HHsearch alignment for GI: 254780688 and conserved domain: PRK07963

>PRK07963 fliN flagellar motor switch protein FliN; Validated.
Probab=99.95  E-value=6.3e-28  Score=179.18  Aligned_cols=83  Identities=39%  Similarity=0.730  Sum_probs=78.3

Q ss_pred             CCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf             42310002343055138999992134429999457978899847778880699999989999999995688870558999
Q gi|254780688|r   62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI  141 (147)
Q Consensus        62 ~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt  141 (147)
T Consensus        47 ~~~~~~dldlilDIpV~itVeLGrt~m~i~eLL~L~~GsVIeLdr~agepvdI~VNg~liA~GEVVvv~d---k~GVRIt  123 (137)
T PRK07963         47 VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRIT  123 (137)
T ss_pred             CCCCCCCCCEEECCEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC---EEEEEEE
T ss_conf             6686557226861417999999033208999845699988984775999569999999999987999998---7889999


Q ss_pred             EEECCC
Q ss_conf             731679
Q gi|254780688|r  142 EILNAQ  147 (147)
Q Consensus       142 ~iis~~  147 (147)
T Consensus       124 eIisp~  129 (137)
T PRK07963        124 DIITPS  129 (137)
T ss_pred             EECCHH
T ss_conf             855989