HHsearch alignment for GI: 254780688 and conserved domain: PRK08432
>PRK08432 flagellar motor switch protein FliY; Validated.
Probab=99.95 E-value=2e-28 Score=182.02 Aligned_cols=85 Identities=22% Similarity=0.560 Sum_probs=79.5
Q ss_pred CCCCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEE
Q ss_conf 33423100023430551389999921344299994579788998477788806999999899999999956888705589
Q gi|254780688|r 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 (147)
Q Consensus 60 ~~~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvr 139 (147)
T Consensus 189 ~l~~~~~~n~~ll~Dv~l~v~VelGrt~m~ikdiL~l~~GsvveLdk~a~ep~di~vn~~liA~GEvVvv~~---~fGvr 265 (281)
T PRK08432 189 SLSSEEIKNINLIMDVRLPVKVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDG---NFGIQ 265 (281)
T ss_pred CCCCHHHCCCCEEEECCEEEEEEECCCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC---CCEEE
T ss_conf 557610146105894543899997763047999852799967985223799648999999998762999878---40289
Q ss_pred EEEEECCC
Q ss_conf 99731679
Q gi|254780688|r 140 VIEILNAQ 147 (147)
Q Consensus 140 It~iis~~ 147 (147)
T Consensus 266 it~I~s~~ 273 (281)
T PRK08432 266 ITDIGTKK 273 (281)
T ss_pred EEEECCHH
T ss_conf 99836989