RPSBLAST alignment for GI: 254780687 and conserved domain: PRK06666

>gnl|CDD|180651 PRK06666, fliM, flagellar motor switch protein FliM; Validated. Length = 337

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 35/221 (15%)

Query: 102 NLVITLLENLLG---ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
           +LV  +++NL G     H  +     R  +  E+++       I  +L       +E+  
Sbjct: 123 SLVFIMVDNLFGGDGRFHTKV----GREFTETEQRI-------IDRILKLAFENLKEA-- 169

Query: 159 NLEDFYDID--YLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETL---- 206
                  I+  Y++   N         NE V  ++ ++ I        + IP   +    
Sbjct: 170 -WSSVVPIEPEYVRSEVNPQFANIVSPNEIVVVVSFHIEIGGGGGMMNICIPYSMIEPIR 228

Query: 207 --LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L +      S++K +   ++L     ++  Q  V +   +   K TL +++ LK+G V
Sbjct: 229 EKLSSPYWMSDSRDKDKRWRKEL----EQQVQQAEVELVAELGEIKLTLSEILNLKVGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           IP         I+  +GK  + C+ G+      ++I + I 
Sbjct: 285 IPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIE 325