HHsearch alignment for GI: 254780688 and conserved domain: PRK06788
>PRK06788 flagellar motor switch protein; Validated.
Probab=99.95 E-value=1.1e-27 Score=177.72 Aligned_cols=87 Identities=28% Similarity=0.555 Sum_probs=80.0
Q ss_pred CCCCCCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEE
Q ss_conf 43334231000234305513899999213442999945797889984777888069999998999999999568887055
Q gi|254780688|r 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 (147)
Q Consensus 58 ~~~~~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~g 137 (147)
T Consensus 17 ~~~~~~~~~~nldll~DV~v~vsVELGrt~m~ikdlL~L~~GsVVELdk~AGepvDi~VNgkliArGEVVVvde---~fG 93 (119)
T PRK06788 17 AGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVMDE---KFG 93 (119)
T ss_pred CCCCCCCCCCCCCEEEECEEEEEEEECCEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC---CCE
T ss_conf 68877676346556971206999997542568999745799868998434899679999999998775999858---606
Q ss_pred EEEEEEECCC
Q ss_conf 8999731679
Q gi|254780688|r 138 VRVIEILNAQ 147 (147)
Q Consensus 138 vrIt~iis~~ 147 (147)
T Consensus 94 VRITeI~~~k 103 (119)
T PRK06788 94 IIISEIEADK 103 (119)
T ss_pred EEEEEECCHH
T ss_conf 8999844456