RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780687|ref|YP_003065100.1| flagellar C-ring protein
[Candidatus Liberibacter asiaticus str. psy62]
         (318 letters)



>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system,
           phytopathogenicity; 2.29A {Pseudomonas syringae} (A:)
          Length = 84

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                +D           L +++  R    + TL ++  L  G ++         A L  
Sbjct: 1   GAMDPQDEPPALD----SLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCH 56

Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305
             + +   EL  V     ++IT  + 
Sbjct: 57  GEQVVAEGELVDVEGRLGLQITRLVT 82


>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C-
           terminal proteolytic fragment of TM0680A, structural
           genomics, JCSG, PSI; 1.85A {Thermotoga maritima}
           (A:20-96)
          Length = 77

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +   + TLK V+    G +I           +  NGK I   E+  + +N+ +R
Sbjct: 2   LKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVR 61

Query: 300 ITDRINFDQ--KSLK 312
           IT+ ++  +  + L 
Sbjct: 62  ITEIVSPKERLELLN 76


>2j89_A Methionine sulfoxide reductase A; MSRA, poplar,
           oxidoreductase; 1.7A {Populus trichocarpa} (A:)
          Length = 261

 Score = 30.5 bits (68), Expect = 0.27
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 8/50 (16%)

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-----IDYLKKNTNR 175
           ++K AK ++ +   +LN+ I T        + FY        YL K    
Sbjct: 197 QEKAAKESLERQQKLLNRKIVTEILP---AKKFYRAEEYHQQYLAKGGRF 243


>3fo8_D Tail sheath protein GP18; mostly beta, viral structural
          protein, bacteriophage T4, viral protein; 1.80A
          {Enterobacteria phage T4} (D:1-14,D:138-267)
          Length = 144

 Score = 30.3 bits (68), Expect = 0.37
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 8  KNTSPLHPILLARLTGKLGDKKTIEKIS 35
          KN+SP+ P ++A   G+LGDK  IE +S
Sbjct: 8  KNSSPIAPGVVALYPGELGDKIEIEIVS 35


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} (F:1-76)
          Length = 76

 Score = 27.0 bits (59), Expect = 3.2
 Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 4/21 (19%)

Query: 27 DKKTIEKISSSLGYLYKKFLP 47
          +K+ ++K+ +SL    K +  
Sbjct: 18 EKQALKKLQASL----KLYAD 34


>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural
           genomics, PSI-2, protein structure initiative; 1.55A
           {Listeria innocua} (A:)
          Length = 101

 Score = 26.6 bits (59), Expect = 4.5
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR 303
           AI+S NGK I    L     N    I  +
Sbjct: 10  AIISQNGKVIREIPLTGHKGNEQFTIKGK 38


>1mtp_A Serine proteinase inhibitor (serpin), chain A; structural
           genomics, protease inhibitor; 1.50A {Thermobifida fusca}
           (A:1-170,A:257-323)
          Length = 237

 Score = 26.7 bits (58), Expect = 4.8
 Identities = 11/120 (9%), Positives = 26/120 (21%), Gaps = 7/120 (5%)

Query: 70  FSHIIHSFK-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
              +  +      ++S  S++        G        L   L       +  L      
Sbjct: 18  HRRLAEAVPDGEVIWSPYSVACALGVLAAGARATTRTELTTLLGTDPAPLLAALDRAVTD 77

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
           + +              +             + D  D D    +          T+N ++
Sbjct: 78  SPDLASRTVLWVSADVPVR------SSFRATMHDRPDSDVRTADFRTNPEGVRATVNADI 131


>1hle_A Horse leukocyte elastase inhibitor; hydrolase
           inhibitor(serine proteinase); 1.95A {Equus caballus}
           (A:1-202,A:272-345)
          Length = 275

 Score = 26.3 bits (57), Expect = 5.0
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 2/121 (1%)

Query: 70  FSHIIHSFK-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           F  +  S    N   S  S+SS  +  F+G   N    + + L   + E I   +    +
Sbjct: 16  FRALNESDPTGNIFISPLSISSALAMIFLGTRGNTAAQVSKALYFDTVEDIHSRFQSLNA 75

Query: 129 TVEKKLAKRTIAQISAVL-NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
            + K  A   +   + +   +  +   +   + +  Y  +    +  +   +    IN  
Sbjct: 76  DINKPGAPYILKLANRLYGEKTYNFLADFLASTQKMYGAELASVDFQQAPEDARKEINEW 135

Query: 188 M 188
           +
Sbjct: 136 V 136


>2kpp_A LIN0431 protein; solution structure, structural genomics,
           PSI-2, protein structure initiative, northeast
           structural genomics consortium, NESG; NMR {Listeria
           innocua} (A:)
          Length = 114

 Score = 26.3 bits (58), Expect = 6.2
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR 303
           AI+S NGK I    L     N    I  +
Sbjct: 10  AIISQNGKVIREIPLTGHKGNEQFTIKGK 38


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,145,609
Number of extensions: 89076
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 18
Length of query: 318
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 230
Effective length of database: 1,981,209
Effective search space: 455678070
Effective search space used: 455678070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)