HHsearch alignment for GI: 254780688 and conserved domain: PRK08432

>PRK08432 flagellar motor switch protein FliY; Validated.
Probab=99.95  E-value=2e-28  Score=182.02  Aligned_cols=85  Identities=22%  Similarity=0.560  Sum_probs=79.5

Q ss_pred             CCCCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEE
Q ss_conf             33423100023430551389999921344299994579788998477788806999999899999999956888705589
Q gi|254780688|r   60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR  139 (147)
Q Consensus        60 ~~~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvr  139 (147)
T Consensus       189 ~l~~~~~~n~~ll~Dv~l~v~VelGrt~m~ikdiL~l~~GsvveLdk~a~ep~di~vn~~liA~GEvVvv~~---~fGvr  265 (281)
T PRK08432        189 SLSSEEIKNINLIMDVRLPVKVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDG---NFGIQ  265 (281)
T ss_pred             CCCCHHHCCCCEEEECCEEEEEEECCCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC---CCEEE
T ss_conf             557610146105894543899997763047999852799967985223799648999999998762999878---40289


Q ss_pred             EEEEECCC
Q ss_conf             99731679
Q gi|254780688|r  140 VIEILNAQ  147 (147)
Q Consensus       140 It~iis~~  147 (147)
T Consensus       266 it~I~s~~  273 (281)
T PRK08432        266 ITDIGTKK  273 (281)
T ss_pred             EEEECCHH
T ss_conf             99836989