct: 219 DIKKSESEINDENDYQQINSFE----DLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPE 274 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NG EL V + I ++ + Sbjct: 275 AEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 314 >gi|325261315|ref|ZP_08128053.1| chemotaxis protein CheC, inhibitor of MCP methylation [Clostridium sp. D5] gi|324032769|gb|EGB94046.1| chemotaxis protein CheC, inhibitor of MCP methylation [Clostridium sp. D5] Length = 203 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 42/160 (26%), Gaps = 9/160 (5%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK----ENFVFSQASL 88 I S LG + M+ ++I + + ++ + S Sbjct: 13 DILSELGNIGTGNAVSSLSAMMERPIEIGIPNIRLVRYQDVFESLGIQEALQTGILIQVK 72 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 F +L+ +LG + + L +EK L + + Sbjct: 73 GQLQGMFLFLMDEAFTWAVLKTMLGGADHCLT-----CLDEMEKSLLSELGNIMCGSYIR 127 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 ++ ++ + + ++ ++ Sbjct: 128 ALAQLTGMETDVSVPDMCIDMGGAILGVPLARHLKVSDSI 167 >gi|110677671|ref|YP_680678.1| flagellar motor switch protein FliN, putative [Roseobacter denitrificans OCh 114] gi|109453787|gb|ABG29992.1| flagellar motor switch protein FliN, putative [Roseobacter denitrificans OCh 114] Length = 97 Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 4/72 (5%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG---- 293 + + + + + ++D+VTL V+ + L + I L Sbjct: 21 VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVEDPVDLYIGDRLIARGMLEEKDDDQS 80 Query: 294 KNYTIRITDRIN 305 +R+T+ I+ Sbjct: 81 GQLIVRLTEVID 92 >gi|330809245|ref|YP_004353707.1| flagellar motor switch protein FliM-like protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377353|gb|AEA68703.1| Putative flagellar motor switch protein FliM-like protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 243 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 1/70 (1%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELG 290 + V + R+ L ++ ++ L+ G + + A G I L Sbjct: 170 KQALGNARVKLSVRLPLASLSIGEMRDLRPGDTLRASALLADPVSVQLAEGPVIAGGYLA 229 Query: 291 RVGKNYTIRI 300 + +++ Sbjct: 230 KQHGQVAVQL 239 >gi|229827373|ref|ZP_04453442.1| hypothetical protein GCWU000182_02761 [Abiotrophia defectiva ATCC 49176] gi|229788311|gb|EEP24425.1| hypothetical protein GCWU000182_02761 [Abiotrophia defectiva ATCC 49176] Length = 208 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 35/150 (23%), Gaps = 6/150 (4%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL---- 88 + LG + ++ VD++ F + L Sbjct: 15 DVLRELGNIGAGNATTALSSMLNTKVDMNVPKVDLLGFDELHEIMGGAETIVVGILVTLD 74 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + L++ L G T P+ L + K IS Sbjct: 75 ADIDGMMMFMMKTKSAFGLVDILFGRPVGTTPEDA--ELDEMSLSALKELGNIISGAYIS 132 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 +S+ + N Y + + Sbjct: 133 SLSSMTNLTINQSIPYLSIDMAGAILSVPA 162 >gi|329850252|ref|ZP_08265097.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum C19] gi|328840567|gb|EGF90138.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum C19] Length = 71 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%) Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ++ ++ + G VIP RE + AN + E+ + +I +T Sbjct: 3 LGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEKISIVVTK 59 >gi|182440970|dbj|BAG24095.1| HrcQ [Pseudomonas cichorii] Length = 354 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%) Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + L + + R +L + +L +G V+ F A+L + + EL Sbjct: 279 MERFNDLALALTLRAGNLSLSLGQLRSLSVGSVLTFNGCAPGHAMLFHGERALAHGELVD 338 Query: 292 VGKNYTIRITDR 303 V ++IT Sbjct: 339 VEGRLGLQITRM 350 >gi|262274302|ref|ZP_06052113.1| putative Type III secretion protein Spa33 [Grimontia hollisae CIP 101886] gi|262220865|gb|EEY72179.1| putative Type III secretion protein Spa33 [Grimontia hollisae CIP 101886] Length = 71 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + +D I TL ++ L G+++ ++ +L + + + + L +V Y Sbjct: 1 MKIALDVVIAHCNLTLDELNQLNKGKMLKIDDFVQSEVMLKSGNELVATGRLIKVDDQYA 60 Query: 298 IRIT 301 I + Sbjct: 61 ITVD 64 >gi|324119903|gb|EGC13782.1| type III secretion protein SctQ [Escherichia coli E1167] Length = 134 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + +L V I+ + K L ++ L ++I L + Sbjct: 40 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 99 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 100 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 133 >gi|51103118|gb|AAT96261.1| HrcQ-like protein [Pseudomonas viridiflava] gi|51103160|gb|AAT96302.1| HrcQ-like protein [Pseudomonas viridiflava] Length = 354 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ L++ + R +L + +L +G V+ F A+L + + EL V Sbjct: 280 QRFNDLSMALTVRAGNLSLSLGQLRSLAVGSVLTFNGCTPGHAMLHHGERVLAHGELVDV 339 Query: 293 GKNYTIRITDR 303 ++IT Sbjct: 340 EGRLGLQITRM 350 >gi|289810465|ref|ZP_06541094.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 223 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 147 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMND 206 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 207 TLGVEIHEWLSE 218 >gi|293412213|ref|ZP_06654936.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B354] gi|291468984|gb|EFF11475.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B354] Length = 315 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L V I+ + K L ++ L ++I L + + NG EL V Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299 Query: 296 YTIRITDRINFDQKS 310 + I ++ + Sbjct: 300 LGVEIHSWLSGNNNV 314 >gi|330957489|gb|EGH57749.1| type III secretion protein HrcQb [Pseudomonas syringae pv. maculicola str. ES4326] Length = 135 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 1/100 (1%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFAR-KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + + + E + L + + R + TL ++ L G V+ Sbjct: 35 PDDEYAEQASGYAPADDERQDEQDESPALDSLELELTLRCGELRLTLAELRRLDAGSVLE 94 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 A L + + EL V ++IT + Sbjct: 95 VSGVAPGHATLCHGEQVVAEGELVDVEGRLGLQITRLVTR 134 >gi|218706363|ref|YP_002413882.1| surface presentation of antigens protein SpaO [Escherichia coli UMN026] gi|298382090|ref|ZP_06991687.1| type III secretion inner membrane protein [Escherichia coli FVEC1302] gi|331674343|ref|ZP_08375103.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli TA280] gi|218433460|emb|CAR14362.1| Type III secretion apparatus protein [Escherichia coli UMN026] gi|298277230|gb|EFI18746.1| type III secretion inner membrane protein [Escherichia coli FVEC1302] gi|331068437|gb|EGI39832.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli TA280] Length = 315 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L V I+ + K L ++ L ++I L + + NG EL V Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299 Query: 296 YTIRITDRINFDQKS 310 + I ++ + Sbjct: 300 LGVEIHSWLSGNNNV 314 >gi|188534037|ref|YP_001907834.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] gi|188029079|emb|CAO96947.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 309 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 4/118 (3%) Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRI 246 I++ + + + +L ED K L+V I+ + Sbjct: 177 IQHQSGYLQIGSKKIFILDFVDKKEIVVLDKLTDYEDHYRDEEEKLFSWSDLSVEIEFVL 236 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG-KNYTIRITDR 303 + K TL ++ + G ++P + + N K EL + N + I Sbjct: 237 DSKSYTLTELDAIHPGMILPLNQDAEKRVKIYLNKKFFARGELVALESGNLAVEINQI 294 >gi|975766|gb|AAC43857.1| SpaO [Salmonella enterica subsp. enterica serovar Typhisuis] Length = 303 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEVMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRITDRINF 306 + I + ++ Sbjct: 287 TLGVEIHEWLSE 298 >gi|331678848|ref|ZP_08379522.1| typeIII secretion apparatus protein [Escherichia coli H591] gi|331073678|gb|EGI44999.1| typeIII secretion apparatus protein [Escherichia coli H591] Length = 134 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 30/94 (31%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L ++ L ++I L + Sbjct: 40 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIK 99 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 100 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 133 >gi|62184686|ref|YP_219471.1| type III secretion system protein [Chlamydophila abortus S26/3] gi|62147753|emb|CAH63497.1| possible flagellar or type III secretion protein [Chlamydophila abortus S26/3] Length = 371 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 5/76 (6%) Query: 233 RKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSC 287 + + + T+++ + L G ++ L NG ++ Sbjct: 296 EALPAAPLPGNYKLVAEASRYSLTVEEFLHLSQGSILNLNGIHPSRGVDLILNGAKVGRG 355 Query: 288 ELGRVGKNYTIRITDR 303 E+ +G IR+ + Sbjct: 356 EIVSLGDVLGIRVLEV 371 >gi|15042141|gb|AAK81922.1|AF292566_6 RscQB [Pseudomonas fluorescens] Length = 133 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 3/119 (2%) Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + MT+ A + I + + + E ++ + ++ R Sbjct: 15 LTMTVGRCALTLTSIEETSVDEEFIAPHYAGEEDDEPVTDVFGHEPFDELSMA---LNVR 71 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 TL ++ L G V+ A L + I +L V ++++ + Sbjct: 72 CGTLNLTLGELRNLAPGAVLGIAGYAPGMAGLYYGDRPIGQGQLVEVDGRLGLQLSRVM 130 >gi|323978517|gb|EGB73599.1| YscQ/HrcQ family protein type III secretion lipoprotein [Escherichia coli TW10509] Length = 315 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L V I+ + K L ++ L ++I L + + NG EL V Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299 Query: 296 YTIRITDRINFDQKS 310 + I ++ + Sbjct: 300 LGVEIHSWLSGNNNV 314 >gi|167573309|ref|ZP_02366183.1| type III secretion system protein BsaV [Burkholderia oklahomensis C6786] Length = 320 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ + ++ T+ + + G V+P + ANG+ EL +VG+ Sbjct: 242 IDALPVTLEFVLQDERVTVAQLASCHPGLVLPVRGAPGE-VTIRANGRPFGCGELIQVGE 300 Query: 295 NYTIRIT 301 + + Sbjct: 301 QLAVEVK 307 >gi|323966656|gb|EGB62088.1| YscQ/HrcQ family protein type III secretion lipoprotein [Escherichia coli M863] gi|327251617|gb|EGE63303.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli STEC_7v] Length = 315 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L V I+ + K L ++ L ++I L + + NG EL V Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299 Query: 296 YTIRITDRINFDQKS 310 + I ++ + Sbjct: 300 LGVEIHSWLSGNNNV 314 >gi|331669597|ref|ZP_08370443.1| typeIII secretion apparatus protein [Escherichia coli TA271] gi|331063265|gb|EGI35178.1| typeIII secretion apparatus protein [Escherichia coli TA271] Length = 113 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + +L V I+ + K L ++ L ++I L + Sbjct: 19 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPESEKNIE 78 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 79 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 112 >gi|51103053|gb|AAT96199.1| HrcQb [Pseudomonas viridiflava] Length = 186 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 2/91 (2%) Query: 218 NKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + SE ++ L +++ R TL + L G ++ A Sbjct: 95 HNSETADDEQSQAVTEPAAFESLTLDLTLRCGELTLTLAALRRLDAGTILEVAGIAPGHA 154 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L + + EL V ++IT + Sbjct: 155 TLCHGERVVAEGELVDVDGRLGLQITRMVTQ 185 >gi|167566199|ref|ZP_02359115.1| type III secretion system protein BsaV [Burkholderia oklahomensis EO147] Length = 326 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V ++ + ++ T+ + + G V+P + ANG+ EL +VG+ Sbjct: 248 IDALPVTLEFVLQDERVTVAQLASCHPGLVLPVRGAPGE-VTIRANGRPFGCGELIQVGE 306 Query: 295 NYTIRIT 301 + + Sbjct: 307 QLAVEVK 313 >gi|293406355|ref|ZP_06650281.1| type III secretion inner membrane protein [Escherichia coli FVEC1412] gi|291426361|gb|EFE99393.1| type III secretion inner membrane protein [Escherichia coli FVEC1412] Length = 308 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L V I+ + K L ++ L ++I L + + NG EL V Sbjct: 233 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 292 Query: 296 YTIRITDRINFDQKS 310 + I ++ + Sbjct: 293 LGVEIHSWLSGNNNV 307 >gi|218674848|ref|ZP_03524517.1| type III secretion system translocation protein [Rhizobium etli GR56] gi|327192840|gb|EGE59766.1| type III secretion system translocation protein [Rhizobium etli CNPAF512] Length = 339 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + L+ + T+ G V + A G+ I E+ V Sbjct: 269 VDSIPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDG 328 Query: 295 NYTIRITDRIN 305 +R+T + Sbjct: 329 LSAVRVTALHD 339 >gi|299822274|ref|ZP_07054160.1| flagellar motor switch protein [Listeria grayi DSM 20601] gi|299815803|gb|EFI83041.1| flagellar motor switch protein [Listeria grayi DSM 20601] Length = 82 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 22/67 (32%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ + ID + + +++ LK G + + G I E+ Sbjct: 5 NEIPLQIDFELGRTNQQVGNLLDLKKGTIFRLECSTANVVKIVIAGTCIGYGEILTKDGK 64 Query: 296 YTIRITD 302 ++I Sbjct: 65 LFVKIVK 71 >gi|268592376|ref|ZP_06126597.1| putative surface presentation of antigens protein [Providencia rettgeri DSM 1131] gi|291312162|gb|EFE52615.1| putative surface presentation of antigens protein [Providencia rettgeri DSM 1131] Length = 310 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 12/132 (9%) Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 E + L+ P+ Q ++N+ Sbjct: 189 VLARFQKQDEGLLMIEELVAPESEEEFVFPEEDEMQEIVRP----------FNVKEMNIK 238 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN--YTIR 299 + + T+ ++ ++ G + ++ + AN + I EL +G + + Sbjct: 239 LTFVLGHSDITVDELSKMEPGYIYSIGENKEREVKVYANKQFIAEGELIYIGNSDELGLE 298 Query: 300 ITDRINFDQKSL 311 IT ++ K + Sbjct: 299 ITHVVSLGDKRV 310 >gi|76574804|gb|ABA47278.1| HrcQ [Pseudomonas cichorii] Length = 354 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + L + + R +L + +L +G V+ F A+L + + EL V Sbjct: 280 ERFNDLALALTLRAGNLSLSLGQLRSLSVGSVLTFNGCAPGNAMLFHGERALAHGELVDV 339 Query: 293 GKNYTIRITDR 303 ++IT Sbjct: 340 EGRLGLQITRM 350 >gi|21492904|ref|NP_659979.1| type III secretion system translocation protein [Rhizobium etli CFN 42] gi|21467329|gb|AAM54992.1| type III secretion system translocation protein [Rhizobium etli CFN 42] Length = 339 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + L+ + T+ G V + A G+ I E+ V Sbjct: 269 VDSIPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDG 328 Query: 295 NYTIRITDRIN 305 +R+T + Sbjct: 329 LSAVRVTALHD 339 >gi|207724581|ref|YP_002254978.1| hrp protein hrcq [Ralstonia solanacearum MolK2] gi|206589803|emb|CAQ36764.1| hrp conserved protein hrcq [Ralstonia solanacearum MolK2] Length = 362 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293 QL V + + + L ++ L+ V+ + + L +G+ + +L VG Sbjct: 286 LEQLEVPVHLELAVMGMPLAELAALQRQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 345 Query: 294 KNYTIRI 300 + ++I Sbjct: 346 EQLGLQI 352 >gi|94968672|ref|YP_590720.1| surface presentation of antigens (SPOA) protein [Candidatus Koribacter versatilis Ellin345] gi|94550722|gb|ABF40646.1| surface presentation of antigens (SPOA) protein [Candidatus Koribacter versatilis Ellin345] Length = 109 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 4/87 (4%) Query: 220 SENQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + + + + + T++ ++ L+ G V+ + T Sbjct: 21 QNESGAKQSEDIRSEGMNSFRHLQCTVTLELPVPRFTVRQMLELRPGAVVDTCWSQATDL 80 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302 L NG + E V Y +R+T+ Sbjct: 81 PLRVNGALLAWSEFEVVDNRYGVRLTE 107 >gi|330940700|gb|EGH43711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. pisi str. 1704B] Length = 98 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 11/78 (14%) Query: 5 SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 N+ P R+ + + ++ + D Sbjct: 25 QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINEQFARYTRISMFNLLRRSAD 78 Query: 60 ISYTSCQSGKFSHIIHSF 77 ++ Q KF +HS Sbjct: 79 VAVGGVQVMKFGEYVHSL 96 >gi|307310519|ref|ZP_07590167.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|306909414|gb|EFN39909.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] Length = 113 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + +L V I+ + K L ++ L ++I L + Sbjct: 19 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 78 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 79 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 112 >gi|34500876|gb|AAQ73904.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum] Length = 379 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 25/75 (33%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 D L V + R TL ++ L G V+ + A L + S Sbjct: 281 SDNVTENLPPLPVTLHIRCGSLTMTLTELQHLASGSVLTLRDVVQGQAWLYHGDIALASG 340 Query: 288 ELGRVGKNYTIRITD 302 +L V ++IT Sbjct: 341 DLVDVEGRLGLQITQ 355 >gi|146305086|ref|YP_001185551.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] gi|145573287|gb|ABP82819.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] Length = 133 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 5/109 (4%) Query: 200 IIPQETLLKTTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRI--NLKKTTLK 254 +P+ + + L Q + E+ S A ++ + + ++ Sbjct: 21 ALPEGFEERPGEMHLEGQEFAPQDEHASAVEPQQMAALGSIAHLPLQLTLRCGQLTLSVD 80 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + L G V+ A L + + EL V ++IT Sbjct: 81 QLRQLGSGSVLEIHGVAPGHATLCHGERVVGEGELVDVDGRLGLQITRM 129 >gi|28901204|ref|NP_800859.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus RIMD 2210633] gi|153835872|ref|ZP_01988539.1| conserved domain protein [Vibrio parahaemolyticus AQ3810] gi|260362762|ref|ZP_05775631.1| conserved domain protein [Vibrio parahaemolyticus K5030] gi|260880050|ref|ZP_05892405.1| conserved domain protein [Vibrio parahaemolyticus AN-5034] gi|260895167|ref|ZP_05903663.1| conserved domain protein [Vibrio parahaemolyticus Peru-466] gi|28809717|dbj|BAC62692.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus RIMD 2210633] gi|149750626|gb|EDM61371.1| conserved domain protein [Vibrio parahaemolyticus AQ3810] gi|308085747|gb|EFO35442.1| conserved domain protein [Vibrio parahaemolyticus Peru-466] gi|308092016|gb|EFO41711.1| conserved domain protein [Vibrio parahaemolyticus AN-5034] gi|308112219|gb|EFO49759.1| conserved domain protein [Vibrio parahaemolyticus K5030] Length = 71 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 29/61 (47%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + V +D I + +L ++ L G+++ ++ +L + + + + +L +V Y Sbjct: 1 MKVELDVVIAHCQLSLDELNQLSKGKMVKIEDFVQSQVMLKSGNELVATGQLFKVDDQYA 60 Query: 298 I 298 + Sbjct: 61 V 61 >gi|82795277|gb|ABB91646.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tagetis] Length = 135 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 6/96 (6%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 I Q++ + S L +++ R + TL ++ L G V+ Sbjct: 41 EPDEPIGPDEQDEQDEHSPL------SAVDSLPLDLTLRCGELRLTLAELRRLDAGTVLE 94 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 A L + + EL V ++IT Sbjct: 95 VSGIAPGYATLCHGERVVAEGELVDVDGRLGLQITR 130 >gi|29839806|ref|NP_828912.1| type III secretion system protein [Chlamydophila caviae GPIC] gi|29834153|gb|AAP04790.1| type III secretion translocase SctQ [Chlamydophila caviae GPIC] Length = 371 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T+++ + L G V+ F L NG ++ E+ +G IR+ Sbjct: 309 LVAEASRYSLTVEEFLKLTQGSVLNFNGVHPSRGVDLILNGAKVGRGEIVSLGDVLGIRV 368 Query: 301 TDR 303 + Sbjct: 369 LEV 371 >gi|51102998|gb|AAT96145.1| HrcQb [Pseudomonas viridiflava] Length = 186 Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 2/91 (2%) Query: 218 NKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 SE ++ L +++ R TL + L G ++ A Sbjct: 95 QNSETADDEQSQAVTEPAAFESLTLDLTLRCGELTLTLAALRRLDAGTILEVAGIAPGHA 154 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L + + EL V ++IT + Sbjct: 155 TLCHGERVVAEGELVDVDGRLGLQITRMVTQ 185 >gi|188992473|ref|YP_001904483.1| HrcQ protein [Xanthomonas campestris pv. campestris str. B100] gi|167734233|emb|CAP52441.1| HrcQ protein [Xanthomonas campestris pv. campestris] Length = 335 Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 18/164 (10%), Positives = 45/164 (27%), Gaps = 10/164 (6%) Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + L + + + + + + IP +L Sbjct: 166 PAWLSALRVTTRLRIGQRTATAALLQSLRPGDVLLHALATAPV--RSGELLWGIPGGAVL 223 Query: 208 --KTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 L ++ + + A L + + ++ +L + L+ Sbjct: 224 RAPVRLTLQQMILETAPTMQHDMPASDSSSSATDVAALELPVQLEVDQLALSLSVLSGLQ 283 Query: 261 IGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 GQ++ L G+ I L VG++ ++I Sbjct: 284 PGQILELSVPVDQADIRLVVYGQTIGIGRLLAVGEHLGVQILSM 327 >gi|21230684|ref|NP_636601.1| HrcQ protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769321|ref|YP_244083.1| HrcQ protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112272|gb|AAM40525.1| HrcQ protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574653|gb|AAY50063.1| HrcQ protein [Xanthomonas campestris pv. campestris str. 8004] Length = 304 Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 18/164 (10%), Positives = 45/164 (27%), Gaps = 10/164 (6%) Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + L + + + + + + IP +L Sbjct: 135 PAWLSALRVTTRLRIGQRTATAALLQSLRPGDVLLHALATAPV--RSGELLWGIPGGAVL 192 Query: 208 --KTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 L ++ + + A L + + ++ +L + L+ Sbjct: 193 RAPVRLTLQQMILETAPTMQHDMPASDSSSSATDVAALELPVQLEVDQLALSLSVLSGLQ 252 Query: 261 IGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303 GQ++ L G+ I L VG++ ++I Sbjct: 253 PGQILELSVPVDQADIRLVVYGQTIGIGRLLAVGEHLGVQILSM 296 >gi|238764051|ref|ZP_04625006.1| Type III secretion system apparatus protein [Yersinia kristensenii ATCC 33638] gi|238697722|gb|EEP90484.1| Type III secretion system apparatus protein [Yersinia kristensenii ATCC 33638] Length = 292 Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 23/69 (33%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + QL + I L D+ L +GQ + + +G+ + S L Sbjct: 218 QLEQLPQTLIMEIGRLTLPLSDIKQLDVGQTLACQTHLYGEVNIRLHGQIVGSGSLLCCD 277 Query: 294 KNYTIRITD 302 +RI Sbjct: 278 GQMVVRIDQ 286 >gi|227357592|ref|ZP_03841945.1| type III secretion system protein [Proteus mirabilis ATCC 29906] gi|227162302|gb|EEI47306.1| type III secretion system protein [Proteus mirabilis ATCC 29906] Length = 309 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 23/70 (32%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + I + K ++ + L G+ + ANGK I EL ++ Sbjct: 234 NSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELIKI 293 Query: 293 GKNYTIRITD 302 + I Sbjct: 294 KDMLAVEINK 303 >gi|115360603|ref|YP_777740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria AMMD] gi|115285931|gb|ABI91406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria AMMD] Length = 326 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRV 292 + QL++ + I+ + + L+ G V+ L G+ I EL V Sbjct: 249 EISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSV 308 Query: 293 GKNYTIRITD 302 G + +R+ Sbjct: 309 GDHLGVRLVQ 318 >gi|197286518|ref|YP_002152390.1| type III secretion system protein [Proteus mirabilis HI4320] gi|194684005|emb|CAR45295.1| type III secretion system protein [Proteus mirabilis HI4320] Length = 309 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 23/70 (32%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + I + K ++ + L G+ + ANGK I EL ++ Sbjct: 234 NSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELIKI 293 Query: 293 GKNYTIRITD 302 + I Sbjct: 294 KDMLAVEINK 303 >gi|330444061|ref|YP_004377047.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum E58] gi|328807171|gb|AEB41344.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum E58] Length = 371 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 7/62 (11%), Positives = 22/62 (35%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + + + L G ++ + +G ++ E+ +G IR+ Sbjct: 310 LVAEVARYGLAVDEFLKLAPGSILNLGVHPSRGVDIILDGAKVGRGEILALGDVLGIRVL 369 Query: 302 DR 303 + Sbjct: 370 EV 371 >gi|254502219|ref|ZP_05114370.1| putative surface presentation of antigens protein [Labrenzia alexandrii DFL-11] gi|222438290|gb|EEE44969.1| putative surface presentation of antigens protein [Labrenzia alexandrii DFL-11] Length = 88 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++NV+I + + ++ + G VI E + AN + ++ +G+ Sbjct: 5 DEINVDISVVLGENHMPVHQLLRMGRGAVIDLDVDEDDDVKIYANNTLVAKGQVVLLGER 64 Query: 296 YTIRITDRINFDQK 309 I IT+ + + Sbjct: 65 IGISITEVLMRPPE 78 >gi|149926087|ref|ZP_01914350.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105] gi|149825375|gb|EDM84586.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105] Length = 359 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 24/67 (35%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + ++ K ++ +++ G +I L G I EL + Sbjct: 293 QIELEIHAGKTKILFNELCSVQEGTLIELREHALPMVTLCVMGSPILEGELVHFQDQLMV 352 Query: 299 RITDRIN 305 ++T R++ Sbjct: 353 QVTKRLD 359 >gi|229515157|ref|ZP_04404617.1| hypothetical protein VCB_002814 [Vibrio cholerae TMA 21] gi|229529205|ref|ZP_04418595.1| hypothetical protein VCG_002298 [Vibrio cholerae 12129(1)] gi|254285289|ref|ZP_04960254.1| conserved domain protein [Vibrio cholerae AM-19226] gi|71480614|gb|AAZ32236.1| VcsQ2 [Vibrio cholerae non-O1/non-O139] gi|150424561|gb|EDN16497.1| conserved domain protein [Vibrio cholerae AM-19226] gi|229332979|gb|EEN98465.1| hypothetical protein VCG_002298 [Vibrio cholerae 12129(1)] gi|229347862|gb|EEO12821.1| hypothetical protein VCB_002814 [Vibrio cholerae TMA 21] Length = 71 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 29/64 (45%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + V +D I +L ++ L G+++ ++ +L + + + + +L +V Y Sbjct: 1 MKVALDVVIAHCNLSLDELNQLSKGKMVKIEDFVQSQVMLKSGNELVATGQLIKVDDQYA 60 Query: 298 IRIT 301 + + Sbjct: 61 VTVD 64 >gi|51103052|gb|AAT96198.1| HrcQa [Pseudomonas viridiflava] Length = 238 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 12/90 (13%) Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235 ++ + + + + L P TLL+ ++ Q + + + Sbjct: 114 APDDASFGCRVQVRLGGESLHAHLHSPSHTLLRLLHLAPW-QARYKPVDDTW-------- 164 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 V I TL ++ +L+ G V+ Sbjct: 165 ---PVTTPLIIGELVLTLNELASLRPGDVV 191 >gi|323180306|gb|EFZ65858.1| surface presentation of antigens family protein [Escherichia coli 1180] Length = 134 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 30/86 (34%) Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ++ + +L V I+ + K L ++ L ++I L + + NG Sbjct: 48 DENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIRVNGALT 107 Query: 285 YSCELGRVGKNYTIRITDRINFDQKS 310 EL V + I ++ + Sbjct: 108 GYGELVEVDDKLGVEIHSWLSGNNNV 133 >gi|119947193|ref|YP_944873.1| hypothetical protein Ping_3591 [Psychromonas ingrahamii 37] gi|119865797|gb|ABM05274.1| hypothetical protein Ping_3591 [Psychromonas ingrahamii 37] Length = 266 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + + V + + L D+ +L IG VI A S ++ Sbjct: 188 KASIEKSLLSVEVEGYVTMMSRTLKLGDISSLNIGDVISMEMH--DHAFFSIGDTTVFRG 245 Query: 288 ELGRVGKNYTIRITDRINFDQ 308 ++ + + D+ DQ Sbjct: 246 KISTQNERLLFTVNDQQENDQ 266 >gi|190894059|ref|YP_001984353.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] gi|190699720|gb|ACE93803.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] Length = 339 Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + L+ + T+ G V + A G+ I E+ V Sbjct: 269 VDSIPIKLVFDAGRLELPLRALETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDG 328 Query: 295 NYTIRITDRIN 305 +R+T + Sbjct: 329 LSAVRVTALHD 339 >gi|254253711|ref|ZP_04947028.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia dolosa AUO158] gi|124898356|gb|EAY70199.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia dolosa AUO158] Length = 388 Score = 45.0 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRV 292 + QL++ + I+ + + L+ G V+ L G+ I EL V Sbjct: 311 EISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSV 370 Query: 293 GKNYTIRITD 302 G + +R+ Sbjct: 371 GDHLGVRLVQ 380 >gi|227328492|ref|ZP_03832516.1| type III secretion protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 297 Score = 45.0 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 23/75 (30%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 D L V + R TL + L G V+ A L + S Sbjct: 199 SDNVTENLPPLPVTLHIRCGSLTMTLAKLQHLASGSVLTLRDVVPGQAWLYHGDIALASG 258 Query: 288 ELGRVGKNYTIRITD 302 +L V ++IT Sbjct: 259 DLVDVEGRLGLQITQ 273 >gi|304414275|ref|ZP_07395643.1| type III secretion system protein [Candidatus Regiella insecticola LSR1] gi|304283489|gb|EFL91885.1| type III secretion system protein [Candidatus Regiella insecticola LSR1] Length = 329 Score = 44.6 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + I ++D+ L +GQ + + +G+++ S L R G+ Sbjct: 258 LDALEKTLVMEIGRLDMKIEDIKALSVGQTLACESSCYGEVGIRLDGQQVGSGNLVRCGE 317 Query: 295 NYTIRITD 302 +RI Sbjct: 318 ELVVRIDR 325 >gi|71388160|gb|AAZ31294.1| EpaO [Escherichia coli] Length = 315 Score = 44.6 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 26/84 (30%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ D L V I+ + K L + L ++I L + Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYETDELCAKRIISLLPESEKNIE 280 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + NG EL V + I Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304 >gi|307947531|ref|ZP_07662864.1| hypothetical protein TRICHSKD4_6282 [Roseibium sp. TrichSKD4] gi|307769349|gb|EFO28577.1| hypothetical protein TRICHSKD4_6282 [Roseibium sp. TrichSKD4] Length = 377 Score = 44.6 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + T ++V LK+G +PF E + NG++ S L I Sbjct: 311 ELMLSFVPAKLAMTDNEIVALKVGTELPFQRPENGAVEILCNGEKAGSGNLVLQDGCMGI 370 Query: 299 RITDR 303 ++ + Sbjct: 371 KVQEI 375 >gi|172064927|ref|YP_001815639.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MC40-6] gi|171997169|gb|ACB68086.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MC40-6] Length = 374 Score = 44.6 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVG 293 QL++ + I+ + + L+ G V+ L G+ I EL VG Sbjct: 298 ISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSVG 357 Query: 294 KNYTIRITD 302 + +R+ Sbjct: 358 DHLGVRLVQ 366 >gi|289663758|ref|ZP_06485339.1| HrcQ protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668180|ref|ZP_06489255.1| HrcQ protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 268 Score = 44.6 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 1/72 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291 L + + ++ L + L+ GQ++ L G+ I + L Sbjct: 189 TDVAALELPVQLEVDQLALPLSVLSGLQPGQILELSVPIDQADIRLVVYGQTIGTGRLLA 248 Query: 292 VGKNYTIRITDR 303 VG++ ++I Sbjct: 249 VGEHLGVQILSM 260 >gi|108809073|ref|YP_652989.1| flagellar motor switch protein [Yersinia pestis Antiqua] gi|108780986|gb|ABG15044.1| flagellar motor switch protein [Yersinia pestis Antiqua] Length = 126 Score = 44.6 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%) Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKD 255 F + I + + + K+ ++ L + +L V + ++++ TL + Sbjct: 13 FSIFIDAPHIDRLIDTIKTKNEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAE 72 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ LK G +I E + + ++S + Sbjct: 73 LMALKEGDIISASLPEYFP--VFIGKEALFSAAITENRGKL 111 >gi|170698359|ref|ZP_02889433.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria IOP40-10] gi|170136698|gb|EDT04952.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria IOP40-10] Length = 374 Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVG 293 QL++ + I+ + + L+ G V+ L G+ I EL VG Sbjct: 298 ISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSVG 357 Query: 294 KNYTIRITD 302 + +R+ Sbjct: 358 DHLGVRLVQ 366 >gi|332981460|ref|YP_004462901.1| MCP methylation inhibitor CheC [Mahella australiensis 50-1 BON] gi|332699138|gb|AEE96079.1| CheC, inhibitor of MCP methylation [Mahella australiensis 50-1 BON] Length = 205 Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 12/162 (7%), Positives = 44/162 (27%), Gaps = 9/162 (5%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS---HIIHSF 77 + G + +G + + + V++ + F ++ Sbjct: 1 MVDIDGLNSFEIDVLREIGNIGAGNAATALAKMLSKKVNMHVPEVRIMDFKNVPDVLGGA 60 Query: 78 KENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 ++ + + + + L++ ++G P NR L+ ++ + Sbjct: 61 EQPVMGVYLNFEGDVEGSVLLVMDEASAHILIDMMMGR-----PIDTNRPLNDIDLSAVQ 115 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 +++ +ST + + + Sbjct: 116 ELGNILTSSYLGALSTLAKLDVRPSIPCLAIDMAGAILSVPA 157 >gi|330950823|gb|EGH51083.1| type III secretion protein HrcQb [Pseudomonas syringae Cit 7] Length = 133 Score = 44.2 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L +++ R + TL ++ L G ++ A L + + EL V Sbjct: 61 LDSLELDLTLRCGELRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120 Query: 295 NYTIRITDRI 304 ++IT + Sbjct: 121 RLGLQITRLV 130 >gi|322432987|ref|YP_004210236.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp. MP5ACTX9] gi|321165214|gb|ADW70918.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp. MP5ACTX9] Length = 100 Score = 44.2 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + L + +++ T+ ++ L G ++ + T L NG + E V Sbjct: 29 KLVPWLPCTLALEVSVVGFTVGSLLKLTKGSLVQTSCHQSTDIPLHVNGILMAWTEFEVV 88 Query: 293 GKNYTIRITDRI 304 G+ RITD + Sbjct: 89 GERLAARITDLV 100 >gi|14422436|dbj|BAB60843.1| epaO2 [Escherichia coli] Length = 173 Score = 44.2 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + +L V I+ + K L ++ L ++I L + Sbjct: 79 KKNESEIYDENDEQMINSFEELPVKIEFVLVKKIMNLYEIDELCAKRIISLLPESEKNIE 138 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG EL V + I ++ + Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172 >gi|312962467|ref|ZP_07776958.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6] gi|311283394|gb|EFQ61984.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6] Length = 109 Score = 44.2 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 8/75 (10%), Positives = 27/75 (36%) Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 + +++++ + + + K + G+V+P + NG+ E Sbjct: 27 RDLSPSIRPSSMHLEILLQEQLVSRKRLAAFAPGKVLPLAPTVIHGVEVRVNGQLFALGE 86 Query: 289 LGRVGKNYTIRITDR 303 L ++ + + + Sbjct: 87 LVQLEDRLGVELHEV 101 >gi|326794363|ref|YP_004312183.1| surface presentation of antigens (SPOA) protein [Marinomonas mediterranea MMB-1] gi|326545127|gb|ADZ90347.1| surface presentation of antigens (SPOA) protein [Marinomonas mediterranea MMB-1] Length = 142 Score = 43.9 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 31/89 (34%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 S + +++SE +K + + + ++ L IG V+ + Sbjct: 32 SDASDHQSESEPAPSTILKKYPDAPLELTLNAGRISASFDELSQLNIGSVLVATGEKAGY 91 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR 303 A + + I EL V I+IT Sbjct: 92 ATMYHQQQAIARGELVNVEGRLGIQITHV 120 >gi|238793337|ref|ZP_04636963.1| Type III secretion system apparatus protein [Yersinia intermedia ATCC 29909] gi|238727306|gb|EEQ18834.1| Type III secretion system apparatus protein [Yersinia intermedia ATCC 29909] Length = 304 Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 23/69 (33%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 QL + I L D+ L +GQ + + +G+ + S L Sbjct: 229 ALEQLPQTLVMEIGRLTLPLSDIKQLAVGQTLDCKTAFYGEVNIRLHGQSVGSGSLLCCD 288 Query: 294 KNYTIRITD 302 + +RI Sbjct: 289 EQLIVRIEQ 297 >gi|217077807|ref|YP_002335525.1| CheY-P phosphatase CheC [Thermosipho africanus TCF52B] gi|217037662|gb|ACJ76184.1| CheY-P phosphatase CheC [Thermosipho africanus TCF52B] Length = 205 Score = 43.5 bits (101), Expect = 0.038, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 57/199 (28%), Gaps = 20/199 (10%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN----FVFSQ 85 + +G + + VDIS S + S I F+ Sbjct: 8 SQLDFLKEIGNIGSGNAATALSTMIGKKVDISVPSTKVVPISQIPFIFENPEEIVCAIKM 67 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 + ++N V + + L G++ E I L + K + Sbjct: 68 KMREDVEGEILLILNSNTVKEINKILTGSTLEDITS-----LDEFSASMLKEIGNIMCGS 122 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-------EFVTTINMNMTIENVASSFV 198 +S N + + + +++ I ++ IE++ Sbjct: 123 YVTALSGFTGFFINPDPPELAVDMISAVLAEVSLSVSTTEDYILLIETSIKIEDIDKELT 182 Query: 199 ---LIIP-QETLLKTTLIS 213 L++P +E+L K Sbjct: 183 GYLLLLPNEESLEKILKKL 201 >gi|62286914|sp|Q60235|HRCQB_PSESY RecName: Full=Type III secretion protein HrcQb gi|818890|gb|AAB05074.1| HrpU [Pseudomonas syringae pv. syringae] gi|148562539|gb|ABQ88358.1| HrcQb [Pseudomonas syringae pv. syringae] Length = 133 Score = 43.5 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L +++ R + TL ++ L G ++ A L + + EL V Sbjct: 61 LDSLELDLTLRCGDLRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120 Query: 295 NYTIRITDRI 304 ++IT + Sbjct: 121 RLGLQITRLV 130 >gi|66044460|ref|YP_234301.1| type III secretion protein HrcQb [Pseudomonas syringae pv. syringae B728a] gi|63255167|gb|AAY36263.1| type III secretion protein HrcQb [Pseudomonas syringae pv. syringae B728a] Length = 132 Score = 43.5 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L +++ R + TL ++ L G ++ A L + + EL V Sbjct: 60 LDSLELDLTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 119 Query: 295 NYTIRITDRI 304 ++IT + Sbjct: 120 RLGLQITRLV 129 >gi|327401343|ref|YP_004342182.1| CheC, inhibitor of MCP methylation [Archaeoglobus veneficus SNP6] gi|327316851|gb|AEA47467.1| CheC, inhibitor of MCP methylation [Archaeoglobus veneficus SNP6] Length = 198 Score = 43.5 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 6/135 (4%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ---ASLSSWSSNFFIGC 99 + + + + +DV + T S I + + + S + + Sbjct: 19 ARRVAENLSAMLGMDVQMKITKIDFVTLSDIPEEIGDEEMVGVYLMFHGTP-SGHLMVLF 77 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + LL E + ++K I++ + ++ + Sbjct: 78 PVASAKKVASLLLAGIGEDNGTGEG--FTDLDKSAISEVGNIITSSFIDGWANVLKTEID 135 Query: 160 LEDFYDIDYLKKNTN 174 + + I + Sbjct: 136 ISTPHLIHDMGSAVI 150 >gi|94986980|ref|YP_594913.1| putative translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] gi|94731229|emb|CAJ54592.1| putative translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] Length = 360 Score = 43.5 bits (101), Expect = 0.043, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 22/71 (30%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V I I TTL ++ G + ILS K I + L I Sbjct: 290 EVPISFEIGKYNTTLSELEHFIEGHTFTLELDIHSPVILSFEDKTIGTGVLMNFNGVIGI 349 Query: 299 RITDRINFDQK 309 RI + + Sbjct: 350 RILEFSTTIDE 360 >gi|253990918|ref|YP_003042274.1| hypothetical protein PAU_03444 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782368|emb|CAQ85532.1| Hypothetical protein PAU_03444 [Photorhabdus asymbiotica] Length = 71 Score = 43.5 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + V +D + TL +++ L+ GQV ++ ++ IL + + I + L +V + + Sbjct: 1 MRVKLDVVVANCSMTLDELIHLQKGQVKSLMNFVQSEVILKSGNQVIATGILVKVDEQFC 60 Query: 298 IRITDR 303 + I Sbjct: 61 VAIDQV 66 >gi|166154014|ref|YP_001654132.1| type III secretion system protein [Chlamydia trachomatis 434/Bu] gi|166154889|ref|YP_001653144.1| type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335214|ref|ZP_07223458.1| type III secretion system protein [Chlamydia trachomatis L2tet1] gi|165930002|emb|CAP03485.1| Type III secretion component, basal body [Chlamydia trachomatis 434/Bu] gi|165930877|emb|CAP06439.1| Type III secretion component, basal body [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 373 Score = 43.1 bits (100), Expect = 0.052, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I + ++ + + L G V+ F + NG ++ + + IR+ Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370 Query: 301 TDR 303 + Sbjct: 371 LEV 373 >gi|320107031|ref|YP_004182621.1| surface presentation of antigens (SpoA) protein [Terriglobus saanensis SP1PR4] gi|319925552|gb|ADV82627.1| surface presentation of antigens (SpoA) protein [Terriglobus saanensis SP1PR4] Length = 79 Score = 43.1 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V + + L + ++D++ L+ G V+ E L ++ CE V Sbjct: 10 LSTLQVRMKVALPLPRFCVRDLLALQPGSVVGSGWNETEDVPLIGGETQVSWCEFETVED 69 Query: 295 NYTIRITDRI 304 +R+T I Sbjct: 70 RIAVRLTRLI 79 >gi|332344758|gb|AEE58092.1| Type III secretion apparatus protein [Escherichia coli UMNK88] Length = 81 Score = 43.1 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 23/70 (32%) Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 L V I+ + K L ++ L ++I L + + NG EL Sbjct: 1 MINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIRVNGALTGYGELV 60 Query: 291 RVGKNYTIRI 300 V + I Sbjct: 61 EVDDKLGVEI 70 >gi|51102997|gb|AAT96144.1| HrcQa [Pseudomonas viridiflava] Length = 238 Score = 43.1 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 12/90 (13%) Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235 ++ + + + + L P TLL+ ++ Q + + + Sbjct: 114 APDDASFGCRVQVRLGGESLHAHLHSPSHTLLRLLHLAPW-QARYKPVDDTW-------- 164 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 V I T ++ +L+ G V+ Sbjct: 165 ---PVTTPLIIGELVLTPNELASLRPGDVV 191 >gi|288560236|ref|YP_003423722.1| adhesin-like protein [Methanobrevibacter ruminantium M1] gi|288542946|gb|ADC46830.1| adhesin-like protein [Methanobrevibacter ruminantium M1] Length = 2917 Score = 43.1 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 30/271 (11%), Positives = 69/271 (25%), Gaps = 31/271 (11%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 LY D + I + G I + +++ + S Sbjct: 2057 ELYDGTSAVGLIMVSDAILSIDIPAVDYGSPITIYATVEDS------EGNPLSGLVIATL 2110 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++ E + N + AK ++ + Sbjct: 2111 DGVDCNIYVDA-----GEGSITIPNELFAGEYLVTAKLLGEN--NAMDTALLVVNPIEAE 2163 Query: 160 L-EDFYDIDYLKKNTNRLSNE-----FVTT----INMNMTIENVASSFVLIIPQETLLKT 209 L +I Y LS+E V ++ + IE+ + ++P K Sbjct: 2164 LIVSIDNITYNNPVEVELSSEYALDGIVILTIDGVDYAIEIED--GEAIALLPILLDSKD 2221 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 ++ ++ + + + + T D +K+ V + Sbjct: 2222 YEVTAKFIGENFDVEDATTSFTVEAIETA---LTLELENSTITYGDFAIVKVSLVDELGN 2278 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRI 300 L+ + + L V T+ + Sbjct: 2279 PMDGIVTLTVGDQ---TGSLAVVNGEGTVSV 2306 >gi|330969103|gb|EGH69169.1| type III secretion protein HrcQb [Pseudomonas syringae pv. aceris str. M302273PT] Length = 132 Score = 43.1 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L +++ R + TL ++ L G ++ A L + + EL V Sbjct: 60 LDSLELDLTLRCGELRLTLAELRRLDAGTILEVTGIAPGHATLCHGEQVVAEGELVDVEG 119 Query: 295 NYTIRITDRI 304 ++IT + Sbjct: 120 RLGLQITRLV 129 >gi|304414642|ref|ZP_07395718.1| putative flagellar motor switch protein [Candidatus Regiella insecticola LSR1] gi|304283180|gb|EFL91588.1| putative flagellar motor switch protein [Candidatus Regiella insecticola LSR1] Length = 297 Score = 42.7 bits (99), Expect = 0.066, Method: Composition-based stats. Identities = 18/206 (8%), Positives = 67/206 (32%), Gaps = 16/206 (7%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLY-NRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + N ++ +L + G S ++ + + ++ E +L + L + Sbjct: 84 GHVAFDTERNFLLNILNDYYGLSKNSVTEPSIHVPITQTEARLKNKLG----LELTELFL 139 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 + L ++ + ++ + F +++ + Sbjct: 140 NHDDFGEKLAFKTT-------NGVFIKQWSYRLIFSLA-GDEQHVFYILLDANHADRILH 191 Query: 212 ISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 ++ + + + P + +L ++++ ++ TL ++ L+ G++I Sbjct: 192 SQDANDEENKKTTDNNSPLPLEKLFNKLPISLNIKLISVNLTLAELKALEKGEIISISMP 251 Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296 + + ++I+S + Sbjct: 252 DHFP--VFIGTEQIFSAIITENRGKL 275 >gi|171322881|ref|ZP_02911586.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171091755|gb|EDT37285.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 70 Score = 42.7 bits (99), Expect = 0.067, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRI 300 + I+ ++ ++ L+ G V+ + L A G+ I L VG + +RI Sbjct: 1 MHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVGAHLGVRI 60 Query: 301 TDRINFD 307 D Sbjct: 61 DRMAGDD 67 >gi|76789412|ref|YP_328498.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13] gi|237803102|ref|YP_002888296.1| type III secretion system protein [Chlamydia trachomatis B/Jali20/OT] gi|237805023|ref|YP_002889177.1| type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255349061|ref|ZP_05381068.1| type III secretion system protein [Chlamydia trachomatis 70] gi|255503599|ref|ZP_05381989.1| type III secretion system protein [Chlamydia trachomatis 70s] gi|255507279|ref|ZP_05382918.1| type III secretion system protein [Chlamydia trachomatis D(s)2923] gi|76167942|gb|AAX50950.1| SctQ [Chlamydia trachomatis A/HAR-13] gi|231273323|emb|CAX10238.1| Type III secretion component, basal body [Chlamydia trachomatis B/TZ1A828/OT] gi|231274336|emb|CAX11131.1| Type III secretion component, basal body [Chlamydia trachomatis B/Jali20/OT] gi|289525716|emb|CBJ15197.1| Type III secretion component, basal body [Chlamydia trachomatis Sweden2] gi|296435286|gb|ADH17464.1| type III secretion system protein [Chlamydia trachomatis E/150] gi|296439004|gb|ADH21157.1| type III secretion system protein [Chlamydia trachomatis E/11023] Length = 373 Score = 42.7 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I + ++ + + L G V+ F + NG ++ + + IR+ Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370 Query: 301 TDR 303 + Sbjct: 371 LEV 373 >gi|222480967|ref|YP_002567204.1| CheC, inhibitor of MCP methylation [Halorubrum lacusprofundi ATCC 49239] gi|222453869|gb|ACM58134.1| CheC, inhibitor of MCP methylation [Halorubrum lacusprofundi ATCC 49239] Length = 399 Score = 42.7 bits (99), Expect = 0.071, Method: Composition-based stats. Identities = 9/136 (6%), Positives = 28/136 (20%), Gaps = 15/136 (11%) Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL--SSW 91 + L + + D+ + T + +F + Sbjct: 10 ACNRLAERGARQAAGALTDLTGTDLSVEVTGASVASGEDLAEAFAGRESIGVSVGLRGGL 69 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + V LL L G +++ + + Sbjct: 70 EGEAVLAFDAENVDALLSLLPGG-------------ASMGRSAVTEVGNIALGGFLDGWA 116 Query: 152 TTQESSPNLEDFYDID 167 ++ ++ + Sbjct: 117 NYLGAAIDMTPPRYFE 132 >gi|296437141|gb|ADH19311.1| type III secretion system protein [Chlamydia trachomatis G/11222] Length = 373 Score = 42.7 bits (99), Expect = 0.073, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I + ++ + + L G V+ F + NG ++ + + IR+ Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370 Query: 301 TDR 303 + Sbjct: 371 LEV 373 >gi|15834668|ref|NP_296427.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270284833|ref|ZP_06194227.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270288862|ref|ZP_06195164.1| type III secretion system protein [Chlamydia muridarum Weiss] gi|301336213|ref|ZP_07224415.1| type III secretion system protein [Chlamydia muridarum MopnTet14] gi|8163109|gb|AAF73521.1| type III secretion translocase SctQ [Chlamydia muridarum Nigg] Length = 373 Score = 42.7 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 1/63 (1%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I + ++ + + L+ G ++ F + NG ++ + + IR+ Sbjct: 311 IVAEVARYTLSVGEFLKLEPGSILHFEGMHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370 Query: 301 TDR 303 + Sbjct: 371 LEV 373 Score = 37.3 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 59/218 (27%), Gaps = 21/218 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW-SSNFFIGCSNNLVITLLENLLGASH 116 V++S+ S + + + E+ + + + S F+I S + L+ + S Sbjct: 53 VELSFESQGLLSAAPAVQEYGEHVLLQPFLANPFESGEFYIVSSEEDLQALIGTIFNDSS 112 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 L + P++ D Sbjct: 113 LASYFYEKDRLLGFHYYFVAEICKLLQE---------VSWIPSMAVKVTGDVAFSARALE 163 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 + V + + V F +++P T L +N++ + + Sbjct: 164 GDYHVVQVTCRLDSSYV--RFSVLVPDTTAQSV-YKFLEEKNQTFDIQKID--------M 212 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 Q V + + + + +D + G I Sbjct: 213 QTPVTLSVEVGFCQISEEDWHQVVPGSFILLDACLYDP 250 >gi|15605405|ref|NP_220191.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX] gi|255311498|ref|ZP_05354068.1| type III secretion system protein [Chlamydia trachomatis 6276] gi|255317800|ref|ZP_05359046.1| type III secretion system protein [Chlamydia trachomatis 6276s] gi|3329123|gb|AAC68267.1| Flagellar Motor Switch Domain/YscQ family [Chlamydia trachomatis D/UW-3/CX] gi|296436213|gb|ADH18387.1| type III secretion system protein [Chlamydia trachomatis G/9768] gi|296438073|gb|ADH20234.1| type III secretion system protein [Chlamydia trachomatis G/11074] gi|297140574|gb|ADH97332.1| type III secretion system protein [Chlamydia trachomatis G/9301] gi|297748803|gb|ADI51349.1| type III secreted protein SctQ [Chlamydia trachomatis D-EC] gi|297749683|gb|ADI52361.1| type III secreted protein SctQ [Chlamydia trachomatis D-LC] Length = 373 Score = 42.7 bits (99), Expect = 0.080, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I + ++ + + L G V+ F + NG ++ + + IR+ Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370 Query: 301 TDR 303 + Sbjct: 371 LEV 373 >gi|15618614|ref|NP_224900.1| type III secretion system protein [Chlamydophila pneumoniae CWL029] gi|15836236|ref|NP_300760.1| type III secretion system protein [Chlamydophila pneumoniae J138] gi|16752336|ref|NP_444594.1| type III secretion system protein [Chlamydophila pneumoniae AR39] gi|33242062|ref|NP_877003.1| type III secretion system protein [Chlamydophila pneumoniae TW-183] gi|4377007|gb|AAD18843.1| Flagellar Motor Switch Domain/YscQ family [Chlamydophila pneumoniae CWL029] gi|6672034|dbj|BAA88654.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae] gi|8163350|gb|AAF73618.1| type III secretion translocase SctQ [Chlamydophila pneumoniae AR39] gi|8979076|dbj|BAA98911.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae J138] gi|33236572|gb|AAP98660.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183] Length = 371 Score = 42.3 bits (98), Expect = 0.087, Method: Composition-based stats. Identities = 7/62 (11%), Positives = 24/62 (38%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + + + L +G ++ + + +G ++ E+ +G IR+ Sbjct: 310 LVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDVLGIRVL 369 Query: 302 DR 303 + Sbjct: 370 EV 371 >gi|213650746|ref|ZP_03380799.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 51 Score = 42.3 bits (98), Expect = 0.088, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%) Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +P I +G + + + G V Y +R+ IN Sbjct: 1 MPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 40 >gi|330872917|gb|EGH07066.1| type III secretion protein HrcQb [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 133 Score = 42.3 bits (98), Expect = 0.091, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 L +++ R + TL ++ L G ++ A L + + EL V Sbjct: 60 ALDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVD 119 Query: 294 KNYTIRITD 302 ++IT Sbjct: 120 GRLGLQITR 128 >gi|302185359|ref|ZP_07262032.1| type III secretion system apparatus protein YscQ/HrcQ [Pseudomonas syringae pv. syringae 642] gi|256259401|gb|ACU65038.1| HrcQ [Pseudomonas syringae pv. syringae] Length = 393 Score = 42.3 bits (98), Expect = 0.091, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 24/68 (35%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L + + R TL ++ TL G V+ + A L + + EL V Sbjct: 322 NDLALPLTLRCGQINLTLGELATLVPGTVLEVPGIKPGLAGLYYGERRLAQGELVDVEGR 381 Query: 296 YTIRITDR 303 ++I Sbjct: 382 LGLQILQV 389 >gi|152975176|ref|YP_001374693.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023928|gb|ABS21698.1| flagellar motor switch protein, putative [Bacillus cytotoxicus NVH 391-98] Length = 74 Score = 42.3 bits (98), Expect = 0.092, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 24/67 (35%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + I I K ++D++ + G + K L +EI + ++ Sbjct: 5 DDIPLTIYFEIGKTKKKIEDLLHITKGTLYRLEDSTKNTVRLMLENEEIGTGKILTKNGK 64 Query: 296 YTIRITD 302 + I + Sbjct: 65 MYVEIVE 71 >gi|269302491|gb|ACZ32591.1| type III secretion apparatus protein, YscQ/HrcQ family [Chlamydophila pneumoniae LPCoLN] Length = 371 Score = 42.3 bits (98), Expect = 0.092, Method: Composition-based stats. Identities = 7/62 (11%), Positives = 24/62 (38%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + + + L +G ++ + + +G ++ E+ +G IR+ Sbjct: 310 LVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDVLGIRVL 369 Query: 302 DR 303 + Sbjct: 370 EV 371 >gi|304321118|ref|YP_003854761.1| hypothetical protein PB2503_07819 [Parvularcula bermudensis HTCC2503] gi|303300020|gb|ADM09619.1| hypothetical protein PB2503_07819 [Parvularcula bermudensis HTCC2503] Length = 309 Score = 42.3 bits (98), Expect = 0.092, Method: Composition-based stats. Identities = 8/70 (11%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA----NGKEIYSCELGRVGKNYTI 298 + + + ++ ++ LK G + + ++ + + ELG + + ++ Sbjct: 192 EALVAKPRLSITSILALKAGDKLQLPGAKLEAVTVAVPTAKSALSLAKGELGTIEQRRSL 251 Query: 299 RITDRINFDQ 308 R+T+ ++ + Sbjct: 252 RLTEILDPGE 261 >gi|327193026|gb|EGE59938.1| flagellar motor switch protein FliN [Rhizobium etli CNPAF512] Length = 56 Score = 42.3 bits (98), Expect = 0.093, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDRINFDQ 308 + L G I + + NG+ I E+ + + +++ + ++ + Sbjct: 1 MNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTKK 55 >gi|66044461|ref|YP_234302.1| type III secretion protein HrcQa [Pseudomonas syringae pv. syringae B728a] gi|63255168|gb|AAY36264.1| type III secretion protein HrcQa [Pseudomonas syringae pv. syringae B728a] Length = 238 Score = 42.3 bits (98), Expect = 0.098, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 12/90 (13%) Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235 E +++ + + L TLL+ + Q + + Sbjct: 114 APTEPAIGCRVHVRLGSERLDAHLHAAPATLLRLLGSADW-QVLKRDVDQSWS------- 165 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 V + TL+ + L+ G V+ Sbjct: 166 ----VATPLIVGELSLTLEQIAALRPGDVV 191 >gi|312171378|emb|CBX79637.1| Surface presentation of antigens protein spaO [Erwinia amylovora ATCC BAA-2158] Length = 308 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKN 295 +L VNI+ ++ TL ++ ++ G +P + + N K EL + + Sbjct: 226 KLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEKKIKIYLNRKLFACGELVAMEDGS 285 Query: 296 YTIRITDRINF 306 + + I Sbjct: 286 FAVEINQVTPG 296 >gi|292487270|ref|YP_003530142.1| surface presentation of antigens protein spaO [Erwinia amylovora CFBP1430] gi|292900358|ref|YP_003539727.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200206|emb|CBJ47334.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552689|emb|CBA19734.1| Surface presentation of antigens protein spaO [Erwinia amylovora CFBP1430] Length = 308 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKN 295 +L VNI+ ++ TL ++ ++ G +P + + N K EL + + Sbjct: 226 KLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEKKIKIYLNRKLFACGELVAMEDGS 285 Query: 296 YTIRITDRINF 306 + + I Sbjct: 286 FAVEINQVTPG 296 >gi|330969102|gb|EGH69168.1| type III secretion protein HrcQa [Pseudomonas syringae pv. aceris str. M302273PT] Length = 238 Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 12/90 (13%) Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235 E +++ + + L TLL+ + Q + + Sbjct: 114 APTEPAIGCRVHVRLGSERLDAHLHAAPATLLRLLGSADW-QVLKRDVDQSWS------- 165 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 V + TL+ + L+ G V+ Sbjct: 166 ----VATPLIVGELSLTLEQIAALRPGDVV 191 >gi|229166617|ref|ZP_04294369.1| Flagellar motor switch protein [Bacillus cereus AH621] gi|228616871|gb|EEK73944.1| Flagellar motor switch protein [Bacillus cereus AH621] Length = 74 Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + I I K ++D++ + G + + K L +EI + ++ Sbjct: 5 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSAKNTVRLMLENEEIGTGKILTKNGK 64 Query: 296 YTIRITD 302 + I + Sbjct: 65 MYVEIVE 71 >gi|238796112|ref|ZP_04639623.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC 43969] gi|238720057|gb|EEQ11862.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC 43969] Length = 303 Score = 41.9 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 6/48 (12%), Positives = 16/48 (33%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 + V + + L+++ ++ G V + + AN Sbjct: 219 VAGVTVKLTFVLGHSDIPLQELAHIQPGAVYELGADKDREVKIYANSV 266 >gi|322368719|ref|ZP_08043286.1| taxis cluster protein CheC [Haladaptatus paucihalophilus DX253] gi|320551450|gb|EFW93097.1| taxis cluster protein CheC [Haladaptatus paucihalophilus DX253] Length = 389 Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 20/222 (9%), Positives = 57/222 (25%), Gaps = 14/222 (6%) Query: 20 RLTGKLGDKKTIEKISS--SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L G G+ ++E +S + + + ++ + T + + Sbjct: 172 ELLGDDGETVSVEDLSHFDEMTRGGATTVAENITAMTGIETTVEITHVSFVPVEEVPEAL 231 Query: 78 KENFVF-SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + L + F + T ++ GA + LS E+ + Sbjct: 232 GDTTYVGVVIELETSPGGFVLIL---FDETSARDISGALLPGDDGFSDGELSETEQNAIQ 288 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDF-------YDIDYLKKNTNRLSNEFVTTINMNMT 189 +++ + E++ ++ I EF + + Sbjct: 289 ELGNIMASSFIDGWANALETTIDISPPTFAHDMGSAIADPLVAQLGQKQEFAFVSDATIR 348 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231 L + + + S + ++ + Sbjct: 349 AAKTPFDCSLYVLPDESE-LREVLSSLDADATSERKTNAGRL 389 >gi|229160724|ref|ZP_04288716.1| Flagellar motor switch protein [Bacillus cereus R309803] gi|228622739|gb|EEK79573.1| Flagellar motor switch protein [Bacillus cereus R309803] Length = 74 Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 25/67 (37%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + I I K ++D++ + G + + K + +EI + ++ Sbjct: 5 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRIMLENEEIGTGKILTKNGK 64 Query: 296 YTIRITD 302 + I + Sbjct: 65 MYVEIVE 71 >gi|289677998|ref|ZP_06498888.1| type III secretion protein hrcQb [Pseudomonas syringae pv. syringae FF5] gi|330975865|gb|EGH75931.1| type III secretion protein HrcQb [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 133 Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + + R + TL ++ L G ++ A L + + EL V Sbjct: 61 LDSLELALTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120 Query: 295 NYTIRITDRI 304 ++IT + Sbjct: 121 RLGLQITRLV 130 >gi|330963054|gb|EGH63314.1| type III secretion protein HrcQb [Pseudomonas syringae pv. actinidiae str. M302091] Length = 133 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L +++ R + TL ++ L G ++ A L + + EL V Sbjct: 61 LDSLALDLTLRCGELRLTLAELRGLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVDG 120 Query: 295 NYTIRITD 302 ++IT Sbjct: 121 RLGLQITR 128 >gi|213968263|ref|ZP_03396407.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato T1] gi|301381808|ref|ZP_07230226.1| type III secretion protein hrcQb [Pseudomonas syringae pv. tomato Max13] gi|302061999|ref|ZP_07253540.1| type III secretion protein hrcQb [Pseudomonas syringae pv. tomato K40] gi|302135081|ref|ZP_07261071.1| type III secretion protein hrcQb [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926901|gb|EEB60452.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato T1] Length = 137 Score = 41.5 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L +++ R + TL ++ L G ++ A L + + EL V Sbjct: 65 LDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVDG 124 Query: 295 NYTIRITD 302 ++IT Sbjct: 125 RLGLQITR 132 >gi|257487233|ref|ZP_05641274.1| type III secretion component protein HrcQb [Pseudomonas syringae pv. tabaci ATCC 11528] gi|238577788|gb|ACR46699.1| HrcQb [Pseudomonas syringae pv. tabaci] gi|331009153|gb|EGH89209.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 129 Score = 41.5 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%) Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + + L +++ R + TL ++ L G ++ A Sbjct: 39 TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGIAPGHAT 98 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 L + + EL V ++IT + Sbjct: 99 LCHGEQVVAEGELVDVEGRLGLQITRLVTR 128 >gi|187778448|ref|ZP_02994921.1| hypothetical protein CLOSPO_02042 [Clostridium sporogenes ATCC 15579] gi|187772073|gb|EDU35875.1| hypothetical protein CLOSPO_02042 [Clostridium sporogenes ATCC 15579] Length = 864 Score = 41.5 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 13/81 (16%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI--- 298 + I+ + + D+V LK G ++P R L N E G+NY + Sbjct: 124 LSKNISSTELVVGDIVRLKPGDIVPADIRIIETERLRVN-------EAVITGENYAVEKY 176 Query: 299 --RITDRINFDQKSLKNFLHK 317 ++ D+ + +N L K Sbjct: 177 STKVEDKEITTSEM-RNILFK 196 >gi|30019807|ref|NP_831438.1| flagellar motor switch protein [Bacillus cereus ATCC 14579] gi|47565431|ref|ZP_00236472.1| flagellar motor switch protein fliN VC2125, putative [Bacillus cereus G9241] gi|49477320|ref|YP_035881.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143696|ref|YP_083132.1| flagellar motor switch protein [Bacillus cereus E33L] gi|75763359|ref|ZP_00743097.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118477196|ref|YP_894347.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|163939572|ref|YP_001644456.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4] gi|196033551|ref|ZP_03100963.1| flagellar motor switch protein FliN domain protein [Bacillus cereus W] gi|196038931|ref|ZP_03106238.1| flagellar motor switch protein FliN domain protein [Bacillus cereus NVH0597-99] gi|196045029|ref|ZP_03112262.1| flagellar motor switch protein FliN domain protein [Bacillus cereus 03BB108] gi|206970641|ref|ZP_03231593.1| flagellar motor switch protein FliN domain protein [Bacillus cereus AH1134] gi|206974901|ref|ZP_03235816.1| flagellar motor switch protein FliN domain protein [Bacillus cereus H3081.97] gi|217959245|ref|YP_002337793.1| flagellar motor switch protein [Bacillus cereus AH187] gi|218235179|ref|YP_002366447.1| flagellar motor switch protein [Bacillus cereus B4264] gi|218896696|ref|YP_002445107.1| flagellar motor switch protein FliN domain protein [Bacillus cereus G9842] gi|218902876|ref|YP_002450710.1| flagellar motor switch protein FliN domain protein [Bacillus cereus AH820] gi|222095385|ref|YP_002529445.1| flagellar motor switch protein [Bacillus cereus Q1] gi|225863620|ref|YP_002748998.1| hypothetical protein BCA_1722 [Bacillus cereus 03BB102] gi|228900344|ref|ZP_04064573.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222] gi|228907395|ref|ZP_04071253.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200] gi|228914340|ref|ZP_04077955.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228920472|ref|ZP_04083817.1| Flagellar motor switch protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926798|ref|ZP_04089866.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933046|ref|ZP_04095909.1| Flagellar motor switch protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228938875|ref|ZP_04101475.1| Flagellar motor switch protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228945365|ref|ZP_04107720.1| Flagellar motor switch protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228952145|ref|ZP_04114237.1| Flagellar motor switch protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958043|ref|ZP_04119778.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964746|ref|ZP_04125853.1| Flagellar motor switch protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228971756|ref|ZP_04132377.1| Flagellar motor switch protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978365|ref|ZP_04138742.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407] gi|228984847|ref|ZP_04145017.1| Flagellar motor switch protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229017048|ref|ZP_04173967.1| Flagellar motor switch protein [Bacillus cereus AH1273] gi|229023229|ref|ZP_04179739.1| Flagellar motor switch protein [Bacillus cereus AH1272] gi|229029442|ref|ZP_04185525.1| Flagellar motor switch protein [Bacillus cereus AH1271] gi|229043518|ref|ZP_04191227.1| Flagellar motor switch protein [Bacillus cereus AH676] gi|229058411|ref|ZP_04196795.1| Flagellar motor switch protein [Bacillus cereus AH603] gi|229069313|ref|ZP_04202603.1| Flagellar motor switch protein [Bacillus cereus F65185] gi|229078944|ref|ZP_04211496.1| Flagellar motor switch protein [Bacillus cereus Rock4-2] gi|229090725|ref|ZP_04221958.1| Flagellar motor switch protein [Bacillus cereus Rock3-42] gi|229096247|ref|ZP_04227220.1| Flagellar motor switch protein [Bacillus cereus Rock3-29] gi|229102361|ref|ZP_04233069.1| Flagellar motor switch protein [Bacillus cereus Rock3-28] gi|229109218|ref|ZP_04238817.1| Flagellar motor switch protein [Bacillus cereus Rock1-15] gi|229115202|ref|ZP_04244612.1| Flagellar motor switch protein [Bacillus cereus Rock1-3] gi|229121314|ref|ZP_04250545.1| Flagellar motor switch protein [Bacillus cereus 95/8201] gi|229127089|ref|ZP_04256086.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4] gi|229132590|ref|ZP_04261438.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196] gi|229138462|ref|ZP_04267051.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26] gi|229144375|ref|ZP_04272780.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24] gi|229149967|ref|ZP_04278193.1| Flagellar motor switch protein [Bacillus cereus m1550] gi|229155333|ref|ZP_04283443.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342] gi|229172408|ref|ZP_04299967.1| Flagellar motor switch protein [Bacillus cereus MM3] gi|229178170|ref|ZP_04305541.1| Flagellar motor switch protein [Bacillus cereus 172560W] gi|229183954|ref|ZP_04311169.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1] gi|296502363|ref|YP_003664063.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|300117314|ref|ZP_07055104.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|301053300|ref|YP_003791511.1| flagellar motor switch protein [Bacillus anthracis CI] gi|29895352|gb|AAP08639.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579] gi|47557421|gb|EAL15748.1| flagellar motor switch protein fliN VC2125, putative [Bacillus cereus G9241] gi|49328876|gb|AAT59522.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977165|gb|AAU18715.1| flagellar motor switch protein N [Bacillus cereus E33L] gi|74489150|gb|EAO52628.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118416421|gb|ABK84840.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|163861769|gb|ABY42828.1| flagellar motor switch protein, putative [Bacillus weihenstephanensis KBAB4] gi|195993985|gb|EDX57941.1| flagellar motor switch protein FliN domain protein [Bacillus cereus W] gi|196024031|gb|EDX62705.1| flagellar motor switch protein FliN domain protein [Bacillus cereus 03BB108] gi|196030076|gb|EDX68676.1| flagellar motor switch protein FliN domain protein [Bacillus cereus NVH0597-99] gi|206734277|gb|EDZ51447.1| flagellar motor switch protein FliN domain protein [Bacillus cereus AH1134] gi|206746920|gb|EDZ58312.1| flagellar motor switch protein FliN domain protein [Bacillus cereus H3081.97] gi|217063362|gb|ACJ77612.1| flagellar motor switch protein FliN domain protein [Bacillus cereus AH187] gi|218163136|gb|ACK63128.1| flagellar motor switch protein FliN domain protein [Bacillus cereus B4264] gi|218539681|gb|ACK92079.1| flagellar motor switch protein FliN domain protein [Bacillus cereus AH820] gi|218542965|gb|ACK95359.1| flagellar motor switch protein FliN domain protein [Bacillus cereus G9842] gi|221239443|gb|ACM12153.1| flagellar motor switch protein [Bacillus cereus Q1] gi|225788270|gb|ACO28487.1| conserved domain protein [Bacillus cereus 03BB102] gi|228599479|gb|EEK57084.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1] gi|228605300|gb|EEK62750.1| Flagellar motor switch protein [Bacillus cereus 172560W] gi|228610879|gb|EEK68142.1| Flagellar motor switch protein [Bacillus cereus MM3] gi|228628048|gb|EEK84765.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342] gi|228633489|gb|EEK90092.1| Flagellar motor switch protein [Bacillus cereus m1550] gi|228639006|gb|EEK95431.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24] gi|228644999|gb|EEL01242.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26] gi|228650822|gb|EEL06809.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196] gi|228656205|gb|EEL12046.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4] gi|228662159|gb|EEL17768.1| Flagellar motor switch protein [Bacillus cereus 95/8201] gi|228668342|gb|EEL23774.1| Flagellar motor switch protein [Bacillus cereus Rock1-3] gi|228674228|gb|EEL29473.1| Flagellar motor switch protein [Bacillus cereus Rock1-15] gi|228681008|gb|EEL35177.1| Flagellar motor switch protein [Bacillus cereus Rock3-28] gi|228687207|gb|EEL41112.1| Flagellar motor switch protein [Bacillus cereus Rock3-29] gi|228692667|gb|EEL46393.1| Flagellar motor switch protein [Bacillus cereus Rock3-42] gi|228704358|gb|EEL56792.1| Flagellar motor switch protein [Bacillus cereus Rock4-2] gi|228713800|gb|EEL65685.1| Flagellar motor switch protein [Bacillus cereus F65185] gi|228719920|gb|EEL71510.1| Flagellar motor switch protein [Bacillus cereus AH603] gi|228725740|gb|EEL76988.1| Flagellar motor switch protein [Bacillus cereus AH676] gi|228731901|gb|EEL82800.1| Flagellar motor switch protein [Bacillus cereus AH1271] gi|228738023|gb|EEL88509.1| Flagellar motor switch protein [Bacillus cereus AH1272] gi|228744221|gb|EEL94304.1| Flagellar motor switch protein [Bacillus cereus AH1273] gi|228774797|gb|EEM23193.1| Flagellar motor switch protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228781382|gb|EEM29583.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407] gi|228787846|gb|EEM35804.1| Flagellar motor switch protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794996|gb|EEM42495.1| Flagellar motor switch protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228801560|gb|EEM48442.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807499|gb|EEM54026.1| Flagellar motor switch protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228814337|gb|EEM60603.1| Flagellar motor switch protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228820724|gb|EEM66749.1| Flagellar motor switch protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228826647|gb|EEM72418.1| Flagellar motor switch protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832911|gb|EEM78480.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839102|gb|EEM84398.1| Flagellar motor switch protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228845334|gb|EEM90370.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228852256|gb|EEM97052.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200] gi|228859231|gb|EEN03662.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222] gi|296323415|gb|ADH06343.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|298725149|gb|EFI65801.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|300375469|gb|ADK04373.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] gi|324325780|gb|ADY21040.1| flagellar motor switch protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326939375|gb|AEA15271.1| flagellar motor switch protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 74 Score = 41.5 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + I I K ++D++ + G + + K L +EI + ++ Sbjct: 5 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 64 Query: 296 YTIRITD 302 + I + Sbjct: 65 MYVEIVE 71 >gi|330901780|gb|EGH33199.1| type III secretion protein HrcQb [Pseudomonas syringae pv. japonica str. M301072PT] gi|330903314|gb|EGH33886.1| type III secretion protein HrcQb [Pseudomonas syringae pv. japonica str. M301072PT] Length = 133 Score = 41.5 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + + R + TL ++ L G ++ A L + + EL V Sbjct: 61 LDSLELALTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120 Query: 295 NYTIRITDRI 304 ++IT + Sbjct: 121 RLGLQITRLV 130 >gi|330937034|gb|EGH41122.1| type III secretion protein HrcQb [Pseudomonas syringae pv. pisi str. 1704B] Length = 133 Score = 41.5 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + + R + TL ++ L G ++ A L + + EL V Sbjct: 61 LDSLELALTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120 Query: 295 NYTIRITDRI 304 ++IT + Sbjct: 121 RLGLQITRLV 130 >gi|302387771|ref|YP_003823593.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1] gi|302198399|gb|ADL05970.1| CheC, inhibitor of MCP methylation [Clostridium saccharolyticum WM1] Length = 208 Score = 41.5 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 14/180 (7%), Positives = 42/180 (23%), Gaps = 16/180 (8%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN----FVFSQASL 88 + +G + + V ++ + ++ I + Sbjct: 15 DLIREIGSIGTGNAATALSSLLGKTVRMTLPDVKILGYNEAIKYLGDPEEIVAAILVKMT 74 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + +L S L+ +E + I + Sbjct: 75 GEINGLMLFILKLDFINEVL-----TSVMQQNIEDYYQLNVLETSALEEIGNIIISSYVN 129 Query: 149 CISTTQESSPNLEDFYDIDY-------LKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 +S+ + + NL + + + I+ I L++ Sbjct: 130 AMSSLSDVTINLSVPDIAVNMLGGILSVPMVEFGYQTDKMMMISGQFVIGGKVLHSDLLM 189 >gi|28868604|ref|NP_791223.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato str. DC3000] gi|62286949|sp|Q9F0H3|HRCQB_PSESM RecName: Full=Type III secretion protein HrcQb gi|11276515|gb|AAG33883.1| HrcQb [Pseudomonas syringae pv. tomato] gi|28851842|gb|AAO54918.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato str. DC3000] gi|331015102|gb|EGH95158.1| type III secretion protein HrcQb [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 137 Score = 41.5 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L +++ R + TL ++ L G ++ A L + + EL V Sbjct: 65 LDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVDG 124 Query: 295 NYTIRITD 302 ++IT Sbjct: 125 RLGLQITR 132 >gi|254575131|gb|ACT68032.1| type III secretion protein [Pantoea stewartii subsp. stewartii DC283] Length = 305 Score = 41.5 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKNYT 297 V+I+ ++ + TL ++ ++ G +P + + N K EL + Sbjct: 226 PVDIEFVLDGGRVTLVELEDIRPGAALPLPQDAEKNMKIYLNKKLFARGELVALENGALA 285 Query: 298 IRITDR 303 + + Sbjct: 286 VEMNHV 291 >gi|42780855|ref|NP_978102.1| flagellar motor switch protein [Bacillus cereus ATCC 10987] gi|229195974|ref|ZP_04322727.1| Flagellar motor switch protein [Bacillus cereus m1293] gi|42736775|gb|AAS40710.1| flagellar motor switch protein, putative [Bacillus cereus ATCC 10987] gi|228587533|gb|EEK45598.1| Flagellar motor switch protein [Bacillus cereus m1293] Length = 79 Score = 41.5 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + I I K ++D++ + G + + K L +EI + ++ Sbjct: 10 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 69 Query: 296 YTIRITD 302 + I + Sbjct: 70 MYVEIVE 76 >gi|331664427|ref|ZP_08365333.1| typeIII secretion apparatus protein [Escherichia coli TA143] gi|331058358|gb|EGI30339.1| typeIII secretion apparatus protein [Escherichia coli TA143] Length = 113 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L V I+ + K L ++ L ++I L + + NG EL V Sbjct: 38 EDLPVKIEFVLEKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 97 Query: 296 YTIRITDRINFDQKS 310 + I ++ + Sbjct: 98 LGVEIHSWLSGNNNV 112 >gi|229189860|ref|ZP_04316870.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876] gi|228593534|gb|EEK51343.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876] Length = 81 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + I I K ++D++ + G + + K L +EI + ++ Sbjct: 12 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 71 Query: 296 YTIRITD 302 + I + Sbjct: 72 MYVEIVE 78 >gi|320329923|gb|EFW85911.1| type III secretion protein hrcQb [Pseudomonas syringae pv. glycinea str. race 4] gi|330874623|gb|EGH08772.1| type III secretion protein HrcQb [Pseudomonas syringae pv. glycinea str. race 4] Length = 128 Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 3/90 (3%) Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + + L +++ R + TL ++ L G ++ + A Sbjct: 38 TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGIQPGHAT 97 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 L + + EL V ++IT + Sbjct: 98 LCHGEQVVAEGELVDVEGRLGLQITRLVTR 127 >gi|297621833|ref|YP_003709970.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044] gi|297377134|gb|ADI38964.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044] Length = 281 Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 30/250 (12%), Positives = 68/250 (27%), Gaps = 33/250 (13%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSH--IIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103 L + K ++ + + + S++S N +I Sbjct: 38 LAENLKNLLEFQ-SLEIVPSEFVWAEEGAATKGMGSPLSIVKFSIASLEGNVYIAIPQEE 96 Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163 + +++ LL E P + + ++ + Q I P LE Sbjct: 97 IRKIMDLLLLKGSEPAPIDDD-----FQIAFLDFLTLEVMHAVRQ-IDYPPNLLPRLEKN 150 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223 ++ N + +N+ +T ++ S P+ + + SL + Sbjct: 151 AEM----------PNTPMLVMNLTVTADSFVFS-----PRIMISEEMNRSLKEHYVKSKE 195 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH------REKTCAIL 277 + P + + +V + + +K G I L Sbjct: 196 NAVFKRPLSDQC---DVIVHLEAGKTTLSQAQWKEVKPGDFILLDRCSLKPGENSGTVTL 252 Query: 278 SANGKEIYSC 287 + G I Sbjct: 253 TLKGHPILRG 262 >gi|330984965|gb|EGH83068.1| type III secretion protein HrcQb [Pseudomonas syringae pv. lachrymans str. M301315] Length = 129 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%) Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + + L +++ R + TL ++ L G ++ A Sbjct: 39 TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHAT 98 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 L + + EL V ++IT + Sbjct: 99 LCHGEQVVAEGELVDVEGRLGLQITRLVKR 128 >gi|71734621|ref|YP_273545.1| type III secretion component protein HrcQb [Pseudomonas syringae pv. phaseolicola 1448A] gi|62510672|sp|O85094|HRCQB_PSESH RecName: Full=Type III secretion protein HrcQb gi|3282780|gb|AAC25068.1| HrcQ2 [Pseudomonas syringae pv. phaseolicola] gi|42562001|gb|AAS20443.1| HrcQb [Pseudomonas syringae pv. phaseolicola] gi|71555174|gb|AAZ34385.1| type III secretion component protein HrcQb [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322954|gb|EFW79044.1| type III secretion protein hrcQb [Pseudomonas syringae pv. glycinea str. B076] Length = 128 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%) Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + + L +++ R + TL ++ L G ++ A Sbjct: 38 TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHAT 97 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 L + + EL V ++IT + Sbjct: 98 LCHGEQVVAEGELVDVEGRLGLQITRLVTR 127 >gi|237800002|ref|ZP_04588463.1| type III secretion protein HrcQb [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022857|gb|EGI02914.1| type III secretion protein HrcQb [Pseudomonas syringae pv. oryzae str. 1_6] Length = 136 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 1/96 (1%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + +Q ++ D D + L +++ R + +L ++ L G ++ Sbjct: 37 EQPEYAPAEAQESEQDHDHDRHDA-SSDFDSLALDLTLRCGELRLSLAELRRLDAGTILE 95 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 A L + + EL V ++IT Sbjct: 96 VSGIAPGYATLCHADRVVAEGELVDVDGRLGLQITR 131 >gi|269138230|ref|YP_003294930.1| translocation protein in type III secretion [Edwardsiella tarda EIB202] gi|267983890|gb|ACY83719.1| translocation protein in type III secretion [Edwardsiella tarda EIB202] gi|304558273|gb|ADM40937.1| EsaQ [Edwardsiella tarda FL6-60] Length = 304 Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 20/67 (29%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + + + + G P LS G L R+ + + Sbjct: 230 EICLLAEAGRVSLSAQSLGEWAPGLETPLNAYAYPRLQLSLRGAPWAEGTLLRLDDGWAV 289 Query: 299 RITDRIN 305 RIT RI Sbjct: 290 RITRRIP 296 >gi|62199643|gb|AAV69420.1| EsaQ [Edwardsiella tarda] Length = 304 Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 20/67 (29%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + + + + G P LS G L R+ + + Sbjct: 230 EICLLAEAGRVSLSAQSLGEWAPGLETPLNAYAYPRLQLSLRGAPWAEGTLLRLDDGWAV 289 Query: 299 RITDRIN 305 RIT RI Sbjct: 290 RITRRIP 296 >gi|289623682|ref|ZP_06456636.1| type III secretion protein hrcQb [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647644|ref|ZP_06478987.1| type III secretion protein hrcQb [Pseudomonas syringae pv. aesculi str. 2250] gi|298485950|ref|ZP_07004025.1| type III secretion system protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159536|gb|EFI00582.1| type III secretion system protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871286|gb|EGH05995.1| type III secretion protein HrcQb [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 129 Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%) Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + + L +++ R + TL ++ L G ++ A Sbjct: 39 TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHAT 98 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 L + + EL V ++IT + Sbjct: 99 LCHGEQVVAEGELVDVEGRLGLQITRLVTR 128 >gi|330957490|gb|EGH57750.1| type III secretion protein HrcQa [Pseudomonas syringae pv. maculicola str. ES4326] Length = 238 Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 12/90 (13%) Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235 E + + + ++ + L +TLL+ + Q E Sbjct: 114 APTEPLIGCRIQVRLDAARINARLHTTPDTLLRLLGSASW-QALKRTVDESWS------- 165 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 V I TL+ + +L+ G V+ Sbjct: 166 ----VPTPLIIGEMSLTLEQIASLRPGDVV 191 >gi|61743021|gb|AAX55241.1| EsaQ [Edwardsiella tarda] Length = 221 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 20/67 (29%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + + + + G P LS G L R+ + + Sbjct: 147 EICLLAEAGRVSLSAQSLGEWAPGLETPLNAYAYPRLQLSLRGAPWAEGTLLRLDDGWAV 206 Query: 299 RITDRIN 305 RIT RI Sbjct: 207 RITRRIP 213 >gi|188534811|ref|YP_001908608.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] gi|188029853|emb|CAO97734.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 308 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 9/106 (8%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 T+ + + + + E D L V+I+ ++ TL ++ + G Sbjct: 202 TVENQLINNRETYREEEEVLLDWTK--------LPVDIEFVLDKYTVTLAELEEITPGVA 253 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRV-GKNYTIRITDRINFDQK 309 +P + + N K EL + ++ + I Sbjct: 254 LPLKPAAEKKIKIYLNRKLFACGELVALEDGSFAVEINQVTPGSVD 299 >gi|45504754|gb|AAS66845.1| YsaQ [Sodalis glossinidius] Length = 285 Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 20/58 (34%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 ++ V ++ + L ++ L+ G V + + N + + G G Sbjct: 227 SRVPVTVEFVLEANSYPLAELDNLQPGTVFDLSENVEKNIKIFLNQQLVGHGRTGDAG 284 Score = 39.2 bits (90), Expect = 0.71, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 10/90 (11%) Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 L +P E L+ + + + + + D+V Sbjct: 116 LALPGEDLIVHVADWPKQAFPQAQTASAWLKRL-------PFELRCVLGCSRLAALDLVR 168 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCE 288 L G ++ L+ NG+ I+SC Sbjct: 169 LDTGDLLLITRP---ELHLAVNGRAIFSCH 195 >gi|229011055|ref|ZP_04168249.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048] gi|228750227|gb|EEM00059.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048] Length = 74 Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + I I K ++D++ + G + + + ++ +EI + ++ Sbjct: 5 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTENTVLIMLENEEIGTGKILTKNGK 64 Query: 296 YTIRITD 302 + I + Sbjct: 65 MYVEIVE 71 >gi|238752374|ref|ZP_04613852.1| Type III secretion system apparatus protein [Yersinia rohdei ATCC 43380] gi|238709415|gb|EEQ01655.1| Type III secretion system apparatus protein [Yersinia rohdei ATCC 43380] Length = 324 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 44/160 (27%), Gaps = 10/160 (6%) Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINM-NMTIENVASSFVLIIP--QETLLKTTLI 212 +L + L + + + + N + + P L + Sbjct: 164 WQASLVVGWSRLSLHQLQQITPGDGLRISRAAELEQGN-CWLWQMAAPQMYIKLEDGNKM 222 Query: 213 SLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 ++ N +Q +L K L + I + ++ L +GQ + Sbjct: 223 TIQQVNDDIDQLLELDIALVEKNPQKVMLDNLPQTLVMEIGRLSLPMGELTQLAVGQTLA 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + +G+ + S L +RI + Sbjct: 283 CQTHLYGEVNIRLHGQSVGSGSLLSCEGELLVRIDQWLTP 322 >gi|326430843|gb|EGD76413.1| hypothetical protein PTSG_07532 [Salpingoeca sp. ATCC 50818] Length = 795 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 1/57 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + + LK+++ L VI R++ ++ + ++ Sbjct: 358 THVSSSALASCAHLGSAAADLKELMELSP-DVIVLDDRKQDPLVVKCPQRTVFLARY 413 >gi|167905067|ref|ZP_02492272.1| hypothetical protein BpseN_22674 [Burkholderia pseudomallei NCTC 13177] Length = 83 Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL + + ++ DV+ L+ G V+P A + + ++++ + Sbjct: 17 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTASIAEHNGKL 74 Query: 297 TI 298 + Sbjct: 75 CL 76 >gi|40889181|pdb|1O9Y|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Hrcqb Protein From Pseudomonas Syringae Pv. Phaseolicola gi|40889182|pdb|1O9Y|B Chain B, Crystal Structure Of The C-Terminal Domain Of The Hrcqb Protein From Pseudomonas Syringae Pv. Phaseolicola gi|40889183|pdb|1O9Y|C Chain C, Crystal Structure Of The C-Terminal Domain Of The Hrcqb Protein From Pseudomonas Syringae Pv. Phaseolicola gi|40889184|pdb|1O9Y|D Chain D, Crystal Structure Of The C-Terminal Domain Of The Hrcqb Protein From Pseudomonas Syringae Pv. Phaseolicola Length = 84 Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 26/73 (35%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 L +++ R + TL ++ L G ++ A L + + EL V Sbjct: 11 ALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVE 70 Query: 294 KNYTIRITDRINF 306 ++IT + Sbjct: 71 GRLGLQITRLVTR 83 >gi|168026410|ref|XP_001765725.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683151|gb|EDQ69564.1| predicted protein [Physcomitrella patens subsp. patens] Length = 4165 Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 4/121 (3%) Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 E + + + I + E ++ + E + T ++ Sbjct: 2076 EPAVIRTFVGGIRKEETSAAGVGAGLLLDEESPSTETNIETAEQEPAEEIIETTALDRDD 2135 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 + +P L + N D + +I+ R+ L K Sbjct: 2136 FDQ----HECMPVILRLAEHVHVKFGANYQPGVMPDWMKSLHATLDNAATHINVRLFLAK 2191 Query: 251 T 251 Sbjct: 2192 V 2192 >gi|238897369|ref|YP_002923046.1| type III secretion system protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465124|gb|ACQ66898.1| type III secretion system protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 320 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 5/96 (5%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNV-----NIDTRINLKKTTLKDVVTLKIGQVIP 266 + S ++ + S D+I F + ++++ + I ++D+ L +G+ + Sbjct: 220 KAPSDEDAPDASSPDVIPEFEEEPKKISLNEFTQTLVMEIGRINIPIQDLNQLFVGKTLN 279 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ NG++I S L +RI Sbjct: 280 CKTSFYGEVMIRLNGRKIGSGNLLNCDGELIVRIEQ 315 >gi|126698113|ref|YP_001087010.1| chemotaxis protein CheC [Clostridium difficile 630] gi|115249550|emb|CAJ67367.1| Chemotaxis protein CheY-P phosphatase CheC [Clostridium difficile] Length = 205 Score = 40.0 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 16/206 (7%), Positives = 54/206 (26%), Gaps = 18/206 (8%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 + L +G + ++ +V++ + +++ + Sbjct: 1 MINYLELDDVHIDALREIGNIGSGNAITALASMINSNVEVLIPMVKILEYNEATNLLGGP 60 Query: 81 FVFSQASLSSWSSNF----FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 L + ++ +L +L + ++ +E K Sbjct: 61 ENKVVCILLDMKGDINGMFMFLLDESITQLMLSSLFNKEEAFLDEIE-----AIEISAIK 115 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFY-------DIDYLKKNTNRLSNEFVTTIN--MN 187 +++ I++ + ++ + + + V I Sbjct: 116 EIGNIMASSYVNAIASMLNMTISVSIPDICIDMVGAVLNVPMIRFSDVGDKVLFIENKFK 175 Query: 188 MTIENVASSFVLIIPQETLLKTTLIS 213 M+ S ++I +L K + Sbjct: 176 MSDNYFTSHILMIPEMSSLKKILVRL 201 >gi|213968262|ref|ZP_03396406.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato T1] gi|301381809|ref|ZP_07230227.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato Max13] gi|302062000|ref|ZP_07253541.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato K40] gi|302135082|ref|ZP_07261072.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926900|gb|EEB60451.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato T1] Length = 238 Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%) Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 E + + + + L ETLL + Q + + E Sbjct: 116 AELTVGCRIQVRLADQQVHAHLHATPETLLTLLRSAPW-QARLKPLDERWS--------- 165 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + TL+ + +L+ G V+ Sbjct: 166 --ITTPLILGELSLTLEQLASLRPGDVL 191 >gi|188586046|ref|YP_001917591.1| CheC, inhibitor of MCP methylation [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350733|gb|ACB85003.1| CheC, inhibitor of MCP methylation [Natranaerobius thermophilus JW/NM-WN-LF] Length = 212 Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 50/203 (24%), Gaps = 14/203 (6%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ---ASL 88 I LG + + + + ++ F + + Sbjct: 11 IDILKELGNIGAGNATTALSQFLGKSIKMTVPEVNILPFEEVPEVVGGPEELVAGVYMRI 70 Query: 89 SSWS-SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + L++ LLG + ++ L +E+ T ++ Sbjct: 71 EGEAPGSLMLLLKQEDALKLIDVLLG-RDSSQEKVGTADLDDIEQSALMETGNIVANSYL 129 Query: 148 QCIST--TQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFV- 198 ++ E P++ L +E V I E Sbjct: 130 NSLADMTKMEVGPSVPAISVDMAGAILEVILFQVDEEISEHVILIGTEFAYEGNTIRGHF 189 Query: 199 LIIPQETLLKTTLISLSSQNKSE 221 +IP + SL Sbjct: 190 FLIPDNESFPKIIKSLGFDYDDS 212 >gi|146296305|ref|YP_001180076.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409881|gb|ABP66885.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 205 Score = 39.6 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 34/150 (22%), Gaps = 9/150 (6%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI---IHSFKENFVFSQASLS 89 + LG + + +D+ + + + + V ++ Sbjct: 14 DVLRELGNIGTGNAISALAMMIGRRIDMKVPVVKMVDLKEVPEILGGAEIPVVGILLNVE 73 Query: 90 S-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + S L+ LLG S + +EK ++ Sbjct: 74 GDIDGFIMLVMSQASAHILVNMLLGTSLNGYS-----EFTDIEKSALTEIGNILAGAYLT 128 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 +++ + + Sbjct: 129 ALASLTGFKMIQSVPQLAEDMAGAILSFPA 158 >gi|330872916|gb|EGH07065.1| type III secretion protein HrcQa [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 238 Score = 39.6 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%) Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 E + + + + L ETLL + Q + + E Sbjct: 116 AELTVGCRIQVRLADQQIHAHLHATPETLLTLLRSAPW-QARLKPLDERWS--------- 165 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + TL+ + +L+ G V+ Sbjct: 166 --ITTPLILGELSLTLEQLASLRPGDVL 191 >gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 125 Score = 39.6 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%) Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + K TL ++ + Q++ + + ANG + + EL ++ + I + + Sbjct: 1 VLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDTLGVEIHEWL 60 Query: 305 NF 306 + Sbjct: 61 SE 62 >gi|312972917|ref|ZP_07787090.1| surface presentation of antigens spaO domain protein [Escherichia coli 1827-70] gi|310332859|gb|EFQ00073.1| surface presentation of antigens spaO domain protein [Escherichia coli 1827-70] Length = 81 Score = 39.6 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 22/70 (31%) Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 L V I+ + K L ++ L ++ L + + NG EL Sbjct: 1 MINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRITSLLSESEKNIEIRVNGALTGYGELV 60 Query: 291 RVGKNYTIRI 300 V + I Sbjct: 61 EVDDKLGVEI 70 >gi|1483321|emb|CAA68097.1| HrcQb protein [Pantoea agglomerans] Length = 108 Score = 39.6 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 L ++++ R + TL ++ L++G+++ + A L I EL V Sbjct: 31 IALLPLSLEVRCGRTRLTLGELQQLQLGRILTLDNMTPGEAGLYHGDTLIARGELVDV 88 >gi|153005188|ref|YP_001379513.1| cell surface receptor IPT/TIG domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028761|gb|ABS26529.1| cell surface receptor IPT/TIG domain protein [Anaeromyxobacter sp. Fw109-5] Length = 12684 Score = 39.6 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 29/259 (11%), Positives = 75/259 (28%), Gaps = 26/259 (10%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENF--VFSQASLSSWSSNFFIGCSNNLVITL-LENLLG 113 VD++ + ++ + + ++LS ++ NL + G Sbjct: 3125 MVDVAVAGRTVVTSTALVDQDAHPVKGLMTVSALSDAMTDAKPVVRANLSAAADVGIAAG 3184 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQIS---AVLNQCIS-TTQESSPNLEDFYDIDYL 169 + P+ S L + + ++ L+ +S L + Sbjct: 3185 GAVALHPKSGAGPASVAGYVLPRLLVTGMTPPDGALDVALSTPDLAIEVELSAPVTLASA 3244 Query: 170 KKNTNRLSNEFVT--TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-----QNKSEN 222 + N + + + + + P E L L+ + Sbjct: 3245 QANVVLREQDPAIGPVVEATIEVGDRRIYVR---PVEELRPARAYFLTVGTGLETDAQLP 3301 Query: 223 QSEDLIDPFARKTYQLNVNIDTRI--------NLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++ F + + I + + ++ + ++ G + F RE T Sbjct: 3302 LERRVVSSFRTRAVDAPLPIVSDVVPSAGPADGGTTVSIS-ALNVQEGARVFFSDREATE 3360 Query: 275 AILSANGKEIYSCELGRVG 293 + A+G+ +G +G Sbjct: 3361 VQVLADGRVSAKTPMGVLG 3379 >gi|330963053|gb|EGH63313.1| type III secretion protein HrcQa [Pseudomonas syringae pv. actinidiae str. M302091] Length = 238 Score = 39.2 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%) Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 E + + + + L ETLL + Q + + E Sbjct: 116 AELTVGCRIQVRLADQQIHAHLHATPETLLTLLRSAPW-QARLKPLDERWS--------- 165 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + TL+ + +L+ G V+ Sbjct: 166 --ITTPLILGELSLTLEQLTSLRPGDVL 191 >gi|221640809|ref|YP_002527071.1| Surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides KD131] gi|221161590|gb|ACM02570.1| Surface presentation of antigens (SPOA) protein precursor [Rhodobacter sphaeroides KD131] Length = 51 Score = 38.9 bits (89), Expect = 0.93, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%) Query: 265 IPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITDRIN 305 +P R L + I EL G +R+T+ N Sbjct: 2 LPLDRRVDDPVELYVGDRLIGRGELTELEGEQAGQLAVRLTEVAN 46 >gi|325186837|emb|CCA21382.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 1749 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 50/160 (31%), Gaps = 16/160 (10%) Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK--KNTN 174 + +RS + L + TI + + E + + + + + Sbjct: 351 RFLSSSPSRSEHYAKLILGQATIERAIGNHSDAWELVLEFLQRFPEIFGVGNVDQYFDVA 410 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS---EDLI--- 228 + A++F +I+P +LL T +++ S +N + Sbjct: 411 VRPR---VLAQIRAGFHGEAANFRMILPFVSLLPTKILAKSQKNSQLIVDILQQFWQFLC 467 Query: 229 DPFARKTYQLNVNIDTRINLKKTTL-----KDVVTLKIGQ 263 + Q+ ++ + ++ ++ + L G Sbjct: 468 KNGREREKQVALSSLFELLTASMSIFVLNDREELVLSFGD 507 >gi|330894463|gb|EGH27124.1| type III secretion protein HrcQb [Pseudomonas syringae pv. mori str. 301020] Length = 130 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 2/102 (1%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + S +E + L +++ R + TL ++ L G + Sbjct: 28 EEEEDGEPSGYATAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTI 87 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + A L + EL V ++IT + Sbjct: 88 LEVTGISPGHATLCHGEQVGAEGELVDVEGRLGLQITRLVTR 129 >gi|238927438|ref|ZP_04659198.1| chemotaxis protein CheC [Selenomonas flueggei ATCC 43531] gi|238884720|gb|EEQ48358.1| chemotaxis protein CheC [Selenomonas flueggei ATCC 43531] Length = 213 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 6/152 (3%), Positives = 26/152 (17%), Gaps = 9/152 (5%) Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84 + + +G + + ++++ + + Sbjct: 14 AALSEAQLDVLREIGNVGAGNSATALSRLIKYRIEMNVPHVALVPIEEVPEFVGGPELVV 73 Query: 85 QASLSSWSS----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 N L++ L G +++ Sbjct: 74 AGIFLRVYGKAPSNILFLIPRESAFALVDTLYGRERGATS-----EFDLMDESALMEIGN 128 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 ++ + S + Sbjct: 129 ILAGSYLNAFYSFTGISMLPSVPALAVDMAGA 160 >gi|237800003|ref|ZP_04588464.1| type III secretion protein HrcQa [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022858|gb|EGI02915.1| type III secretion protein HrcQa [Pseudomonas syringae pv. oryzae str. 1_6] Length = 238 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%) Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 E V + + + + L +TL+ + + Sbjct: 116 AEPVVGCRIQVRLGDQRVHAHLHATPQTLITLLRSAQWQARQQP---------LDESLS- 165 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265 VNI + TL+ + +L+ G V+ Sbjct: 166 --VNIPLIVGELSLTLEQLASLRPGDVV 191 >gi|304392513|ref|ZP_07374453.1| hypothetical protein R2A130_2112 [Ahrensia sp. R2A130] gi|303295143|gb|EFL89503.1| hypothetical protein R2A130_2112 [Ahrensia sp. R2A130] Length = 291 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 22/217 (10%), Positives = 52/217 (23%), Gaps = 24/217 (11%) Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + L L G + L+ ++L + Sbjct: 69 ILATEP-DCGLTFTLDATAQAICLATLTGTKTVGSSHNIDGPLT---RELIIAIAKSVVG 124 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV----TTINMNMTIENVASSFVLI 200 T SP + + + + + + + E V L Sbjct: 125 AFALASKITLPQSPVWKSQDTDSAKSGSQSVVLGIAIPQKRSAALLKQEFETVLGRITLN 184 Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 I + + K+ Q +++ ++ +L + L+ Sbjct: 185 IDARLMK--VETPSAFIAKATTQD---------AVLTSEIDLRVTATARRMSLLSIGELQ 233 Query: 261 IGQVIPFLHREKTCAILSANGK--EIYSCELGRVGKN 295 +G VI + A+ K + + +V Sbjct: 234 VGDVIGL---PDDKLSVRASTKDGPLLEGTMVQVNGQ 267 >gi|288871046|ref|ZP_06116175.2| putative metallophosphoesterase [Clostridium hathewayi DSM 13479] gi|288864972|gb|EFC97270.1| putative metallophosphoesterase [Clostridium hathewayi DSM 13479] Length = 686 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 5/69 (7%) Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL- 289 + L DV L+ + I+ NGK +Y ++ Sbjct: 355 LKHYIDDTKTAVPAYFFRTDIYLNDVSDLEA---LEAEIAYDDAVIVYINGKNVYEGQVP 411 Query: 290 -GRVGKNYT 297 G KN Sbjct: 412 EGGYDKNLA 420 >gi|284164244|ref|YP_003402523.1| chemotaxis protein CheC [Haloterrigena turkmenica DSM 5511] gi|284013899|gb|ADB59850.1| CheC, inhibitor of MCP methylation [Haloterrigena turkmenica DSM 5511] Length = 418 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/161 (6%), Positives = 35/161 (21%), Gaps = 8/161 (4%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 LL RL G + + + + K +D + I Sbjct: 196 ALLDRLRTSGGIEYDKLDGFDRMAERGAEEVAKTATTLTGIDTSVEIRRLNFVSLEAIPE 255 Query: 76 SFKENFVFSQ-ASLSSW-SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 + + S +++ + ++ + Sbjct: 256 QVADQKLVGVAFEFDGMPSGYLLFLFDEESAHEIVDAM------VPMEVDEDGFGEMGTS 309 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN 174 K +++ + +++ + I + Sbjct: 310 AIKELGNIMASGFLDGWANVLDTTIDHSTPEFIHDMGAAAV 350 >gi|169234958|ref|NP_034209.2| desmoglein-1-alpha precursor [Mus musculus] gi|60416372|sp|Q61495|DSG1A_MOUSE RecName: Full=Desmoglein-1-alpha; Short=Desmoglein-1; Short=Dsg1-alpha; AltName: Full=DG1; AltName: Full=DGI; AltName: Full=Desmosomal glycoprotein I; Flags: Precursor gi|148664530|gb|EDK96946.1| mCG140885 [Mus musculus] gi|159155868|gb|AAI54411.1| Desmoglein 1 alpha [Mus musculus] Length = 1057 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 22/215 (10%), Positives = 52/215 (24%), Gaps = 29/215 (13%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P + LL +G S +G + K DIS Sbjct: 724 ADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIGEDLDESFLDTLGPKFKKLADISLGK 783 Query: 65 CQSGKFSHIIHSFKENFV--FSQASLSSWSSNFFIGCSNNLVITLL---ENLLGASHETI 119 + + S+ + S + T + Sbjct: 784 -EIDSYPDSDPSWPPQSTEPMCPQHTEPL-GSGHPPISPHFGTTTVISENAYHSGPGVQH 841 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 P L + + +T+ P++ ++ +N + E Sbjct: 842 PVPIPDPLGYGNVTV------------RESYTTSGTLKPSV----HFHDNQQASNVVVTE 885 Query: 180 FVTT------INMNMTIENVASSFVLIIPQETLLK 208 V ++ + I ++ +I+ + + Sbjct: 886 RVVGPISGADLHGMLEIPDLRGGANVIVTERVIAP 920 >gi|315281354|ref|ZP_07869994.1| flagellar motor switch protein [Listeria marthii FSL S4-120] gi|313614993|gb|EFR88497.1| flagellar motor switch protein [Listeria marthii FSL S4-120] gi|328475657|gb|EGF46406.1| flagellar motor switch domain protein [Listeria monocytogenes 220] Length = 54 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + D+ L IG V+ + + + K++ E + +N+ I I++ Sbjct: 1 MPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 53 >gi|255028845|ref|ZP_05300796.1| flagellar motor switch protein [Listeria monocytogenes LO28] Length = 85 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 18/37 (48%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 R+ + VN+ R+ K+ + D+ L IG V+ Sbjct: 28 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEK 64 >gi|257487232|ref|ZP_05641273.1| type III secretion component protein HrcQa [Pseudomonas syringae pv. tabaci ATCC 11528] gi|238577789|gb|ACR46700.1| HrcQa [Pseudomonas syringae pv. tabaci] gi|331009154|gb|EGH89210.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 238 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%) Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + + L +TLL+ + Q ++ E V Sbjct: 122 CRVQIQRGGEQLHAHLHATPDTLLRLLQSAPW-QARTRTVDESWS-----------VASP 169 Query: 244 TRINLKKTTLKDVVTLKIGQVI 265 I TL+ + +L+ G V+ Sbjct: 170 LIIGEMSLTLEQIASLRPGDVV 191 >gi|330984966|gb|EGH83069.1| type III secretion protein HrcQa [Pseudomonas syringae pv. lachrymans str. M301315] Length = 238 Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%) Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + + L +TLL+ + Q ++ E V Sbjct: 122 CRVQIQRGGEQLHAHLHATPDTLLRLLQSAPW-QARTRTVDESWS-----------VASP 169 Query: 244 TRINLKKTTLKDVVTLKIGQVI 265 I TL+ + +L+ G V+ Sbjct: 170 LIIGEMSLTLEQIASLRPGDVV 191 >gi|218672164|ref|ZP_03521833.1| flagellar motor switch protein [Rhizobium etli GR56] Length = 142 Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 3/42 (7%), Positives = 13/42 (30%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + +++ + + + ++ L G I + Sbjct: 101 EMIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEP 142 >gi|224438105|ref|ZP_03659040.1| flagellum-specific ATP synthase [Helicobacter cinaedi CCUG 18818] gi|313144545|ref|ZP_07806738.1| flagellum-specific ATP synthase FliI [Helicobacter cinaedi CCUG 18818] gi|313129576|gb|EFR47193.1| flagellum-specific ATP synthase FliI [Helicobacter cinaedi CCUG 18818] Length = 472 Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 16/174 (9%), Positives = 55/174 (31%), Gaps = 6/174 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K K+ + +G + +P+ + ++ D+ + + S ++ + + A Sbjct: 218 AKAPIKVIALIGER-GREVPEFIYKNLNNDLTNTILVVATSDDSPLMRKYGAFSAMAIAE 276 Query: 88 -LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 S ++ + + + +G + P L + + + Sbjct: 277 YFKSLGNDVLFIMDSVTRFAMAQREIGLALGEPPTSKG--YPPSVLTLLPQLMERAGK-- 332 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 + + L + D+ + +R + +N ++T + ++ Sbjct: 333 EDSVGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLNRDLTDMGIYPPINIL 386 >gi|150021311|ref|YP_001306665.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis BI429] gi|149793832|gb|ABR31280.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis BI429] Length = 205 Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 23/196 (11%), Positives = 54/196 (27%), Gaps = 20/196 (10%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN----FVFSQASL 88 + + +G + + V+IS S + S+I F+ Sbjct: 11 DLLNEIGNIGTGNAATALSMMIGRKVEISVPSTKVVPISNIPFIFENPEEIVCAVKMKMQ 70 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + ++ V + + L G + I L + K + Sbjct: 71 EDVEGEILLILNSITVKEITKLLTGIELQDITT-----LDEFSVSMLKEIGNIMCGSYVT 125 Query: 149 CISTTQESSPNLEDFYDIDYLKKN-------TNRLSNEFVTTINMNMTIENV----ASSF 197 +S N E + + +++ I ++ IE + Sbjct: 126 ALSGFTNFFINPEPPEIAVDMISAILAEVSLQVSKTEDYILLIETSIEIEGIDKMLTGYL 185 Query: 198 VLIIPQETLLKTTLIS 213 +L+ +++L K Sbjct: 186 LLLPDEQSLKKILEKL 201 >gi|33352148|emb|CAD91923.1| putative Na P-type ATPase [Physcomitrella patens] Length = 1058 Score = 37.3 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229 ++ + VL+I T+ KT + S Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 Q RI+ DV+T ++G +IP R L + + Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180 >gi|292669756|ref|ZP_06603182.1| CheC family chemotaxis protein [Selenomonas noxia ATCC 43541] gi|292648553|gb|EFF66525.1| CheC family chemotaxis protein [Selenomonas noxia ATCC 43541] Length = 207 Score = 37.3 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 7/129 (5%), Positives = 25/129 (19%), Gaps = 9/129 (6%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 + + +G + + ++++ + + Sbjct: 9 ELSEMQLDVLQEIGNVGAGNSATALSRLIQRRIEMNVPQVALVPIEDVPEFVGGPELVVV 68 Query: 86 ASLSSWSS----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 N L++ LLG L +++ Sbjct: 69 GIFLRVYGKAPSNILFLIPRESAFALVDTLLGRERGETT-----ELDAMDESALMEIGNI 123 Query: 142 ISAVLNQCI 150 ++ Sbjct: 124 LAGSYLNAF 132 >gi|33352140|emb|CAD91919.1| putative Na P-type ATPase [Physcomitrella patens] Length = 1058 Score = 37.3 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229 ++ + VL+I T+ KT + S Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 Q RI+ DV+T ++G +IP R L + + Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180 >gi|168055850|ref|XP_001779936.1| Na+ P-type-ATPase [Physcomitrella patens subsp. patens] gi|162668650|gb|EDQ55253.1| Na+ P-type-ATPase [Physcomitrella patens subsp. patens] Length = 1058 Score = 37.3 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229 ++ + VL+I T+ KT + S Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 Q RI+ DV+T ++G +IP R L + + Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180 >gi|257388203|ref|YP_003177976.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM 12286] gi|257170510|gb|ACV48269.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM 12286] Length = 197 Score = 37.3 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 10/125 (8%), Positives = 31/125 (24%), Gaps = 4/125 (3%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE--NFVFSQASLSSWSSNFFIGCSNNLV 104 + ++ ++ T I + S L + Sbjct: 22 ANHLSQMTGMETEMEITKINFIDIPDIKTHIGDERQIGISIRMLEPPHGYILFLFNAENA 81 Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 L ++G ET + +E+ + +++ + E++ ++ Sbjct: 82 KKLASGMIGDMGETSDATDG--FTDMERSAIQEIGNIMTSGFIDGWANVLETTIDISTPN 139 Query: 165 DIDYL 169 Sbjct: 140 FTFGP 144 >gi|153954746|ref|YP_001395511.1| hypothetical protein CKL_2128 [Clostridium kluyveri DSM 555] gi|219855210|ref|YP_002472332.1| hypothetical protein CKR_1867 [Clostridium kluyveri NBRC 12016] gi|146347604|gb|EDK34140.1| CheC [Clostridium kluyveri DSM 555] gi|219568934|dbj|BAH06918.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 198 Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 3/84 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + + + ++ VDI+ F I S + + + + Sbjct: 12 DALREVVNIGTGNAATALSQLINKKVDITVPDVNIVPFDDIFTSIEGDEIVVGVIVRILG 71 Query: 93 ---SNFFIGCSNNLVITLLENLLG 113 N + L+ L+G Sbjct: 72 DAPGNILFIFEKETALELISMLMG 95 >gi|313895811|ref|ZP_07829365.1| putative chemotaxis protein CheC [Selenomonas sp. oral taxon 137 str. F0430] gi|312975236|gb|EFR40697.1| putative chemotaxis protein CheC [Selenomonas sp. oral taxon 137 str. F0430] Length = 207 Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 15/173 (8%), Positives = 34/173 (19%), Gaps = 16/173 (9%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + +G + + ++++ K + + Sbjct: 16 DVLQEIGNVGAGNSATALSRLIQHRIEMNVPHVALVKIEDVPEFVGGPELVVVGIFLRVY 75 Query: 93 S----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N L + LLG P L +++ ++ Sbjct: 76 GKAPSNILFLIPRESAFALADTLLGRERGETP-----ELDAMDESALMEIGNILAGSYLN 130 Query: 149 CISTTQESSPNLEDFY-------DIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 T S I + + I N E+ Sbjct: 131 AFYTFTGMSMLPSVPALAVDMAGAILNVVLVQLGEMGDHALLIETNFQAEDRT 183 >gi|237734782|ref|ZP_04565263.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382110|gb|EEO32201.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 865 Score = 36.9 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 1/104 (0%) Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 + V + I V + ++ I + Q QS + + + + + Sbjct: 58 DFLVIILIFAAIISGVLGDIESTLVILIVIMINAILGTVQTVKAEQSLNSLKELSSPSAK 117 Query: 238 LNVNIDT-RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 + + I K+ T+ D V L+ G IP R A + + Sbjct: 118 VLRDGKVIEIPSKEVTIGDEVYLEAGDFIPADGRILENASMKVD 161 >gi|33352150|emb|CAD91924.1| putative Na P-type ATPase [Physcomitrella patens] Length = 977 Score = 36.9 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229 ++ + VL+I T+ KT + S Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 Q RI+ DV+T ++G +IP R L + + Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180 >gi|33352142|emb|CAD91920.1| putative Na P-type ATPase [Physcomitrella patens] Length = 977 Score = 36.9 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229 ++ + VL+I T+ KT + S Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 Q RI+ DV+T ++G +IP R L + + Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180 >gi|33352138|emb|CAD91918.1| putative Na P-type ATPase [Physcomitrella patens] gi|33352146|emb|CAD91922.1| putative Na P-type ATPase [Physcomitrella patens] Length = 938 Score = 36.9 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229 ++ + VL+I T+ KT + S Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 Q RI+ DV+T ++G +IP R L + + Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180 >gi|330507600|ref|YP_004384028.1| PIN domain-containing protein [Methanosaeta concilii GP-6] gi|328928408|gb|AEB68210.1| PIN domain protein [Methanosaeta concilii GP-6] Length = 605 Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%) Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ +S + ++ +GR G IRI ++ +K Sbjct: 541 ILWLDGMAGESVDVSVGDEPAFTATVGRRGD---IRIAKSSEMAKRIIKKM 588 >gi|320529407|ref|ZP_08030495.1| putative chemotaxis protein CheC [Selenomonas artemidis F0399] gi|320138373|gb|EFW30267.1| putative chemotaxis protein CheC [Selenomonas artemidis F0399] Length = 207 Score = 36.5 bits (83), Expect = 4.6, Method: Composition-based stats. Identities = 15/173 (8%), Positives = 34/173 (19%), Gaps = 16/173 (9%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + +G + + ++++ K + + Sbjct: 16 DVLQEIGNVGAGNSATALSRLIQHRIEMNVPHVALVKIEDVPEFVGGPELVVVGIFLRVY 75 Query: 93 S----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N L + LLG P L +++ ++ Sbjct: 76 GKAPSNILFLIPQESAFALADTLLGRERGETP-----ELDAMDESALMEIGNILAGSYLN 130 Query: 149 CISTTQESSPNLEDFY-------DIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 T S I + + I N E+ Sbjct: 131 AFYTFTGMSMLPSVPALAVDMAGAILNVVLVQLGEMGDHALLIETNFQAEDRT 183 >gi|167755813|ref|ZP_02427940.1| hypothetical protein CLORAM_01329 [Clostridium ramosum DSM 1402] gi|167704752|gb|EDS19331.1| hypothetical protein CLORAM_01329 [Clostridium ramosum DSM 1402] Length = 865 Score = 36.5 bits (83), Expect = 4.6, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 1/104 (0%) Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 + V + I V + ++ I + Q QS + + + + + Sbjct: 58 DFLVIILIFAAIISGVLGDIESTLVILIVITINAILGTVQTVKAEQSLNSLKELSSPSAK 117 Query: 238 LNVNIDT-RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 + + I K+ T+ D V L+ G IP R A + + Sbjct: 118 VLRDGKVIEIPSKEVTIGDEVYLEAGDFIPADGRILENASMKVD 161 >gi|257386983|ref|YP_003176756.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM 12286] gi|257169290|gb|ACV47049.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM 12286] Length = 211 Score = 36.5 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 9/160 (5%), Positives = 39/160 (24%), Gaps = 12/160 (7%) Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSSWSSNFFIGCSNNLV 104 + +D + + + + + + Sbjct: 25 ADHLSQLTGVDASVRTSQINFLDIGDVKTHLGNDERIGIYVELTEAPGGYVLFVLDPDHG 84 Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE-----SSPN 159 L ++G + S +E+ + +++ + + ++P+ Sbjct: 85 KRLAGQMMGGIQG-----ADEGFSEMEESALQEIGNIMTSGFIDGWANVLDATIDMTTPS 139 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 L + ++ V ++ ++ E + Sbjct: 140 LLVDDTATIIDSMGGWPDSDLVFVVDSHIVAEGADIDMTV 179 >gi|323186702|gb|EFZ72024.1| flagellar motor switch protein fliN domain protein [Escherichia coli RN587/1] Length = 39 Score = 36.5 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ V Y +RITD I ++ Sbjct: 1 ILINGYLIAQGEVVVVADKYGVRITDIITPSERM 34 >gi|292655360|ref|YP_003535257.1| taxis cluster protein CheC [Haloferax volcanii DS2] gi|291371492|gb|ADE03719.1| taxis cluster protein CheC [Haloferax volcanii DS2] Length = 395 Score = 36.5 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 10/177 (5%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK--ENFVFSQASLSS 90 + S L + + +D ++ T + G S + + F + Sbjct: 9 RTFSRLAHSGAEKAAGSLTTLAGIDTYVNVTKVELGTKSDVENEFAERDLVSVHIGFSGG 68 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + + S L++ L+ T S E +A + + Sbjct: 69 LDGHTVLAFSPESAERLVDALMPGIDATDADGELAESSLKE--VANIMLGGFIDGWADYL 126 Query: 151 STTQES-SPNLEDFYDI-----DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 TT + +P D + + N +E V + + A F L + Sbjct: 127 DTTVDITTPTYVDDENDGPLDRVDAEGFENGGDDEHVLVFRNQLEAADNAIEFDLYM 183 >gi|309806986|ref|ZP_07700968.1| copper-exporting ATPase [Lactobacillus iners LactinV 03V1-b] gi|308166606|gb|EFO68803.1| copper-exporting ATPase [Lactobacillus iners LactinV 03V1-b] Length = 698 Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%) Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V +LL L+ + K+ ++ D + A+ + ++ Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280 + V LK+G +I E A + Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239 >gi|309804631|ref|ZP_07698696.1| copper-exporting ATPase [Lactobacillus iners LactinV 09V1-c] gi|329920456|ref|ZP_08277188.1| copper-exporting ATPase [Lactobacillus iners SPIN 1401G] gi|308166023|gb|EFO68241.1| copper-exporting ATPase [Lactobacillus iners LactinV 09V1-c] gi|328936132|gb|EGG32585.1| copper-exporting ATPase [Lactobacillus iners SPIN 1401G] Length = 698 Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%) Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V +LL L+ + K+ ++ D + A+ + ++ Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280 + V LK+G +I E A + Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239 >gi|259500980|ref|ZP_05743882.1| copper-exporting ATPase [Lactobacillus iners DSM 13335] gi|259167674|gb|EEW52169.1| copper-exporting ATPase [Lactobacillus iners DSM 13335] Length = 681 Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%) Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V +LL L+ + K+ ++ D + A+ + ++ Sbjct: 138 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 194 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280 + V LK+G +I E A + Sbjct: 195 TRPVADLKVGDLIRVQAGENVPADGTIE 222 >gi|325913161|ref|ZP_08175531.1| copper-exporting ATPase [Lactobacillus iners UPII 60-B] gi|325477582|gb|EGC80724.1| copper-exporting ATPase [Lactobacillus iners UPII 60-B] Length = 690 Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%) Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V +LL L+ + K+ ++ D + A+ + ++ Sbjct: 147 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 203 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280 + V LK+G +I E A + Sbjct: 204 TRPVADLKVGDLIRVQAGENVPADGTIE 231 >gi|312871534|ref|ZP_07731627.1| copper-exporting ATPase [Lactobacillus iners LEAF 3008A-a] gi|311092929|gb|EFQ51280.1| copper-exporting ATPase [Lactobacillus iners LEAF 3008A-a] Length = 698 Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%) Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V +LL L+ + K+ ++ D + A+ + ++ Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280 + V LK+G +I E A + Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239 >gi|302190570|ref|ZP_07266824.1| copper-exporting ATPase [Lactobacillus iners AB-1] Length = 698 Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%) Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V +LL L+ + K+ ++ D + A+ + ++ Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280 + V LK+G +I E A + Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239 >gi|17228018|ref|NP_484566.1| hypothetical protein alr0522 [Nostoc sp. PCC 7120] gi|9957317|gb|AAG09315.1| hypothetical protein [Nostoc sp. PCC 7120] gi|17129867|dbj|BAB72480.1| alr0522 [Nostoc sp. PCC 7120] Length = 312 Score = 36.2 bits (82), Expect = 5.9, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + Q V ++ ++ K + LK+G I E + A + Sbjct: 29 RSRIQQLIEQGKVQVNGKVCTSKK-----INLKVGDRITLEVPEAQPLEIQAEDIPL 80 >gi|75909134|ref|YP_323430.1| ribosomal large subunit pseudouridine synthase D [Anabaena variabilis ATCC 29413] gi|75702859|gb|ABA22535.1| ribosomal large subunit pseudouridine synthase D [Anabaena variabilis ATCC 29413] Length = 312 Score = 36.2 bits (82), Expect = 6.1, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 5/57 (8%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + Q V ++ ++ K + LK+G I E L A + Sbjct: 29 RSRIQQLIEQGKVQVNGKVCTSKK-----INLKVGDRITLEVPEAQPLELQAEDIPL 80 >gi|253576153|ref|ZP_04853485.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844496|gb|EES72512.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14] Length = 315 Score = 36.2 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 6/81 (7%), Positives = 17/81 (20%), Gaps = 3/81 (3%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT---TLKDVVTLKIGQ 263 + + E + + + + + +K L G Sbjct: 12 EEKLEWVAGPADAKERIDKYAKTQLGEEFSRSQIQLWIEAGNLVVNGAPVKANYKLAEGD 71 Query: 264 VIPFLHREKTCAILSANGKEI 284 I + E + + Sbjct: 72 RIVLVIPEAEPTEIVPEDIPL 92 >gi|207109698|ref|ZP_03243860.1| flagellar motor switch protein FliY [Helicobacter pylori HPKX_438_CA4C1] Length = 164 Score = 36.2 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 19/39 (48%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + +N+ RI KK LKDVV++ IG V+ Sbjct: 126 LLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 164 >gi|118588367|ref|ZP_01545776.1| ABC transporter, ATP-binding protein [Stappia aggregata IAM 12614] gi|118439073|gb|EAV45705.1| ABC transporter, ATP-binding protein [Stappia aggregata IAM 12614] Length = 602 Score = 36.2 bits (82), Expect = 6.8, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 57/167 (34%), Gaps = 7/167 (4%) Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74 P++L + G + + + + ++ + ++ S +G++S + Sbjct: 186 PVILIPILGFGRQVRKRSRFAQDTLAEASAYASEMLGS-VRTLQAFTHESLSAGRYSDAV 244 Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + + + + ++ + + ++V L +GAS ++ LS L Sbjct: 245 NEAFQAARQAIVARAALTGFAIMVIGASIVAVL---WIGASDVFAGRITGGELSQF--LL 299 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 A A L++ +++ E ++ ++ V Sbjct: 300 YSILAAGSLAALSEVWGELSQAAGAAERLSELLEIQP-EIAAPANPV 345 >gi|51892676|ref|YP_075367.1| chemotaxis signal transduction protein [Symbiobacterium thermophilum IAM 14863] gi|51856365|dbj|BAD40523.1| chemotaxis signal transduction protein [Symbiobacterium thermophilum IAM 14863] Length = 198 Score = 35.8 bits (81), Expect = 7.9, Method: Composition-based stats. Identities = 9/150 (6%), Positives = 33/150 (22%), Gaps = 10/150 (6%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI--IHSFKENFVFS 84 + + + + + ++ + + + ++ V + Sbjct: 4 QPSQWTALEQMVTQALAES-SRSLSQMTTGEIRLDAPQLSFVPLRELPGVAGGPDHVVTA 62 Query: 85 QASL--SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142 + + L++ LLG P R L + + Sbjct: 63 VYVGIEGELQGHVILLFQPKEARALVDLLLG-----HPAGTCRELDELGRSALAEVGNIC 117 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 + I+ ++ + Sbjct: 118 GSAFMNAIADRSGLEVKPTPPVLLEDMAGA 147 >gi|303235480|ref|ZP_07322093.1| copper-exporting ATPase [Prevotella disiens FB035-09AN] gi|302484347|gb|EFL47329.1| copper-exporting ATPase [Prevotella disiens FB035-09AN] Length = 716 Score = 35.8 bits (81), Expect = 8.2, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 3/87 (3%) Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 +LL L+ + K+ ++ D + A+ + ++ Sbjct: 172 EQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIET 228 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSAN 280 + V LK+G +I E A + Sbjct: 229 RPVADLKVGDLIRVQAGENVPADGTIE 255 >gi|154174001|ref|YP_001407433.1| flagellum-specific ATP synthase [Campylobacter curvus 525.92] gi|112803229|gb|EAU00573.1| flagellar protein export ATPase FliI [Campylobacter curvus 525.92] Length = 435 Score = 35.8 bits (81), Expect = 8.2, Method: Composition-based stats. Identities = 15/171 (8%), Positives = 55/171 (32%), Gaps = 6/171 (3%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88 K+ + +G + +P+ ++ + ++D + + S ++ + S A Sbjct: 185 APIKVVALIGER-GREVPEFIEKNLGGNLDGTVIVVATSDDSSLMRKYGAFCAMSVAEYF 243 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + ++ + + + +G + P S+ L + + + + Sbjct: 244 KNQGNDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSS--LTLLPQLMERAGK--EE 299 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + L + D+ + +R + ++ +T + + Sbjct: 300 GKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINI 350 >gi|291277238|ref|YP_003517010.1| flagellum-specific ATP synthase [Helicobacter mustelae 12198] gi|290964432|emb|CBG40282.1| flagellum-specific ATP synthase [Helicobacter mustelae 12198] Length = 434 Score = 35.8 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 14/174 (8%), Positives = 54/174 (31%), Gaps = 6/174 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K K+ + +G + +P+ ++ +D +++ + + S ++ + + A Sbjct: 181 SKAPIKVVALIGER-GREVPEFIQKNLDNNLENTVIVVATSDDSALMRKYGAFSAMAVAE 239 Query: 88 LSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + + + +G + P L + + + Sbjct: 240 FFKNQGHDVLFIMDSVTRFAMAQREIGLALGEPPTSKG--YPPSVLALLPQLMERAGK-- 295 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 + + L + D+ + +R + ++ +T + ++ Sbjct: 296 EEGRGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLSRELTDFGIYPPIHIL 349 >gi|227500140|ref|ZP_03930210.1| copper-exporting ATPase [Anaerococcus tetradius ATCC 35098] gi|227217757|gb|EEI83059.1| copper-exporting ATPase [Anaerococcus tetradius ATCC 35098] Length = 697 Score = 35.8 bits (81), Expect = 8.4, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 3/87 (3%) Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 +LL L+ + K+ ++ D + A+ + ++ Sbjct: 155 EQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIET 211 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSAN 280 + V LK+G +I E A + Sbjct: 212 RPVADLKVGDLIRVQAGENVPADGTIE 238 >gi|57640572|ref|YP_183050.1| chemotaxis protein cheC [Thermococcus kodakarensis KOD1] gi|57158896|dbj|BAD84826.1| chemotaxis protein cheC [Thermococcus kodakarensis KOD1] Length = 207 Score = 35.8 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 20/186 (10%), Positives = 47/186 (25%), Gaps = 12/186 (6%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFK----ENFVFSQASL-SSWSSNFFIGCSNN 102 E + +++ + + N + + Sbjct: 24 TSLSEMVGGPIEMEPPEVEVLSRVEFLKRLTQNGISNSFVVAFDITEGLGGLTVLQFPTK 83 Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP---- 158 I L L+G + +L S + + + I+ + +L + + SP Sbjct: 84 SAINLSAALMGMDPSGMKELDEMGKSAITE-VGNILISVYTDILAKLVGEPVSLSPPKPI 142 Query: 159 -NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 +L D N + S F L+ +E+ K + Sbjct: 143 NSLYDIEKELNRPDLRNVD-KIMLFKTRFYEENIGFESFFYLVPDEESFEKLVKRLEAQV 201 Query: 218 NKSENQ 223 + + Sbjct: 202 KEEGGE 207 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.309 0.138 0.316 Lambda K H 0.267 0.0423 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,670,758,375 Number of Sequences: 14124377 Number of extensions: 51294873 Number of successful extensions: 199240 Number of sequences better than 10.0: 2892 Number of HSP's better than 10.0 without gapping: 2613 Number of HSP's successfully gapped in prelim test: 279 Number of HSP's that attempted gapping in prelim test: 193456 Number of HSP's gapped (non-prelim): 3245 length of query: 318 length of database: 4,842,793,630 effective HSP length: 139 effective length of query: 179 effective length of database: 2,879,505,227 effective search space: 515431435633 effective search space used: 515431435633 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 81 (35.8 bits)