RPSBLAST alignment for GI: 254780687 and conserved domain: COG1868

>gnl|CDD|32053 COG1868, FliM, Flagellar motor switch protein [Cell motility and secretion]. Length = 332
 Score =  135 bits (342), Expect = 1e-32
 Identities = 61/324 (18%), Positives = 128/324 (39%), Gaps = 16/324 (4%)

Query: 4   QSIHKNTSPLHPI---LLARLTGKLGDKKTIEKISS--SLGYLYKKFLPKIFKEKMDLDV 58
             + +    L       +     K  D+ + E++ +   +   + + L       +   V
Sbjct: 15  SGVSEGVEELKEEDERKVKPYDFKRPDRFSKEQLRTLEIIHERFARLLTTSLSNLLRRSV 74

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D+   S     +   I S     + +  S+        +    +LV  +++ L G     
Sbjct: 75  DVEVGSVDQMTYEEFIRSLPNPTILNLFSMKPLKGTALLEFDPSLVFIMVDRLFGGDGRF 134

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             +   R L+ +E+++  + + +I   L +  +   E  P +          +      N
Sbjct: 135 PAKPEGRELTDIEQRVITKLLERILEALKEAWNAVIELEPEIVRSETNPQFAQIV--SPN 192

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTY 236
           E V  I + + I N++  F + IP   L       LSS+ +   + +D        ++  
Sbjct: 193 EIVVLITLEVEIGNLSGMFNICIPYSMLEP-IREKLSSRMQENTREKDPEWRKELRQQVQ 251

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC---AILSANGKEIYSCELGRVG 293
           ++ V ++ R+     TL++++ L++G VIP    EK       +S  GK  + C+ G+ G
Sbjct: 252 RVEVELEARLGEISLTLREILRLEVGDVIPL---EKPADDRVTVSVGGKPKFLCQYGKSG 308

Query: 294 KNYTIRITDRINFDQKSLKNFLHK 317
             Y ++I + IN +++SL   L K
Sbjct: 309 GQYAVKILELINSEEESLDELLPK 332