HHsearch alignment for GI: 254780688 and conserved domain: PRK05933
>PRK05933 type III secretion system protein; Validated.
Probab=99.40 E-value=2.2e-12 Score=90.48 Aligned_cols=63 Identities=25% Similarity=0.558 Sum_probs=60.7
Q ss_pred EEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 899999213442999945797889984777888069999998999999999568887055899973
Q gi|254780688|r 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 (147)
Q Consensus 78 ~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~i 143 (147)
T Consensus 309 kl~~Ev~R~~ltv~~~lkL~pGs~L~l~vhP~~GvdlilnG~kVgRgei~~lgd---vLGiRVLEv 371 (371)
T PRK05933 309 KLVVEVARYSLSVGEFLKLEPGSILELGVHPTLGVDIILNGAKVGRGEIIALGD---VLGIRVLEV 371 (371)
T ss_pred EEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCCEECCCEEEEECC---EEEEEEEEC
T ss_conf 367786533566988733699877762577565613897252641300686403---002578509