HHsearch alignment for GI: 254780688 and conserved domain: PRK07963
>PRK07963 fliN flagellar motor switch protein FliN; Validated.
Probab=99.95 E-value=6.3e-28 Score=179.18 Aligned_cols=83 Identities=39% Similarity=0.730 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf 42310002343055138999992134429999457978899847778880699999989999999995688870558999
Q gi|254780688|r 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 (147)
Q Consensus 62 ~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt 141 (147)
T Consensus 47 ~~~~~~dldlilDIpV~itVeLGrt~m~i~eLL~L~~GsVIeLdr~agepvdI~VNg~liA~GEVVvv~d---k~GVRIt 123 (137)
T PRK07963 47 VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRIT 123 (137)
T ss_pred CCCCCCCCCEEECCEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC---EEEEEEE
T ss_conf 6686557226861417999999033208999845699988984775999569999999999987999998---7889999
Q ss_pred EEECCC
Q ss_conf 731679
Q gi|254780688|r 142 EILNAQ 147 (147)
Q Consensus 142 ~iis~~ 147 (147)
T Consensus 124 eIisp~ 129 (137)
T PRK07963 124 DIITPS 129 (137)
T ss_pred EECCHH
T ss_conf 855989