RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] (318 letters) >1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} (A:) Length = 84 Score = 58.1 bits (141), Expect = 1e-09 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 4/86 (4%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 +D L +++ R + TL ++ L G ++ A L Sbjct: 1 GAMDPQDEPPALD----SLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCH 56 Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305 + + EL V ++IT + Sbjct: 57 GEQVVAEGELVDVEGRLGLQITRLVT 82 >1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} (A:20-96) Length = 77 Score = 56.5 bits (137), Expect = 4e-09 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + + TLK V+ G +I + NGK I E+ + +N+ +R Sbjct: 2 LKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVR 61 Query: 300 ITDRINFDQ--KSLK 312 IT+ ++ + + L Sbjct: 62 ITEIVSPKERLELLN 76 >2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} (A:) Length = 261 Score = 30.5 bits (68), Expect = 0.27 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 8/50 (16%) Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-----IDYLKKNTNR 175 ++K AK ++ + +LN+ I T + FY YL K Sbjct: 197 QEKAAKESLERQQKLLNRKIVTEILP---AKKFYRAEEYHQQYLAKGGRF 243 >3fo8_D Tail sheath protein GP18; mostly beta, viral structural protein, bacteriophage T4, viral protein; 1.80A {Enterobacteria phage T4} (D:1-14,D:138-267) Length = 144 Score = 30.3 bits (68), Expect = 0.37 Identities = 14/28 (50%), Positives = 20/28 (71%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKIS 35 KN+SP+ P ++A G+LGDK IE +S Sbjct: 8 KNSSPIAPGVVALYPGELGDKIEIEIVS 35 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} (F:1-76) Length = 76 Score = 27.0 bits (59), Expect = 3.2 Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 4/21 (19%) Query: 27 DKKTIEKISSSLGYLYKKFLP 47 +K+ ++K+ +SL K + Sbjct: 18 EKQALKKLQASL----KLYAD 34 >3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua} (A:) Length = 101 Score = 26.6 bits (59), Expect = 4.5 Identities = 10/29 (34%), Positives = 12/29 (41%) Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR 303 AI+S NGK I L N I + Sbjct: 10 AIISQNGKVIREIPLTGHKGNEQFTIKGK 38 >1mtp_A Serine proteinase inhibitor (serpin), chain A; structural genomics, protease inhibitor; 1.50A {Thermobifida fusca} (A:1-170,A:257-323) Length = 237 Score = 26.7 bits (58), Expect = 4.8 Identities = 11/120 (9%), Positives = 26/120 (21%), Gaps = 7/120 (5%) Query: 70 FSHIIHSFK-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + ++S S++ G L L + L Sbjct: 18 HRRLAEAVPDGEVIWSPYSVACALGVLAAGARATTRTELTTLLGTDPAPLLAALDRAVTD 77 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 + + + + D D D + T+N ++ Sbjct: 78 SPDLASRTVLWVSADVPVR------SSFRATMHDRPDSDVRTADFRTNPEGVRATVNADI 131 >1hle_A Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} (A:1-202,A:272-345) Length = 275 Score = 26.3 bits (57), Expect = 5.0 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 2/121 (1%) Query: 70 FSHIIHSFK-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 F + S N S S+SS + F+G N + + L + E I + + Sbjct: 16 FRALNESDPTGNIFISPLSISSALAMIFLGTRGNTAAQVSKALYFDTVEDIHSRFQSLNA 75 Query: 129 TVEKKLAKRTIAQISAVL-NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + K A + + + + + + + + Y + + + + IN Sbjct: 76 DINKPGAPYILKLANRLYGEKTYNFLADFLASTQKMYGAELASVDFQQAPEDARKEINEW 135 Query: 188 M 188 + Sbjct: 136 V 136 >2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Listeria innocua} (A:) Length = 114 Score = 26.3 bits (58), Expect = 6.2 Identities = 10/29 (34%), Positives = 12/29 (41%) Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR 303 AI+S NGK I L N I + Sbjct: 10 AIISQNGKVIREIPLTGHKGNEQFTIKGK 38 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.132 0.365 Gapped Lambda K H 0.267 0.0598 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,145,609 Number of extensions: 89076 Number of successful extensions: 221 Number of sequences better than 10.0: 1 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 18 Length of query: 318 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 230 Effective length of database: 1,981,209 Effective search space: 455678070 Effective search space used: 455678070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.3 bits)