RPSBLAST alignment of GI: 254780687 and protein with PDBid: 1o6a

>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A Length = 96
 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           S+ +      D ++        + + +   +   + TLK V+ +  G +I          
Sbjct: 1   SETRKTEVPSDKLELL----LDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPV 56

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLK 312
            +  NGK I   E+  + +N+ +RIT+ ++  +  + L 
Sbjct: 57  DILVNGKLIARGEVVVIDENFGVRITEIVSPKERLELLN 95