HHsearch alignment for GI: 254780688 and conserved domain: COG1868

>COG1868 FliM Flagellar motor switch protein [Cell motility and secretion].

Probab=99.40  E-value=2.6e-12  Score=90.13  Aligned_cols=74  Identities=19%  Similarity=0.437  Sum_probs=68.3

Q ss_pred             HHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEECC
Q ss_conf             34305513899999213442999945797889984777888069999998999999999568887055899973167
Q gi|254780688|r   70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA  146 (147)
Q Consensus        70 ~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~iis~  146 (147)
T Consensus       248 ~~v~~v~V~l~A~l~~~~ltl~~il~L~vGDVI~l~~~~~d~v~v~v~g~~~f~c~~G~~---g~~~aVkI~~~i~~  321 (332)
T COG1868         248 QQVQRVEVELEARLGEISLTLREILRLEVGDVIPLEKPADDRVTVSVGGKPKFLCQYGKS---GGQYAVKILELINS  321 (332)
T ss_pred             HHHHCCCEEEEEEEECCEEEHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEECCCC---CCEEEEEEEEECCC
T ss_conf             997118668999960435469998589888679778877760799999989899811651---87789998310476