HHsearch alignment for GI: 254780688 and conserved domain: PRK08119
>PRK08119 flagellar motor switch protein; Validated.
Probab=99.97 E-value=2.7e-30 Score=192.67 Aligned_cols=87 Identities=34% Similarity=0.708 Sum_probs=80.5
Q ss_pred CCCCCCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEE
Q ss_conf 43334231000234305513899999213442999945797889984777888069999998999999999568887055
Q gi|254780688|r 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 (147)
Q Consensus 58 ~~~~~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~g 137 (147)
T Consensus 297 ~~~~~~~~~~~~~~~~dvpl~~~v~lg~t~~~i~~~l~l~~g~vi~l~~~~~ep~~i~vng~~ia~gevv~~~~---~fg 373 (390)
T PRK08119 297 EPSLASTEPRNLDLILDVPLQITVELGRTKKSIKDILELGPGSIIELDKLAGEPVDILVNGKLVAKGEVVVIDE---NFG 373 (390)
T ss_pred CCCCCCCCCHHHHHHCCCCEEEEEEEECCEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECC---CCE
T ss_conf 55434455122455313752899998031567999736799977982444799769999999999765999888---403
Q ss_pred EEEEEEECCC
Q ss_conf 8999731679
Q gi|254780688|r 138 VRVIEILNAQ 147 (147)
Q Consensus 138 vrIt~iis~~ 147 (147)
T Consensus 374 vrit~iv~~~ 383 (390)
T PRK08119 374 VRITDIVSPA 383 (390)
T ss_pred EEEEEECCHH
T ss_conf 7898626989