HHsearch results for GI: 254780688 and protein with PDBid: 1o6a_A
>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=99.80 E-value=2.5e-19 Score=128.86 Aligned_cols=80 Identities=38% Similarity=0.781 Sum_probs=75.1
Q ss_pred CHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 10002343055138999992134429999457978899847778880699999989999999995688870558999731
Q gi|254780688|r 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 (147)
Q Consensus 65 ~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~ii 144 (147)
....++.|+|+||+++|+||+++++++||++|++|+||+|++.++++|+|+|||+++|+|+++.+|+ |+||||++++
T Consensus 9 ~~~~l~~l~di~v~l~~~lg~~~l~l~dl~~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~---~~av~I~~~i 85 (96)
T 1o6a_A 9 PSDKLELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDE---NFGVRITEIV 85 (96)
T ss_dssp -CHHHHHHTTCEEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETT---EEEEEEEEEC
T ss_pred CHHHHHHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECC---EEEEEEEEEC
T ss_conf 7024466326608999999510856999846899999991798999789999999999999999999---9999999841
Q ss_pred CCC
Q ss_conf 679
Q gi|254780688|r 145 NAQ 147 (147)
Q Consensus 145 s~~ 147 (147)
+++
T Consensus 86 ~~~ 88 (96)
T 1o6a_A 86 SPK 88 (96)
T ss_dssp CHH
T ss_pred CCH
T ss_conf 948