HHsearch alignment for GI: 254780688 and conserved domain: PRK05933

>PRK05933 type III secretion system protein; Validated.
Probab=99.40  E-value=2.2e-12  Score=90.48  Aligned_cols=63  Identities=25%  Similarity=0.558  Sum_probs=60.7

Q ss_pred             EEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             899999213442999945797889984777888069999998999999999568887055899973
Q gi|254780688|r   78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI  143 (147)
Q Consensus        78 ~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~i  143 (147)
T Consensus       309 kl~~Ev~R~~ltv~~~lkL~pGs~L~l~vhP~~GvdlilnG~kVgRgei~~lgd---vLGiRVLEv  371 (371)
T PRK05933        309 KLVVEVARYSLSVGEFLKLEPGSILELGVHPTLGVDIILNGAKVGRGEIIALGD---VLGIRVLEV  371 (371)
T ss_pred             EEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCCEECCCEEEEECC---EEEEEEEEC
T ss_conf             367786533566988733699877762577565613897252641300686403---002578509