HHsearch alignment for GI: 254780688 and conserved domain: PRK06788

>PRK06788 flagellar motor switch protein; Validated.
Probab=99.95  E-value=1.1e-27  Score=177.72  Aligned_cols=87  Identities=28%  Similarity=0.555  Sum_probs=80.0

Q ss_pred             CCCCCCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEE
Q ss_conf             43334231000234305513899999213442999945797889984777888069999998999999999568887055
Q gi|254780688|r   58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG  137 (147)
Q Consensus        58 ~~~~~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~g  137 (147)
T Consensus        17 ~~~~~~~~~~nldll~DV~v~vsVELGrt~m~ikdlL~L~~GsVVELdk~AGepvDi~VNgkliArGEVVVvde---~fG   93 (119)
T PRK06788         17 AGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVMDE---KFG   93 (119)
T ss_pred             CCCCCCCCCCCCCEEEECEEEEEEEECCEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC---CCE
T ss_conf             68877676346556971206999997542568999745799868998434899679999999998775999858---606


Q ss_pred             EEEEEEECCC
Q ss_conf             8999731679
Q gi|254780688|r  138 VRVIEILNAQ  147 (147)
Q Consensus       138 vrIt~iis~~  147 (147)
T Consensus        94 VRITeI~~~k  103 (119)
T PRK06788         94 IIISEIEADK  103 (119)
T ss_pred             EEEEEECCHH
T ss_conf             8999844456